>input_sequence_76989
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---------------------------------------------ATGGAAGGAGCCAAGGCAGCGGCGGGGCCGGCGGC
AGGTGGGCAGCTGGAATCGGCGCTCCTCCACATCATGCAGCAACACCACCACCAATCCCTCCGCCAGCGCCAACAAACCG
GTAACAATCAACCAACGATCTACTCAAAATTCCTAATCCGCCAAGCAAATCCAATCTTCTCTTGCTAAATTACCTCGCAC
GCAACGCGCCACAGAGAGGGCGAAGAAGGACGCCCTGCGGAGCGCGGCGCGGCTCGCCGGTCATCTCGTGGAGGCCGTCG
ACGGCGGGGTGCAGGAGCTCTTCGTCAACGAGAAGCGCATCGAGCTCGAGGCCCGCGCGCTGCTCGGGACCATCGCGCGG
TACAGGAAGCAGAGCGACCAGTGGCTCGCCGCCACCAACGCGGTCAACTCGATCCTCAAGGTGTGTGTGCTCTGCTGCTG
TCCTCCATTTCTCTT--GTGTTCTTGTTTAATAC---GCAGGTTTTTACATTATTATTACGTATTATTGTTGTTACAAAA
TGGATGTGCCTAATTCACA-TGTTTTAG----------------------------------------------------
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>chr5B_1_TraesCS5B01G147400
GCATTCACATAATAATTTTTTCAAAATCACTAATTGAGGAGTACTCCTTCCAAAGATCACTTCTTCCTCCTCAGGTTGTG
ACAAGTGGCACGCTACATGTGGGCCACTTGTCGCAACCTAGGAGTTTTCCTTTTTTTCGTAGATCCATTTATTCAAAATG
TTTTATCTCTTAAACCGTGCGTCGAAATCTCGAATTGTTTTCACCCTTGGATTCCTCATGTCAAGAT-TTCAAAACTAGA
TCCCATGTTGATAGGTTTTAATGATTTTTTTAT----------------G-AAAAAACCGAACAGGGAGCACGGTTTTCC
CCTTTTCAGAAGCCGTTTCTGAGAGGGACGACCGTACCTCTCGCGGAAGCAAAACCGTGCCTCTCAAGGAAGAAAAAAAA
TA------------------------------------------------------------------------------
---------------AAG--ACACATTTTTTCCGTTTCCGAG-AG-----GCCGTGCCTCTCGCGGAAG-CAAATTCGCG
C--CTCTCGCGGAAGCAAAACCATGCCTCTCACGGAAGAAAAAAAAAAGGAAAAAACGCTTTATTTTTCCGTTTTCGCGA
GGCACGACCGTGTCTCTCGCGGAACCAAAACCGTGCCACTCATTGAAGAAAAAAACAGAGAATTTT--TTTTTTCCATTT
CCGAGAGGCATGGCCGTGTCTCTCACGAAAAAAAAGCCATGCCTCTCACGGAAAAAAACGTGTTTTTTCTTGAAATTTTT
TATTTTTTTGTCGAGAAGCTGAGAAAGACCGGTGAAAAACCAAAAAGTCAATAATAATAATAAAATATATTTAAAGAGCC
AAAACGCAGGCGAAAAAAAAGCGCAATACATGGTGGCGGCTGAGAGCCCGCCAGGTCATGTCATTTGTGTAATGTCTGTA
ATTTGTACCCACTAAGTTACATGGGCCGTAGCCCGTAGCAAAGAACAAACTGG---------------------------
------------AAAGAGTATAGGCGGATGACGGGACGAGGAAGACGAGAGCTCAGACCGTTGTCC--AAAAAGAAAAAG
AAAAAGAGAGAGAGAGAGAGAGAGAGAGAGCTCAGATCGGAGAAGATGGAAGGAGCCAAGGCAGCGGCGGGGCCGGCGGC
AGGTGGGCAGCTGGAATCGGCGCTCCTCCACATCATGCAGCAACACCACCACCAATCCCTCCGCCAGCGCCAACAAACCG
GTAACAATCAACCAACGATCTACTCAAAATTCCTAATCCGCCAAGCAAATCCAATCTTCTCTTGCTAAATTACCTCGCAC
GCAACGCGCCACAGAGAGGGCGAAGAAGGACGCCCTGCGGAGCGCGGCGCGGCTCGCCGGTCATCTCGTGGAGGCCGTCG
ACGGCGGGGTGCAGGAGCTCTTCGTCAACGAGAAGCGCATCGAGCTCGAGGCCCGCGCGCTGCTCGGGACCATCGCGCGG
TACAGGAAGCAGAGCGACCAGTGGCTCGCCGCCACCAACGCGGTCAACTCGATCCTCAAGGTGTGTGTGCTCTGCTGCTG
TCCTCCATTTCTCTT--GTGTTCTTGTTTAATAC---GCAGGTTTTTACATTATTATTACGTATTATTGTTGTTACAAAA
TGGATGTGCCTAATTCACA-TGTTTTAGCAGCAATCTTATGCACAATTGTCTTGTTTCACATTACCCATGATATCCTTTG
TAACATTATTATTATTCGCAAAATGGATTTGCCATGGTATGTTTTATAATCCTATATGTATGAATCTTTTCTGTTTTGAG
CCGATGATTCTTTTGTTTGACATTATCCATGATATCCGTTGCGACAGTTCTTCAGCGGATTCTAATAGACATAAATTTAA
TCTAGCTGACACTCCCCCC-ATCCAAATTAAACAAAATTAATTTGGATCAAAGGGAGTATCTTGTAATGTTTTCCTTACA
CAACCTTTGCCCGCAGTAAATCCAAATCCTACCCTATAAACTGATTAGTGCACGAATCTAGAAGGGCGAAATGCCATAAA
TAGTTTTATTTTATCTGGTTGGCTCTTTTGCCCCAAAATTATCATCAGTGAATAACACTAAGCTCGAGATGATAACTACT
TACTCCGTCCATAATATAAGAGCATTTTTGACACTACACTAGTGTAAAAAACACTCTTATATTATGGGATGAAGGGAGTA
GATACCAAATAAATTGAAGGGTGCAGTGCTGAACAAACCACATAATTCCTTTCGCAGCTATGAGCACTCGGTATTTCTAA
AGCATCCATTCATGATTGTTTTTATAGGAAATCGGAGACTTTGAAAACTGGATGAAGATCATGGATTTTGACTGTAAAAG
TATAAATGCAGCCATTCGTAACATTCATCGGTCATGATTTTGTCCAGCGCCTGCAACTATGATGCTATGGAG--------
--------------------------------------------------ATCATAGGTTGTGACTGTAAAGGTATCAAT
GTAGCCATCTACTTCCTCCGTTCCTAAATATTTGTCTTTTTAGAGATTTCAAATGGACTACCACATACGGATGTATATAG
ACATACTTTAGAGTGTAGATTCACTCATTTTGCTCTGTATGTAGTCACTTGTTGAAATCTCTAGAAAGACAAATATTTAG
GAACGGAGGGAGTATAATATTTCTCAGTCACTATGATGCTACAAAGT
>chr7D_21
--------------------TCAAAATCACTAATTGAGGAGTACTCCTTGCAAAGATCACTCCTATCTCCTCAGGGTGTG
ACAAGTGGCGTGCTACATGTGCGCGAGTTGTCGCAACCTAGGAGTTTTCCGTTTTTTCGTAGATCCATTTACTTAAAATG
TTTTATCTCTTAAACCGTGCATCCAAATCTCAAACTATTTTCACCATTGGATTCCTCGTGTCGAGATCTTCAAAACTAGA
TCCCATGTTGATAGGTTTTGACGAACTTTTTTTTCACAAAAAAAACCAGACAAAAATCCGAACCTGGAGCACGGTTTTTT
CCCTTTCCGAAAGGGGCGTGCCTCC----------------CGCGAAAGCACAACCGTGCTTCTCATGGAAGAAAAAAAA
CAGAAAAAGTGTTTTTTTTTTCGTTTCCAAGAGGCACGGCCATGCCTCTCGCGC-AAGCAAAACCGTGCCTCTCGCGGAA
GCAAAA---------------------------------------------CCGTGCCTCTCACAAAAG-C---------
----------------------------------------AAAATAAAT-AGAAAACATGTTTTTTTTTCATTTCTGAGA
GGCACGGCCATGCCTATCGCGGATGCAAAACCGTGCCTCTCGCGGAAGAAAAAAAACCAGGAAATGCGTTTCTTCCGTTT
CC--GAGGCACGGCCGTGCTTCTCGCGAAAGCAAAAGCATGCCTCTCGCGGAAGAAAAA---------------------
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>chr5B_22
---------------------CAAAATCACTAATTGAGGAGTACTCCTTACAAAGATCACTGCCACCTTCCCAGATTGTG
ACAAGTGGCGTGCTGCATGTGCGACACTTGTCGCAACCTAGGAGTTTTCCCTTTTTTTGTAGATTCGTTTATTCAAAATG
TTTTATCTCTTAAACCGCGCGTCCAAATCTCGAACCATTTTCACCGTTGGATTCCTCGCGTCGAGATTTTCAAATCTAGA
T-CCATGTTGATAGGTTTTGATGAACTTTTTT--CATGTAAAAA------------ACCAAATAGGAAGCACGG--TTTT
TTCCTCTCCGA---------------------------------------------------------------------
----------------------------AAGAGGCAGGGCCGTGCCTCTGGCGAAAAGCACAACCGTGCCTCTTGCCGAA
GAAAAAAATAAATAGAAAGCACA-TTTTTTTTCGTTTTCGAG-AG-CACGGCCGTGCCTCTCGTGAAAATCACAACCATG
TCTCTTTCACGGAAGCAAAACCATACCTCTCGTTGAAGGGG---------------------------------------
---------------------------------------------------AAAAAATAGAAAATGCGTTTTTTCCACTT
CTG-GATGCACGGCCGTGCCTCTCACGGAAGAAAAA--------------------------------------------
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>chr5D_24
-----------------------AAATCACTAGTTGAGGAGTACTTGTTACAAAGATCACTCCCACC-TCCCAGGTTGCG
ACAAGTGGCGCGCTGGATGTGCGCCACTTGTCGCAACCTGGGATTTTTTCCTTTTTTCTAAGATCCGTTTATTCAAAACG
TTTTATCTCTTAAACCGTGCATTCAAATCTTGAACCATTTTCATCGTTGGATTCCTTGCTTCGAGATCTTCAAAACTAGA
TTCCATGTTGATTGGTTTTGACGAATTTTTTT--CACGAAAAAACGGACA-AAAAAACCGACCTGGGAGCATGGGTTTTT
TCCCTTTTCGA---------------------------------------------------------------------
----------------------------AAGAGGCATGCCTGTGCCTCTCGCGG-AAGCAAAACCGTGCCTCTCGCGGAA
GGAAAAAAAT---AGAAA--ACGCTTTTTTTTCGTTCCCGAT-AGGCATGGTCGTGACTCTCGTGAAAG-CACAGTCGTG
C--CTCTCAAGGAAGCAAAACCGTGCCTCTCGCGGAAGAAAAAATAAAT-AGAAAACGTGTTTTTTT-CCTTTTCG--GA
GGCACGGCCGTGACTCTCGCGAAAGCACAACCATGCCTCTCGCGGAAGCAAAAAACCCGGAAAACACATTTTTTTCGTTT
CCGAGAGGCACGGCCGTGACTCTCGCGAAAGCACAACCGTGCCTCTCGCGGAAGCAAAACCGTG----------------
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>chr5D_24
-----------------------AAATCACTAGTTAAGGAGTACTCTTTGCAAAGATCACTCCCACCTTCCCAAGTTGCG
ACAAGTGGCACGCTGCATGGGCGCCACTCGTCGCAACCTAGGAGTTTTTCCTTTTTCCGTAGATTCGTTTATTCAAAATG
TTTTATCTCTTAAACCGTGCGTCCAAATCTCGAACCGTTTTCATCGTTGGATTCCTCGCGTCGAGATCTTCAAAACTAGA
T-CCATGTTGATAGGTTTTGACGAACTTTTTTGC-------------ACG-AAAAAACCGAAATGGGAGCACGGGTTTTT
TCCTTTCCGAAAGAGGCACG------------------------------------------------------------
-----------------------------------------------CTCGCGA-AATCACAACCGTGCCTCTCGCGGAA
GGAAAAAAAGAAGAGAAA--ACT-TGTTTTTTCATTTCCGAGGAGGCACGGTCGTGCCTCTTGCGAAAG-CACAACCATG
C--CTATCGCGGAAGAAAAACCATGCTTCTCGC--------AAAAAAAC-AGAAAACACGTTTTTTT-CCGTTTCCGAGA
GGCACGGCCATGCCTCTCGCGAAAGCACAACCGTGCCTCTCGCGGAAGGAAAAAAAACTGAAAACGTGTTTTT----TTT
CCAAGAGGCACGGCCATGACTCTCGCGGAAGAAA----------------------------------------------
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>chr5D_800
GAGACCGACG----------------------------------------------------------------------
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-----------------------------------------------------GGCCAAGTCACTTGTGTAATGTCTGTA
ATTTGTACCCACTAAGTTACATGGGCCGTAGCCCGTAGCAAAGAACAAACTGGCAAAGTGTATCGCTCCTAAAAAATCAA
AAAAAAAATGGCAAAGTGTATAGGCGGATGACGGGACGAGGAAGACGAGAGCTCAGACCGTTGTCTCGAAAAAAAAAAGG
AAAAAAAAAA-------------------GCTCAGATCGGAGAAGATGGAAGGAGCCAAGGCAGCGGCGGGGCCGGCGGC
GGGTGGGCAGCTGGAATCGGCGCTTCTCCACATCATGCAGCAACACCACCACCAATCCCTCCGCCAGCGCCAACAAACCG
GTAACGATCAGCCAACGATCTACTCAAAATTCCTAATCCGCCAAGCAAATCCAATCCTCTCTTGCTAAATTGCATCACAC
GCAACGCGCCGCAGAGAGGGCGAAGAAGGACGCCCTGCGGAGCGCGGCGCGGGTCGCCGGTCATCTCGTGGAGGCCGTCG
ACGGCGGGGTGCAGGAGCTCTTCGTCAACGAGAAGCGCATCGAGCTCGAGGCCCGCGCGCTGCTCGGGACCATCGCGCGG
TACAGGAAGCAGAGCGACCAGTGGCTCGCCGCCTCCAACGCGGTCAACTCGGTCCTCAAGGTGTGTGTGCGCTGCTGCTG
CCCTCCATTTCTCTT--GTGTTCTTGTTTAATAGTATGCAGGTTTTGACATTATTATTACGTATTATTATTGTTACAAAA
TGGATTTGCCTAATTCACA-TGTTTTAGTAGTAGTCTTATGCACAATTGTTTTGTTTCTCATTACCCATGATATCCGTTG
TAACATTATTATTATTCGCAAAATGGATTTGCCGTGGTATGTTT-ATAATCCCAT--GTATGATTCTTTTCTGTTTTGAG
CCGATGATTCTTTTGTTTGA------CCATGATATTCGTTGCGACAGTTCTTCAGCGGATCCTAATAGACATAAATTTAA
TGTAGCTGATACTCCCTCCGATCCAAATTAAACAAAATTAATTTGGATCAGAGGGAGTATCTCGTAATGTTTTACTTACA
TAACCTTTGCCTGCAGTAAATCCAAACCCTACCCT-TAAACTGATTAGTGCACGAATCTAGAAAGGTGAAATGCCATAAA
TAGGTTCTTTTTATCTGGTTGGCACTTTTGCCCCAAAATTATCATCAGTGGATAACATTAGGCTCGAGATGATAAC----
------------------------------------------------------------------------------TA
GATACCAAATGAATTGAAGGGTGCAGTGCTGAACAAACC-CATAATTCCTTTCGCAGCTATGAGCACTCGGTATTTCTAA
AACATCCATTAATGATTATTTTTATAGGAAATTGGAGACTTTGAAAACTGGATGAAGATCATGGATTTTGACTGTAAAAG
TATAAATGCAGCCATTCGTAACATTCATCGGTCATGATTTTGTCCAGCGCCTGCAACTATGATGCTATGGAGCGTTTCTT
CCTTTTTTTTAATATATATAGGGAATTTCGTGACCGAAAACTGGATGAAGATCATAGGTTGTGACTGTAAAGGTATCAAT
GTAGCCATCT----------------------------------------------------------------------
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>chr5A_851
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--------------AGTTACATGGGCCGTAGCCCGTAGCAAAGAACAAACTGGCCGAGAGCCCG----------------
--------------AGAGTACAGGCGGATGACAGGACGAGGAAGACGAGAGCTCAGACCGTTGTCTCAAAAAAGAAAAGG
AAAAAAAAGAGT-----------------GCTCAGATCGGAGAAGATGGAAGGAGCCAAAGCAGCGGCG-----------
-GGTGGGCAGCTGGAATCGGCGCTCCTCCACATCATGCAGCAACACCACCACCAATCCCTCCGCCAGCGCCAACAAACCG
GTAACGATCAACCAACGATCTACTCAAAATTCCTAATCCGCCAAGCAAATCCAATCTTCTCTTGCTAAATTATCTCACAC
CCAACGCGCCGCAGAGAGGGCGAAGAAGGACGCCCTGCGGAGCGCGGCGCGTGTCGCCGGTCATCTCGTGGAGGCCGTCG
ACGGCGGGGTGCAGGAGCTCTTCGTCAACGAGAAGCGCATCGAGCTCGAGGCCCGCGCGCTGCTCGGGACCATCGCGCGG
TACAGGAAGCAGAGCGACCAGTGGCTCGCCGCCACCAACGCGGTCAACTCGGTCCTCAAGGTGTGTGCGCTCTGCTGCTG
CCCTCCATCTCTCTCTCGTGTTCTTGTTTAATAC---GCAGGTTTTGACATTATTATTACGTATTATTATTGTTACGAAA
TAGATTTGCCTAATTCACAATGTTTTAATAGTATTCTTATGCACAATTGTTTTGTTTCTCATTACCCATGATATCCGTTG
TAACATTATTATTATTCGCAAAATGGATTTGCCATGGTATGTTTTATAATCCTAT--GTATGATTCTTTTCTGTTTTGAG
CCGATGATTCTTTTGTTTGACATTACCCATGATATTCGTTGCGTCAGTTCTTCAGCAGATTCTAATAGACATAAATTTAA
TGTAGCTGATACTCCCTCCGATCCAAATTAAACAAAATTAATTTGGATCAGAGGGAGTATCTCGTAATGTTTTCCTTACA
TAACCTTTGCCTGCACTAAATCCAAATCCTACCCT-TAAACTGATTAGTGCACGAATCTAGAAAGGTGAAATGCCATAAA
TAGGTTCTTTTTATCTGGTTGGCTCTTTTGCCCCAAAATTTTCATCAGTGGATAACACTAGGCTCGAGATGATAAC----
------------------------------------------------------------------------------TA
GATACCAAATGAATCGAAGGGTGCAGTGCTGAACAAACC-CATAATTCCTTTCGCAGCTATGAGCACTCGGTATTTCTAA
AACGTCCATTCATGATTGTTTTTATAGGAAATTGGAGACTTTGAAAACTGGATGAAGATCATGGATTTTGACTGTAAAAG
TATAAATGCAGCCATTCGTAACATTCATCGGTCATGATTTTGTCCAGCGCCTGCAACTATGATGCTATTGAGCGTTTCTT
CCTTTTTTTTAATATATATAGGAAATTTCGTGACCGAAAACTGGATGAAGATCATAGGTTGTGACTGTAAAGGTATCAAT
GTACCATCTG----------------------------------------------------------------------
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--------------TAATATTTCTCAGTCACTATGATGCTACAAAGT
>SNPs
-SSSS-SSSSSSSSSSSSSS-----------------------------S-----------S--S---------------
---------------------S----------------------------S-----------------------------
-----------------------S----------S----------S-----------S----S-----------------
-------------------S----S------S----------------------------------------------SS
--S----S---SSS-SSS-SSSSSSSSSSSSSSSSSSSSSS----S-----S--------S-----S-------------
S-------------------------------------------------------------------------------
-----------------S------S------S---------------------------------S------S-S---S-
-------------------------------S----------------SS-S-------S--S-----------S--S--
------S-----S-----------S------------S---SSS-------------S----SS-S--------------
----------S-------S-----------S----S-----------S-----S----SSS--SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S--S----S----------------
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-----------------------------------------------------------------S------------S-
-----S-S-SSSSSSSSSSSSSSSSSSSS---------------------------------------------------
S-------------------------------------------------------------------------------
-----S----------------------------------------------------------------------S---
----------S-----------------------------------------S---------------------------
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---------------------------------------------------S----------------------------
S---------------------------------------------S---------------------S-----------
-----S----------------------S--S-S----------------S-------S-----------------S---
-------------------------------------------------------SS------S----------------
-------------------------S---------S--------------------------------------------
-S-------S------S---------------------------------S-----------S-----------------
S----------S-----------------------S---------------------------S--S-------------
---S--SS------------------------------------------S---------S---------------SSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
----------S----------------------------S----------------------------------------
-S------------------------------S-----------------------------------------------
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----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS---------------------------------
>forward_1106
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----------------------------------------------GAGAGCTCAGACCGTTGTCC--------------
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>reverse_2001
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CAACCTTTGCCCGCAGTAAA------------------------------------------------------------
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