Multiple sequence alignment - TraesCS5B01G147400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G147400 chr5B 100.000 2537 0 0 1 2537 275367628 275370164 0.000000e+00 4686.0
1 TraesCS5B01G147400 chr5B 78.860 544 81 19 22 548 530655566 530655040 1.120000e-88 337.0
2 TraesCS5B01G147400 chr5B 88.148 270 27 3 21 285 92841431 92841162 1.460000e-82 316.0
3 TraesCS5B01G147400 chr5B 89.796 98 9 1 1980 2076 559771496 559771399 9.530000e-25 124.0
4 TraesCS5B01G147400 chr5A 91.906 1149 50 27 851 1986 326432931 326434049 0.000000e+00 1567.0
5 TraesCS5B01G147400 chr5A 97.009 234 6 1 2067 2300 326434048 326434280 2.370000e-105 392.0
6 TraesCS5B01G147400 chr5A 98.235 170 3 0 2337 2506 290391864 290391695 5.310000e-77 298.0
7 TraesCS5B01G147400 chr5A 95.652 46 1 1 2295 2340 326434333 326434377 3.500000e-09 73.1
8 TraesCS5B01G147400 chr5A 100.000 33 0 0 2505 2537 326434379 326434411 7.580000e-06 62.1
9 TraesCS5B01G147400 chr5D 92.390 1117 52 22 875 1986 230394239 230393151 0.000000e+00 1561.0
10 TraesCS5B01G147400 chr5D 97.436 234 5 1 2067 2300 230393152 230392920 5.090000e-107 398.0
11 TraesCS5B01G147400 chr5D 78.431 663 98 25 24 658 540828183 540828828 8.510000e-105 390.0
12 TraesCS5B01G147400 chr5D 78.170 623 85 24 24 630 345078346 345077759 1.440000e-92 350.0
13 TraesCS5B01G147400 chr5D 82.456 285 35 10 318 601 497016680 497016410 4.220000e-58 235.0
14 TraesCS5B01G147400 chr5D 79.762 336 52 12 330 655 511716597 511716926 1.960000e-56 230.0
15 TraesCS5B01G147400 chr5D 77.404 416 65 19 330 721 12067794 12068204 1.180000e-53 220.0
16 TraesCS5B01G147400 chr5D 92.000 100 7 1 800 898 230394353 230394254 3.400000e-29 139.0
17 TraesCS5B01G147400 chr5D 97.826 46 1 0 2295 2340 230392867 230392822 2.090000e-11 80.5
18 TraesCS5B01G147400 chr7D 79.730 666 81 29 21 654 69289127 69289770 1.390000e-117 433.0
19 TraesCS5B01G147400 chr7D 79.118 340 57 10 330 658 184583597 184583933 3.290000e-54 222.0
20 TraesCS5B01G147400 chr7D 78.841 345 55 10 315 649 263944332 263944668 1.530000e-52 217.0
21 TraesCS5B01G147400 chr7D 92.473 93 6 1 1982 2073 510397755 510397847 5.690000e-27 132.0
22 TraesCS5B01G147400 chr7D 91.489 94 7 1 1980 2072 22964346 22964253 7.370000e-26 128.0
23 TraesCS5B01G147400 chr3D 80.984 447 55 15 21 453 511735484 511735914 6.770000e-86 327.0
24 TraesCS5B01G147400 chr3D 91.398 93 7 1 1977 2068 54370405 54370497 2.650000e-25 126.0
25 TraesCS5B01G147400 chr4A 83.333 348 50 8 24 366 219192902 219192558 5.270000e-82 315.0
26 TraesCS5B01G147400 chr1D 86.598 291 31 7 24 307 365221486 365221197 5.270000e-82 315.0
27 TraesCS5B01G147400 chr1D 97.674 172 3 1 2340 2511 238940216 238940386 6.860000e-76 294.0
28 TraesCS5B01G147400 chr1D 92.553 94 4 3 1982 2073 409047140 409047048 5.690000e-27 132.0
29 TraesCS5B01G147400 chr4D 82.222 360 58 5 24 379 450217730 450217373 3.170000e-79 305.0
30 TraesCS5B01G147400 chr4D 97.159 176 4 1 2336 2511 93338210 93338036 1.910000e-76 296.0
31 TraesCS5B01G147400 chr4D 97.110 173 5 0 2337 2509 46028534 46028706 2.470000e-75 292.0
32 TraesCS5B01G147400 chr4D 96.591 176 6 0 2335 2510 366191501 366191326 2.470000e-75 292.0
33 TraesCS5B01G147400 chr4D 92.391 92 6 1 1981 2071 218516195 218516286 2.050000e-26 130.0
34 TraesCS5B01G147400 chr7B 87.594 266 28 4 22 282 15933059 15933324 1.140000e-78 303.0
35 TraesCS5B01G147400 chr7B 79.811 317 43 15 324 626 10914337 10914646 7.110000e-51 211.0
36 TraesCS5B01G147400 chr7B 92.308 91 5 2 1980 2069 625161226 625161315 7.370000e-26 128.0
37 TraesCS5B01G147400 chr6D 98.795 166 2 0 2339 2504 406391524 406391359 1.910000e-76 296.0
38 TraesCS5B01G147400 chr6D 78.531 354 53 13 324 658 42922057 42921708 7.110000e-51 211.0
39 TraesCS5B01G147400 chr6D 78.426 343 56 11 330 658 69903904 69904242 9.200000e-50 207.0
40 TraesCS5B01G147400 chr6D 90.722 97 6 3 1975 2069 78083173 78083078 2.650000e-25 126.0
41 TraesCS5B01G147400 chr2D 97.674 172 4 0 2335 2506 560959480 560959651 1.910000e-76 296.0
42 TraesCS5B01G147400 chr3B 96.571 175 5 1 2336 2510 62970099 62969926 3.190000e-74 289.0
43 TraesCS5B01G147400 chr1B 94.211 190 7 4 2329 2516 62447229 62447416 1.150000e-73 287.0
44 TraesCS5B01G147400 chrUn 79.412 408 65 14 333 725 24513571 24513168 1.160000e-68 270.0
45 TraesCS5B01G147400 chr4B 93.258 89 5 1 1982 2069 106975855 106975943 2.050000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G147400 chr5B 275367628 275370164 2536 False 4686.000 4686 100.00000 1 2537 1 chr5B.!!$F1 2536
1 TraesCS5B01G147400 chr5B 530655040 530655566 526 True 337.000 337 78.86000 22 548 1 chr5B.!!$R2 526
2 TraesCS5B01G147400 chr5A 326432931 326434411 1480 False 523.550 1567 96.14175 851 2537 4 chr5A.!!$F1 1686
3 TraesCS5B01G147400 chr5D 230392822 230394353 1531 True 544.625 1561 94.91300 800 2340 4 chr5D.!!$R3 1540
4 TraesCS5B01G147400 chr5D 540828183 540828828 645 False 390.000 390 78.43100 24 658 1 chr5D.!!$F3 634
5 TraesCS5B01G147400 chr5D 345077759 345078346 587 True 350.000 350 78.17000 24 630 1 chr5D.!!$R1 606
6 TraesCS5B01G147400 chr7D 69289127 69289770 643 False 433.000 433 79.73000 21 654 1 chr7D.!!$F1 633

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
942 1106 0.109039 GAGAGCTCAGACCGTTGTCC 60.109 60.0 17.77 0.0 42.81 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1828 2001 0.671251 TTTACTGCGGGCAAAGGTTG 59.329 50.0 0.0 0.0 0.0 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 5.046231 GGAGTACTCCTTCCAAAGATCACTT 60.046 44.000 31.12 0.00 46.16 3.16
64 65 5.574970 ACTCCTTCCAAAGATCACTTCTT 57.425 39.130 0.00 0.00 46.92 2.52
101 102 3.177600 GTGGCACGCTACATGTGG 58.822 61.111 9.11 6.75 37.80 4.17
183 184 1.625616 ATCTCTTAAACCGTGCGTCG 58.374 50.000 0.00 0.00 39.52 5.12
217 218 3.117322 TGTTTTCACCCTTGGATTCCTCA 60.117 43.478 3.95 0.00 0.00 3.86
222 223 2.025981 CACCCTTGGATTCCTCATGTCA 60.026 50.000 3.95 0.00 0.00 3.58
258 260 8.331931 ACTAGATCCCATGTTGATAGGTTTTA 57.668 34.615 0.00 0.00 0.00 1.52
263 265 9.082313 GATCCCATGTTGATAGGTTTTAATGAT 57.918 33.333 0.00 0.00 0.00 2.45
300 319 0.591659 GAACAGGGAGCACGGTTTTC 59.408 55.000 0.00 0.00 0.00 2.29
301 320 0.822121 AACAGGGAGCACGGTTTTCC 60.822 55.000 0.00 0.13 0.00 3.13
304 323 2.434774 GGAGCACGGTTTTCCCCT 59.565 61.111 0.00 0.00 36.42 4.79
309 328 0.747852 GCACGGTTTTCCCCTTTTCA 59.252 50.000 0.00 0.00 36.42 2.69
313 332 2.956333 ACGGTTTTCCCCTTTTCAGAAG 59.044 45.455 0.00 0.00 36.42 2.85
314 333 2.288213 CGGTTTTCCCCTTTTCAGAAGC 60.288 50.000 0.00 0.00 36.42 3.86
315 334 2.037251 GGTTTTCCCCTTTTCAGAAGCC 59.963 50.000 0.00 0.00 0.00 4.35
317 336 0.476771 TTCCCCTTTTCAGAAGCCGT 59.523 50.000 0.00 0.00 0.00 5.68
318 337 0.476771 TCCCCTTTTCAGAAGCCGTT 59.523 50.000 0.00 0.00 0.00 4.44
319 338 1.133606 TCCCCTTTTCAGAAGCCGTTT 60.134 47.619 0.00 0.00 0.00 3.60
328 347 0.610687 AGAAGCCGTTTCTGAGAGGG 59.389 55.000 2.79 2.79 44.46 4.30
329 348 0.608640 GAAGCCGTTTCTGAGAGGGA 59.391 55.000 10.73 0.00 32.83 4.20
330 349 0.321996 AAGCCGTTTCTGAGAGGGAC 59.678 55.000 10.73 2.98 0.00 4.46
331 350 1.446272 GCCGTTTCTGAGAGGGACG 60.446 63.158 10.73 7.74 0.00 4.79
332 351 1.874345 GCCGTTTCTGAGAGGGACGA 61.874 60.000 10.73 0.00 35.90 4.20
333 352 0.109226 CCGTTTCTGAGAGGGACGAC 60.109 60.000 13.93 0.00 35.90 4.34
334 353 0.109226 CGTTTCTGAGAGGGACGACC 60.109 60.000 8.70 0.00 35.90 4.79
335 354 0.109226 GTTTCTGAGAGGGACGACCG 60.109 60.000 0.00 0.00 46.96 4.79
336 355 0.538977 TTTCTGAGAGGGACGACCGT 60.539 55.000 0.00 0.00 46.96 4.83
337 356 0.325933 TTCTGAGAGGGACGACCGTA 59.674 55.000 0.00 0.00 46.96 4.02
338 357 0.392193 TCTGAGAGGGACGACCGTAC 60.392 60.000 0.00 0.00 46.96 3.67
362 381 2.050442 CGGAAGCAAAACCGTGCC 60.050 61.111 0.00 0.00 46.14 5.01
368 387 0.465460 AGCAAAACCGTGCCTCTCAA 60.465 50.000 0.00 0.00 46.14 3.02
515 638 3.422876 ACGCTTTATTTTTCCGTTTTCGC 59.577 39.130 0.00 0.00 42.58 4.70
524 647 3.399770 CGTTTTCGCGAGGCACGA 61.400 61.111 24.19 0.15 45.77 4.35
555 678 2.482333 CGGAACCAAAACCGTGCCA 61.482 57.895 0.00 0.00 43.53 4.92
559 682 0.681564 AACCAAAACCGTGCCACTCA 60.682 50.000 0.00 0.00 0.00 3.41
560 683 0.467290 ACCAAAACCGTGCCACTCAT 60.467 50.000 0.00 0.00 0.00 2.90
561 684 0.673437 CCAAAACCGTGCCACTCATT 59.327 50.000 0.00 0.00 0.00 2.57
649 774 1.377202 GCCATGCCTCTCACGGAAA 60.377 57.895 0.00 0.00 26.83 3.13
702 827 5.409643 TTTTTGTCGAGAAGCTGAGAAAG 57.590 39.130 0.00 0.00 30.39 2.62
703 828 4.322080 TTTGTCGAGAAGCTGAGAAAGA 57.678 40.909 0.00 0.00 0.00 2.52
704 829 3.290308 TGTCGAGAAGCTGAGAAAGAC 57.710 47.619 0.00 0.00 0.00 3.01
705 830 2.029828 TGTCGAGAAGCTGAGAAAGACC 60.030 50.000 0.00 0.00 0.00 3.85
706 831 1.200252 TCGAGAAGCTGAGAAAGACCG 59.800 52.381 0.00 0.00 0.00 4.79
707 832 1.734047 CGAGAAGCTGAGAAAGACCGG 60.734 57.143 0.00 0.00 0.00 5.28
708 833 1.273886 GAGAAGCTGAGAAAGACCGGT 59.726 52.381 6.92 6.92 0.00 5.28
709 834 1.001406 AGAAGCTGAGAAAGACCGGTG 59.999 52.381 14.63 0.00 0.00 4.94
710 835 1.000955 GAAGCTGAGAAAGACCGGTGA 59.999 52.381 14.63 0.00 0.00 4.02
711 836 1.048601 AGCTGAGAAAGACCGGTGAA 58.951 50.000 14.63 0.00 0.00 3.18
712 837 1.416401 AGCTGAGAAAGACCGGTGAAA 59.584 47.619 14.63 0.00 0.00 2.69
713 838 2.158813 AGCTGAGAAAGACCGGTGAAAA 60.159 45.455 14.63 0.00 0.00 2.29
714 839 2.616842 GCTGAGAAAGACCGGTGAAAAA 59.383 45.455 14.63 0.00 0.00 1.94
715 840 3.548214 GCTGAGAAAGACCGGTGAAAAAC 60.548 47.826 14.63 0.00 0.00 2.43
716 841 2.946990 TGAGAAAGACCGGTGAAAAACC 59.053 45.455 14.63 0.00 46.60 3.27
763 888 9.646427 AAAATATATTTAAAGAGCCAAAACGCA 57.354 25.926 11.07 0.00 0.00 5.24
764 889 8.856490 AATATATTTAAAGAGCCAAAACGCAG 57.144 30.769 0.00 0.00 0.00 5.18
765 890 3.363341 TTTAAAGAGCCAAAACGCAGG 57.637 42.857 0.00 0.00 0.00 4.85
770 895 2.026879 GCCAAAACGCAGGCGAAA 59.973 55.556 21.62 0.00 41.70 3.46
771 896 1.590259 GCCAAAACGCAGGCGAAAA 60.590 52.632 21.62 0.00 41.70 2.29
772 897 1.148759 GCCAAAACGCAGGCGAAAAA 61.149 50.000 21.62 0.00 41.70 1.94
791 916 2.652941 AAAAGCGCAATACATGGTGG 57.347 45.000 11.47 0.00 0.00 4.61
792 917 0.173255 AAAGCGCAATACATGGTGGC 59.827 50.000 11.47 0.00 0.00 5.01
794 919 2.715005 CGCAATACATGGTGGCGG 59.285 61.111 12.72 0.00 43.63 6.13
795 920 2.412937 GCAATACATGGTGGCGGC 59.587 61.111 0.00 0.00 0.00 6.53
796 921 2.120909 GCAATACATGGTGGCGGCT 61.121 57.895 11.43 0.00 0.00 5.52
797 922 1.729276 CAATACATGGTGGCGGCTG 59.271 57.895 11.43 1.90 0.00 4.85
798 923 0.747644 CAATACATGGTGGCGGCTGA 60.748 55.000 11.43 0.00 0.00 4.26
799 924 0.464373 AATACATGGTGGCGGCTGAG 60.464 55.000 11.43 0.00 0.00 3.35
800 925 1.337384 ATACATGGTGGCGGCTGAGA 61.337 55.000 11.43 0.00 0.00 3.27
801 926 1.960040 TACATGGTGGCGGCTGAGAG 61.960 60.000 11.43 0.00 0.00 3.20
802 927 4.479993 ATGGTGGCGGCTGAGAGC 62.480 66.667 11.43 0.00 41.46 4.09
814 939 3.474570 GAGAGCCCGCCAGGTCAT 61.475 66.667 3.03 0.00 38.26 3.06
819 944 2.591753 CCCGCCAGGTCATGTCAT 59.408 61.111 0.00 0.00 35.12 3.06
942 1106 0.109039 GAGAGCTCAGACCGTTGTCC 60.109 60.000 17.77 0.00 42.81 4.02
953 1119 5.047943 TCAGACCGTTGTCCAAAAAGAAAAA 60.048 36.000 0.00 0.00 42.81 1.94
960 1126 7.744276 CCGTTGTCCAAAAAGAAAAAGAAAAAG 59.256 33.333 0.00 0.00 0.00 2.27
962 1128 9.811655 GTTGTCCAAAAAGAAAAAGAAAAAGAG 57.188 29.630 0.00 0.00 0.00 2.85
964 1130 9.423061 TGTCCAAAAAGAAAAAGAAAAAGAGAG 57.577 29.630 0.00 0.00 0.00 3.20
965 1131 9.639601 GTCCAAAAAGAAAAAGAAAAAGAGAGA 57.360 29.630 0.00 0.00 0.00 3.10
966 1132 9.860898 TCCAAAAAGAAAAAGAAAAAGAGAGAG 57.139 29.630 0.00 0.00 0.00 3.20
967 1133 9.860898 CCAAAAAGAAAAAGAAAAAGAGAGAGA 57.139 29.630 0.00 0.00 0.00 3.10
971 1137 9.898152 AAAGAAAAAGAAAAAGAGAGAGAGAGA 57.102 29.630 0.00 0.00 0.00 3.10
972 1138 9.546428 AAGAAAAAGAAAAAGAGAGAGAGAGAG 57.454 33.333 0.00 0.00 0.00 3.20
973 1139 8.923270 AGAAAAAGAAAAAGAGAGAGAGAGAGA 58.077 33.333 0.00 0.00 0.00 3.10
974 1140 9.196552 GAAAAAGAAAAAGAGAGAGAGAGAGAG 57.803 37.037 0.00 0.00 0.00 3.20
975 1141 8.477419 AAAAGAAAAAGAGAGAGAGAGAGAGA 57.523 34.615 0.00 0.00 0.00 3.10
976 1142 7.693969 AAGAAAAAGAGAGAGAGAGAGAGAG 57.306 40.000 0.00 0.00 0.00 3.20
977 1143 7.020827 AGAAAAAGAGAGAGAGAGAGAGAGA 57.979 40.000 0.00 0.00 0.00 3.10
978 1144 7.108847 AGAAAAAGAGAGAGAGAGAGAGAGAG 58.891 42.308 0.00 0.00 0.00 3.20
979 1145 6.627087 AAAAGAGAGAGAGAGAGAGAGAGA 57.373 41.667 0.00 0.00 0.00 3.10
980 1146 5.867903 AAGAGAGAGAGAGAGAGAGAGAG 57.132 47.826 0.00 0.00 0.00 3.20
981 1147 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
982 1148 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
983 1149 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1120 1286 2.023318 CGCCAACAAACCGGTAACA 58.977 52.632 8.00 0.00 0.00 2.41
1191 1357 7.254590 CCAATCTTCTCTTGCTAAATTACCTCG 60.255 40.741 0.00 0.00 0.00 4.63
1406 1572 2.355363 CCAACGCGGTCAACTCGA 60.355 61.111 12.47 0.00 0.00 4.04
1435 1601 1.890979 GTGTGTGCTCTGCTGCTGT 60.891 57.895 0.00 0.00 0.00 4.40
1476 1647 7.221259 GTGTTCTTGTTTAATACGCAGGTTTTT 59.779 33.333 0.00 0.00 0.00 1.94
1537 1709 5.708948 TGTGCCTAATTCACATGTTTTAGC 58.291 37.500 0.00 0.00 39.29 3.09
1540 1712 4.800471 GCCTAATTCACATGTTTTAGCAGC 59.200 41.667 0.00 1.37 0.00 5.25
1542 1714 6.389091 CCTAATTCACATGTTTTAGCAGCAA 58.611 36.000 0.00 0.00 0.00 3.91
1567 1739 7.036996 TCTTATGCACAATTGTCTTGTTTCA 57.963 32.000 8.48 0.00 0.00 2.69
1585 1757 6.910191 TGTTTCACATTACCCATGATATCCT 58.090 36.000 0.00 0.00 36.24 3.24
1694 1866 7.489113 GCCGATGATTCTTTTGTTTGACATTAT 59.511 33.333 0.00 0.00 0.00 1.28
1765 1937 4.755266 TTTAATCTAGCTGACACTCCCC 57.245 45.455 0.00 0.00 0.00 4.81
1810 1983 9.942526 ATTAATTTGGATCAAAGGGAGTATCTT 57.057 29.630 0.00 0.00 36.76 2.40
1839 2012 1.989706 TCCTTACACAACCTTTGCCC 58.010 50.000 0.00 0.00 0.00 5.36
1863 2036 5.454187 CGCAGTAAATCCAAATCCTACCCTA 60.454 44.000 0.00 0.00 0.00 3.53
1891 2064 6.269315 ACTGATTAGTGCACGAATCTAGAAG 58.731 40.000 36.41 29.90 38.34 2.85
1894 2067 1.134670 AGTGCACGAATCTAGAAGGGC 60.135 52.381 12.01 11.95 0.00 5.19
1958 2131 4.608269 TGCCCCAAAATTATCATCAGTGA 58.392 39.130 0.00 0.00 39.04 3.41
1984 2157 6.458232 AACACTAAGCTCGAGATGATAACT 57.542 37.500 18.75 0.00 0.00 2.24
1985 2158 7.569639 AACACTAAGCTCGAGATGATAACTA 57.430 36.000 18.75 0.00 0.00 2.24
1986 2159 6.961576 ACACTAAGCTCGAGATGATAACTAC 58.038 40.000 18.75 0.00 0.00 2.73
1987 2160 6.768861 ACACTAAGCTCGAGATGATAACTACT 59.231 38.462 18.75 0.00 0.00 2.57
1988 2161 7.283580 ACACTAAGCTCGAGATGATAACTACTT 59.716 37.037 18.75 8.15 0.00 2.24
1989 2162 8.775527 CACTAAGCTCGAGATGATAACTACTTA 58.224 37.037 18.75 8.87 0.00 2.24
1990 2163 8.776470 ACTAAGCTCGAGATGATAACTACTTAC 58.224 37.037 18.75 0.00 0.00 2.34
1991 2164 7.811117 AAGCTCGAGATGATAACTACTTACT 57.189 36.000 18.75 0.00 0.00 2.24
1992 2165 7.429636 AGCTCGAGATGATAACTACTTACTC 57.570 40.000 18.75 0.00 0.00 2.59
1993 2166 6.428771 AGCTCGAGATGATAACTACTTACTCC 59.571 42.308 18.75 0.00 0.00 3.85
1994 2167 6.619018 GCTCGAGATGATAACTACTTACTCCG 60.619 46.154 18.75 0.00 0.00 4.63
1995 2168 6.286758 TCGAGATGATAACTACTTACTCCGT 58.713 40.000 0.00 0.00 0.00 4.69
1996 2169 6.423302 TCGAGATGATAACTACTTACTCCGTC 59.577 42.308 0.00 0.00 0.00 4.79
1997 2170 6.347563 CGAGATGATAACTACTTACTCCGTCC 60.348 46.154 0.00 0.00 0.00 4.79
1998 2171 6.363065 AGATGATAACTACTTACTCCGTCCA 58.637 40.000 0.00 0.00 0.00 4.02
1999 2172 7.005296 AGATGATAACTACTTACTCCGTCCAT 58.995 38.462 0.00 0.00 0.00 3.41
2000 2173 8.162085 AGATGATAACTACTTACTCCGTCCATA 58.838 37.037 0.00 0.00 0.00 2.74
2001 2174 8.701908 ATGATAACTACTTACTCCGTCCATAA 57.298 34.615 0.00 0.00 0.00 1.90
2002 2175 8.701908 TGATAACTACTTACTCCGTCCATAAT 57.298 34.615 0.00 0.00 0.00 1.28
2003 2176 9.797642 TGATAACTACTTACTCCGTCCATAATA 57.202 33.333 0.00 0.00 0.00 0.98
2010 2183 7.828712 ACTTACTCCGTCCATAATATAAGAGC 58.171 38.462 0.00 0.00 0.00 4.09
2011 2184 7.450634 ACTTACTCCGTCCATAATATAAGAGCA 59.549 37.037 0.00 0.00 0.00 4.26
2012 2185 6.859112 ACTCCGTCCATAATATAAGAGCAT 57.141 37.500 0.00 0.00 0.00 3.79
2013 2186 7.246171 ACTCCGTCCATAATATAAGAGCATT 57.754 36.000 0.00 0.00 0.00 3.56
2014 2187 7.680730 ACTCCGTCCATAATATAAGAGCATTT 58.319 34.615 0.00 0.00 0.00 2.32
2015 2188 8.157476 ACTCCGTCCATAATATAAGAGCATTTT 58.843 33.333 0.00 0.00 0.00 1.82
2016 2189 8.918202 TCCGTCCATAATATAAGAGCATTTTT 57.082 30.769 0.00 0.00 0.00 1.94
2017 2190 8.783093 TCCGTCCATAATATAAGAGCATTTTTG 58.217 33.333 0.00 0.00 0.00 2.44
2018 2191 8.783093 CCGTCCATAATATAAGAGCATTTTTGA 58.217 33.333 0.00 0.00 0.00 2.69
2019 2192 9.599322 CGTCCATAATATAAGAGCATTTTTGAC 57.401 33.333 0.00 0.00 0.00 3.18
2027 2200 7.986085 ATAAGAGCATTTTTGACACTACACT 57.014 32.000 0.00 0.00 0.00 3.55
2029 2202 7.426929 AAGAGCATTTTTGACACTACACTAG 57.573 36.000 0.00 0.00 0.00 2.57
2030 2203 6.525629 AGAGCATTTTTGACACTACACTAGT 58.474 36.000 0.00 0.00 40.28 2.57
2062 2235 9.799106 AAACACTCTTATATTATGGGATGAAGG 57.201 33.333 0.00 0.00 0.00 3.46
2063 2236 7.922382 ACACTCTTATATTATGGGATGAAGGG 58.078 38.462 0.00 0.00 0.00 3.95
2064 2237 7.739444 ACACTCTTATATTATGGGATGAAGGGA 59.261 37.037 0.00 0.00 0.00 4.20
2065 2238 8.263640 CACTCTTATATTATGGGATGAAGGGAG 58.736 40.741 0.00 0.00 0.00 4.30
2078 2251 6.500751 GGGATGAAGGGAGTAGATACCAAATA 59.499 42.308 0.00 0.00 31.98 1.40
2107 2280 0.455410 GTGCAGTGCTGAACAAACCA 59.545 50.000 17.60 0.00 38.99 3.67
2149 2322 6.144724 GCTATGAGCACTCGGTATTTCTAAAG 59.855 42.308 0.00 0.00 41.89 1.85
2340 2571 8.257602 TGTAAAGGTATCAATGTAGCCATCTA 57.742 34.615 0.00 0.00 0.00 1.98
2341 2572 8.148351 TGTAAAGGTATCAATGTAGCCATCTAC 58.852 37.037 0.00 0.00 44.22 2.59
2342 2573 7.380423 AAAGGTATCAATGTAGCCATCTACT 57.620 36.000 4.39 0.00 44.26 2.57
2343 2574 7.380423 AAGGTATCAATGTAGCCATCTACTT 57.620 36.000 4.39 0.00 44.26 2.24
2344 2575 6.998802 AGGTATCAATGTAGCCATCTACTTC 58.001 40.000 4.39 0.00 44.26 3.01
2345 2576 6.014156 AGGTATCAATGTAGCCATCTACTTCC 60.014 42.308 4.39 0.00 44.26 3.46
2346 2577 6.014156 GGTATCAATGTAGCCATCTACTTCCT 60.014 42.308 4.39 0.00 44.26 3.36
2347 2578 5.537300 TCAATGTAGCCATCTACTTCCTC 57.463 43.478 4.39 0.00 44.26 3.71
2348 2579 4.345257 TCAATGTAGCCATCTACTTCCTCC 59.655 45.833 4.39 0.00 44.26 4.30
2349 2580 2.307768 TGTAGCCATCTACTTCCTCCG 58.692 52.381 4.39 0.00 44.26 4.63
2350 2581 2.308690 GTAGCCATCTACTTCCTCCGT 58.691 52.381 0.00 0.00 41.47 4.69
2351 2582 1.867363 AGCCATCTACTTCCTCCGTT 58.133 50.000 0.00 0.00 0.00 4.44
2352 2583 1.757699 AGCCATCTACTTCCTCCGTTC 59.242 52.381 0.00 0.00 0.00 3.95
2353 2584 1.202545 GCCATCTACTTCCTCCGTTCC 60.203 57.143 0.00 0.00 0.00 3.62
2354 2585 2.389715 CCATCTACTTCCTCCGTTCCT 58.610 52.381 0.00 0.00 0.00 3.36
2355 2586 3.563223 CCATCTACTTCCTCCGTTCCTA 58.437 50.000 0.00 0.00 0.00 2.94
2356 2587 3.958798 CCATCTACTTCCTCCGTTCCTAA 59.041 47.826 0.00 0.00 0.00 2.69
2357 2588 4.404715 CCATCTACTTCCTCCGTTCCTAAA 59.595 45.833 0.00 0.00 0.00 1.85
2358 2589 5.070580 CCATCTACTTCCTCCGTTCCTAAAT 59.929 44.000 0.00 0.00 0.00 1.40
2359 2590 6.267014 CCATCTACTTCCTCCGTTCCTAAATA 59.733 42.308 0.00 0.00 0.00 1.40
2360 2591 7.038941 CCATCTACTTCCTCCGTTCCTAAATAT 60.039 40.741 0.00 0.00 0.00 1.28
2361 2592 7.909485 TCTACTTCCTCCGTTCCTAAATATT 57.091 36.000 0.00 0.00 0.00 1.28
2362 2593 8.315220 TCTACTTCCTCCGTTCCTAAATATTT 57.685 34.615 5.89 5.89 0.00 1.40
2363 2594 8.202137 TCTACTTCCTCCGTTCCTAAATATTTG 58.798 37.037 11.05 1.40 0.00 2.32
2364 2595 6.718294 ACTTCCTCCGTTCCTAAATATTTGT 58.282 36.000 11.05 0.00 0.00 2.83
2365 2596 6.822170 ACTTCCTCCGTTCCTAAATATTTGTC 59.178 38.462 11.05 0.00 0.00 3.18
2366 2597 6.555463 TCCTCCGTTCCTAAATATTTGTCT 57.445 37.500 11.05 0.00 0.00 3.41
2367 2598 6.954232 TCCTCCGTTCCTAAATATTTGTCTT 58.046 36.000 11.05 0.00 0.00 3.01
2368 2599 7.399634 TCCTCCGTTCCTAAATATTTGTCTTT 58.600 34.615 11.05 0.00 0.00 2.52
2369 2600 7.886446 TCCTCCGTTCCTAAATATTTGTCTTTT 59.114 33.333 11.05 0.00 0.00 2.27
2370 2601 8.520351 CCTCCGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
2387 2618 9.965824 TTGTCTTTTTAGAGATTTCAAATGGAC 57.034 29.630 0.00 0.00 0.00 4.02
2388 2619 9.354673 TGTCTTTTTAGAGATTTCAAATGGACT 57.645 29.630 0.00 0.00 0.00 3.85
2404 2635 3.900971 TGGACTACCACATACGGATGTA 58.099 45.455 14.23 0.00 44.82 2.29
2405 2636 4.476297 TGGACTACCACATACGGATGTAT 58.524 43.478 14.23 7.46 44.82 2.29
2406 2637 5.633117 TGGACTACCACATACGGATGTATA 58.367 41.667 14.23 8.27 44.82 1.47
2407 2638 6.250711 TGGACTACCACATACGGATGTATAT 58.749 40.000 14.23 4.37 44.82 0.86
2408 2639 7.404481 TGGACTACCACATACGGATGTATATA 58.596 38.462 14.23 5.36 44.82 0.86
2409 2640 7.555195 TGGACTACCACATACGGATGTATATAG 59.445 40.741 14.23 16.35 44.82 1.31
2410 2641 7.772292 GGACTACCACATACGGATGTATATAGA 59.228 40.741 22.62 5.04 44.82 1.98
2411 2642 8.503458 ACTACCACATACGGATGTATATAGAC 57.497 38.462 22.62 0.00 44.82 2.59
2412 2643 8.105197 ACTACCACATACGGATGTATATAGACA 58.895 37.037 22.62 2.07 44.82 3.41
2413 2644 7.956328 ACCACATACGGATGTATATAGACAT 57.044 36.000 14.23 12.70 44.82 3.06
2415 2646 8.900781 ACCACATACGGATGTATATAGACATAC 58.099 37.037 14.23 12.39 44.82 2.39
2416 2647 9.121658 CCACATACGGATGTATATAGACATACT 57.878 37.037 14.23 9.55 44.82 2.12
2444 2675 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
2445 2676 6.471146 AGTGTAGATTCACTCATTTTGCTCT 58.529 36.000 0.00 0.00 44.07 4.09
2446 2677 6.370994 AGTGTAGATTCACTCATTTTGCTCTG 59.629 38.462 0.00 0.00 44.07 3.35
2447 2678 6.148480 GTGTAGATTCACTCATTTTGCTCTGT 59.852 38.462 0.00 0.00 35.68 3.41
2448 2679 7.331934 GTGTAGATTCACTCATTTTGCTCTGTA 59.668 37.037 0.00 0.00 35.68 2.74
2449 2680 8.043113 TGTAGATTCACTCATTTTGCTCTGTAT 58.957 33.333 0.00 0.00 0.00 2.29
2450 2681 7.317842 AGATTCACTCATTTTGCTCTGTATG 57.682 36.000 0.00 0.00 0.00 2.39
2451 2682 6.883217 AGATTCACTCATTTTGCTCTGTATGT 59.117 34.615 0.00 0.00 0.00 2.29
2452 2683 8.043113 AGATTCACTCATTTTGCTCTGTATGTA 58.957 33.333 0.00 0.00 0.00 2.29
2453 2684 7.601073 TTCACTCATTTTGCTCTGTATGTAG 57.399 36.000 0.00 0.00 0.00 2.74
2454 2685 6.701340 TCACTCATTTTGCTCTGTATGTAGT 58.299 36.000 0.00 0.00 0.00 2.73
2455 2686 6.813649 TCACTCATTTTGCTCTGTATGTAGTC 59.186 38.462 0.00 0.00 0.00 2.59
2456 2687 6.591448 CACTCATTTTGCTCTGTATGTAGTCA 59.409 38.462 0.00 0.00 0.00 3.41
2457 2688 6.591834 ACTCATTTTGCTCTGTATGTAGTCAC 59.408 38.462 0.00 0.00 0.00 3.67
2458 2689 6.701340 TCATTTTGCTCTGTATGTAGTCACT 58.299 36.000 0.00 0.00 0.00 3.41
2459 2690 7.161404 TCATTTTGCTCTGTATGTAGTCACTT 58.839 34.615 0.00 0.00 0.00 3.16
2460 2691 6.785488 TTTTGCTCTGTATGTAGTCACTTG 57.215 37.500 0.00 0.00 0.00 3.16
2461 2692 5.468540 TTGCTCTGTATGTAGTCACTTGT 57.531 39.130 0.00 0.00 0.00 3.16
2462 2693 5.468540 TGCTCTGTATGTAGTCACTTGTT 57.531 39.130 0.00 0.00 0.00 2.83
2463 2694 5.230182 TGCTCTGTATGTAGTCACTTGTTG 58.770 41.667 0.00 0.00 0.00 3.33
2464 2695 5.010617 TGCTCTGTATGTAGTCACTTGTTGA 59.989 40.000 0.00 0.00 0.00 3.18
2465 2696 5.926542 GCTCTGTATGTAGTCACTTGTTGAA 59.073 40.000 0.00 0.00 35.39 2.69
2466 2697 6.423905 GCTCTGTATGTAGTCACTTGTTGAAA 59.576 38.462 0.00 0.00 35.39 2.69
2467 2698 7.118390 GCTCTGTATGTAGTCACTTGTTGAAAT 59.882 37.037 0.00 0.00 35.39 2.17
2468 2699 8.534333 TCTGTATGTAGTCACTTGTTGAAATC 57.466 34.615 0.00 0.00 35.39 2.17
2469 2700 8.367911 TCTGTATGTAGTCACTTGTTGAAATCT 58.632 33.333 0.00 0.00 35.39 2.40
2470 2701 8.534333 TGTATGTAGTCACTTGTTGAAATCTC 57.466 34.615 0.00 0.00 35.39 2.75
2471 2702 8.367911 TGTATGTAGTCACTTGTTGAAATCTCT 58.632 33.333 0.00 0.00 35.39 3.10
2472 2703 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
2473 2704 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
2474 2705 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
2475 2706 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
2476 2707 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
2477 2708 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
2478 2709 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
2479 2710 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
2480 2711 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
2481 2712 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
2482 2713 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
2495 2726 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
2496 2727 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
2497 2728 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
2498 2729 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
2499 2730 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
2500 2731 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
2501 2732 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
2502 2733 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
2503 2734 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 9.793259 AGTACTCCTCAATTAGTGATTTTGAAA 57.207 29.630 0.00 0.00 35.07 2.69
19 20 9.436957 GAGTACTCCTCAATTAGTGATTTTGAA 57.563 33.333 12.13 0.00 40.17 2.69
61 62 1.971357 GTCACAACCTGAGGAGGAAGA 59.029 52.381 4.99 0.00 42.93 2.87
64 65 1.694150 CTTGTCACAACCTGAGGAGGA 59.306 52.381 4.99 0.00 42.93 3.71
101 102 1.298859 CTAGGTTGCGACAAGTGGCC 61.299 60.000 6.39 0.00 33.12 5.36
183 184 6.013842 AGGGTGAAAACAATTCGAGATTTC 57.986 37.500 0.00 0.00 0.00 2.17
194 195 3.895041 GAGGAATCCAAGGGTGAAAACAA 59.105 43.478 0.61 0.00 0.00 2.83
205 206 6.376299 TGAAATCTTGACATGAGGAATCCAAG 59.624 38.462 0.61 0.00 34.11 3.61
217 218 7.890127 TGGGATCTAGTTTTGAAATCTTGACAT 59.110 33.333 3.04 0.00 0.00 3.06
222 223 8.526147 CAACATGGGATCTAGTTTTGAAATCTT 58.474 33.333 0.00 0.00 0.00 2.40
300 319 1.269723 GAAACGGCTTCTGAAAAGGGG 59.730 52.381 0.00 0.00 0.00 4.79
301 320 2.230660 AGAAACGGCTTCTGAAAAGGG 58.769 47.619 1.58 0.00 43.09 3.95
309 328 0.610687 CCCTCTCAGAAACGGCTTCT 59.389 55.000 0.00 0.00 45.80 2.85
313 332 1.446272 CGTCCCTCTCAGAAACGGC 60.446 63.158 0.00 0.00 0.00 5.68
314 333 0.109226 GTCGTCCCTCTCAGAAACGG 60.109 60.000 4.58 0.00 34.30 4.44
315 334 0.109226 GGTCGTCCCTCTCAGAAACG 60.109 60.000 0.00 0.00 34.80 3.60
317 336 0.538977 ACGGTCGTCCCTCTCAGAAA 60.539 55.000 0.00 0.00 0.00 2.52
318 337 0.325933 TACGGTCGTCCCTCTCAGAA 59.674 55.000 0.00 0.00 0.00 3.02
319 338 0.392193 GTACGGTCGTCCCTCTCAGA 60.392 60.000 0.00 0.00 0.00 3.27
321 340 1.377725 GGTACGGTCGTCCCTCTCA 60.378 63.158 0.00 0.00 0.00 3.27
322 341 1.077858 AGGTACGGTCGTCCCTCTC 60.078 63.158 1.72 0.00 27.46 3.20
323 342 1.077858 GAGGTACGGTCGTCCCTCT 60.078 63.158 22.25 7.45 44.63 3.69
324 343 3.507290 GAGGTACGGTCGTCCCTC 58.493 66.667 16.97 16.97 42.51 4.30
325 344 1.077858 GAGAGGTACGGTCGTCCCT 60.078 63.158 7.35 7.35 37.15 4.20
326 345 2.467826 CGAGAGGTACGGTCGTCCC 61.468 68.421 0.00 0.00 34.54 4.46
327 346 3.096791 CGAGAGGTACGGTCGTCC 58.903 66.667 0.00 1.91 34.54 4.79
328 347 2.402787 GCGAGAGGTACGGTCGTC 59.597 66.667 0.00 0.00 39.88 4.20
329 348 3.494336 CGCGAGAGGTACGGTCGT 61.494 66.667 0.00 0.69 39.88 4.34
330 349 4.233635 CCGCGAGAGGTACGGTCG 62.234 72.222 8.23 5.93 42.01 4.79
331 350 2.320339 CTTCCGCGAGAGGTACGGTC 62.320 65.000 8.23 0.00 46.92 4.79
332 351 2.360350 TTCCGCGAGAGGTACGGT 60.360 61.111 8.23 0.00 46.92 4.83
334 353 2.278013 GCTTCCGCGAGAGGTACG 60.278 66.667 8.23 0.00 0.00 3.67
335 354 0.389426 TTTGCTTCCGCGAGAGGTAC 60.389 55.000 8.23 0.00 39.65 3.34
336 355 0.319083 TTTTGCTTCCGCGAGAGGTA 59.681 50.000 8.23 0.00 39.65 3.08
337 356 1.070786 TTTTGCTTCCGCGAGAGGT 59.929 52.632 8.23 0.00 39.65 3.85
338 357 1.497722 GTTTTGCTTCCGCGAGAGG 59.502 57.895 8.23 4.88 39.65 3.69
339 358 1.497722 GGTTTTGCTTCCGCGAGAG 59.502 57.895 8.23 5.93 39.65 3.20
340 359 2.314647 CGGTTTTGCTTCCGCGAGA 61.315 57.895 8.23 0.00 40.28 4.04
341 360 2.173382 CGGTTTTGCTTCCGCGAG 59.827 61.111 8.23 0.00 40.28 5.03
347 366 0.238553 GAGAGGCACGGTTTTGCTTC 59.761 55.000 0.28 0.28 46.31 3.86
353 372 0.472471 TTCCTTGAGAGGCACGGTTT 59.528 50.000 0.00 0.00 43.21 3.27
426 546 0.247854 GAGAGGCGCGAATTTGCTTC 60.248 55.000 12.10 10.09 37.46 3.86
489 612 6.895564 CGAAAACGGAAAAATAAAGCGTTTTT 59.104 30.769 6.02 0.00 40.40 1.94
497 620 4.220572 CCTCGCGAAAACGGAAAAATAAA 58.779 39.130 11.33 0.00 0.00 1.40
500 623 1.664874 GCCTCGCGAAAACGGAAAAAT 60.665 47.619 15.64 0.00 0.00 1.82
524 647 2.981909 TTCCGCGAGAGACACGGT 60.982 61.111 8.23 0.00 46.92 4.83
530 653 0.601841 GGTTTTGGTTCCGCGAGAGA 60.602 55.000 8.23 0.00 0.00 3.10
542 665 0.673437 AATGAGTGGCACGGTTTTGG 59.327 50.000 12.71 0.00 0.00 3.28
626 751 0.883833 CGTGAGAGGCATGGCTTTTT 59.116 50.000 24.18 12.14 0.00 1.94
680 805 5.006746 GTCTTTCTCAGCTTCTCGACAAAAA 59.993 40.000 0.00 0.00 0.00 1.94
681 806 4.508124 GTCTTTCTCAGCTTCTCGACAAAA 59.492 41.667 0.00 0.00 0.00 2.44
682 807 4.051922 GTCTTTCTCAGCTTCTCGACAAA 58.948 43.478 0.00 0.00 0.00 2.83
683 808 3.553096 GGTCTTTCTCAGCTTCTCGACAA 60.553 47.826 0.00 0.00 0.00 3.18
684 809 2.029828 GGTCTTTCTCAGCTTCTCGACA 60.030 50.000 0.00 0.00 0.00 4.35
685 810 2.601804 GGTCTTTCTCAGCTTCTCGAC 58.398 52.381 0.00 0.00 0.00 4.20
686 811 1.200252 CGGTCTTTCTCAGCTTCTCGA 59.800 52.381 0.00 0.00 0.00 4.04
687 812 1.623359 CGGTCTTTCTCAGCTTCTCG 58.377 55.000 0.00 0.00 0.00 4.04
688 813 1.273886 ACCGGTCTTTCTCAGCTTCTC 59.726 52.381 0.00 0.00 0.00 2.87
689 814 1.001406 CACCGGTCTTTCTCAGCTTCT 59.999 52.381 2.59 0.00 0.00 2.85
690 815 1.000955 TCACCGGTCTTTCTCAGCTTC 59.999 52.381 2.59 0.00 0.00 3.86
691 816 1.048601 TCACCGGTCTTTCTCAGCTT 58.951 50.000 2.59 0.00 0.00 3.74
692 817 1.048601 TTCACCGGTCTTTCTCAGCT 58.951 50.000 2.59 0.00 0.00 4.24
693 818 1.878953 TTTCACCGGTCTTTCTCAGC 58.121 50.000 2.59 0.00 0.00 4.26
694 819 3.003378 GGTTTTTCACCGGTCTTTCTCAG 59.997 47.826 2.59 0.00 35.12 3.35
695 820 2.946990 GGTTTTTCACCGGTCTTTCTCA 59.053 45.455 2.59 0.00 35.12 3.27
696 821 3.620929 GGTTTTTCACCGGTCTTTCTC 57.379 47.619 2.59 0.00 35.12 2.87
737 862 9.646427 TGCGTTTTGGCTCTTTAAATATATTTT 57.354 25.926 15.64 1.43 0.00 1.82
738 863 9.301153 CTGCGTTTTGGCTCTTTAAATATATTT 57.699 29.630 14.86 14.86 0.00 1.40
739 864 7.920682 CCTGCGTTTTGGCTCTTTAAATATATT 59.079 33.333 0.00 0.00 0.00 1.28
740 865 7.425606 CCTGCGTTTTGGCTCTTTAAATATAT 58.574 34.615 0.00 0.00 0.00 0.86
741 866 6.679392 GCCTGCGTTTTGGCTCTTTAAATATA 60.679 38.462 0.00 0.00 45.26 0.86
742 867 5.650543 CCTGCGTTTTGGCTCTTTAAATAT 58.349 37.500 0.00 0.00 0.00 1.28
743 868 4.617298 GCCTGCGTTTTGGCTCTTTAAATA 60.617 41.667 0.00 0.00 45.26 1.40
744 869 3.860754 GCCTGCGTTTTGGCTCTTTAAAT 60.861 43.478 0.00 0.00 45.26 1.40
745 870 2.544903 GCCTGCGTTTTGGCTCTTTAAA 60.545 45.455 0.00 0.00 45.26 1.52
746 871 1.000717 GCCTGCGTTTTGGCTCTTTAA 60.001 47.619 0.00 0.00 45.26 1.52
747 872 0.596082 GCCTGCGTTTTGGCTCTTTA 59.404 50.000 0.00 0.00 45.26 1.85
748 873 1.363807 GCCTGCGTTTTGGCTCTTT 59.636 52.632 0.00 0.00 45.26 2.52
749 874 2.908073 CGCCTGCGTTTTGGCTCTT 61.908 57.895 2.83 0.00 46.42 2.85
750 875 3.357079 CGCCTGCGTTTTGGCTCT 61.357 61.111 2.83 0.00 46.42 4.09
751 876 2.400896 TTTCGCCTGCGTTTTGGCTC 62.401 55.000 11.68 0.00 46.42 4.70
752 877 2.010582 TTTTCGCCTGCGTTTTGGCT 62.011 50.000 11.68 0.00 46.42 4.75
753 878 1.148759 TTTTTCGCCTGCGTTTTGGC 61.149 50.000 11.68 0.00 45.25 4.52
754 879 2.964911 TTTTTCGCCTGCGTTTTGG 58.035 47.368 11.68 0.00 40.74 3.28
771 896 2.930455 GCCACCATGTATTGCGCTTTTT 60.930 45.455 9.73 0.00 0.00 1.94
772 897 1.404047 GCCACCATGTATTGCGCTTTT 60.404 47.619 9.73 0.00 0.00 2.27
773 898 0.173255 GCCACCATGTATTGCGCTTT 59.827 50.000 9.73 0.00 0.00 3.51
774 899 1.809207 GCCACCATGTATTGCGCTT 59.191 52.632 9.73 0.00 0.00 4.68
775 900 2.472059 CGCCACCATGTATTGCGCT 61.472 57.895 9.73 0.00 38.69 5.92
776 901 2.024588 CGCCACCATGTATTGCGC 59.975 61.111 0.00 0.00 38.69 6.09
777 902 2.715005 CCGCCACCATGTATTGCG 59.285 61.111 8.59 8.59 44.47 4.85
778 903 2.120909 AGCCGCCACCATGTATTGC 61.121 57.895 0.00 0.00 0.00 3.56
779 904 0.747644 TCAGCCGCCACCATGTATTG 60.748 55.000 0.00 0.00 0.00 1.90
780 905 0.464373 CTCAGCCGCCACCATGTATT 60.464 55.000 0.00 0.00 0.00 1.89
781 906 1.146930 CTCAGCCGCCACCATGTAT 59.853 57.895 0.00 0.00 0.00 2.29
782 907 1.960040 CTCTCAGCCGCCACCATGTA 61.960 60.000 0.00 0.00 0.00 2.29
783 908 3.320879 CTCTCAGCCGCCACCATGT 62.321 63.158 0.00 0.00 0.00 3.21
784 909 2.513204 CTCTCAGCCGCCACCATG 60.513 66.667 0.00 0.00 0.00 3.66
785 910 4.479993 GCTCTCAGCCGCCACCAT 62.480 66.667 0.00 0.00 34.48 3.55
795 920 4.154347 GACCTGGCGGGCTCTCAG 62.154 72.222 13.63 0.00 39.10 3.35
797 922 3.474570 ATGACCTGGCGGGCTCTC 61.475 66.667 13.63 3.05 39.94 3.20
798 923 3.790437 CATGACCTGGCGGGCTCT 61.790 66.667 13.63 0.00 39.94 4.09
799 924 4.101448 ACATGACCTGGCGGGCTC 62.101 66.667 13.63 9.99 39.94 4.70
800 925 4.101448 GACATGACCTGGCGGGCT 62.101 66.667 13.63 0.00 39.94 5.19
801 926 3.704231 ATGACATGACCTGGCGGGC 62.704 63.158 13.63 6.03 39.55 6.13
802 927 0.680921 AAATGACATGACCTGGCGGG 60.681 55.000 11.83 11.83 34.57 6.13
803 928 0.452987 CAAATGACATGACCTGGCGG 59.547 55.000 0.00 0.00 34.57 6.13
804 929 1.135603 CACAAATGACATGACCTGGCG 60.136 52.381 0.00 0.00 34.57 5.69
805 930 1.888512 ACACAAATGACATGACCTGGC 59.111 47.619 0.00 0.00 0.00 4.85
806 931 5.183713 ACATTACACAAATGACATGACCTGG 59.816 40.000 0.00 0.00 46.81 4.45
807 932 6.149973 AGACATTACACAAATGACATGACCTG 59.850 38.462 0.00 0.00 46.81 4.00
808 933 6.149973 CAGACATTACACAAATGACATGACCT 59.850 38.462 0.00 0.00 46.81 3.85
811 936 8.614469 TTACAGACATTACACAAATGACATGA 57.386 30.769 0.00 0.00 46.81 3.07
814 939 9.676195 CAAATTACAGACATTACACAAATGACA 57.324 29.630 4.82 0.00 46.81 3.58
819 944 8.569641 GGGTACAAATTACAGACATTACACAAA 58.430 33.333 0.00 0.00 0.00 2.83
953 1119 7.020827 TCTCTCTCTCTCTCTCTCTTTTTCT 57.979 40.000 0.00 0.00 0.00 2.52
960 1126 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
962 1128 4.261994 GCTCTCTCTCTCTCTCTCTCTCTC 60.262 54.167 0.00 0.00 0.00 3.20
964 1130 3.640967 AGCTCTCTCTCTCTCTCTCTCTC 59.359 52.174 0.00 0.00 0.00 3.20
965 1131 3.640967 GAGCTCTCTCTCTCTCTCTCTCT 59.359 52.174 6.43 0.00 36.42 3.10
966 1132 3.386078 TGAGCTCTCTCTCTCTCTCTCTC 59.614 52.174 16.19 0.00 40.03 3.20
967 1133 3.378512 TGAGCTCTCTCTCTCTCTCTCT 58.621 50.000 16.19 0.00 40.03 3.10
968 1134 3.386078 TCTGAGCTCTCTCTCTCTCTCTC 59.614 52.174 16.19 0.00 40.03 3.20
969 1135 3.378512 TCTGAGCTCTCTCTCTCTCTCT 58.621 50.000 16.19 0.00 40.03 3.10
970 1136 3.827008 TCTGAGCTCTCTCTCTCTCTC 57.173 52.381 16.19 0.00 40.03 3.20
971 1137 3.244009 CGATCTGAGCTCTCTCTCTCTCT 60.244 52.174 16.19 0.00 40.03 3.10
972 1138 3.062763 CGATCTGAGCTCTCTCTCTCTC 58.937 54.545 16.19 0.18 40.03 3.20
973 1139 2.224378 CCGATCTGAGCTCTCTCTCTCT 60.224 54.545 16.19 0.00 40.03 3.10
974 1140 2.146342 CCGATCTGAGCTCTCTCTCTC 58.854 57.143 16.19 2.68 40.03 3.20
975 1141 1.768275 TCCGATCTGAGCTCTCTCTCT 59.232 52.381 16.19 0.00 40.03 3.10
976 1142 2.146342 CTCCGATCTGAGCTCTCTCTC 58.854 57.143 16.19 5.76 40.03 3.20
977 1143 1.768275 TCTCCGATCTGAGCTCTCTCT 59.232 52.381 16.19 0.00 40.03 3.10
978 1144 2.254546 TCTCCGATCTGAGCTCTCTC 57.745 55.000 16.19 7.87 39.78 3.20
979 1145 2.172505 TCTTCTCCGATCTGAGCTCTCT 59.827 50.000 16.19 0.00 32.22 3.10
980 1146 2.571212 TCTTCTCCGATCTGAGCTCTC 58.429 52.381 16.19 3.15 32.22 3.20
981 1147 2.727123 TCTTCTCCGATCTGAGCTCT 57.273 50.000 16.19 0.00 32.22 4.09
982 1148 2.030007 CCATCTTCTCCGATCTGAGCTC 60.030 54.545 6.82 6.82 32.22 4.09
983 1149 1.962807 CCATCTTCTCCGATCTGAGCT 59.037 52.381 9.15 0.00 32.22 4.09
1035 1201 2.679716 GATTCCAGCTGCCCACCT 59.320 61.111 8.66 0.00 0.00 4.00
1120 1286 7.687941 ATTTTGAGTAGATCGTTGGTTGATT 57.312 32.000 0.00 0.00 0.00 2.57
1205 1371 0.251832 TCCTTCTTCGCCCTCTCTGT 60.252 55.000 0.00 0.00 0.00 3.41
1247 1413 2.278206 CACGAGATGACCGGCGAG 60.278 66.667 9.30 0.06 0.00 5.03
1406 1572 0.767375 AGCACACACACCTTGAGGAT 59.233 50.000 3.59 0.00 38.94 3.24
1435 1601 4.982241 AGAACACAAGAGAAATGGAGGA 57.018 40.909 0.00 0.00 0.00 3.71
1498 1669 4.881920 AGGCACATCCATTTTGTAACAAC 58.118 39.130 0.00 0.00 37.29 3.32
1515 1686 5.708948 TGCTAAAACATGTGAATTAGGCAC 58.291 37.500 19.67 9.82 36.81 5.01
1537 1709 5.647589 AGACAATTGTGCATAAGATTGCTG 58.352 37.500 17.58 0.10 43.18 4.41
1540 1712 7.878477 AACAAGACAATTGTGCATAAGATTG 57.122 32.000 17.58 9.58 36.00 2.67
1542 1714 7.596248 GTGAAACAAGACAATTGTGCATAAGAT 59.404 33.333 17.58 0.00 36.32 2.40
1567 1739 8.278639 TGTTACAAAGGATATCATGGGTAATGT 58.721 33.333 13.72 6.15 37.56 2.71
1644 1816 8.031277 GGCTCAAAACAGAAAAGATTCATACAT 58.969 33.333 0.00 0.00 38.06 2.29
1645 1817 7.370383 GGCTCAAAACAGAAAAGATTCATACA 58.630 34.615 0.00 0.00 38.06 2.29
1652 1824 4.761739 TCATCGGCTCAAAACAGAAAAGAT 59.238 37.500 0.00 0.00 0.00 2.40
1694 1866 1.410882 TGTCGCAACGGATATCATGGA 59.589 47.619 4.83 0.00 0.00 3.41
1704 1876 0.508641 CTGAAGAACTGTCGCAACGG 59.491 55.000 0.00 0.00 37.81 4.44
1798 1971 7.699878 AGGAAAACATTACAAGATACTCCCTT 58.300 34.615 0.00 0.00 0.00 3.95
1810 1983 7.648039 AAGGTTGTGTAAGGAAAACATTACA 57.352 32.000 0.00 0.00 39.06 2.41
1828 2001 0.671251 TTTACTGCGGGCAAAGGTTG 59.329 50.000 0.00 0.00 0.00 3.77
1839 2012 3.564225 GGGTAGGATTTGGATTTACTGCG 59.436 47.826 0.00 0.00 0.00 5.18
1863 2036 8.414003 TCTAGATTCGTGCACTAATCAGTTTAT 58.586 33.333 33.11 20.14 35.07 1.40
1891 2064 7.151976 ATAAAACTATTTATGGCATTTCGCCC 58.848 34.615 4.78 0.00 45.20 6.13
1911 2084 9.487790 CAAAAGAGCCAACCAGATAAAATAAAA 57.512 29.630 0.00 0.00 0.00 1.52
1914 2087 6.630071 GCAAAAGAGCCAACCAGATAAAATA 58.370 36.000 0.00 0.00 0.00 1.40
1915 2088 5.482006 GCAAAAGAGCCAACCAGATAAAAT 58.518 37.500 0.00 0.00 0.00 1.82
1958 2131 8.634444 AGTTATCATCTCGAGCTTAGTGTTATT 58.366 33.333 7.81 0.00 0.00 1.40
1968 2141 6.428771 GGAGTAAGTAGTTATCATCTCGAGCT 59.571 42.308 7.81 0.00 0.00 4.09
1990 2163 8.553459 AAAATGCTCTTATATTATGGACGGAG 57.447 34.615 0.00 0.00 0.00 4.63
1991 2164 8.783093 CAAAAATGCTCTTATATTATGGACGGA 58.217 33.333 0.00 0.00 0.00 4.69
1992 2165 8.783093 TCAAAAATGCTCTTATATTATGGACGG 58.217 33.333 0.00 0.00 0.00 4.79
1993 2166 9.599322 GTCAAAAATGCTCTTATATTATGGACG 57.401 33.333 0.00 0.00 0.00 4.79
2001 2174 9.672673 AGTGTAGTGTCAAAAATGCTCTTATAT 57.327 29.630 0.00 0.00 0.00 0.86
2003 2176 7.986085 AGTGTAGTGTCAAAAATGCTCTTAT 57.014 32.000 0.00 0.00 0.00 1.73
2004 2177 8.148351 ACTAGTGTAGTGTCAAAAATGCTCTTA 58.852 33.333 0.00 0.00 37.69 2.10
2005 2178 6.992715 ACTAGTGTAGTGTCAAAAATGCTCTT 59.007 34.615 0.00 0.00 37.69 2.85
2006 2179 6.525629 ACTAGTGTAGTGTCAAAAATGCTCT 58.474 36.000 0.00 0.00 37.69 4.09
2007 2180 6.787085 ACTAGTGTAGTGTCAAAAATGCTC 57.213 37.500 0.00 0.00 37.69 4.26
2036 2209 9.799106 CCTTCATCCCATAATATAAGAGTGTTT 57.201 33.333 0.00 0.00 0.00 2.83
2037 2210 8.386264 CCCTTCATCCCATAATATAAGAGTGTT 58.614 37.037 0.00 0.00 0.00 3.32
2038 2211 7.739444 TCCCTTCATCCCATAATATAAGAGTGT 59.261 37.037 0.00 0.00 0.00 3.55
2039 2212 8.150827 TCCCTTCATCCCATAATATAAGAGTG 57.849 38.462 0.00 0.00 0.00 3.51
2040 2213 7.964293 ACTCCCTTCATCCCATAATATAAGAGT 59.036 37.037 0.00 0.00 0.00 3.24
2041 2214 8.386012 ACTCCCTTCATCCCATAATATAAGAG 57.614 38.462 0.00 0.00 0.00 2.85
2042 2215 9.494055 CTACTCCCTTCATCCCATAATATAAGA 57.506 37.037 0.00 0.00 0.00 2.10
2043 2216 9.494055 TCTACTCCCTTCATCCCATAATATAAG 57.506 37.037 0.00 0.00 0.00 1.73
2046 2219 9.440761 GTATCTACTCCCTTCATCCCATAATAT 57.559 37.037 0.00 0.00 0.00 1.28
2047 2220 7.844779 GGTATCTACTCCCTTCATCCCATAATA 59.155 40.741 0.00 0.00 0.00 0.98
2048 2221 6.674419 GGTATCTACTCCCTTCATCCCATAAT 59.326 42.308 0.00 0.00 0.00 1.28
2049 2222 6.023603 GGTATCTACTCCCTTCATCCCATAA 58.976 44.000 0.00 0.00 0.00 1.90
2050 2223 5.077300 TGGTATCTACTCCCTTCATCCCATA 59.923 44.000 0.00 0.00 0.00 2.74
2051 2224 4.140447 TGGTATCTACTCCCTTCATCCCAT 60.140 45.833 0.00 0.00 0.00 4.00
2052 2225 3.208922 TGGTATCTACTCCCTTCATCCCA 59.791 47.826 0.00 0.00 0.00 4.37
2053 2226 3.858135 TGGTATCTACTCCCTTCATCCC 58.142 50.000 0.00 0.00 0.00 3.85
2054 2227 5.888982 TTTGGTATCTACTCCCTTCATCC 57.111 43.478 0.00 0.00 0.00 3.51
2057 2230 9.627123 CAATTTATTTGGTATCTACTCCCTTCA 57.373 33.333 0.00 0.00 0.00 3.02
2058 2231 9.847224 TCAATTTATTTGGTATCTACTCCCTTC 57.153 33.333 0.00 0.00 35.92 3.46
2060 2233 9.853177 CTTCAATTTATTTGGTATCTACTCCCT 57.147 33.333 0.00 0.00 35.92 4.20
2061 2234 9.067986 CCTTCAATTTATTTGGTATCTACTCCC 57.932 37.037 0.00 0.00 35.92 4.30
2062 2235 9.067986 CCCTTCAATTTATTTGGTATCTACTCC 57.932 37.037 0.00 0.00 35.92 3.85
2063 2236 9.628500 ACCCTTCAATTTATTTGGTATCTACTC 57.372 33.333 0.00 0.00 35.92 2.59
2064 2237 9.408648 CACCCTTCAATTTATTTGGTATCTACT 57.591 33.333 0.00 0.00 35.92 2.57
2065 2238 8.135529 GCACCCTTCAATTTATTTGGTATCTAC 58.864 37.037 0.00 0.00 35.92 2.59
2078 2251 1.342174 CAGCACTGCACCCTTCAATTT 59.658 47.619 3.30 0.00 0.00 1.82
2107 2280 5.368145 TCATAGCTGCGAAAGGAATTATGT 58.632 37.500 0.00 0.00 33.01 2.29
2149 2322 9.199982 CCTATAAAAACAATCATGAATGGATGC 57.800 33.333 15.10 0.00 0.00 3.91
2180 2353 4.065088 TCATCCAGTTTTCAAAGTCTCCG 58.935 43.478 0.00 0.00 0.00 4.63
2340 2571 6.718294 ACAAATATTTAGGAACGGAGGAAGT 58.282 36.000 0.00 0.00 0.00 3.01
2341 2572 7.048512 AGACAAATATTTAGGAACGGAGGAAG 58.951 38.462 0.00 0.00 0.00 3.46
2342 2573 6.954232 AGACAAATATTTAGGAACGGAGGAA 58.046 36.000 0.00 0.00 0.00 3.36
2343 2574 6.555463 AGACAAATATTTAGGAACGGAGGA 57.445 37.500 0.00 0.00 0.00 3.71
2344 2575 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
2361 2592 9.965824 GTCCATTTGAAATCTCTAAAAAGACAA 57.034 29.630 0.00 0.00 0.00 3.18
2362 2593 9.354673 AGTCCATTTGAAATCTCTAAAAAGACA 57.645 29.630 0.00 0.00 0.00 3.41
2366 2597 9.581289 TGGTAGTCCATTTGAAATCTCTAAAAA 57.419 29.630 0.00 0.00 39.03 1.94
2367 2598 9.010029 GTGGTAGTCCATTTGAAATCTCTAAAA 57.990 33.333 0.00 0.00 46.20 1.52
2368 2599 8.160765 TGTGGTAGTCCATTTGAAATCTCTAAA 58.839 33.333 0.00 0.00 46.20 1.85
2369 2600 7.685481 TGTGGTAGTCCATTTGAAATCTCTAA 58.315 34.615 0.00 0.00 46.20 2.10
2370 2601 7.252612 TGTGGTAGTCCATTTGAAATCTCTA 57.747 36.000 0.00 0.00 46.20 2.43
2371 2602 6.126863 TGTGGTAGTCCATTTGAAATCTCT 57.873 37.500 0.00 0.00 46.20 3.10
2372 2603 7.254455 CGTATGTGGTAGTCCATTTGAAATCTC 60.254 40.741 0.00 0.00 46.20 2.75
2373 2604 6.538742 CGTATGTGGTAGTCCATTTGAAATCT 59.461 38.462 0.00 0.00 46.20 2.40
2374 2605 6.238374 CCGTATGTGGTAGTCCATTTGAAATC 60.238 42.308 0.00 0.00 46.20 2.17
2375 2606 5.588648 CCGTATGTGGTAGTCCATTTGAAAT 59.411 40.000 0.00 0.00 46.20 2.17
2376 2607 4.938832 CCGTATGTGGTAGTCCATTTGAAA 59.061 41.667 0.00 0.00 46.20 2.69
2377 2608 4.223255 TCCGTATGTGGTAGTCCATTTGAA 59.777 41.667 0.00 0.00 46.20 2.69
2378 2609 3.770388 TCCGTATGTGGTAGTCCATTTGA 59.230 43.478 0.00 0.00 46.20 2.69
2379 2610 4.131649 TCCGTATGTGGTAGTCCATTTG 57.868 45.455 0.00 0.00 46.20 2.32
2380 2611 4.163458 ACATCCGTATGTGGTAGTCCATTT 59.837 41.667 0.00 0.00 44.79 2.32
2381 2612 3.709653 ACATCCGTATGTGGTAGTCCATT 59.290 43.478 0.00 0.00 44.79 3.16
2382 2613 3.305720 ACATCCGTATGTGGTAGTCCAT 58.694 45.455 0.00 0.00 44.79 3.41
2383 2614 2.742348 ACATCCGTATGTGGTAGTCCA 58.258 47.619 0.00 0.00 44.79 4.02
2384 2615 6.770746 ATATACATCCGTATGTGGTAGTCC 57.229 41.667 3.56 0.00 45.99 3.85
2385 2616 8.610896 GTCTATATACATCCGTATGTGGTAGTC 58.389 40.741 3.56 0.00 45.99 2.59
2386 2617 8.105197 TGTCTATATACATCCGTATGTGGTAGT 58.895 37.037 3.56 0.00 45.99 2.73
2387 2618 8.502105 TGTCTATATACATCCGTATGTGGTAG 57.498 38.462 3.56 3.93 45.99 3.18
2389 2620 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
2390 2621 9.121658 AGTATGTCTATATACATCCGTATGTGG 57.878 37.037 3.56 0.00 45.99 4.17
2408 2639 9.469097 AGTGAATCTACACTCTAAAGTATGTCT 57.531 33.333 0.00 0.00 46.36 3.41
2422 2653 6.148480 ACAGAGCAAAATGAGTGAATCTACAC 59.852 38.462 0.00 0.00 40.60 2.90
2423 2654 6.233434 ACAGAGCAAAATGAGTGAATCTACA 58.767 36.000 0.00 0.00 0.00 2.74
2424 2655 6.734104 ACAGAGCAAAATGAGTGAATCTAC 57.266 37.500 0.00 0.00 0.00 2.59
2425 2656 8.043113 ACATACAGAGCAAAATGAGTGAATCTA 58.957 33.333 0.00 0.00 0.00 1.98
2426 2657 6.883217 ACATACAGAGCAAAATGAGTGAATCT 59.117 34.615 0.00 0.00 0.00 2.40
2427 2658 7.081526 ACATACAGAGCAAAATGAGTGAATC 57.918 36.000 0.00 0.00 0.00 2.52
2428 2659 7.826252 ACTACATACAGAGCAAAATGAGTGAAT 59.174 33.333 0.00 0.00 0.00 2.57
2429 2660 7.161404 ACTACATACAGAGCAAAATGAGTGAA 58.839 34.615 0.00 0.00 0.00 3.18
2430 2661 6.701340 ACTACATACAGAGCAAAATGAGTGA 58.299 36.000 0.00 0.00 0.00 3.41
2431 2662 6.591448 TGACTACATACAGAGCAAAATGAGTG 59.409 38.462 0.00 0.00 0.00 3.51
2432 2663 6.591834 GTGACTACATACAGAGCAAAATGAGT 59.408 38.462 0.00 0.00 0.00 3.41
2433 2664 6.815641 AGTGACTACATACAGAGCAAAATGAG 59.184 38.462 0.00 0.00 0.00 2.90
2434 2665 6.701340 AGTGACTACATACAGAGCAAAATGA 58.299 36.000 0.00 0.00 0.00 2.57
2435 2666 6.974932 AGTGACTACATACAGAGCAAAATG 57.025 37.500 0.00 0.00 0.00 2.32
2436 2667 6.936900 ACAAGTGACTACATACAGAGCAAAAT 59.063 34.615 0.00 0.00 0.00 1.82
2437 2668 6.288294 ACAAGTGACTACATACAGAGCAAAA 58.712 36.000 0.00 0.00 0.00 2.44
2438 2669 5.853936 ACAAGTGACTACATACAGAGCAAA 58.146 37.500 0.00 0.00 0.00 3.68
2439 2670 5.468540 ACAAGTGACTACATACAGAGCAA 57.531 39.130 0.00 0.00 0.00 3.91
2440 2671 5.010617 TCAACAAGTGACTACATACAGAGCA 59.989 40.000 0.00 0.00 0.00 4.26
2441 2672 5.470368 TCAACAAGTGACTACATACAGAGC 58.530 41.667 0.00 0.00 0.00 4.09
2442 2673 7.946655 TTTCAACAAGTGACTACATACAGAG 57.053 36.000 0.00 0.00 35.39 3.35
2443 2674 8.367911 AGATTTCAACAAGTGACTACATACAGA 58.632 33.333 0.00 0.00 35.39 3.41
2444 2675 8.539770 AGATTTCAACAAGTGACTACATACAG 57.460 34.615 0.00 0.00 35.39 2.74
2445 2676 8.367911 AGAGATTTCAACAAGTGACTACATACA 58.632 33.333 0.00 0.00 35.39 2.29
2446 2677 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
2448 2679 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
2449 2680 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
2450 2681 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
2451 2682 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
2452 2683 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
2453 2684 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
2454 2685 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
2455 2686 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
2456 2687 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
2469 2700 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
2470 2701 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
2471 2702 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
2472 2703 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
2473 2704 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
2474 2705 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
2475 2706 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
2476 2707 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
2477 2708 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
2478 2709 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
2479 2710 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
2480 2711 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
2481 2712 8.731591 TTATACTCCCTCCGTTCCTAAATATT 57.268 34.615 0.00 0.00 0.00 1.28
2482 2713 8.912614 ATTATACTCCCTCCGTTCCTAAATAT 57.087 34.615 0.00 0.00 0.00 1.28
2484 2715 8.912614 ATATTATACTCCCTCCGTTCCTAAAT 57.087 34.615 0.00 0.00 0.00 1.40
2485 2716 8.731591 AATATTATACTCCCTCCGTTCCTAAA 57.268 34.615 0.00 0.00 0.00 1.85
2486 2717 8.731591 AAATATTATACTCCCTCCGTTCCTAA 57.268 34.615 0.00 0.00 0.00 2.69
2487 2718 8.175431 AGAAATATTATACTCCCTCCGTTCCTA 58.825 37.037 0.00 0.00 0.00 2.94
2488 2719 7.017531 AGAAATATTATACTCCCTCCGTTCCT 58.982 38.462 0.00 0.00 0.00 3.36
2489 2720 7.039223 TGAGAAATATTATACTCCCTCCGTTCC 60.039 40.741 11.83 0.00 0.00 3.62
2490 2721 7.893658 TGAGAAATATTATACTCCCTCCGTTC 58.106 38.462 11.83 0.00 0.00 3.95
2491 2722 7.509659 ACTGAGAAATATTATACTCCCTCCGTT 59.490 37.037 11.83 0.00 0.00 4.44
2492 2723 7.011382 ACTGAGAAATATTATACTCCCTCCGT 58.989 38.462 11.83 0.00 0.00 4.69
2493 2724 7.176865 TGACTGAGAAATATTATACTCCCTCCG 59.823 40.741 11.83 0.00 0.00 4.63
2494 2725 8.308207 GTGACTGAGAAATATTATACTCCCTCC 58.692 40.741 11.83 3.84 0.00 4.30
2495 2726 9.084533 AGTGACTGAGAAATATTATACTCCCTC 57.915 37.037 11.83 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.