>input_sequence_66912
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--------------------------------------------------ATGCCGCAGACGCCATCGACCCGTTGGTGC
CCGACGCCTGAGCAGCTGATGATCCTGGAGGAGATGTACCGGAGCGGCGTGCGCACACCTAACGCGGCGGAGATCCAGCA
GATCACGGCGCACCTCGCCTACTACGGCCGCATCGAGGGAAAGAACGTCTTCTACTGGTTCCAGAACCACAAAGCCCGCG
AGCGCCAGCGTCTCCGTCGCCGCCTCTGCGCCCGCCACCAGCAACCCTCCTCGCCGGCGGCTCCTCCTCCTCCTCCTCCT
---CATACTGGTGCTGCCGGTGGCGGAGGCAATGCTGCTGGTGCTGGTGCTGGCGTGAACGCGATGCACCCCGCGGTGAT
GCAGCTGCACCATCACCACCACACATACGCTACCAGCTGCTTCATGGCGCCTCAGGTCTTTAAATTTTCTATTGCTAACT
TAGTATAGTAATTTCTATT--CGCGCATACCTATATTTGTTCCTCTACTTCCTTTCTGAAGAAACAAAAACAATATACCA
A-AACATTTAACTCATGGAATATACATATGTAGGGCTACTTGCAGCAGGAAACAGCAGCAGCAGGAGCTCTTCCAGTTTC
GGGGTTGGAGTTTGCAGGCAAGACAAGCCAGCAGCAGGAATGGATGATGCAGCAGCAGATGGTGATGGACAACAGCAACA
TTAACAACAGTGTAGCAGCAGCTGGAGGCAGCTCCGCAGCGGCCGGCGGTGGTATGAATAATATGACCCCACCGCCATGG
CCATGCTGCCGGCCGCTCAGAACCCTAGAGCTCTTCCCTACAAAGAGCACCGGCGGCGGCCTCAGGGACGAGTGCAGCAG
CTCCAAGTCCTCCTCTTGTTCCACCTCCACAAACTAG-------------------------------------------
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>chr5B_1_TraesCS5B01G156400
TGTTGGGATTGCCATAATCTCAATTCAAGGACATCCTACTATCCTTCAAAGCCTACTTCAATAAGACATTT-TTTTCATG
GAGATTCTGATTCTCGGCACTTGGCAGTTTGGCAAACTAGAAATTATCATATATTCAAAGACACTCGATCTAACTTATTT
TGATGCAAGAA-GAAGTCCAAAGAGCAACATGCTATGGTTGTTCCAACTGCAAAGA-AAATAAATATGCTCATTTCCGCA
G-------------------------------------------------------------------------------
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----------------------------------------------------------------CTGGATTTAGTCCTTC
TTGTACCTTTCATAACTAGATA--------TTGTTTATTTTTCATGTATTCTTGTTATTGTACCTTATTACATAAAATAT
ATTAAAAACACAACAGAG--TTGATGTTAGCTCGAAAAGAAAAAAACTTGCCCCACTTCCGAATTCGAAATTCAATCCAG
AAAAGTTTGTTCTCTCATCATTGCAAACAACTCTTCC--TTAGGTAAAACTCAGCCGAGCATGGTGAAACAAGGACGTGG
CATGGGCAACAATGTCCCGAGATGCATTTACTACAAAATTCAAAATTTTATCTACACGTGGAGAAACATTTTTTGTTCGT
GCATAAAAAAAGTGAGATTATATATTTATCTCATGATACTTATA----TTCCTACTTCATCTAAATATATAGCCATATAT
GGAGAAATGACATTAATTTCAAAATGCACGCAAA-----AAGTCCCAGCTGTGGGAAAATGAGGAGCTAACCCTAGGGCG
ATTCCAGTAGTGGCTAAATAAGTGTGTCAACACTTGACTCTGACAGTTCACCGCACCAATTTGTCTCACGTCTCCTCTCA
CCACCTGCTCACTGGAGTAATTGACCCAGCTAGCTCTTGCTACCTTAGCTAGCCCGGCCAGCTCGGTCTATATAACTCAC
TCAACCTTAGGCTTGGAACATATCCCTAGCACCAACGTACGTACACTAGCACTTGCAGCAGCTAGCTCTAGCACGCAGTT
AACTAGACACAAAGATCGAGATCCAAGAGCAGTAGTTAAG---GAGGAAGATGCCGCAGACGCCATCGACCCGTTGGTGC
CCGACGCCTGAGCAGCTGATGATCCTGGAGGAGATGTACCGGAGCGGCGTGCGCACACCTAACGCGGCGGAGATCCAGCA
GATCACGGCGCACCTCGCCTACTACGGCCGCATCGAGGGAAAGAACGTCTTCTACTGGTTCCAGAACCACAAAGCCCGCG
AGCGCCAGCGTCTCCGTCGCCGCCTCTGCGCCCGCCACCAGCAACCCTCCTCGCCGGCGGCTCCTCCTCCTCCTCCTCCT
---CATACTGGTGCTGCCGGTGGCGGAGGCAATGCTGCTGGTGCTGGTGCTGGCGTGAACGCGATGCACCCCGCGGTGAT
GCAGCTGCACCATCACCACCACACATACGCTACCAGCTGCTTCATGGCGCCTCAGGTCTTTAAATTTTCTATTGCTAACT
TAGTATAGTAATTTCTATT--CGCGCATACCTATATTTGTTCCTCTACTTCCTTTCTGAAGAAACAAAAACAATATACCA
A-AACATTTAACTCATGGAATATACATATGTAGGGCTACTTGCAGCAGGAAACAGCAGCAGCAGGAGCTCTTCCAGTTTC
GGGGTTGGAGTTTGCAGGCAAGACAAGCCAGCAGCAGGAATGGATGATGCAGCAGCAGATGGTGATGGACAACAGCAACA
TTAACAACAGTGTAGCAGCAGCTGGAGGCAGCTCCGCAGCGGCCGGCGGTGGTATGAATAATATGACCCCACCGCCATGG
CCATGCTGCCGGCCGCTCAGAACCCTAGAGCTCTTCCCTACAAAGAGCACCGGCGGCGGCCTCAGGGACGAGTGCAGCAG
CTCCAAGTCCTCCTCTTGTTCCACCTCCACAAACTAGCTAGCTTGACATGATCT----CTA----CTTCACTATATATTA
TCTCTAGCTAAAGTTACCTGTGGGTTTTCCTGGTGA--TGTGTGCGTTTTTAGTTTTATTTTA----GTTATTCTTATGG
ACCTGCTCTCCTCTAATACGGTGAGCAGTGTGTTGCTTGTGTTTGACTTGACGCATTGATGCTAAGTATTTTGTTTCCTA
AGTTGTGCCGTTGAGTTTGTAAGCCCAGCGTGTTGCTAGTTTTTGTAACATGTAT--------CCACTACTTGTTAAGTT
GCTTTTGGCATTGTAATGAAATAATATAATTATTACTCTCATTTCATTAAGTCATAAGTACACATTGTCATATTTGCATC
CTGCTTGTTTCTACAATCAGTTCAAAACGCAATACTGGAATCGGTGGAAGATGCCTAGTTCCTCGTGTTTGCCTCGTATT
TTTTATCAGGAAGTCGGCAATGGCAGCCGTTTACTGAGAACCGACTGAAACGAACTCAAAAATGGCACGAAACTTGGAAA
ATGTGAAAGTTTGCCCAGTGCCTAGAAAAAGCAACTTGGCGACCATACAAGACCCGGAAAATTGCCTTCGTTTGCGAAGT
CCTGCTCTAGGCGAACTCGGCAAAGGACGGAACGGGCCCCATGCAGGCCAGGTGACGGTTGCGTGACGGCGGGGCTGGCC
TTTGTCGAGTTTCCACTAACGAAAACTCGGTAGACCTTTATCATTTTTAATTTCTTAAATAAGGAAAGTCAAAGGTCGTC
CGAGGATGCCATTCTCACTCTTTGCCGAGTACTGCTCGGAGGATCTTGGCAAACATTTCTTGTTGAAATCACTAGTGTGA
CCCCCTTTTGCCGAGTTCAGAGCTCGGCAATCGTTCTATCTATATTCTTTTCAAAGCTGCAAAAGTCAGGAGTCACAAGG
TGTTGCCACATGGCACCTTTGCTGAGTTCAGTGCTCAACAACAAGCTTGTTACCGAGTTTGGCGCCCGGCAAATCTTTGC
CAAGCAACTATTTTTTGTT
>chr5D_1
TGTTGGGATTGCCATAATTTCAATTCAAGGACATTCTACTATCCTTCAAAGCCTACTTCAATAAGCCATCTGTTTTCATG
GAGATTCTGATTCTTGGCACTTGGCAGTTTGGC-AACTAGAAATGATCATATATTCAAAGGCACTCGACCTAACTTATTT
TGATGCAAGAAAGAAGTTCAAAGAGGAACTTGCTATGGTTGTTCCAACTGCGAAGAGAAATAAATATGCTCATTTGCCGA
AAAAGGCTTTCGCCCCGCTTTATATATAAAGCAACGATCACAACAAGCATCCAGTACAAACACACACCACCGCAACAAAC
GCACACACCCAAGGCAGGATACATAGGTGCTGAGCGCAGCAACACCACCCCTAGCACTATCACCACGAAGAGATGAAGCT
ACATATGACGGACCATGTGCTCCAAGGCGGCGCCTTCAGGAAGGGTACGACACCGGAGCGCCGCCACCGCCAGATCCAAG
GATCAGAGTTTCCCCTGGAGCCGCATGATGGGCAATGAGAGCCGCGACGACGCCTTCAAGAAGGGAATGATCTCCGCCGC
CACTGGTCCGTCCGTAGATAGAACAAGTTTTCACCTCGGCCACCACTCACCGCCACCGAACACCACACCCCGGCAACCAC
GCCGCCCACACGGCCATGATGACCGGGCAGCACCAAGGCACGGGCTTTGCCCAAGAGCACCGTGCAACCACCACCAGGGC
CGCCGCCCTGGCATCCAAAACCGTGACACCACCTCACCCGAGACCCGCCGCAACCCCAACGAGAGAGACGAGCGGAAAGG
TCCCACCTTTCGCACCCCTGGGCGACCCCCAGCGTCGAGATCCGATAGGTCGGCCAGAACTGGCATCCACATGCCCGTCC
TGCTGCCTCATGCGCGAGACGAGCTAGGACCTGCAGCACCGAGAAGGGGACGAGGTTAGTCCTGCTGCACCGTACGCGAG
ACGAGCTCAGTCCAGCTGCATCATGCGCGAGACGAGCTCCGTCCTGCAGCACTGGGCGCAAGACGAGCGGTAGACCGCAG
CTAGGAGAGGACCAGCCCTATGATGGGAGTAACGCCCGGGCGACGAGGAGATGGGGCCAAGGCCGAGACGACCCGAACAC
AGACAAGCCGATGCCGGAGAAGCCGGCCGCCGCCGCGGGCAGGTTCGCCGAACCACCGTGAAGCTGCCACGACACCGGGA
GGGCACCACCACGGACCTTCCCACGCCGCGGCCCACGGCCGAAGCAGCGGCCACGCCCGACCGCTACCCTACCTGTGTCG
CCCGACGAGCTCCAAGCGCTGGAGCCGCCGGGCACGCACCACCGAATCCACGCGCCGCCGGCCAGCCCCCAACGCCAGAT
CCGTCCGGAACCAGCAAGAGATCGGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNGCGAAGGAACGGGGGCGGCGGCGCTATGGGGTTCCCTCCCAGGGGTGCCCGCGGGAGCGCCACGGGAGGGGAGGGG
GCGATTCTTTCCTGGTCCCTTGGTTCAAGCAAGGGGCGTTTCATAAATATGCGCATTTCCGTACCTGGATTTAGTCCTTC
TTGTAGCTTTCATAGCTAAATATTTAGTATTTGTTTATTTTTTGTGTATTCTTGTTATTGTAC--TATTACACAAAATAT
ATTAAAAACACAACAGAGAGTTGATGTTAGTTAAA----AAAAATACTTGCCCCACTTCCGGATTCGAAATTCAATCCAG
CAAAGTTTGTTCTTCCATCATTGCAAA-AACTCTTCCTTTTAGGTAAAACTCAGCCGAGCATGGTGAAATCAGGAAATGG
CATGGACAACAATGTCGCGAGATGCATTTACTACGAGATTCAAAATTTTATCTACACGTGGAGAAATATTTTTTGTTCGT
GCACAAAAAAAGTGAGATTATGTATTTATCTCATGGTACTTATA----TTACTACTTCATCTAAACATATAGCCATATAT
GGAGAAATGACATTAATTTCAAAATGCATGCAACTATGCAAGTCCCAGCTGTGGGAAAATGAGGAGCTAACCCTAGGGCG
ATTCCAGTAGTGGCTAAATAAGTGTGTCAATCCTTGACTCTGACAGTTCATCGCACCAATTTGTCTCACGTCTCCTCTCA
CCACCTGCTCACTGGAGTAATTGACTCAGCTAGCTCTTGCTACCTTAGCTAGCCCGGCCAGCTCGGTCTATATAACTCAC
TCAACCTTAGGCTTGGAACATATCCCTAGCACCAACGTACGTACACTAGCACTAGCAGCAGCCAGCTCTAGCACGCAGTT
AACTAGACACAAAGATCGAGATCCAAGAGCAGTAGTTAAG---GAGGAAGATGCCGCAGACGCCATCGACCCGTTGGTGC
CCGACGCCTGAGCAGCTGATGATCCTGGAGGAGATGTACCGGAGCGGCGTGCGCACACCTAACGCGGCGGAGATCCAGCA
GATCACGGCGCACCTCGCCTACTACGGCCGCATCGAGGGAAAGAACGTCTTCTACTGGTTCCAGAACCACAAGGCCCGCG
AGCGCCAGCGTCTCCGTCGCCGCCTCTGCGCCCGCCACCAGCAACCCTCCTCCCCGGCGGCTCCTCCTCCTCCTCCTCCT
CCTCATACTGGTGCTGCCGGTGGCGGAGGCAATGCTGCTGGTGCTGGTGCGGGCGTGAACGTGATGCACCCCGCGGTGAT
GCAGCTGCACCATCACCACCACACATACGCTACCAGCTGCTTCATGGCGCCTCAGGTCTTTAAATTTTCTATTGCTAACT
TAGG--AGCAATTTCTATTCGCGCATACTAATTTCTATTCGCG------------------------------------C
ATAACAATTAACTCATGGAATATACATATGTAGGGCTACTTGGAGCAGGAAACAGCAGCAGCAGGAGCTCTTCCAGTTTC
GGGGTTGGAGTTTGCAGGCAAGACAAGCCAGCAGCAGGAATGGATGGCGCAGGAGCAGATGGTGATGGAGAACAGCAACA
TTAACAACAGTGTAGCAGCAGCTGGAGGCAGCTCCGCATCGGCCGGCGGTGGTATGAATAATATGACCCCGCCGCCATGG
CCATGCTGCCGGCCGCTCAGAACCCTAGAGCTCTTCCCTACAAAGAGCACCGGTGGCGGCCTCAGGGACGAGTGCAGCAG
CTCCAAGTCCTCCTCTTGCTCCACCTCCACAAACTAGCTAGCTTGACATGATCT----CTAGCTACTTCACTATATATTA
TCTCTAGCTAAAGTTACCTGTGGGTTTTCCTGGCGA--TGTGTGTGTTTTTAGTTTTATTTTA----GTT-TTTTTACGG
ACCTGCTCCCTTCTAATACGGTGAGCAGTGTGTTGCCTGTGTTTGACTTGACGCATTGATGCTAAGTATTTTGTTTCCTA
AGTTGTGCCGTTGAGTTTGTAAGCCCAGCGTGTTGCTAGTTTTTGTAACATGTATTCTTAAGTCCACTACTTGCTAGGTT
GCTTTTGGCATTGTAGTGAAATAATATAATTATTTATCTCATTTCATTAAGTCGTATGTACACATTGTCATATTTGCATC
CTGGTTGTTTCTACAATCAGTTCAAAACACAATACTGGAATCGGTGGAAGATGCCTAGTTCCTTGTGTTTCCCTTGTGTT
TTTTATCGGGAACTCGGAAATGGCAGCCGTTTACTGAGAACCGACTGAAAGGAACTCAGCAATGGCACGAAACTCGGAAA
ATGTGGAAGTTTGCCCAGTG------------------------------------------------------------
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----------------------------------TCGAGAAAAAGCATGTTACCGAGTTTGGCGT-CGGCAAATCTTTGC
CAAGCAACTATTTTTTG--
>chr5A_521
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--------------------------------------TTCAAAAATTTATCTACACGTGGAGAAACATTTTTTGTTCGT
GCACAAAAAAAGTGAGATTATATATTTATCTCATGATACTTATATATATTAGTACTTCATCTAT--ATATAGCCATATAT
GGAGAAATGACATTAATTCCCAAATGCATGCAACTATGCAAGTCCCAGCTGTGGGAAAATGAGGAGCTAACCCTAGGGCG
ATTCCAGTAGTGGCTAAATAAGTGTGTCAACCCTTGACTCTGACAGTTCACCGCACCAATTTGTCTCACGTCTCCTCTCA
GCACCTGCTCACTGGAGTAATTGACTCGGCTAGCTCTTGCTACCTTAGCTAGCCCGGCCAGCTCGGTCTATATAACTCAC
TCAACCTTAGGCTTGGAACATATCCCTAGCACCAACGTACGCACACTAGCACTTGCAGCAGCTAGCTCTAGCACGCAGTT
AACTAGACACAAAGATCGAGATCCAAGAGCAGTAGTTAAGAAGGAGGAAGATGCCGCAGACGCCATCGACCCGTTGGTGC
CCGACGCCTGAGCAGCTGATGATCCTGGAGGAGATGTACCGGAGCGGCGTGCGCACACCTAACGCGGCGGAGATCCAGCA
GATCACGGCGCACCTCGCCTACTACGGCCGCATCGAGGGAAAGAACGTCTTCTACTGGTTCCAGAACCACAAGGCCCGCG
AGCGCCAGCGTCTCCGTCGCCGCCTCTGCGCCCGCCACCAGCAACCCTCCTCGCCGGCGGCTCCTCCTCCTCCTCCTCCT
---CATACTGGTGCTGCCGGCGGCGGAGGCAATGCTGCTGGTGCTGGTGCGGGCGTGAACGCGATTCACCCCGCGGTGAT
GCAGCTGCACCATCACCACCACACATACGCAACCAGCTGCTTCATGGCGCCTCAGGTCTTTAAATTTTCTATTGCTAACT
TATG--AGTAATTTCTATACGCGCGCATACCTATATTTATTCCTCTACCTCTTTTCTGAAGAAACAAAAACAATATAGCC
ATAACAATTAACTCATGGAATATACATATGTAGGGCTACTTGCAGCAGGAAACAGCAGCAGGAGGAGCTCTTCCAGTTTC
GGGGTTGGAGTTTGCAGGCAAGACAAGCCAGCAGCAGGAATGGATGACACAGCAGCAGATGGTGATGGAGAACAGCAACT
TTAACAACAGTGTAGCAGCAGCTGGAGGCAGCTCCGCAGCGGCCGGCGGTGGTATGAATAATATGACCCCGCCGCCATGG
CCATGCTGCCGGCCGCTCAGAACCCTAGAGCTCTTCCCTACAAAGAGCACCGGTGGCGGCCTCAGGGACGAGTGCAGCAG
CTCCAAGTCCTCCTCTTGCTCCACCTCCACAAACTAGCTAGCTTGATATGATCTCTAGCTA----CTTCACTATATATTA
TCTCTAGCTAAAGTTACCTGTGGGTTTTCCTGGTGATGTGTGTGTGTTTTTAGTTTTATTTTAATTAGTT-TTTTTATGG
ACCTGCTCCCTTCTAATACGGTGAGCAGTGTGTTGCTTGTGTTTGACTTGACGCATTGATGCTAAGTACTTTGTTTCCTA
AGTTGTGCCGTTGAGTTTGTAAGCCCAGTGTGTTGCTAGTTTTTGTAACATGTATTCTCAAGTCCACTACTTGTTAGGTT
GCTTTTGGCATTGTAGTGAAATAATATAATTATTAATCTCATTTCACTAAGCCGTATGTACACATTGTCATATTTGCATC
CTGCTTGTTTTCACAATCAGTTCCAAACACAATACTGGAATCG-TGGAAGATGCCTAGTTCCTTGTGTTTGCCTCGTGTT
TTTTTCGGAAACTT--GAAATGGCAGCTGGTTACTGAGAACCGACTGA--------------------------------
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>SNPs
------------------S---------------S------------------------------S---S----------
--------------S------------------S----------S---------------S-------S-----------
-----------------S-------S---S---------------------S-----------------------S-SS-
S-------------------------------------------------------------------------------
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-----S--------S---S-----------------------SS-------------------SS-------S-------
------------------------------S-SS-SSSS-----S----------------S------------------
S------------SS------------S-----------------------------------------SS----SS---
-----S----------S-----------------S-S-------------------------------------------
---S----------------------------------------------S--------------S--------------
----------------------------S----S----------------------------------------------
-------------------------------S------------------------------------------------
-------------------------S------------------------------------------------------
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------------------------------------------------------------------------S-------
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--------------------------------------------------S-----------------------------
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---SSS--------------------------------S---------S--S-------------------------S-S
------S-------------------------------------------------------------------------
-----------------------------------------------S---------------------S----------
----------------------------------------------------------------------S---------
-----------------------------------------------------S--------------------------
------------------S-------------------------------------------------------------
--------------------------------------------S-------------------------S--S------
--------S-S---------------------------------------------------------------------
----------------------------------------------------------------------------S---
---------------S-------------------S-----------------S--S-----------------------
----------------------------S----------------------------------S-------------S--
-------S----S----S--------------------------------S-------SS--------------S-----
-----S--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S-S--S----S-----------------SS--------------
-----------------SS
>forward_2302
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------------------------------------------AAAACTTGCCCCACTTCCGA------------------
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>reverse_4258
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-----------------CAATGGCAGCCGTTTACTGAG------------------------------------------
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