Multiple sequence alignment - TraesCS5B01G143800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G143800 chr5B 100.000 4142 0 0 1 4142 271147282 271143141 0.000000e+00 7649
1 TraesCS5B01G143800 chr5B 95.620 137 3 3 850 985 672582540 672582674 2.510000e-52 217
2 TraesCS5B01G143800 chr5B 97.368 76 0 1 1399 1474 315165278 315165351 1.210000e-25 128
3 TraesCS5B01G143800 chr5D 91.103 1405 77 20 1920 3317 233736693 233738056 0.000000e+00 1858
4 TraesCS5B01G143800 chr5D 87.442 860 69 23 3318 4142 233738163 233739018 0.000000e+00 953
5 TraesCS5B01G143800 chr5D 84.903 616 69 7 1 604 233724796 233725399 5.920000e-168 601
6 TraesCS5B01G143800 chr5D 93.878 392 10 4 1014 1399 233735836 233736219 2.780000e-161 579
7 TraesCS5B01G143800 chr5D 88.942 208 14 5 1708 1907 233736427 233736633 8.890000e-62 248
8 TraesCS5B01G143800 chr5D 96.250 80 0 1 1398 1474 277244591 277244670 1.210000e-25 128
9 TraesCS5B01G143800 chr5A 91.058 1219 70 18 2112 3321 321024276 321023088 0.000000e+00 1611
10 TraesCS5B01G143800 chr5A 88.288 666 50 17 1475 2121 321025892 321025236 0.000000e+00 773
11 TraesCS5B01G143800 chr5A 83.107 811 87 26 73 853 321027146 321026356 0.000000e+00 693
12 TraesCS5B01G143800 chr5A 92.174 460 26 5 3689 4142 321022583 321022128 3.490000e-180 641
13 TraesCS5B01G143800 chr5A 95.775 355 8 6 964 1311 321026317 321025963 2.160000e-157 566
14 TraesCS5B01G143800 chr5A 88.916 415 30 6 3321 3721 321023031 321022619 8.000000e-137 497
15 TraesCS5B01G143800 chr5A 97.403 77 1 1 1399 1474 673554710 673554634 3.360000e-26 130
16 TraesCS5B01G143800 chr2B 98.507 134 1 1 848 980 669502651 669502784 6.920000e-58 235
17 TraesCS5B01G143800 chr7A 99.206 126 0 1 850 975 650614012 650614136 4.170000e-55 226
18 TraesCS5B01G143800 chr6B 98.400 125 0 2 850 974 652230403 652230281 6.970000e-53 219
19 TraesCS5B01G143800 chr3A 98.400 125 1 1 850 974 736809233 736809356 6.970000e-53 219
20 TraesCS5B01G143800 chr3A 98.734 79 1 0 1399 1477 430526505 430526427 1.550000e-29 141
21 TraesCS5B01G143800 chr3A 94.186 86 4 1 1398 1482 40931863 40931778 3.360000e-26 130
22 TraesCS5B01G143800 chr2D 97.619 126 2 1 850 975 527524305 527524429 9.020000e-52 215
23 TraesCS5B01G143800 chr3D 96.850 127 2 2 850 976 124504305 124504181 1.170000e-50 211
24 TraesCS5B01G143800 chrUn 96.825 126 2 2 850 975 108306310 108306433 4.200000e-50 209
25 TraesCS5B01G143800 chr4D 96.800 125 2 2 850 974 417878470 417878592 1.510000e-49 207
26 TraesCS5B01G143800 chr4D 92.857 98 7 0 1153 1250 103233168 103233265 4.320000e-30 143
27 TraesCS5B01G143800 chr4D 96.341 82 0 1 1396 1474 484149292 484149211 9.340000e-27 132
28 TraesCS5B01G143800 chr4B 94.898 98 5 0 1153 1250 147365947 147366044 1.990000e-33 154
29 TraesCS5B01G143800 chr4B 96.154 78 3 0 1395 1472 640669738 640669815 1.210000e-25 128
30 TraesCS5B01G143800 chr1D 97.436 78 1 1 1398 1475 408924493 408924569 9.340000e-27 132
31 TraesCS5B01G143800 chr6A 96.154 78 3 0 1398 1475 594463518 594463441 1.210000e-25 128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G143800 chr5B 271143141 271147282 4141 True 7649.000000 7649 100.000000 1 4142 1 chr5B.!!$R1 4141
1 TraesCS5B01G143800 chr5D 233735836 233739018 3182 False 909.500000 1858 90.341250 1014 4142 4 chr5D.!!$F3 3128
2 TraesCS5B01G143800 chr5D 233724796 233725399 603 False 601.000000 601 84.903000 1 604 1 chr5D.!!$F1 603
3 TraesCS5B01G143800 chr5A 321022128 321027146 5018 True 796.833333 1611 89.886333 73 4142 6 chr5A.!!$R2 4069

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
555 577 0.107831 CCCCTTGACGAAGACCAACA 59.892 55.0 0.00 0.0 0.00 3.33 F
1400 1444 0.100503 GCCAATGCGGTTGATGGTAC 59.899 55.0 3.45 0.0 40.37 3.34 F
1406 1450 0.179081 GCGGTTGATGGTACTCCCTC 60.179 60.0 0.00 0.0 0.00 4.30 F
1571 1655 0.322975 AATCGCAAGTCTGGCTCACT 59.677 50.0 0.00 0.0 39.48 3.41 F
2868 4003 0.595095 CTCAAGCTGGCCAAACAGTC 59.405 55.0 7.01 0.0 40.59 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2146 3263 0.321564 TCGGTGCAGAAAGTGATGGG 60.322 55.000 0.00 0.0 0.00 4.00 R
2285 3414 0.696501 AGGACAGCAAACGGGGTAAT 59.303 50.000 0.00 0.0 0.00 1.89 R
2293 3422 1.065551 GTGAACCACAGGACAGCAAAC 59.934 52.381 0.00 0.0 34.08 2.93 R
2948 4083 1.424302 TGGATGGAAAAACGGGTGGTA 59.576 47.619 0.00 0.0 0.00 3.25 R
3671 4937 0.522180 AGACGCCTAGTTCAGTGTCG 59.478 55.000 5.21 0.0 34.53 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.446442 TGTAGAAGGTAGGTCGAGGTT 57.554 47.619 0.00 0.00 0.00 3.50
36 37 0.982852 TCGAGGTTGCCATGGATCCT 60.983 55.000 18.40 18.40 0.00 3.24
39 40 0.259938 AGGTTGCCATGGATCCTTCC 59.740 55.000 18.40 8.22 42.94 3.46
114 115 1.202879 GGGTCGGGCCATGATGAATAA 60.203 52.381 4.39 0.00 39.65 1.40
131 132 8.096414 TGATGAATAATGTACCATGTCGATGAT 58.904 33.333 0.00 0.00 0.00 2.45
152 155 2.030363 TGCGGTCCTTGCAAAATTAGTG 60.030 45.455 0.00 0.00 39.87 2.74
153 156 2.030274 GCGGTCCTTGCAAAATTAGTGT 60.030 45.455 0.00 0.00 0.00 3.55
159 162 6.294731 GGTCCTTGCAAAATTAGTGTCTTCAT 60.295 38.462 0.00 0.00 0.00 2.57
190 199 6.127535 CCGTTAGGATAGTACTTCACTTGGAA 60.128 42.308 0.00 0.00 41.02 3.53
214 223 0.179084 ATGGCATACAACGAGTCCGG 60.179 55.000 0.00 0.00 40.78 5.14
221 230 1.597027 CAACGAGTCCGGCCAAGTT 60.597 57.895 2.24 0.00 40.78 2.66
228 237 2.124695 CCGGCCAAGTTAGGAGCC 60.125 66.667 2.24 0.00 42.18 4.70
243 252 3.994853 GCCGCCAAGCTTGCCTTT 61.995 61.111 21.43 0.00 0.00 3.11
254 263 1.827789 TTGCCTTTGCGAGCAAGGT 60.828 52.632 16.68 0.00 43.74 3.50
263 272 0.598065 GCGAGCAAGGTTTGGTGAAT 59.402 50.000 0.00 0.00 42.23 2.57
267 276 2.229784 GAGCAAGGTTTGGTGAATCAGG 59.770 50.000 0.00 0.00 42.23 3.86
269 278 2.627699 GCAAGGTTTGGTGAATCAGGAA 59.372 45.455 0.00 0.00 0.00 3.36
274 283 3.057245 GGTTTGGTGAATCAGGAAGAAGC 60.057 47.826 0.00 0.00 0.00 3.86
280 289 2.639347 TGAATCAGGAAGAAGCCACAGA 59.361 45.455 0.00 0.00 0.00 3.41
303 313 1.630878 CCTAGTCCTCCCTTGCAGTTT 59.369 52.381 0.00 0.00 0.00 2.66
308 318 0.829182 CCTCCCTTGCAGTTTGGCTT 60.829 55.000 0.00 0.00 34.04 4.35
310 320 1.541588 CTCCCTTGCAGTTTGGCTTAC 59.458 52.381 0.00 0.00 34.04 2.34
315 325 4.947388 CCCTTGCAGTTTGGCTTACTTATA 59.053 41.667 0.00 0.00 34.04 0.98
366 387 5.425539 TCTTTGAACCCCACCAAAAATTACA 59.574 36.000 0.00 0.00 32.63 2.41
375 396 5.234752 CCACCAAAAATTACAAACTAGCCC 58.765 41.667 0.00 0.00 0.00 5.19
382 403 3.695830 TTACAAACTAGCCCTGACAGG 57.304 47.619 15.15 15.15 34.30 4.00
389 410 1.192146 TAGCCCTGACAGGTCACACC 61.192 60.000 20.24 1.73 38.99 4.16
394 415 0.758734 CTGACAGGTCACACCCAGAA 59.241 55.000 0.00 0.00 39.75 3.02
424 445 7.014230 GGCAACTTGAATACACCCATAATGTAT 59.986 37.037 0.00 0.00 43.55 2.29
434 455 6.905736 ACACCCATAATGTATGTTGGTATCA 58.094 36.000 0.00 0.00 31.97 2.15
438 460 7.147391 ACCCATAATGTATGTTGGTATCACTGA 60.147 37.037 0.00 0.00 31.60 3.41
450 472 4.219944 TGGTATCACTGAGCGACTAACTTT 59.780 41.667 0.00 0.00 0.00 2.66
528 550 9.515226 AGTTGTATTTGTAATTCATACACTGGT 57.485 29.630 0.00 0.00 44.11 4.00
533 555 3.930229 TGTAATTCATACACTGGTGCGTC 59.070 43.478 0.17 0.00 39.60 5.19
549 571 1.671742 GTCTGCCCCTTGACGAAGA 59.328 57.895 0.00 0.00 0.00 2.87
555 577 0.107831 CCCCTTGACGAAGACCAACA 59.892 55.000 0.00 0.00 0.00 3.33
557 579 2.294074 CCCTTGACGAAGACCAACAAA 58.706 47.619 0.00 0.00 0.00 2.83
558 580 2.290641 CCCTTGACGAAGACCAACAAAG 59.709 50.000 0.00 0.00 0.00 2.77
565 587 6.721321 TGACGAAGACCAACAAAGTTATTTC 58.279 36.000 0.00 0.00 0.00 2.17
594 616 6.753913 AATCTGAGGAGCAACATTATCCTA 57.246 37.500 0.00 0.00 43.57 2.94
604 626 4.275936 GCAACATTATCCTATCTTTGCCGT 59.724 41.667 0.00 0.00 33.36 5.68
624 646 4.084900 CCGTTGGTTTGTCTAGTTTACGAC 60.085 45.833 0.00 0.00 0.00 4.34
696 725 8.842358 ATCGAAACTTTTGAAATCTACCTACA 57.158 30.769 0.00 0.00 0.00 2.74
697 726 8.080083 TCGAAACTTTTGAAATCTACCTACAC 57.920 34.615 0.00 0.00 0.00 2.90
698 727 7.929785 TCGAAACTTTTGAAATCTACCTACACT 59.070 33.333 0.00 0.00 0.00 3.55
699 728 9.199982 CGAAACTTTTGAAATCTACCTACACTA 57.800 33.333 0.00 0.00 0.00 2.74
702 731 9.490379 AACTTTTGAAATCTACCTACACTAGTG 57.510 33.333 21.44 21.44 0.00 2.74
747 776 9.750783 AAAATTCTTATATGATGAGATGGAGGG 57.249 33.333 0.00 0.00 0.00 4.30
748 777 6.881067 TTCTTATATGATGAGATGGAGGGG 57.119 41.667 0.00 0.00 0.00 4.79
749 778 5.283763 TCTTATATGATGAGATGGAGGGGG 58.716 45.833 0.00 0.00 0.00 5.40
750 779 3.592221 ATATGATGAGATGGAGGGGGT 57.408 47.619 0.00 0.00 0.00 4.95
751 780 4.717328 ATATGATGAGATGGAGGGGGTA 57.283 45.455 0.00 0.00 0.00 3.69
752 781 3.592221 ATGATGAGATGGAGGGGGTAT 57.408 47.619 0.00 0.00 0.00 2.73
753 782 2.624495 TGATGAGATGGAGGGGGTATG 58.376 52.381 0.00 0.00 0.00 2.39
754 783 2.182088 TGATGAGATGGAGGGGGTATGA 59.818 50.000 0.00 0.00 0.00 2.15
755 784 2.887454 TGAGATGGAGGGGGTATGAA 57.113 50.000 0.00 0.00 0.00 2.57
756 785 3.367280 TGAGATGGAGGGGGTATGAAT 57.633 47.619 0.00 0.00 0.00 2.57
757 786 3.680169 TGAGATGGAGGGGGTATGAATT 58.320 45.455 0.00 0.00 0.00 2.17
758 787 4.054369 TGAGATGGAGGGGGTATGAATTT 58.946 43.478 0.00 0.00 0.00 1.82
759 788 4.141181 TGAGATGGAGGGGGTATGAATTTG 60.141 45.833 0.00 0.00 0.00 2.32
760 789 3.140895 AGATGGAGGGGGTATGAATTTGG 59.859 47.826 0.00 0.00 0.00 3.28
818 847 0.746659 GATGGGCTAACATGGGCAAC 59.253 55.000 0.00 0.00 0.00 4.17
820 849 0.178950 TGGGCTAACATGGGCAACAA 60.179 50.000 0.00 0.00 39.74 2.83
848 877 2.247635 ACAGCTATCACCTTCCCCTCTA 59.752 50.000 0.00 0.00 0.00 2.43
849 878 2.630580 CAGCTATCACCTTCCCCTCTAC 59.369 54.545 0.00 0.00 0.00 2.59
850 879 2.520549 AGCTATCACCTTCCCCTCTACT 59.479 50.000 0.00 0.00 0.00 2.57
851 880 2.894765 GCTATCACCTTCCCCTCTACTC 59.105 54.545 0.00 0.00 0.00 2.59
852 881 3.437344 GCTATCACCTTCCCCTCTACTCT 60.437 52.174 0.00 0.00 0.00 3.24
853 882 2.534042 TCACCTTCCCCTCTACTCTG 57.466 55.000 0.00 0.00 0.00 3.35
854 883 0.827368 CACCTTCCCCTCTACTCTGC 59.173 60.000 0.00 0.00 0.00 4.26
855 884 0.713579 ACCTTCCCCTCTACTCTGCT 59.286 55.000 0.00 0.00 0.00 4.24
856 885 1.930914 ACCTTCCCCTCTACTCTGCTA 59.069 52.381 0.00 0.00 0.00 3.49
857 886 2.315155 ACCTTCCCCTCTACTCTGCTAA 59.685 50.000 0.00 0.00 0.00 3.09
858 887 3.246021 ACCTTCCCCTCTACTCTGCTAAA 60.246 47.826 0.00 0.00 0.00 1.85
859 888 3.970640 CCTTCCCCTCTACTCTGCTAAAT 59.029 47.826 0.00 0.00 0.00 1.40
862 891 4.142790 TCCCCTCTACTCTGCTAAATACG 58.857 47.826 0.00 0.00 0.00 3.06
865 894 2.974536 CTCTACTCTGCTAAATACGCGC 59.025 50.000 5.73 0.00 0.00 6.86
867 896 2.295253 ACTCTGCTAAATACGCGCTT 57.705 45.000 5.73 0.00 0.00 4.68
868 897 3.431922 ACTCTGCTAAATACGCGCTTA 57.568 42.857 5.73 0.00 0.00 3.09
869 898 3.372954 ACTCTGCTAAATACGCGCTTAG 58.627 45.455 5.73 12.21 0.00 2.18
870 899 3.181489 ACTCTGCTAAATACGCGCTTAGT 60.181 43.478 5.73 0.00 0.00 2.24
871 900 3.369385 TCTGCTAAATACGCGCTTAGTC 58.631 45.455 5.73 8.07 0.00 2.59
872 901 3.066342 TCTGCTAAATACGCGCTTAGTCT 59.934 43.478 5.73 0.00 0.00 3.24
873 902 3.113322 TGCTAAATACGCGCTTAGTCTG 58.887 45.455 5.73 0.00 0.00 3.51
875 904 3.179992 GCTAAATACGCGCTTAGTCTGTC 59.820 47.826 5.73 0.00 0.00 3.51
877 906 4.627611 AAATACGCGCTTAGTCTGTCTA 57.372 40.909 5.73 0.00 0.00 2.59
878 907 4.832590 AATACGCGCTTAGTCTGTCTAT 57.167 40.909 5.73 0.00 0.00 1.98
879 908 4.832590 ATACGCGCTTAGTCTGTCTATT 57.167 40.909 5.73 0.00 0.00 1.73
880 909 2.798680 ACGCGCTTAGTCTGTCTATTG 58.201 47.619 5.73 0.00 0.00 1.90
881 910 2.120232 CGCGCTTAGTCTGTCTATTGG 58.880 52.381 5.56 0.00 0.00 3.16
882 911 2.479730 CGCGCTTAGTCTGTCTATTGGT 60.480 50.000 5.56 0.00 0.00 3.67
884 913 3.364062 CGCTTAGTCTGTCTATTGGTCG 58.636 50.000 0.00 0.00 0.00 4.79
885 914 3.117046 GCTTAGTCTGTCTATTGGTCGC 58.883 50.000 0.00 0.00 0.00 5.19
888 917 2.111384 AGTCTGTCTATTGGTCGCCAT 58.889 47.619 0.00 0.00 31.53 4.40
889 918 2.159043 AGTCTGTCTATTGGTCGCCATG 60.159 50.000 0.00 0.00 31.53 3.66
890 919 1.831106 TCTGTCTATTGGTCGCCATGT 59.169 47.619 0.00 0.00 31.53 3.21
891 920 2.236146 TCTGTCTATTGGTCGCCATGTT 59.764 45.455 0.00 0.00 31.53 2.71
892 921 3.009723 CTGTCTATTGGTCGCCATGTTT 58.990 45.455 0.00 0.00 31.53 2.83
893 922 2.746904 TGTCTATTGGTCGCCATGTTTG 59.253 45.455 0.00 0.00 31.53 2.93
894 923 2.097466 GTCTATTGGTCGCCATGTTTGG 59.903 50.000 0.00 0.00 46.66 3.28
902 931 4.100479 CCATGTTTGGCTGCTCCA 57.900 55.556 0.00 0.00 44.85 3.86
909 938 2.853542 TGGCTGCTCCAACCTCCA 60.854 61.111 0.00 0.00 43.21 3.86
910 939 2.436109 GGCTGCTCCAACCTCCAA 59.564 61.111 0.00 0.00 34.01 3.53
911 940 1.228552 GGCTGCTCCAACCTCCAAA 60.229 57.895 0.00 0.00 34.01 3.28
912 941 1.527433 GGCTGCTCCAACCTCCAAAC 61.527 60.000 0.00 0.00 34.01 2.93
913 942 0.538287 GCTGCTCCAACCTCCAAACT 60.538 55.000 0.00 0.00 0.00 2.66
914 943 1.986882 CTGCTCCAACCTCCAAACTT 58.013 50.000 0.00 0.00 0.00 2.66
915 944 1.610522 CTGCTCCAACCTCCAAACTTG 59.389 52.381 0.00 0.00 0.00 3.16
916 945 1.214175 TGCTCCAACCTCCAAACTTGA 59.786 47.619 0.00 0.00 0.00 3.02
917 946 1.882623 GCTCCAACCTCCAAACTTGAG 59.117 52.381 0.00 0.00 0.00 3.02
918 947 2.487265 GCTCCAACCTCCAAACTTGAGA 60.487 50.000 0.00 0.00 0.00 3.27
919 948 3.812167 GCTCCAACCTCCAAACTTGAGAT 60.812 47.826 0.00 0.00 0.00 2.75
920 949 3.754965 TCCAACCTCCAAACTTGAGATG 58.245 45.455 0.00 0.00 0.00 2.90
921 950 3.138283 TCCAACCTCCAAACTTGAGATGT 59.862 43.478 0.00 0.00 0.00 3.06
922 951 4.349636 TCCAACCTCCAAACTTGAGATGTA 59.650 41.667 0.00 0.00 0.00 2.29
923 952 5.014123 TCCAACCTCCAAACTTGAGATGTAT 59.986 40.000 0.00 0.00 0.00 2.29
924 953 5.711976 CCAACCTCCAAACTTGAGATGTATT 59.288 40.000 0.00 0.00 0.00 1.89
925 954 6.127897 CCAACCTCCAAACTTGAGATGTATTC 60.128 42.308 0.00 0.00 0.00 1.75
926 955 5.501156 ACCTCCAAACTTGAGATGTATTCC 58.499 41.667 0.00 0.00 0.00 3.01
927 956 5.251700 ACCTCCAAACTTGAGATGTATTCCT 59.748 40.000 0.00 0.00 0.00 3.36
928 957 5.819901 CCTCCAAACTTGAGATGTATTCCTC 59.180 44.000 0.00 0.00 0.00 3.71
929 958 6.373005 TCCAAACTTGAGATGTATTCCTCA 57.627 37.500 0.00 0.00 37.61 3.86
930 959 6.409704 TCCAAACTTGAGATGTATTCCTCAG 58.590 40.000 0.00 0.00 40.13 3.35
931 960 6.213397 TCCAAACTTGAGATGTATTCCTCAGA 59.787 38.462 0.00 0.00 40.13 3.27
932 961 6.881065 CCAAACTTGAGATGTATTCCTCAGAA 59.119 38.462 0.00 0.00 40.13 3.02
933 962 7.148340 CCAAACTTGAGATGTATTCCTCAGAAC 60.148 40.741 0.00 0.00 40.13 3.01
934 963 6.611613 ACTTGAGATGTATTCCTCAGAACA 57.388 37.500 0.00 0.00 40.13 3.18
935 964 7.192852 ACTTGAGATGTATTCCTCAGAACAT 57.807 36.000 0.00 0.00 40.13 2.71
936 965 7.628234 ACTTGAGATGTATTCCTCAGAACATT 58.372 34.615 0.00 0.00 40.13 2.71
937 966 7.768120 ACTTGAGATGTATTCCTCAGAACATTC 59.232 37.037 0.00 0.00 40.13 2.67
938 967 7.429374 TGAGATGTATTCCTCAGAACATTCT 57.571 36.000 0.00 0.00 34.78 2.40
939 968 7.855375 TGAGATGTATTCCTCAGAACATTCTT 58.145 34.615 0.00 0.00 34.78 2.52
940 969 7.767659 TGAGATGTATTCCTCAGAACATTCTTG 59.232 37.037 0.00 0.00 34.78 3.02
941 970 7.855375 AGATGTATTCCTCAGAACATTCTTGA 58.145 34.615 0.00 0.00 34.74 3.02
942 971 7.986320 AGATGTATTCCTCAGAACATTCTTGAG 59.014 37.037 11.23 11.23 34.74 3.02
943 972 7.009179 TGTATTCCTCAGAACATTCTTGAGT 57.991 36.000 14.52 4.36 34.74 3.41
944 973 8.134202 TGTATTCCTCAGAACATTCTTGAGTA 57.866 34.615 14.52 7.39 34.74 2.59
945 974 8.593679 TGTATTCCTCAGAACATTCTTGAGTAA 58.406 33.333 14.52 9.21 34.74 2.24
946 975 9.606631 GTATTCCTCAGAACATTCTTGAGTAAT 57.393 33.333 14.52 13.30 34.74 1.89
950 979 9.658799 TCCTCAGAACATTCTTGAGTAATAAAG 57.341 33.333 14.52 0.00 34.74 1.85
951 980 8.394121 CCTCAGAACATTCTTGAGTAATAAAGC 58.606 37.037 14.52 0.00 34.74 3.51
952 981 7.963981 TCAGAACATTCTTGAGTAATAAAGCG 58.036 34.615 0.00 0.00 34.74 4.68
953 982 7.602644 TCAGAACATTCTTGAGTAATAAAGCGT 59.397 33.333 0.00 0.00 34.74 5.07
954 983 7.689812 CAGAACATTCTTGAGTAATAAAGCGTG 59.310 37.037 0.00 0.00 34.74 5.34
955 984 7.387948 AGAACATTCTTGAGTAATAAAGCGTGT 59.612 33.333 0.00 0.00 32.55 4.49
956 985 6.831769 ACATTCTTGAGTAATAAAGCGTGTG 58.168 36.000 0.00 0.00 0.00 3.82
957 986 6.426937 ACATTCTTGAGTAATAAAGCGTGTGT 59.573 34.615 0.00 0.00 0.00 3.72
958 987 6.854496 TTCTTGAGTAATAAAGCGTGTGTT 57.146 33.333 0.00 0.00 0.00 3.32
959 988 6.854496 TCTTGAGTAATAAAGCGTGTGTTT 57.146 33.333 0.00 0.00 0.00 2.83
960 989 7.254227 TCTTGAGTAATAAAGCGTGTGTTTT 57.746 32.000 0.00 0.00 32.89 2.43
961 990 8.367943 TCTTGAGTAATAAAGCGTGTGTTTTA 57.632 30.769 0.00 0.00 35.61 1.52
962 991 8.492748 TCTTGAGTAATAAAGCGTGTGTTTTAG 58.507 33.333 0.00 0.00 34.80 1.85
1012 1042 1.677966 CTGCTGATGCTGCTTGGGT 60.678 57.895 0.00 0.00 40.48 4.51
1252 1288 1.279749 CCCCCTCCTCCCTGGTAAAC 61.280 65.000 0.00 0.00 37.07 2.01
1290 1326 4.775253 CCCAACTTTCCCTTGCCTAATTTA 59.225 41.667 0.00 0.00 0.00 1.40
1311 1347 8.831715 ATTTATGTTCAATTTTCACTTCCACC 57.168 30.769 0.00 0.00 0.00 4.61
1312 1348 7.595819 TTATGTTCAATTTTCACTTCCACCT 57.404 32.000 0.00 0.00 0.00 4.00
1313 1349 5.514274 TGTTCAATTTTCACTTCCACCTC 57.486 39.130 0.00 0.00 0.00 3.85
1314 1350 4.952957 TGTTCAATTTTCACTTCCACCTCA 59.047 37.500 0.00 0.00 0.00 3.86
1399 1443 0.322906 TGCCAATGCGGTTGATGGTA 60.323 50.000 3.45 0.00 40.37 3.25
1400 1444 0.100503 GCCAATGCGGTTGATGGTAC 59.899 55.000 3.45 0.00 40.37 3.34
1401 1445 1.750193 CCAATGCGGTTGATGGTACT 58.250 50.000 3.45 0.00 40.37 2.73
1402 1446 1.670811 CCAATGCGGTTGATGGTACTC 59.329 52.381 3.45 0.00 40.37 2.59
1403 1447 1.670811 CAATGCGGTTGATGGTACTCC 59.329 52.381 0.00 0.00 40.37 3.85
1404 1448 0.180406 ATGCGGTTGATGGTACTCCC 59.820 55.000 0.00 0.00 0.00 4.30
1405 1449 0.907704 TGCGGTTGATGGTACTCCCT 60.908 55.000 0.00 0.00 0.00 4.20
1406 1450 0.179081 GCGGTTGATGGTACTCCCTC 60.179 60.000 0.00 0.00 0.00 4.30
1407 1451 1.486211 CGGTTGATGGTACTCCCTCT 58.514 55.000 0.00 0.00 31.14 3.69
1408 1452 1.137086 CGGTTGATGGTACTCCCTCTG 59.863 57.143 0.00 0.00 31.14 3.35
1409 1453 2.188817 GGTTGATGGTACTCCCTCTGT 58.811 52.381 0.00 0.00 31.14 3.41
1410 1454 3.371965 GGTTGATGGTACTCCCTCTGTA 58.628 50.000 0.00 0.00 31.14 2.74
1411 1455 3.773119 GGTTGATGGTACTCCCTCTGTAA 59.227 47.826 0.00 0.00 31.14 2.41
1412 1456 4.224370 GGTTGATGGTACTCCCTCTGTAAA 59.776 45.833 0.00 0.00 31.14 2.01
1413 1457 5.176592 GTTGATGGTACTCCCTCTGTAAAC 58.823 45.833 0.00 0.00 31.14 2.01
1414 1458 4.684724 TGATGGTACTCCCTCTGTAAACT 58.315 43.478 0.00 0.00 31.14 2.66
1415 1459 5.834460 TGATGGTACTCCCTCTGTAAACTA 58.166 41.667 0.00 0.00 31.14 2.24
1416 1460 6.258354 TGATGGTACTCCCTCTGTAAACTAA 58.742 40.000 0.00 0.00 31.14 2.24
1417 1461 6.901300 TGATGGTACTCCCTCTGTAAACTAAT 59.099 38.462 0.00 0.00 31.14 1.73
1418 1462 8.063153 TGATGGTACTCCCTCTGTAAACTAATA 58.937 37.037 0.00 0.00 31.14 0.98
1419 1463 9.091220 GATGGTACTCCCTCTGTAAACTAATAT 57.909 37.037 0.00 0.00 0.00 1.28
1421 1465 9.940974 TGGTACTCCCTCTGTAAACTAATATAA 57.059 33.333 0.00 0.00 0.00 0.98
1425 1469 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
1426 1470 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
1427 1471 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
1428 1472 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
1429 1473 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
1468 1512 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
1469 1513 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
1470 1514 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
1471 1515 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
1472 1516 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
1489 1533 8.642432 CAGAGGGAGTAGATTATAAATCACACA 58.358 37.037 2.74 0.00 0.00 3.72
1544 1628 5.571357 CGGACAATTTTGTAATACTTGGTGC 59.429 40.000 0.00 0.00 42.43 5.01
1545 1629 6.451393 GGACAATTTTGTAATACTTGGTGCA 58.549 36.000 0.00 0.00 42.43 4.57
1565 1649 3.242543 GCAGTGAATAATCGCAAGTCTGG 60.243 47.826 0.00 0.00 38.58 3.86
1571 1655 0.322975 AATCGCAAGTCTGGCTCACT 59.677 50.000 0.00 0.00 39.48 3.41
1578 1662 4.697514 GCAAGTCTGGCTCACTATTATCA 58.302 43.478 0.00 0.00 0.00 2.15
1579 1663 4.749099 GCAAGTCTGGCTCACTATTATCAG 59.251 45.833 0.00 0.00 0.00 2.90
1581 1665 4.222336 AGTCTGGCTCACTATTATCAGCT 58.778 43.478 0.00 0.00 32.14 4.24
1584 1668 6.071447 AGTCTGGCTCACTATTATCAGCTATG 60.071 42.308 0.00 0.00 32.14 2.23
1585 1669 5.777223 TCTGGCTCACTATTATCAGCTATGT 59.223 40.000 0.00 0.00 32.14 2.29
1600 1684 1.669265 CTATGTCGTCGGAGTAGCACA 59.331 52.381 0.00 0.00 0.00 4.57
1601 1685 0.885879 ATGTCGTCGGAGTAGCACAA 59.114 50.000 0.00 0.00 0.00 3.33
1602 1686 0.885879 TGTCGTCGGAGTAGCACAAT 59.114 50.000 0.00 0.00 0.00 2.71
1603 1687 1.269166 GTCGTCGGAGTAGCACAATG 58.731 55.000 0.00 0.00 0.00 2.82
1629 1713 5.927954 TTTAAACCCTGACGATGTTGTAC 57.072 39.130 0.00 0.00 0.00 2.90
1690 1774 5.179929 TGATTACGACTTTATAGATCGCGGA 59.820 40.000 6.13 0.00 39.47 5.54
1697 1781 7.708322 ACGACTTTATAGATCGCGGATATACTA 59.292 37.037 6.13 2.01 39.47 1.82
1711 1795 8.480066 CGCGGATATACTATTTGTGCTATATTG 58.520 37.037 0.00 0.00 0.00 1.90
1762 1846 4.701956 ATCCTTTGTTTTGGCATACTCG 57.298 40.909 0.00 0.00 0.00 4.18
1812 1897 1.135575 GCAAGCCTGGAATCTCGTTTG 60.136 52.381 0.00 0.00 0.00 2.93
1830 1915 5.233476 TCGTTTGTTGTCAGACTGTTCATAC 59.767 40.000 1.59 0.00 0.00 2.39
1846 1931 7.094377 ACTGTTCATACACTTTGTTTCACTTGT 60.094 33.333 0.00 0.00 0.00 3.16
1849 1934 8.583765 GTTCATACACTTTGTTTCACTTGTTTC 58.416 33.333 0.00 0.00 0.00 2.78
1851 1936 7.967854 TCATACACTTTGTTTCACTTGTTTCTG 59.032 33.333 0.00 0.00 0.00 3.02
1852 1937 6.325919 ACACTTTGTTTCACTTGTTTCTGA 57.674 33.333 0.00 0.00 0.00 3.27
1853 1938 6.744112 ACACTTTGTTTCACTTGTTTCTGAA 58.256 32.000 0.00 0.00 0.00 3.02
1854 1939 6.863126 ACACTTTGTTTCACTTGTTTCTGAAG 59.137 34.615 0.00 0.00 0.00 3.02
1867 1956 4.200092 GTTTCTGAAGAGTGTCCAAGGTT 58.800 43.478 0.00 0.00 0.00 3.50
1881 1970 3.901222 TCCAAGGTTCAGACACATACAGA 59.099 43.478 0.00 0.00 0.00 3.41
1884 1976 5.180117 CCAAGGTTCAGACACATACAGAAAG 59.820 44.000 0.00 0.00 0.00 2.62
1892 1984 5.063186 CAGACACATACAGAAAGCACAGATC 59.937 44.000 0.00 0.00 0.00 2.75
1982 2129 9.737844 TGCATGGCTAATGTAAATCTGAATATA 57.262 29.630 0.00 0.00 38.65 0.86
2084 2232 7.187824 TCTCTTGCTGGAATCTGTTTATACT 57.812 36.000 0.00 0.00 0.00 2.12
2106 2254 3.026694 TGATGGACTCGTGAGTGATGAT 58.973 45.455 7.35 0.00 42.66 2.45
2108 2256 4.276926 TGATGGACTCGTGAGTGATGATAG 59.723 45.833 7.35 0.00 42.66 2.08
2109 2257 3.621558 TGGACTCGTGAGTGATGATAGT 58.378 45.455 7.35 0.00 42.66 2.12
2181 3301 2.164624 CACCGACAAGTTCACCCAAAAA 59.835 45.455 0.00 0.00 0.00 1.94
2187 3307 5.262588 ACAAGTTCACCCAAAAAGCTTAG 57.737 39.130 0.00 0.00 0.00 2.18
2285 3414 3.537795 ACCCGAGGTAGCTATCCATTA 57.462 47.619 0.00 0.00 32.11 1.90
2288 3417 5.586877 ACCCGAGGTAGCTATCCATTATTA 58.413 41.667 0.00 0.00 32.11 0.98
2293 3422 4.715297 AGGTAGCTATCCATTATTACCCCG 59.285 45.833 0.00 0.00 32.81 5.73
2304 3433 0.696501 ATTACCCCGTTTGCTGTCCT 59.303 50.000 0.00 0.00 0.00 3.85
2312 3441 1.388547 GTTTGCTGTCCTGTGGTTCA 58.611 50.000 0.00 0.00 0.00 3.18
2328 3457 4.515191 GTGGTTCACAGCTTTCATAGTTCA 59.485 41.667 0.00 0.00 34.08 3.18
2329 3458 5.008613 GTGGTTCACAGCTTTCATAGTTCAA 59.991 40.000 0.00 0.00 34.08 2.69
2330 3459 5.592282 TGGTTCACAGCTTTCATAGTTCAAA 59.408 36.000 0.00 0.00 0.00 2.69
2331 3460 5.915196 GGTTCACAGCTTTCATAGTTCAAAC 59.085 40.000 0.00 0.00 0.00 2.93
2332 3461 6.238759 GGTTCACAGCTTTCATAGTTCAAACT 60.239 38.462 0.46 0.46 42.91 2.66
2333 3462 6.942532 TCACAGCTTTCATAGTTCAAACTT 57.057 33.333 0.00 0.00 40.37 2.66
2334 3463 6.959361 TCACAGCTTTCATAGTTCAAACTTC 58.041 36.000 0.00 0.00 40.37 3.01
2335 3464 6.542005 TCACAGCTTTCATAGTTCAAACTTCA 59.458 34.615 0.00 0.00 40.37 3.02
2336 3465 7.066887 TCACAGCTTTCATAGTTCAAACTTCAA 59.933 33.333 0.00 0.00 40.37 2.69
2451 3582 6.456501 AGTGAAACGCTTTACTGATCTAAGT 58.543 36.000 0.00 0.00 45.86 2.24
2642 3776 5.319140 TGAAAGCTCATGATGTTTGGATG 57.681 39.130 0.00 0.00 0.00 3.51
2735 3869 3.808728 TCCTGTCTGTTCTTTGGACTTG 58.191 45.455 0.00 0.00 0.00 3.16
2768 3902 5.012239 TCTGCTGCTGATTTGATTACCTTT 58.988 37.500 5.03 0.00 0.00 3.11
2769 3903 5.124457 TCTGCTGCTGATTTGATTACCTTTC 59.876 40.000 5.03 0.00 0.00 2.62
2770 3904 4.158394 TGCTGCTGATTTGATTACCTTTCC 59.842 41.667 0.00 0.00 0.00 3.13
2784 3919 6.542795 TTACCTTTCCCCCTTTTACCTTTA 57.457 37.500 0.00 0.00 0.00 1.85
2785 3920 5.421740 ACCTTTCCCCCTTTTACCTTTAA 57.578 39.130 0.00 0.00 0.00 1.52
2786 3921 5.149976 ACCTTTCCCCCTTTTACCTTTAAC 58.850 41.667 0.00 0.00 0.00 2.01
2868 4003 0.595095 CTCAAGCTGGCCAAACAGTC 59.405 55.000 7.01 0.00 40.59 3.51
2955 4090 2.670210 CGCGGTTCGTTTACCACCC 61.670 63.158 0.00 0.00 38.12 4.61
2961 4096 2.098934 GGTTCGTTTACCACCCGTTTTT 59.901 45.455 0.00 0.00 38.12 1.94
2974 4110 5.221165 CCACCCGTTTTTCCATCCATATAAC 60.221 44.000 0.00 0.00 0.00 1.89
3159 4296 9.886132 TTCTCCTAGATGTATTTCTTACAAACC 57.114 33.333 0.00 0.00 43.84 3.27
3230 4367 5.931146 ACTGTTTGTTCTGCATTGTTTTTCA 59.069 32.000 0.00 0.00 0.00 2.69
3288 4427 3.238441 GTGATGTCGAGTCTCAACTGAC 58.762 50.000 0.00 0.00 35.28 3.51
3305 4444 2.262915 CGAGTCTGAGGTGGTGGC 59.737 66.667 0.00 0.00 0.00 5.01
3319 4564 5.274822 AGGTGGTGGCTTACTTATGTAGTA 58.725 41.667 0.00 0.00 38.33 1.82
3345 4590 4.567971 TGATCCCAAACATGCATGAAAAC 58.432 39.130 32.75 14.38 0.00 2.43
3354 4599 3.963676 GCATGAAAACACACAGGCA 57.036 47.368 0.00 0.00 42.17 4.75
3376 4628 0.652592 CGAGCCTTACAATTCCTGCG 59.347 55.000 0.00 0.00 0.00 5.18
3378 4630 2.737359 CGAGCCTTACAATTCCTGCGTA 60.737 50.000 0.00 0.00 0.00 4.42
3394 4646 4.377431 CCTGCGTAGTTTCTTAGTTTGCAG 60.377 45.833 0.00 3.55 45.03 4.41
3504 4757 4.406456 TGGTGTTTAGACATTCCATTGCT 58.594 39.130 0.00 0.00 38.23 3.91
3558 4812 4.164843 AGCTGTTTTACTTCTCAACCCA 57.835 40.909 0.00 0.00 0.00 4.51
3562 4816 6.098266 AGCTGTTTTACTTCTCAACCCAAAAT 59.902 34.615 0.00 0.00 0.00 1.82
3574 4828 6.873076 TCTCAACCCAAAATGCATTATTTGTC 59.127 34.615 13.39 0.00 38.93 3.18
3577 4831 7.172875 TCAACCCAAAATGCATTATTTGTCTTG 59.827 33.333 13.39 15.26 38.93 3.02
3588 4842 7.381948 TGCATTATTTGTCTTGTGTTTGTGATC 59.618 33.333 0.00 0.00 0.00 2.92
3634 4900 3.243737 TGACCATACTATAGGCAACAGCG 60.244 47.826 4.43 0.00 41.41 5.18
3649 4915 4.663444 GCGCTAGCATGGACCTAG 57.337 61.111 16.45 0.00 44.35 3.02
3665 4931 9.458727 CATGGACCTAGCATGATCTTTTAATAT 57.541 33.333 0.00 0.00 0.00 1.28
3671 4937 8.725148 CCTAGCATGATCTTTTAATATGTGGAC 58.275 37.037 0.00 0.00 0.00 4.02
3687 4953 0.456312 GGACGACACTGAACTAGGCG 60.456 60.000 0.00 0.00 0.00 5.52
3703 4969 3.683581 GCGTCTTGCAGATTGTTCC 57.316 52.632 0.00 0.00 45.45 3.62
3713 5047 6.767902 TCTTGCAGATTGTTCCAAGGATATAC 59.232 38.462 0.00 0.00 36.30 1.47
3728 5062 8.778358 CCAAGGATATACTAAGAGTTGCAATTC 58.222 37.037 13.69 13.69 0.00 2.17
3742 5076 4.707030 TGCAATTCTAAACTGGCATCAG 57.293 40.909 0.00 0.00 46.10 2.90
3757 5091 6.205464 ACTGGCATCAGGAATTAATATCAACG 59.795 38.462 0.00 0.00 44.99 4.10
3761 5095 7.078228 GCATCAGGAATTAATATCAACGAACC 58.922 38.462 0.00 0.00 0.00 3.62
3797 5131 4.278310 AGTTTCAGTTTACACCTTGGCTT 58.722 39.130 0.00 0.00 0.00 4.35
3805 5139 6.010219 AGTTTACACCTTGGCTTGACATTAT 58.990 36.000 0.00 0.00 0.00 1.28
3825 5159 9.338622 ACATTATCTGTACCATTTAAGTTAGCC 57.661 33.333 0.00 0.00 35.91 3.93
3830 5164 6.150474 TCTGTACCATTTAAGTTAGCCAAAGC 59.850 38.462 0.00 0.00 40.32 3.51
3834 5168 5.248248 ACCATTTAAGTTAGCCAAAGCCAAT 59.752 36.000 0.00 0.00 41.25 3.16
3842 5176 3.407424 AGCCAAAGCCAATTTTTCTCC 57.593 42.857 0.00 0.00 41.25 3.71
3891 5230 7.023536 GGGTTATACCGCACAGAGGTGATAT 62.024 48.000 2.56 0.00 42.95 1.63
3892 5231 7.750934 GGGTTATACCGCACAGAGGTGATATA 61.751 46.154 2.56 0.00 42.95 0.86
3959 5298 4.392754 TGTTACAGCTGATACATTGCACAG 59.607 41.667 23.35 0.00 0.00 3.66
4026 5378 1.389609 GGGACGGGAAGAGTATGCGA 61.390 60.000 0.00 0.00 0.00 5.10
4030 5382 3.243636 GGACGGGAAGAGTATGCGATTAA 60.244 47.826 0.00 0.00 0.00 1.40
4034 5386 3.495001 GGGAAGAGTATGCGATTAAGTGC 59.505 47.826 0.00 0.00 0.00 4.40
4041 5393 3.904136 ATGCGATTAAGTGCTTATGGC 57.096 42.857 3.71 0.00 42.22 4.40
4062 5414 5.908831 TGGCCTAAAGTTATATTCCCTGAGA 59.091 40.000 3.32 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.446442 ACCTCGACCTACCTTCTACAA 57.554 47.619 0.00 0.00 0.00 2.41
9 10 0.834687 TGGCAACCTCGACCTACCTT 60.835 55.000 0.00 0.00 0.00 3.50
36 37 5.010933 TGACAAACAAGTTACAACCTGGAA 58.989 37.500 0.00 0.00 0.00 3.53
39 40 6.329496 ACAATGACAAACAAGTTACAACCTG 58.671 36.000 0.00 0.00 0.00 4.00
42 43 7.804614 TCAACAATGACAAACAAGTTACAAC 57.195 32.000 0.00 0.00 32.43 3.32
98 99 3.440173 GGTACATTATTCATCATGGCCCG 59.560 47.826 0.00 0.00 0.00 6.13
131 132 2.030363 CACTAATTTTGCAAGGACCGCA 60.030 45.455 0.00 0.00 37.68 5.69
152 155 7.263496 ACTATCCTAACGGTGTTTATGAAGAC 58.737 38.462 0.00 0.00 0.00 3.01
153 156 7.414222 ACTATCCTAACGGTGTTTATGAAGA 57.586 36.000 0.00 0.00 0.00 2.87
159 162 7.394359 AGTGAAGTACTATCCTAACGGTGTTTA 59.606 37.037 0.00 0.00 38.04 2.01
190 199 1.555075 ACTCGTTGTATGCCATGGTCT 59.445 47.619 14.67 3.38 0.00 3.85
214 223 2.824489 GGCGGCTCCTAACTTGGC 60.824 66.667 0.00 0.00 0.00 4.52
221 230 2.268920 CAAGCTTGGCGGCTCCTA 59.731 61.111 19.14 0.00 42.24 2.94
243 252 0.749818 TTCACCAAACCTTGCTCGCA 60.750 50.000 0.00 0.00 0.00 5.10
254 263 3.157087 GGCTTCTTCCTGATTCACCAAA 58.843 45.455 0.00 0.00 0.00 3.28
263 272 1.072331 GGTTCTGTGGCTTCTTCCTGA 59.928 52.381 0.00 0.00 0.00 3.86
267 276 2.303311 ACTAGGGTTCTGTGGCTTCTTC 59.697 50.000 0.00 0.00 0.00 2.87
269 278 1.903183 GACTAGGGTTCTGTGGCTTCT 59.097 52.381 0.00 0.00 0.00 2.85
274 283 1.196012 GGAGGACTAGGGTTCTGTGG 58.804 60.000 0.00 0.00 30.03 4.17
280 289 0.178873 TGCAAGGGAGGACTAGGGTT 60.179 55.000 0.00 0.00 0.00 4.11
303 313 9.905713 ATGTCTTGAGAAAATATAAGTAAGCCA 57.094 29.630 0.00 0.00 0.00 4.75
315 325 9.539194 AAGATAAAAGGGATGTCTTGAGAAAAT 57.461 29.630 0.00 0.00 0.00 1.82
366 387 1.348036 GTGACCTGTCAGGGCTAGTTT 59.652 52.381 25.56 0.49 46.32 2.66
375 396 0.758734 TTCTGGGTGTGACCTGTCAG 59.241 55.000 0.00 0.00 40.75 3.51
389 410 1.703411 TTCAAGTTGCCCCTTTCTGG 58.297 50.000 0.00 0.00 0.00 3.86
394 415 2.525368 GGTGTATTCAAGTTGCCCCTT 58.475 47.619 0.00 0.00 0.00 3.95
424 445 1.893137 AGTCGCTCAGTGATACCAACA 59.107 47.619 0.00 0.00 0.00 3.33
434 455 4.439057 TGAAACAAAGTTAGTCGCTCAGT 58.561 39.130 0.00 0.00 0.00 3.41
438 460 5.554822 TTGTTGAAACAAAGTTAGTCGCT 57.445 34.783 6.15 0.00 45.17 4.93
507 529 6.596106 ACGCACCAGTGTATGAATTACAAATA 59.404 34.615 0.00 0.00 42.37 1.40
533 555 1.376037 GGTCTTCGTCAAGGGGCAG 60.376 63.158 0.00 0.00 0.00 4.85
540 562 6.687081 AATAACTTTGTTGGTCTTCGTCAA 57.313 33.333 0.00 0.00 0.00 3.18
549 571 6.696441 TTACACGGAAATAACTTTGTTGGT 57.304 33.333 0.00 0.00 0.00 3.67
555 577 7.391620 TCCTCAGATTACACGGAAATAACTTT 58.608 34.615 0.00 0.00 0.00 2.66
557 579 6.540438 TCCTCAGATTACACGGAAATAACT 57.460 37.500 0.00 0.00 0.00 2.24
558 580 5.234543 GCTCCTCAGATTACACGGAAATAAC 59.765 44.000 0.00 0.00 0.00 1.89
565 587 2.271800 GTTGCTCCTCAGATTACACGG 58.728 52.381 0.00 0.00 0.00 4.94
594 616 2.306847 AGACAAACCAACGGCAAAGAT 58.693 42.857 0.00 0.00 0.00 2.40
604 626 4.930963 TCGTCGTAAACTAGACAAACCAA 58.069 39.130 0.00 0.00 37.23 3.67
624 646 7.755582 TGTATGTTCATACATCTGACTTTCG 57.244 36.000 18.05 0.00 43.81 3.46
630 652 9.889128 TTCAATCTTGTATGTTCATACATCTGA 57.111 29.630 21.20 18.79 43.81 3.27
721 750 9.750783 CCCTCCATCTCATCATATAAGAATTTT 57.249 33.333 0.00 0.00 0.00 1.82
722 751 8.334734 CCCCTCCATCTCATCATATAAGAATTT 58.665 37.037 0.00 0.00 0.00 1.82
723 752 7.092083 CCCCCTCCATCTCATCATATAAGAATT 60.092 40.741 0.00 0.00 0.00 2.17
724 753 6.389278 CCCCCTCCATCTCATCATATAAGAAT 59.611 42.308 0.00 0.00 0.00 2.40
726 755 5.222844 ACCCCCTCCATCTCATCATATAAGA 60.223 44.000 0.00 0.00 0.00 2.10
731 760 4.047135 TCATACCCCCTCCATCTCATCATA 59.953 45.833 0.00 0.00 0.00 2.15
733 762 2.182088 TCATACCCCCTCCATCTCATCA 59.818 50.000 0.00 0.00 0.00 3.07
736 765 2.887454 TTCATACCCCCTCCATCTCA 57.113 50.000 0.00 0.00 0.00 3.27
737 766 4.401925 CAAATTCATACCCCCTCCATCTC 58.598 47.826 0.00 0.00 0.00 2.75
739 768 3.500343 CCAAATTCATACCCCCTCCATC 58.500 50.000 0.00 0.00 0.00 3.51
740 769 2.426268 GCCAAATTCATACCCCCTCCAT 60.426 50.000 0.00 0.00 0.00 3.41
741 770 1.063266 GCCAAATTCATACCCCCTCCA 60.063 52.381 0.00 0.00 0.00 3.86
743 772 2.310538 CAGCCAAATTCATACCCCCTC 58.689 52.381 0.00 0.00 0.00 4.30
744 773 1.689258 GCAGCCAAATTCATACCCCCT 60.689 52.381 0.00 0.00 0.00 4.79
746 775 0.385390 CGCAGCCAAATTCATACCCC 59.615 55.000 0.00 0.00 0.00 4.95
747 776 0.385390 CCGCAGCCAAATTCATACCC 59.615 55.000 0.00 0.00 0.00 3.69
748 777 0.385390 CCCGCAGCCAAATTCATACC 59.615 55.000 0.00 0.00 0.00 2.73
749 778 0.249031 GCCCGCAGCCAAATTCATAC 60.249 55.000 0.00 0.00 34.35 2.39
750 779 2.114638 GCCCGCAGCCAAATTCATA 58.885 52.632 0.00 0.00 34.35 2.15
751 780 2.894919 GCCCGCAGCCAAATTCAT 59.105 55.556 0.00 0.00 34.35 2.57
818 847 1.098050 GTGATAGCTGTGGGCCTTTG 58.902 55.000 4.53 0.00 43.05 2.77
820 849 0.916358 AGGTGATAGCTGTGGGCCTT 60.916 55.000 4.53 0.00 43.05 4.35
848 877 2.295253 AAGCGCGTATTTAGCAGAGT 57.705 45.000 8.43 0.00 34.19 3.24
849 878 3.372954 ACTAAGCGCGTATTTAGCAGAG 58.627 45.455 19.74 7.91 31.56 3.35
850 879 3.066342 AGACTAAGCGCGTATTTAGCAGA 59.934 43.478 19.74 0.00 31.56 4.26
851 880 3.180584 CAGACTAAGCGCGTATTTAGCAG 59.819 47.826 19.74 8.71 31.56 4.24
852 881 3.113322 CAGACTAAGCGCGTATTTAGCA 58.887 45.455 19.74 0.00 31.56 3.49
853 882 3.114065 ACAGACTAAGCGCGTATTTAGC 58.886 45.455 19.74 14.71 31.56 3.09
854 883 4.599047 AGACAGACTAAGCGCGTATTTAG 58.401 43.478 18.81 18.81 33.98 1.85
855 884 4.627611 AGACAGACTAAGCGCGTATTTA 57.372 40.909 8.43 3.87 0.00 1.40
856 885 3.505464 AGACAGACTAAGCGCGTATTT 57.495 42.857 8.43 2.74 0.00 1.40
857 886 4.832590 ATAGACAGACTAAGCGCGTATT 57.167 40.909 8.43 5.91 34.56 1.89
858 887 4.537965 CAATAGACAGACTAAGCGCGTAT 58.462 43.478 8.43 0.00 34.56 3.06
859 888 3.242969 CCAATAGACAGACTAAGCGCGTA 60.243 47.826 8.43 1.12 34.56 4.42
862 891 3.117046 GACCAATAGACAGACTAAGCGC 58.883 50.000 0.00 0.00 34.56 5.92
865 894 3.130516 TGGCGACCAATAGACAGACTAAG 59.869 47.826 0.00 0.00 34.56 2.18
867 896 2.730382 TGGCGACCAATAGACAGACTA 58.270 47.619 0.00 0.00 35.42 2.59
868 897 1.557099 TGGCGACCAATAGACAGACT 58.443 50.000 0.00 0.00 0.00 3.24
869 898 2.205074 CATGGCGACCAATAGACAGAC 58.795 52.381 2.68 0.00 36.95 3.51
870 899 1.831106 ACATGGCGACCAATAGACAGA 59.169 47.619 0.00 0.00 36.95 3.41
871 900 2.315925 ACATGGCGACCAATAGACAG 57.684 50.000 0.00 0.00 36.95 3.51
872 901 2.746904 CAAACATGGCGACCAATAGACA 59.253 45.455 0.00 0.00 36.95 3.41
873 902 2.097466 CCAAACATGGCGACCAATAGAC 59.903 50.000 0.00 0.00 36.95 2.59
875 904 1.202290 GCCAAACATGGCGACCAATAG 60.202 52.381 3.80 0.09 45.79 1.73
877 906 1.591183 GCCAAACATGGCGACCAAT 59.409 52.632 3.80 0.00 45.79 3.16
878 907 3.046870 GCCAAACATGGCGACCAA 58.953 55.556 3.80 0.00 45.79 3.67
885 914 4.100479 TGGAGCAGCCAAACATGG 57.900 55.556 0.00 0.00 45.87 3.66
893 922 1.228552 TTTGGAGGTTGGAGCAGCC 60.229 57.895 0.00 0.00 34.90 4.85
894 923 0.538287 AGTTTGGAGGTTGGAGCAGC 60.538 55.000 0.00 0.00 0.00 5.25
895 924 1.610522 CAAGTTTGGAGGTTGGAGCAG 59.389 52.381 0.00 0.00 0.00 4.24
896 925 1.214175 TCAAGTTTGGAGGTTGGAGCA 59.786 47.619 0.00 0.00 0.00 4.26
897 926 1.882623 CTCAAGTTTGGAGGTTGGAGC 59.117 52.381 0.00 0.00 0.00 4.70
898 927 3.492102 TCTCAAGTTTGGAGGTTGGAG 57.508 47.619 0.00 0.00 33.18 3.86
899 928 3.138283 ACATCTCAAGTTTGGAGGTTGGA 59.862 43.478 0.00 0.00 33.18 3.53
900 929 3.490348 ACATCTCAAGTTTGGAGGTTGG 58.510 45.455 0.00 0.00 33.18 3.77
901 930 6.127897 GGAATACATCTCAAGTTTGGAGGTTG 60.128 42.308 6.16 0.00 33.18 3.77
902 931 5.946377 GGAATACATCTCAAGTTTGGAGGTT 59.054 40.000 6.16 0.00 33.18 3.50
903 932 5.251700 AGGAATACATCTCAAGTTTGGAGGT 59.748 40.000 0.00 6.13 33.18 3.85
904 933 5.749462 AGGAATACATCTCAAGTTTGGAGG 58.251 41.667 0.00 0.00 33.18 4.30
905 934 6.409704 TGAGGAATACATCTCAAGTTTGGAG 58.590 40.000 0.00 0.00 37.11 3.86
906 935 6.213397 TCTGAGGAATACATCTCAAGTTTGGA 59.787 38.462 0.00 0.00 39.23 3.53
907 936 6.409704 TCTGAGGAATACATCTCAAGTTTGG 58.590 40.000 0.00 0.00 39.23 3.28
908 937 7.388776 TGTTCTGAGGAATACATCTCAAGTTTG 59.611 37.037 0.00 0.00 39.23 2.93
909 938 7.453393 TGTTCTGAGGAATACATCTCAAGTTT 58.547 34.615 0.00 0.00 39.23 2.66
910 939 7.009179 TGTTCTGAGGAATACATCTCAAGTT 57.991 36.000 0.00 0.00 39.23 2.66
911 940 6.611613 TGTTCTGAGGAATACATCTCAAGT 57.388 37.500 0.00 0.00 39.23 3.16
912 941 7.986320 AGAATGTTCTGAGGAATACATCTCAAG 59.014 37.037 0.00 0.00 39.23 3.02
913 942 7.855375 AGAATGTTCTGAGGAATACATCTCAA 58.145 34.615 0.00 0.00 39.23 3.02
914 943 7.429374 AGAATGTTCTGAGGAATACATCTCA 57.571 36.000 0.00 0.00 37.65 3.27
915 944 7.984050 TCAAGAATGTTCTGAGGAATACATCTC 59.016 37.037 0.00 0.00 37.65 2.75
916 945 7.855375 TCAAGAATGTTCTGAGGAATACATCT 58.145 34.615 0.00 0.00 37.65 2.90
917 946 7.768120 ACTCAAGAATGTTCTGAGGAATACATC 59.232 37.037 18.00 0.00 37.65 3.06
918 947 7.628234 ACTCAAGAATGTTCTGAGGAATACAT 58.372 34.615 18.00 0.00 37.65 2.29
919 948 7.009179 ACTCAAGAATGTTCTGAGGAATACA 57.991 36.000 18.00 0.00 37.65 2.29
920 949 9.606631 ATTACTCAAGAATGTTCTGAGGAATAC 57.393 33.333 19.67 0.00 40.34 1.89
924 953 9.658799 CTTTATTACTCAAGAATGTTCTGAGGA 57.341 33.333 18.00 11.78 37.65 3.71
925 954 8.394121 GCTTTATTACTCAAGAATGTTCTGAGG 58.606 37.037 18.00 7.09 37.65 3.86
926 955 8.113062 CGCTTTATTACTCAAGAATGTTCTGAG 58.887 37.037 14.83 14.83 37.65 3.35
927 956 7.602644 ACGCTTTATTACTCAAGAATGTTCTGA 59.397 33.333 0.00 0.00 37.65 3.27
928 957 7.689812 CACGCTTTATTACTCAAGAATGTTCTG 59.310 37.037 0.00 0.00 37.65 3.02
929 958 7.387948 ACACGCTTTATTACTCAAGAATGTTCT 59.612 33.333 0.00 0.00 39.74 3.01
930 959 7.478667 CACACGCTTTATTACTCAAGAATGTTC 59.521 37.037 0.00 0.00 0.00 3.18
931 960 7.041372 ACACACGCTTTATTACTCAAGAATGTT 60.041 33.333 0.00 0.00 0.00 2.71
932 961 6.426937 ACACACGCTTTATTACTCAAGAATGT 59.573 34.615 0.00 0.00 0.00 2.71
933 962 6.831769 ACACACGCTTTATTACTCAAGAATG 58.168 36.000 0.00 0.00 0.00 2.67
934 963 7.435068 AACACACGCTTTATTACTCAAGAAT 57.565 32.000 0.00 0.00 0.00 2.40
935 964 6.854496 AACACACGCTTTATTACTCAAGAA 57.146 33.333 0.00 0.00 0.00 2.52
936 965 6.854496 AAACACACGCTTTATTACTCAAGA 57.146 33.333 0.00 0.00 0.00 3.02
937 966 7.268447 GCTAAAACACACGCTTTATTACTCAAG 59.732 37.037 0.00 0.00 0.00 3.02
938 967 7.073265 GCTAAAACACACGCTTTATTACTCAA 58.927 34.615 0.00 0.00 0.00 3.02
939 968 6.347888 GGCTAAAACACACGCTTTATTACTCA 60.348 38.462 0.00 0.00 0.00 3.41
940 969 6.019762 GGCTAAAACACACGCTTTATTACTC 58.980 40.000 0.00 0.00 0.00 2.59
941 970 5.704053 AGGCTAAAACACACGCTTTATTACT 59.296 36.000 0.00 0.00 0.00 2.24
942 971 5.934921 AGGCTAAAACACACGCTTTATTAC 58.065 37.500 0.00 0.00 0.00 1.89
943 972 5.701750 TGAGGCTAAAACACACGCTTTATTA 59.298 36.000 0.00 0.00 0.00 0.98
944 973 4.517453 TGAGGCTAAAACACACGCTTTATT 59.483 37.500 0.00 0.00 0.00 1.40
945 974 4.069304 TGAGGCTAAAACACACGCTTTAT 58.931 39.130 0.00 0.00 0.00 1.40
946 975 3.468770 TGAGGCTAAAACACACGCTTTA 58.531 40.909 0.00 0.00 0.00 1.85
947 976 2.294074 TGAGGCTAAAACACACGCTTT 58.706 42.857 0.00 0.00 0.00 3.51
948 977 1.961793 TGAGGCTAAAACACACGCTT 58.038 45.000 0.00 0.00 0.00 4.68
949 978 1.961793 TTGAGGCTAAAACACACGCT 58.038 45.000 0.00 0.00 0.00 5.07
950 979 2.766970 TTTGAGGCTAAAACACACGC 57.233 45.000 0.00 0.00 0.00 5.34
1212 1248 1.202486 CGTAGGTTGACCATGGCGTAT 60.202 52.381 13.04 0.00 38.89 3.06
1252 1288 4.096190 AGTTGGGGCAATCATAGAGATG 57.904 45.455 0.00 0.00 36.96 2.90
1290 1326 5.598005 TGAGGTGGAAGTGAAAATTGAACAT 59.402 36.000 0.00 0.00 0.00 2.71
1310 1346 2.301296 ACACTGTGATTCTGAGGTGAGG 59.699 50.000 15.86 0.00 0.00 3.86
1311 1347 3.674528 ACACTGTGATTCTGAGGTGAG 57.325 47.619 15.86 0.00 0.00 3.51
1312 1348 5.745312 AATACACTGTGATTCTGAGGTGA 57.255 39.130 15.86 0.00 0.00 4.02
1313 1349 6.169094 AGAAATACACTGTGATTCTGAGGTG 58.831 40.000 15.86 0.00 0.00 4.00
1314 1350 6.365970 AGAAATACACTGTGATTCTGAGGT 57.634 37.500 15.86 0.00 0.00 3.85
1399 1443 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
1400 1444 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
1401 1445 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
1402 1446 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
1403 1447 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
1442 1486 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
1443 1487 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
1444 1488 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
1445 1489 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
1446 1490 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
1461 1505 9.877222 TGTGATTTATAATCTACTCCCTCTGTA 57.123 33.333 0.00 0.00 0.00 2.74
1462 1506 8.643324 GTGTGATTTATAATCTACTCCCTCTGT 58.357 37.037 0.00 0.00 0.00 3.41
1463 1507 8.642432 TGTGTGATTTATAATCTACTCCCTCTG 58.358 37.037 0.00 0.00 0.00 3.35
1464 1508 8.783660 TGTGTGATTTATAATCTACTCCCTCT 57.216 34.615 0.00 0.00 0.00 3.69
1489 1533 1.209504 TGCTAGCGCTGGAAACCTAAT 59.790 47.619 26.32 0.00 36.97 1.73
1516 1560 8.414778 ACCAAGTATTACAAAATTGTCCGAAAA 58.585 29.630 1.37 0.00 42.35 2.29
1522 1566 7.114811 CACTGCACCAAGTATTACAAAATTGTC 59.885 37.037 1.37 0.00 42.35 3.18
1523 1567 6.922957 CACTGCACCAAGTATTACAAAATTGT 59.077 34.615 4.01 4.01 44.86 2.71
1524 1568 7.144661 TCACTGCACCAAGTATTACAAAATTG 58.855 34.615 0.00 0.00 0.00 2.32
1544 1628 3.242543 GCCAGACTTGCGATTATTCACTG 60.243 47.826 0.00 0.00 0.00 3.66
1545 1629 2.939103 GCCAGACTTGCGATTATTCACT 59.061 45.455 0.00 0.00 0.00 3.41
1565 1649 5.704888 ACGACATAGCTGATAATAGTGAGC 58.295 41.667 0.00 0.00 0.00 4.26
1571 1655 5.001874 ACTCCGACGACATAGCTGATAATA 58.998 41.667 0.00 0.00 0.00 0.98
1578 1662 0.945813 GCTACTCCGACGACATAGCT 59.054 55.000 13.59 0.00 36.23 3.32
1579 1663 0.661552 TGCTACTCCGACGACATAGC 59.338 55.000 13.84 13.84 38.97 2.97
1581 1665 1.741528 TGTGCTACTCCGACGACATA 58.258 50.000 0.00 0.00 0.00 2.29
1584 1668 1.135489 TCATTGTGCTACTCCGACGAC 60.135 52.381 0.00 0.00 0.00 4.34
1585 1669 1.135489 GTCATTGTGCTACTCCGACGA 60.135 52.381 0.00 0.00 0.00 4.20
1600 1684 5.710099 ACATCGTCAGGGTTTAAATGTCATT 59.290 36.000 0.00 0.00 0.00 2.57
1601 1685 5.253330 ACATCGTCAGGGTTTAAATGTCAT 58.747 37.500 0.00 0.00 0.00 3.06
1602 1686 4.647611 ACATCGTCAGGGTTTAAATGTCA 58.352 39.130 0.00 0.00 0.00 3.58
1603 1687 5.048991 ACAACATCGTCAGGGTTTAAATGTC 60.049 40.000 0.00 0.00 0.00 3.06
1670 1754 6.915544 ATATCCGCGATCTATAAAGTCGTA 57.084 37.500 8.23 0.00 37.66 3.43
1697 1781 6.128486 TGGGACATGTCAATATAGCACAAAT 58.872 36.000 26.47 0.00 0.00 2.32
1701 1785 6.000219 AGATTGGGACATGTCAATATAGCAC 59.000 40.000 26.47 6.32 39.30 4.40
1711 1795 3.375299 GCAGTGTAAGATTGGGACATGTC 59.625 47.826 17.91 17.91 39.30 3.06
1762 1846 4.453136 TGTTTAACTGTAAATCCTGGCGAC 59.547 41.667 0.00 0.00 31.94 5.19
1812 1897 6.037172 ACAAAGTGTATGAACAGTCTGACAAC 59.963 38.462 10.88 8.00 38.36 3.32
1830 1915 7.083858 TCTTCAGAAACAAGTGAAACAAAGTG 58.916 34.615 0.00 0.00 41.43 3.16
1846 1931 4.080582 TGAACCTTGGACACTCTTCAGAAA 60.081 41.667 0.00 0.00 0.00 2.52
1849 1934 3.070159 TCTGAACCTTGGACACTCTTCAG 59.930 47.826 8.33 8.33 37.18 3.02
1851 1936 3.181465 TGTCTGAACCTTGGACACTCTTC 60.181 47.826 0.00 0.00 35.44 2.87
1852 1937 2.771943 TGTCTGAACCTTGGACACTCTT 59.228 45.455 0.00 0.00 35.44 2.85
1853 1938 2.398588 TGTCTGAACCTTGGACACTCT 58.601 47.619 0.00 0.00 35.44 3.24
1854 1939 2.910688 TGTCTGAACCTTGGACACTC 57.089 50.000 0.00 0.00 35.44 3.51
1867 1956 4.039124 TCTGTGCTTTCTGTATGTGTCTGA 59.961 41.667 0.00 0.00 0.00 3.27
1881 1970 6.889301 TCTTTTGATTCTGATCTGTGCTTT 57.111 33.333 0.00 0.00 33.28 3.51
1884 1976 6.849502 TCATTCTTTTGATTCTGATCTGTGC 58.150 36.000 0.00 0.00 33.28 4.57
1937 2076 5.556355 TGCATTTTTAGAGATCAGTGCAG 57.444 39.130 0.00 0.00 36.54 4.41
1982 2129 8.689972 CCTAGCATAAATTTCTTGACATCCTTT 58.310 33.333 0.00 0.00 0.00 3.11
1985 2132 6.547510 ACCCTAGCATAAATTTCTTGACATCC 59.452 38.462 0.00 0.00 0.00 3.51
2055 2203 4.775236 ACAGATTCCAGCAAGAGATAACC 58.225 43.478 0.00 0.00 0.00 2.85
2084 2232 2.825532 TCATCACTCACGAGTCCATCAA 59.174 45.455 0.00 0.00 40.20 2.57
2130 3247 9.860650 AAAGTGATGGGCATAATAGTAAACATA 57.139 29.630 0.00 0.00 0.00 2.29
2133 3250 8.345565 CAGAAAGTGATGGGCATAATAGTAAAC 58.654 37.037 0.00 0.00 0.00 2.01
2145 3262 1.885871 GGTGCAGAAAGTGATGGGC 59.114 57.895 0.00 0.00 0.00 5.36
2146 3263 0.321564 TCGGTGCAGAAAGTGATGGG 60.322 55.000 0.00 0.00 0.00 4.00
2262 3391 3.317455 TGGATAGCTACCTCGGGTTAA 57.683 47.619 0.00 0.00 37.09 2.01
2267 3396 5.163437 GGGTAATAATGGATAGCTACCTCGG 60.163 48.000 0.00 0.00 31.19 4.63
2285 3414 0.696501 AGGACAGCAAACGGGGTAAT 59.303 50.000 0.00 0.00 0.00 1.89
2288 3417 2.113139 CAGGACAGCAAACGGGGT 59.887 61.111 0.00 0.00 0.00 4.95
2293 3422 1.065551 GTGAACCACAGGACAGCAAAC 59.934 52.381 0.00 0.00 34.08 2.93
2304 3433 4.085357 ACTATGAAAGCTGTGAACCACA 57.915 40.909 0.00 0.00 42.45 4.17
2312 3441 6.942532 TGAAGTTTGAACTATGAAAGCTGT 57.057 33.333 0.00 0.00 38.57 4.40
2328 3457 8.260270 AGTAGACGTTTTACAGTTTGAAGTTT 57.740 30.769 12.02 0.00 0.00 2.66
2329 3458 7.838771 AGTAGACGTTTTACAGTTTGAAGTT 57.161 32.000 12.02 0.00 0.00 2.66
2330 3459 7.838771 AAGTAGACGTTTTACAGTTTGAAGT 57.161 32.000 12.02 0.00 0.00 3.01
2331 3460 8.810427 TGTAAGTAGACGTTTTACAGTTTGAAG 58.190 33.333 12.02 0.00 33.65 3.02
2332 3461 8.700722 TGTAAGTAGACGTTTTACAGTTTGAA 57.299 30.769 12.02 0.00 33.65 2.69
2333 3462 8.876275 ATGTAAGTAGACGTTTTACAGTTTGA 57.124 30.769 15.81 0.12 39.73 2.69
2334 3463 9.365311 CAATGTAAGTAGACGTTTTACAGTTTG 57.635 33.333 15.81 13.27 39.73 2.93
2335 3464 9.101655 ACAATGTAAGTAGACGTTTTACAGTTT 57.898 29.630 15.81 8.26 39.73 2.66
2336 3465 8.652810 ACAATGTAAGTAGACGTTTTACAGTT 57.347 30.769 15.81 10.40 39.73 3.16
2451 3582 7.092891 ACCCATAAATCACTTGTCTCATCAGTA 60.093 37.037 0.00 0.00 0.00 2.74
2627 3761 2.730382 AGCAGCATCCAAACATCATGA 58.270 42.857 0.00 0.00 0.00 3.07
2642 3776 2.586792 CTGGACCCCAGTAGCAGC 59.413 66.667 4.88 0.00 45.82 5.25
2735 3869 1.753649 TCAGCAGCAGATCTGGAGTAC 59.246 52.381 23.89 7.00 43.06 2.73
2768 3902 8.115384 GGTTATTAGTTAAAGGTAAAAGGGGGA 58.885 37.037 0.00 0.00 0.00 4.81
2769 3903 8.117956 AGGTTATTAGTTAAAGGTAAAAGGGGG 58.882 37.037 0.00 0.00 0.00 5.40
2868 4003 3.680620 ATGGATGTGGACGTGCGGG 62.681 63.158 1.60 0.00 0.00 6.13
2948 4083 1.424302 TGGATGGAAAAACGGGTGGTA 59.576 47.619 0.00 0.00 0.00 3.25
3027 4164 8.917088 TCCTTCATTTCTTTTTCTTTCACATCT 58.083 29.630 0.00 0.00 0.00 2.90
3046 4183 4.927049 TCCAGATCAAGCTTTTCCTTCAT 58.073 39.130 0.00 0.00 0.00 2.57
3167 4304 9.921637 TTCTGTGAAAACACTAAGTGAAAAATT 57.078 25.926 0.00 0.00 36.96 1.82
3190 4327 7.881775 ACAAACAGTCCAGAAGTTTATTTCT 57.118 32.000 0.00 0.00 37.90 2.52
3288 4427 1.821061 AAGCCACCACCTCAGACTCG 61.821 60.000 0.00 0.00 0.00 4.18
3319 4564 6.734502 TTCATGCATGTTTGGGATCAATAT 57.265 33.333 25.43 0.00 32.28 1.28
3354 4599 2.746472 GCAGGAATTGTAAGGCTCGGAT 60.746 50.000 0.00 0.00 0.00 4.18
3370 4622 3.744426 GCAAACTAAGAAACTACGCAGGA 59.256 43.478 0.00 0.00 0.00 3.86
3376 4628 5.529800 TGAACCCTGCAAACTAAGAAACTAC 59.470 40.000 0.00 0.00 0.00 2.73
3378 4630 4.532834 TGAACCCTGCAAACTAAGAAACT 58.467 39.130 0.00 0.00 0.00 2.66
3419 4671 9.903682 CATCTCATAAATAAATACTTTGCCCAG 57.096 33.333 0.00 0.00 0.00 4.45
3504 4757 3.314693 CCTAGGAAGCTATTACACCCCA 58.685 50.000 1.05 0.00 0.00 4.96
3555 4809 6.427547 ACACAAGACAAATAATGCATTTTGGG 59.572 34.615 18.75 16.59 37.19 4.12
3558 4812 8.891720 ACAAACACAAGACAAATAATGCATTTT 58.108 25.926 18.75 6.94 34.49 1.82
3562 4816 6.567959 TCACAAACACAAGACAAATAATGCA 58.432 32.000 0.00 0.00 0.00 3.96
3574 4828 6.089016 GCAGATTTCATGATCACAAACACAAG 59.911 38.462 0.00 0.00 0.00 3.16
3577 4831 5.706916 AGCAGATTTCATGATCACAAACAC 58.293 37.500 0.00 0.00 0.00 3.32
3611 4877 4.561530 CGCTGTTGCCTATAGTATGGTCAT 60.562 45.833 0.00 0.00 35.36 3.06
3613 4879 3.318017 CGCTGTTGCCTATAGTATGGTC 58.682 50.000 0.00 0.00 35.36 4.02
3634 4900 1.345741 TCATGCTAGGTCCATGCTAGC 59.654 52.381 18.63 18.63 44.38 3.42
3649 4915 7.072030 GTCGTCCACATATTAAAAGATCATGC 58.928 38.462 0.00 0.00 0.00 4.06
3671 4937 0.522180 AGACGCCTAGTTCAGTGTCG 59.478 55.000 5.21 0.00 34.53 4.35
3703 4969 9.553064 AGAATTGCAACTCTTAGTATATCCTTG 57.447 33.333 4.20 0.00 0.00 3.61
3713 5047 6.072508 TGCCAGTTTAGAATTGCAACTCTTAG 60.073 38.462 16.54 2.27 0.00 2.18
3728 5062 9.288576 TGATATTAATTCCTGATGCCAGTTTAG 57.711 33.333 0.00 0.00 38.74 1.85
3742 5076 5.332808 CGTCCGGTTCGTTGATATTAATTCC 60.333 44.000 0.00 0.00 0.00 3.01
3757 5091 2.277084 ACTAAATGATGCGTCCGGTTC 58.723 47.619 0.00 0.00 0.00 3.62
3761 5095 3.370978 ACTGAAACTAAATGATGCGTCCG 59.629 43.478 2.83 0.00 0.00 4.79
3805 5139 6.150474 GCTTTGGCTAACTTAAATGGTACAGA 59.850 38.462 0.00 0.00 37.32 3.41
3825 5159 9.657419 AAGTAATATGGAGAAAAATTGGCTTTG 57.343 29.630 0.00 0.00 0.00 2.77
3842 5176 9.520204 CCTTAATGCACTTTCCAAAGTAATATG 57.480 33.333 4.38 0.00 46.89 1.78
3891 5230 7.343357 CAGAATACTCCCACCCAAATAAACTA 58.657 38.462 0.00 0.00 0.00 2.24
3892 5231 6.187682 CAGAATACTCCCACCCAAATAAACT 58.812 40.000 0.00 0.00 0.00 2.66
3988 5328 5.825679 CGTCCCCATCAGGAATATGTTAAAA 59.174 40.000 0.00 0.00 37.78 1.52
3991 5331 3.326588 CCGTCCCCATCAGGAATATGTTA 59.673 47.826 0.00 0.00 37.78 2.41
4026 5378 8.996651 ATAACTTTAGGCCATAAGCACTTAAT 57.003 30.769 5.01 0.00 46.50 1.40
4030 5382 7.665974 GGAATATAACTTTAGGCCATAAGCACT 59.334 37.037 5.01 0.00 46.50 4.40
4034 5386 8.383175 TCAGGGAATATAACTTTAGGCCATAAG 58.617 37.037 5.01 10.55 0.00 1.73
4041 5393 6.456501 CCGTCTCAGGGAATATAACTTTAGG 58.543 44.000 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.