Multiple sequence alignment - TraesCS5B01G127700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G127700 chr5B 100.000 3283 0 0 1 3283 232979949 232976667 0.000000e+00 6063.0
1 TraesCS5B01G127700 chr5D 94.421 1416 44 8 904 2292 217297760 217296353 0.000000e+00 2145.0
2 TraesCS5B01G127700 chr5D 85.198 1162 153 17 1032 2185 217325175 217326325 0.000000e+00 1175.0
3 TraesCS5B01G127700 chr5D 75.699 572 110 18 2432 2993 556094082 556093530 3.250000e-65 259.0
4 TraesCS5B01G127700 chr5D 95.349 43 2 0 13 55 217297919 217297877 5.880000e-08 69.4
5 TraesCS5B01G127700 chr5A 95.311 1109 33 6 955 2055 289856938 289855841 0.000000e+00 1742.0
6 TraesCS5B01G127700 chr5A 85.030 1169 152 17 1028 2185 289892013 289893169 0.000000e+00 1168.0
7 TraesCS5B01G127700 chr5A 89.736 682 58 7 229 901 289857897 289857219 0.000000e+00 861.0
8 TraesCS5B01G127700 chr5A 91.878 197 14 1 1 197 289858093 289857899 1.160000e-69 274.0
9 TraesCS5B01G127700 chr5A 84.512 297 21 2 2054 2326 289852578 289852283 1.500000e-68 270.0
10 TraesCS5B01G127700 chr5A 85.294 238 28 5 669 900 674365026 674365262 4.230000e-59 239.0
11 TraesCS5B01G127700 chr5A 75.229 218 38 14 2441 2655 607186551 607186347 4.510000e-14 89.8
12 TraesCS5B01G127700 chr5A 92.453 53 3 1 911 963 289857183 289857132 1.260000e-09 75.0
13 TraesCS5B01G127700 chr4D 84.286 490 60 11 440 919 327385385 327384903 2.310000e-126 462.0
14 TraesCS5B01G127700 chr4D 75.842 505 100 16 2430 2926 111131741 111132231 1.520000e-58 237.0
15 TraesCS5B01G127700 chr4D 70.639 579 132 24 2431 2999 452298035 452297485 3.490000e-15 93.5
16 TraesCS5B01G127700 chr4A 83.539 486 67 8 445 919 143695599 143696082 3.010000e-120 442.0
17 TraesCS5B01G127700 chr2D 83.412 422 46 12 488 901 233535008 233535413 1.440000e-98 370.0
18 TraesCS5B01G127700 chr1D 81.758 455 56 14 455 900 212495384 212495820 4.030000e-94 355.0
19 TraesCS5B01G127700 chr1D 90.299 134 12 1 768 900 393916839 393916706 1.210000e-39 174.0
20 TraesCS5B01G127700 chr3A 80.237 506 67 21 413 901 663684036 663683547 1.870000e-92 350.0
21 TraesCS5B01G127700 chr3A 84.969 326 39 8 591 910 726455848 726456169 4.090000e-84 322.0
22 TraesCS5B01G127700 chr3A 76.227 387 79 10 2577 2957 203998481 203998102 3.340000e-45 193.0
23 TraesCS5B01G127700 chr1A 78.893 488 67 19 421 900 268911857 268912316 6.890000e-77 298.0
24 TraesCS5B01G127700 chr2A 74.823 564 119 13 2433 2990 564613525 564614071 1.970000e-57 233.0
25 TraesCS5B01G127700 chr2A 74.763 527 108 20 2430 2947 419477104 419476594 2.570000e-51 213.0
26 TraesCS5B01G127700 chr6D 75.327 535 102 21 2431 2951 315366216 315365698 2.550000e-56 230.0
27 TraesCS5B01G127700 chr3B 75.189 528 106 18 2431 2949 82823453 82823964 3.300000e-55 226.0
28 TraesCS5B01G127700 chr3B 73.158 570 116 24 2433 2999 115239371 115239906 1.570000e-38 171.0
29 TraesCS5B01G127700 chr6B 81.884 276 41 5 543 814 678599727 678599997 1.190000e-54 224.0
30 TraesCS5B01G127700 chr6B 78.545 275 54 4 2677 2949 129770656 129770385 3.370000e-40 176.0
31 TraesCS5B01G127700 chr3D 76.501 383 70 18 2580 2951 100515188 100514815 1.200000e-44 191.0
32 TraesCS5B01G127700 chr3D 74.214 477 89 21 2524 2990 447617142 447616690 5.630000e-38 169.0
33 TraesCS5B01G127700 chr6A 91.791 134 10 1 768 900 407342071 407341938 5.590000e-43 185.0
34 TraesCS5B01G127700 chr6A 92.126 127 10 0 774 900 553718659 553718785 2.600000e-41 180.0
35 TraesCS5B01G127700 chr2B 89.928 139 12 2 763 900 362524758 362524895 9.360000e-41 178.0
36 TraesCS5B01G127700 chr7B 77.358 212 34 7 694 900 481283820 481283618 2.680000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G127700 chr5B 232976667 232979949 3282 True 6063.0 6063 100.000 1 3283 1 chr5B.!!$R1 3282
1 TraesCS5B01G127700 chr5D 217325175 217326325 1150 False 1175.0 1175 85.198 1032 2185 1 chr5D.!!$F1 1153
2 TraesCS5B01G127700 chr5D 217296353 217297919 1566 True 1107.2 2145 94.885 13 2292 2 chr5D.!!$R2 2279
3 TraesCS5B01G127700 chr5D 556093530 556094082 552 True 259.0 259 75.699 2432 2993 1 chr5D.!!$R1 561
4 TraesCS5B01G127700 chr5A 289892013 289893169 1156 False 1168.0 1168 85.030 1028 2185 1 chr5A.!!$F1 1157
5 TraesCS5B01G127700 chr5A 289852283 289858093 5810 True 644.4 1742 90.778 1 2326 5 chr5A.!!$R2 2325
6 TraesCS5B01G127700 chr2A 564613525 564614071 546 False 233.0 233 74.823 2433 2990 1 chr2A.!!$F1 557
7 TraesCS5B01G127700 chr2A 419476594 419477104 510 True 213.0 213 74.763 2430 2947 1 chr2A.!!$R1 517
8 TraesCS5B01G127700 chr6D 315365698 315366216 518 True 230.0 230 75.327 2431 2951 1 chr6D.!!$R1 520
9 TraesCS5B01G127700 chr3B 82823453 82823964 511 False 226.0 226 75.189 2431 2949 1 chr3B.!!$F1 518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
692 701 0.459585 TCTGACGGCTTATCCAACGC 60.460 55.000 0.0 0.0 34.01 4.84 F
1155 1397 1.204704 CAGTACCCATTCTCAGCGACA 59.795 52.381 0.0 0.0 0.00 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2223 5828 0.460459 GGGTTAGAAGCGAGACTGGC 60.460 60.0 0.41 0.41 0.0 4.85 R
3015 6630 0.394192 TCGGCCTCCTTCATATGCAG 59.606 55.0 0.00 0.00 0.0 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 5.880887 AGGATCGTGGACTTAAAGATTTTCC 59.119 40.000 0.00 0.00 0.00 3.13
48 49 6.206048 GTGGACTTAAAGATTTTCCTTTCGGA 59.794 38.462 0.00 0.00 37.52 4.55
55 56 7.617041 AAAGATTTTCCTTTCGGATGACTAG 57.383 36.000 0.00 0.00 39.58 2.57
58 59 3.973206 TTCCTTTCGGATGACTAGCAA 57.027 42.857 0.00 0.00 39.58 3.91
66 67 5.739752 TCGGATGACTAGCAAATTGATTG 57.260 39.130 0.00 0.00 42.21 2.67
80 81 5.559148 AATTGATTGCCCAGGTTTTTGTA 57.441 34.783 0.00 0.00 0.00 2.41
94 95 8.387354 CCAGGTTTTTGTATTGTTTTTGAAGAC 58.613 33.333 0.00 0.00 0.00 3.01
96 97 7.551262 AGGTTTTTGTATTGTTTTTGAAGACCC 59.449 33.333 0.00 0.00 0.00 4.46
153 154 9.790389 CTATTTACGTTCATTCTAGAACTGAGT 57.210 33.333 7.48 10.03 44.37 3.41
159 160 6.690957 CGTTCATTCTAGAACTGAGTGAGATC 59.309 42.308 7.48 2.20 44.37 2.75
200 201 9.516314 AGTAAAAAGAAAAGAAGTCAATTTCCG 57.484 29.630 6.17 0.00 34.39 4.30
201 202 9.297586 GTAAAAAGAAAAGAAGTCAATTTCCGT 57.702 29.630 6.17 0.00 34.39 4.69
202 203 7.987268 AAAAGAAAAGAAGTCAATTTCCGTC 57.013 32.000 6.17 0.00 34.39 4.79
203 204 5.690997 AGAAAAGAAGTCAATTTCCGTCC 57.309 39.130 6.17 0.00 34.39 4.79
204 205 5.130350 AGAAAAGAAGTCAATTTCCGTCCA 58.870 37.500 6.17 0.00 34.39 4.02
205 206 5.770162 AGAAAAGAAGTCAATTTCCGTCCAT 59.230 36.000 6.17 0.00 34.39 3.41
206 207 6.265422 AGAAAAGAAGTCAATTTCCGTCCATT 59.735 34.615 6.17 0.00 34.39 3.16
207 208 5.629079 AAGAAGTCAATTTCCGTCCATTC 57.371 39.130 0.00 0.00 0.00 2.67
208 209 4.010349 AGAAGTCAATTTCCGTCCATTCC 58.990 43.478 0.00 0.00 0.00 3.01
209 210 3.721087 AGTCAATTTCCGTCCATTCCT 57.279 42.857 0.00 0.00 0.00 3.36
210 211 4.034285 AGTCAATTTCCGTCCATTCCTT 57.966 40.909 0.00 0.00 0.00 3.36
211 212 4.407365 AGTCAATTTCCGTCCATTCCTTT 58.593 39.130 0.00 0.00 0.00 3.11
212 213 5.566469 AGTCAATTTCCGTCCATTCCTTTA 58.434 37.500 0.00 0.00 0.00 1.85
213 214 5.648092 AGTCAATTTCCGTCCATTCCTTTAG 59.352 40.000 0.00 0.00 0.00 1.85
214 215 4.947388 TCAATTTCCGTCCATTCCTTTAGG 59.053 41.667 0.00 0.00 0.00 2.69
215 216 4.855298 ATTTCCGTCCATTCCTTTAGGA 57.145 40.909 0.00 0.00 43.73 2.94
225 226 1.861982 TCCTTTAGGAACGGAGGGAG 58.138 55.000 0.00 0.00 42.18 4.30
226 227 1.078324 TCCTTTAGGAACGGAGGGAGT 59.922 52.381 0.00 0.00 42.18 3.85
227 228 1.207329 CCTTTAGGAACGGAGGGAGTG 59.793 57.143 0.00 0.00 37.39 3.51
253 254 7.857734 TTTTTAGAATTGGTGATCGCATAGA 57.142 32.000 8.82 0.00 0.00 1.98
308 309 9.798994 ATAGCAAATCAACATGAGAAAAAGATC 57.201 29.630 0.00 0.00 0.00 2.75
317 318 9.090692 CAACATGAGAAAAAGATCAACAAAACT 57.909 29.630 0.00 0.00 0.00 2.66
361 362 4.693283 TGAAGACTAAACCGGCATCTATG 58.307 43.478 0.00 0.00 0.00 2.23
401 402 6.006449 TGTGTGCATCTAGATCTAGCTATGA 58.994 40.000 25.11 11.73 33.32 2.15
419 420 6.322969 AGCTATGATGATGCCTGATTTTTCAA 59.677 34.615 0.00 0.00 0.00 2.69
432 433 5.486526 TGATTTTTCAAGGTGTGCAAAACT 58.513 33.333 0.00 0.00 0.00 2.66
433 434 5.580297 TGATTTTTCAAGGTGTGCAAAACTC 59.420 36.000 0.00 0.00 0.00 3.01
444 445 4.091365 GTGTGCAAAACTCAACAGAAAACC 59.909 41.667 0.00 0.00 0.00 3.27
447 448 5.178438 GTGCAAAACTCAACAGAAAACCAAA 59.822 36.000 0.00 0.00 0.00 3.28
449 450 6.077197 GCAAAACTCAACAGAAAACCAAAAC 58.923 36.000 0.00 0.00 0.00 2.43
451 452 5.476091 AACTCAACAGAAAACCAAAACCA 57.524 34.783 0.00 0.00 0.00 3.67
526 531 9.610705 TTCAATTTTGAAATCTGAAAACCATCA 57.389 25.926 3.31 0.00 43.62 3.07
540 548 3.552604 ACCATCATTTCGGTTTTGTCG 57.447 42.857 0.00 0.00 28.43 4.35
614 623 4.920640 TTTGGGTTCAAAAGCGTAATGA 57.079 36.364 0.00 0.00 39.64 2.57
625 634 4.592485 AAGCGTAATGAGCTGCTATAGT 57.408 40.909 0.15 0.00 45.31 2.12
639 648 8.156994 AGCTGCTATAGTACAGTACTTTCTAC 57.843 38.462 18.56 6.12 40.14 2.59
655 664 4.919774 TTCTACCCCATTTAGTGCTTCA 57.080 40.909 0.00 0.00 0.00 3.02
662 671 6.727394 ACCCCATTTAGTGCTTCAGTTTATA 58.273 36.000 0.00 0.00 0.00 0.98
665 674 7.502226 CCCCATTTAGTGCTTCAGTTTATATGA 59.498 37.037 0.00 0.00 0.00 2.15
666 675 9.071276 CCCATTTAGTGCTTCAGTTTATATGAT 57.929 33.333 0.00 0.00 0.00 2.45
692 701 0.459585 TCTGACGGCTTATCCAACGC 60.460 55.000 0.00 0.00 34.01 4.84
693 702 1.429148 CTGACGGCTTATCCAACGCC 61.429 60.000 0.00 0.00 40.40 5.68
695 704 2.900337 CGGCTTATCCAACGCCCC 60.900 66.667 0.00 0.00 40.70 5.80
704 713 5.803470 GCTTATCCAACGCCCCTTCTATATT 60.803 44.000 0.00 0.00 0.00 1.28
705 714 4.724279 ATCCAACGCCCCTTCTATATTT 57.276 40.909 0.00 0.00 0.00 1.40
778 788 5.163426 TGGAGTGATGTGTTTGCTCAAAATT 60.163 36.000 0.00 0.00 31.33 1.82
780 790 4.977963 AGTGATGTGTTTGCTCAAAATTCG 59.022 37.500 0.00 0.00 31.33 3.34
782 792 3.156511 TGTGTTTGCTCAAAATTCGCA 57.843 38.095 0.00 0.00 31.33 5.10
792 802 4.143263 GCTCAAAATTCGCATCAACTTTGG 60.143 41.667 0.00 0.00 0.00 3.28
956 993 6.851609 TGATTTTGCATGTATTGACTGTACC 58.148 36.000 0.00 0.00 0.00 3.34
996 1236 7.862512 TTGAGCAAACAAGAATTCCATTTTT 57.137 28.000 0.65 0.00 0.00 1.94
1155 1397 1.204704 CAGTACCCATTCTCAGCGACA 59.795 52.381 0.00 0.00 0.00 4.35
1345 1587 1.299165 ATCGTCGGTACTGCATCGC 60.299 57.895 0.00 0.00 0.00 4.58
1400 1647 6.285990 GCCTTATTTATTTCGGTCTCTGGTA 58.714 40.000 0.00 0.00 0.00 3.25
1733 2051 4.015764 GGTCGAACCTCTACTACTCCTTT 58.984 47.826 0.00 0.00 34.73 3.11
2257 5862 4.773013 TCTAACCCGGATTGTAACAATCC 58.227 43.478 19.24 19.24 42.11 3.01
2296 5901 2.027192 AGGCCTGAAGCATTTAACTCGA 60.027 45.455 3.11 0.00 46.50 4.04
2297 5902 2.945668 GGCCTGAAGCATTTAACTCGAT 59.054 45.455 0.00 0.00 46.50 3.59
2315 5920 5.760253 ACTCGATGTTGAATGGTATTGGATC 59.240 40.000 0.00 0.00 0.00 3.36
2336 5941 5.670149 TCGGTATCGAATACTCTCAACTC 57.330 43.478 0.00 0.00 43.03 3.01
2337 5942 5.366460 TCGGTATCGAATACTCTCAACTCT 58.634 41.667 0.00 0.00 43.03 3.24
2338 5943 5.821470 TCGGTATCGAATACTCTCAACTCTT 59.179 40.000 0.00 0.00 43.03 2.85
2339 5944 5.910166 CGGTATCGAATACTCTCAACTCTTG 59.090 44.000 0.00 0.00 39.00 3.02
2340 5945 6.458478 CGGTATCGAATACTCTCAACTCTTGT 60.458 42.308 0.00 0.00 39.00 3.16
2341 5946 7.254692 CGGTATCGAATACTCTCAACTCTTGTA 60.255 40.741 0.00 0.00 39.00 2.41
2342 5947 7.856894 GGTATCGAATACTCTCAACTCTTGTAC 59.143 40.741 0.00 0.00 36.04 2.90
2343 5948 7.633193 ATCGAATACTCTCAACTCTTGTACT 57.367 36.000 0.00 0.00 0.00 2.73
2344 5949 7.074507 TCGAATACTCTCAACTCTTGTACTC 57.925 40.000 0.00 0.00 0.00 2.59
2345 5950 5.960683 CGAATACTCTCAACTCTTGTACTCG 59.039 44.000 0.00 0.00 0.00 4.18
2346 5951 6.402334 CGAATACTCTCAACTCTTGTACTCGT 60.402 42.308 0.00 0.00 31.29 4.18
2347 5952 6.821031 ATACTCTCAACTCTTGTACTCGTT 57.179 37.500 0.00 0.00 0.00 3.85
2348 5953 5.110940 ACTCTCAACTCTTGTACTCGTTC 57.889 43.478 0.00 0.00 0.00 3.95
2349 5954 4.143194 TCTCAACTCTTGTACTCGTTCG 57.857 45.455 0.00 0.00 0.00 3.95
2350 5955 3.562973 TCTCAACTCTTGTACTCGTTCGT 59.437 43.478 0.00 0.00 0.00 3.85
2351 5956 3.624900 TCAACTCTTGTACTCGTTCGTG 58.375 45.455 0.00 0.00 0.00 4.35
2352 5957 2.701073 ACTCTTGTACTCGTTCGTGG 57.299 50.000 0.00 0.00 0.00 4.94
2353 5958 1.952296 ACTCTTGTACTCGTTCGTGGT 59.048 47.619 0.00 0.51 0.00 4.16
2354 5959 2.360165 ACTCTTGTACTCGTTCGTGGTT 59.640 45.455 0.00 0.00 0.00 3.67
2355 5960 3.565482 ACTCTTGTACTCGTTCGTGGTTA 59.435 43.478 0.00 0.00 0.00 2.85
2356 5961 4.036734 ACTCTTGTACTCGTTCGTGGTTAA 59.963 41.667 0.00 0.00 0.00 2.01
2357 5962 4.930963 TCTTGTACTCGTTCGTGGTTAAA 58.069 39.130 0.00 0.00 0.00 1.52
2358 5963 5.531634 TCTTGTACTCGTTCGTGGTTAAAT 58.468 37.500 0.00 0.00 0.00 1.40
2359 5964 6.676950 TCTTGTACTCGTTCGTGGTTAAATA 58.323 36.000 0.00 0.00 0.00 1.40
2360 5965 6.803320 TCTTGTACTCGTTCGTGGTTAAATAG 59.197 38.462 0.00 0.00 0.00 1.73
2361 5966 6.012658 TGTACTCGTTCGTGGTTAAATAGT 57.987 37.500 0.00 0.00 0.00 2.12
2362 5967 7.139896 TGTACTCGTTCGTGGTTAAATAGTA 57.860 36.000 0.00 0.00 0.00 1.82
2363 5968 7.589395 TGTACTCGTTCGTGGTTAAATAGTAA 58.411 34.615 0.00 0.00 0.00 2.24
2364 5969 8.243426 TGTACTCGTTCGTGGTTAAATAGTAAT 58.757 33.333 0.00 0.00 0.00 1.89
2365 5970 7.746526 ACTCGTTCGTGGTTAAATAGTAATC 57.253 36.000 0.00 0.00 0.00 1.75
2366 5971 7.542025 ACTCGTTCGTGGTTAAATAGTAATCT 58.458 34.615 0.00 0.00 0.00 2.40
2367 5972 7.699812 ACTCGTTCGTGGTTAAATAGTAATCTC 59.300 37.037 0.00 0.00 0.00 2.75
2368 5973 7.537715 TCGTTCGTGGTTAAATAGTAATCTCA 58.462 34.615 0.00 0.00 0.00 3.27
2369 5974 7.485913 TCGTTCGTGGTTAAATAGTAATCTCAC 59.514 37.037 0.00 0.00 0.00 3.51
2370 5975 7.274033 CGTTCGTGGTTAAATAGTAATCTCACA 59.726 37.037 0.00 0.00 0.00 3.58
2371 5976 8.378421 GTTCGTGGTTAAATAGTAATCTCACAC 58.622 37.037 0.00 0.00 0.00 3.82
2372 5977 6.748658 TCGTGGTTAAATAGTAATCTCACACG 59.251 38.462 0.00 0.00 45.44 4.49
2373 5978 6.529125 CGTGGTTAAATAGTAATCTCACACGT 59.471 38.462 0.00 0.00 41.03 4.49
2374 5979 7.462331 CGTGGTTAAATAGTAATCTCACACGTG 60.462 40.741 15.48 15.48 41.03 4.49
2375 5980 7.330208 GTGGTTAAATAGTAATCTCACACGTGT 59.670 37.037 17.22 17.22 0.00 4.49
2376 5981 8.522003 TGGTTAAATAGTAATCTCACACGTGTA 58.478 33.333 22.90 6.47 0.00 2.90
2377 5982 9.357652 GGTTAAATAGTAATCTCACACGTGTAA 57.642 33.333 22.90 5.99 0.00 2.41
2384 5989 8.821147 AGTAATCTCACACGTGTAAATACAAA 57.179 30.769 22.90 0.20 38.04 2.83
2385 5990 9.431887 AGTAATCTCACACGTGTAAATACAAAT 57.568 29.630 22.90 3.99 38.04 2.32
2386 5991 9.685005 GTAATCTCACACGTGTAAATACAAATC 57.315 33.333 22.90 2.63 38.04 2.17
2387 5992 8.547967 AATCTCACACGTGTAAATACAAATCT 57.452 30.769 22.90 0.00 38.04 2.40
2388 5993 7.956420 TCTCACACGTGTAAATACAAATCTT 57.044 32.000 22.90 0.00 38.04 2.40
2389 5994 8.373048 TCTCACACGTGTAAATACAAATCTTT 57.627 30.769 22.90 0.00 38.04 2.52
2390 5995 8.492748 TCTCACACGTGTAAATACAAATCTTTC 58.507 33.333 22.90 0.00 38.04 2.62
2391 5996 8.373048 TCACACGTGTAAATACAAATCTTTCT 57.627 30.769 22.90 0.00 38.04 2.52
2392 5997 8.832521 TCACACGTGTAAATACAAATCTTTCTT 58.167 29.630 22.90 0.00 38.04 2.52
2393 5998 9.103048 CACACGTGTAAATACAAATCTTTCTTC 57.897 33.333 22.90 0.00 38.04 2.87
2394 5999 8.007716 ACACGTGTAAATACAAATCTTTCTTCG 58.992 33.333 21.98 0.00 38.04 3.79
2395 6000 7.477422 CACGTGTAAATACAAATCTTTCTTCGG 59.523 37.037 7.58 0.00 38.04 4.30
2396 6001 7.385752 ACGTGTAAATACAAATCTTTCTTCGGA 59.614 33.333 0.00 0.00 38.04 4.55
2397 6002 7.686938 CGTGTAAATACAAATCTTTCTTCGGAC 59.313 37.037 0.00 0.00 38.04 4.79
2398 6003 8.718734 GTGTAAATACAAATCTTTCTTCGGACT 58.281 33.333 0.00 0.00 38.04 3.85
2399 6004 8.932791 TGTAAATACAAATCTTTCTTCGGACTC 58.067 33.333 0.00 0.00 32.40 3.36
2400 6005 6.648725 AATACAAATCTTTCTTCGGACTCG 57.351 37.500 0.00 0.00 37.82 4.18
2401 6006 3.991367 ACAAATCTTTCTTCGGACTCGT 58.009 40.909 0.00 0.00 37.69 4.18
2402 6007 5.130292 ACAAATCTTTCTTCGGACTCGTA 57.870 39.130 0.00 0.00 37.69 3.43
2403 6008 5.162075 ACAAATCTTTCTTCGGACTCGTAG 58.838 41.667 0.00 0.00 37.69 3.51
2404 6009 5.048224 ACAAATCTTTCTTCGGACTCGTAGA 60.048 40.000 0.00 0.00 40.21 2.59
2405 6010 5.640189 AATCTTTCTTCGGACTCGTAGAA 57.360 39.130 4.27 4.27 46.04 2.10
2406 6011 4.416505 TCTTTCTTCGGACTCGTAGAAC 57.583 45.455 7.21 0.00 46.86 3.01
2407 6012 3.817084 TCTTTCTTCGGACTCGTAGAACA 59.183 43.478 7.21 0.00 46.86 3.18
2408 6013 4.458295 TCTTTCTTCGGACTCGTAGAACAT 59.542 41.667 7.21 0.00 46.86 2.71
2409 6014 4.352600 TTCTTCGGACTCGTAGAACATC 57.647 45.455 4.27 0.00 44.04 3.06
2410 6015 3.607741 TCTTCGGACTCGTAGAACATCT 58.392 45.455 0.00 0.00 39.28 2.90
2411 6016 4.008330 TCTTCGGACTCGTAGAACATCTT 58.992 43.478 0.00 0.00 39.28 2.40
2412 6017 4.458295 TCTTCGGACTCGTAGAACATCTTT 59.542 41.667 0.00 0.00 39.28 2.52
2413 6018 4.778534 TCGGACTCGTAGAACATCTTTT 57.221 40.909 0.00 0.00 34.09 2.27
2414 6019 5.130292 TCGGACTCGTAGAACATCTTTTT 57.870 39.130 0.00 0.00 34.09 1.94
2436 6041 1.250328 TTGAAGGCGGACTCGTAGAA 58.750 50.000 0.00 0.00 38.89 2.10
2497 6102 2.413351 CCGTCGTCATCGGCTCAT 59.587 61.111 0.00 0.00 41.48 2.90
2498 6103 1.658717 CCGTCGTCATCGGCTCATC 60.659 63.158 0.00 0.00 41.48 2.92
2499 6104 2.006062 CGTCGTCATCGGCTCATCG 61.006 63.158 0.00 0.00 39.73 3.84
2500 6105 2.026157 TCGTCATCGGCTCATCGC 59.974 61.111 0.00 0.00 37.69 4.58
2510 6115 1.077429 GCTCATCGCCCCTTCCTTT 60.077 57.895 0.00 0.00 0.00 3.11
2516 6121 4.678743 GCCCCTTCCTTTGCCGGT 62.679 66.667 1.90 0.00 0.00 5.28
2537 6142 4.381079 GGTGCCAGACAAAACTTGTTGTAA 60.381 41.667 0.00 0.00 45.52 2.41
2542 6147 7.230510 TGCCAGACAAAACTTGTTGTAATAGAT 59.769 33.333 0.00 0.00 45.52 1.98
2567 6172 0.608640 AGAAGTGGTCGTGCTAAGGG 59.391 55.000 0.00 0.00 0.00 3.95
2574 6179 1.138266 GGTCGTGCTAAGGGCTCATAA 59.862 52.381 0.00 0.00 42.39 1.90
2575 6180 2.419574 GGTCGTGCTAAGGGCTCATAAA 60.420 50.000 0.00 0.00 42.39 1.40
2586 6191 0.804989 GCTCATAAAACCAGCGCACT 59.195 50.000 11.47 0.00 0.00 4.40
2597 6202 1.081892 CAGCGCACTAGAACAGCAAT 58.918 50.000 11.47 0.00 0.00 3.56
2638 6243 3.001330 GCGTAAATCAGAAGGATCCAACG 59.999 47.826 15.82 9.77 37.87 4.10
2668 6273 2.219445 CGTGAACGTATACTCGATCCGA 59.781 50.000 0.56 0.00 32.88 4.55
2676 6285 4.377738 CGTATACTCGATCCGAATTCCGAA 60.378 45.833 0.00 0.00 41.76 4.30
2678 6287 5.892160 ATACTCGATCCGAATTCCGAATA 57.108 39.130 0.00 0.00 41.76 1.75
2695 6304 4.332819 CCGAATAGATCCACCAAAGACAAC 59.667 45.833 0.00 0.00 0.00 3.32
2731 6340 3.471244 GAGATCCGCCGGAGACACG 62.471 68.421 13.12 0.00 34.05 4.49
2742 6351 4.363990 AGACACGCCTGCAGACGG 62.364 66.667 26.23 16.81 0.00 4.79
2761 6370 1.536331 GGCCTCCGAAGATACTAGACG 59.464 57.143 0.00 0.00 0.00 4.18
2764 6373 2.814919 CCTCCGAAGATACTAGACGCAT 59.185 50.000 0.00 0.00 0.00 4.73
2773 6382 1.781786 ACTAGACGCATCACCAGGAT 58.218 50.000 0.00 0.00 36.39 3.24
2795 6405 3.095347 GCTAGGCCGGGAGAACCTG 62.095 68.421 2.18 0.00 41.93 4.00
2836 6450 4.845580 CCGCCTCGCCTTGCTGAT 62.846 66.667 0.00 0.00 0.00 2.90
2840 6454 1.308069 GCCTCGCCTTGCTGATCAAA 61.308 55.000 0.00 0.00 33.65 2.69
2843 6457 0.516877 TCGCCTTGCTGATCAAAACG 59.483 50.000 0.00 0.00 35.56 3.60
2853 6467 3.119495 GCTGATCAAAACGCAAACCCTAT 60.119 43.478 0.00 0.00 0.00 2.57
2854 6468 4.095782 GCTGATCAAAACGCAAACCCTATA 59.904 41.667 0.00 0.00 0.00 1.31
2858 6472 5.968528 TCAAAACGCAAACCCTATAACAT 57.031 34.783 0.00 0.00 0.00 2.71
2868 6482 7.148306 CGCAAACCCTATAACATAACTCAAAGT 60.148 37.037 0.00 0.00 0.00 2.66
2906 6521 4.634703 TCCGCTGGCAAAAGCCGA 62.635 61.111 1.66 0.00 40.23 5.54
2920 6535 2.279451 CCGAGATCCATCGCGCAA 60.279 61.111 8.75 0.00 46.41 4.85
2932 6547 1.523711 CGCGCAACCATGACCCTAT 60.524 57.895 8.75 0.00 0.00 2.57
2933 6548 0.249699 CGCGCAACCATGACCCTATA 60.250 55.000 8.75 0.00 0.00 1.31
2939 6554 3.551846 CAACCATGACCCTATAACCACC 58.448 50.000 0.00 0.00 0.00 4.61
2956 6571 1.111116 ACCGAAGACGAGGTGAACCA 61.111 55.000 1.62 0.00 42.66 3.67
2962 6577 2.338620 CGAGGTGAACCAGCGACA 59.661 61.111 8.53 0.00 37.99 4.35
2963 6578 1.300620 CGAGGTGAACCAGCGACAA 60.301 57.895 8.53 0.00 37.99 3.18
2965 6580 1.557443 GAGGTGAACCAGCGACAACG 61.557 60.000 1.62 0.00 39.60 4.10
2979 6594 1.448540 CAACGCTGGTAGGAGGCAG 60.449 63.158 0.00 0.00 0.00 4.85
2981 6596 1.608717 AACGCTGGTAGGAGGCAGAG 61.609 60.000 0.00 0.00 0.00 3.35
2985 6600 0.827368 CTGGTAGGAGGCAGAGGAAC 59.173 60.000 0.00 0.00 0.00 3.62
2988 6603 0.325765 GTAGGAGGCAGAGGAACCCT 60.326 60.000 0.00 0.00 36.03 4.34
2989 6604 1.063114 GTAGGAGGCAGAGGAACCCTA 60.063 57.143 0.00 0.00 31.76 3.53
2992 6607 0.179234 GAGGCAGAGGAACCCTAAGC 59.821 60.000 0.00 0.00 31.76 3.09
2993 6608 0.252927 AGGCAGAGGAACCCTAAGCT 60.253 55.000 0.00 0.00 34.99 3.74
2994 6609 0.621082 GGCAGAGGAACCCTAAGCTT 59.379 55.000 3.48 3.48 34.99 3.74
2995 6610 1.004862 GGCAGAGGAACCCTAAGCTTT 59.995 52.381 3.20 0.00 34.99 3.51
2996 6611 2.555448 GGCAGAGGAACCCTAAGCTTTT 60.555 50.000 3.20 0.00 34.99 2.27
2997 6612 3.157881 GCAGAGGAACCCTAAGCTTTTT 58.842 45.455 3.20 0.00 31.76 1.94
3014 6629 4.129737 TTCGAGAGAAGGCGGCGG 62.130 66.667 9.78 0.00 46.92 6.13
3022 6637 4.569180 AAGGCGGCGGCTGCATAT 62.569 61.111 36.80 18.19 45.35 1.78
3025 6640 3.279116 GCGGCGGCTGCATATGAA 61.279 61.111 27.92 0.00 45.35 2.57
3026 6641 2.941333 CGGCGGCTGCATATGAAG 59.059 61.111 21.31 6.62 45.35 3.02
3027 6642 2.610694 CGGCGGCTGCATATGAAGG 61.611 63.158 21.31 0.00 45.35 3.46
3028 6643 1.227943 GGCGGCTGCATATGAAGGA 60.228 57.895 21.31 0.00 45.35 3.36
3029 6644 1.233285 GGCGGCTGCATATGAAGGAG 61.233 60.000 21.31 0.58 45.35 3.69
3030 6645 1.233285 GCGGCTGCATATGAAGGAGG 61.233 60.000 14.08 0.00 42.15 4.30
3031 6646 1.233285 CGGCTGCATATGAAGGAGGC 61.233 60.000 12.86 9.70 44.63 4.70
3032 6647 0.892814 GGCTGCATATGAAGGAGGCC 60.893 60.000 12.86 4.40 42.79 5.19
3033 6648 1.233285 GCTGCATATGAAGGAGGCCG 61.233 60.000 12.86 0.00 0.00 6.13
3034 6649 0.394192 CTGCATATGAAGGAGGCCGA 59.606 55.000 6.97 0.00 0.00 5.54
3035 6650 1.002888 CTGCATATGAAGGAGGCCGAT 59.997 52.381 6.97 0.00 0.00 4.18
3036 6651 1.421268 TGCATATGAAGGAGGCCGATT 59.579 47.619 6.97 0.00 0.00 3.34
3037 6652 2.158623 TGCATATGAAGGAGGCCGATTT 60.159 45.455 6.97 0.00 0.00 2.17
3038 6653 2.887152 GCATATGAAGGAGGCCGATTTT 59.113 45.455 6.97 0.00 0.00 1.82
3039 6654 3.319122 GCATATGAAGGAGGCCGATTTTT 59.681 43.478 6.97 0.00 0.00 1.94
3085 6700 9.793259 TCTAAAATGTTCAAGTGGTAAGAATCT 57.207 29.630 0.00 0.00 0.00 2.40
3092 6707 9.179909 TGTTCAAGTGGTAAGAATCTTTTTACA 57.820 29.630 0.00 0.00 32.68 2.41
3095 6710 9.567776 TCAAGTGGTAAGAATCTTTTTACATCA 57.432 29.630 0.00 0.00 32.68 3.07
3181 6796 6.670695 AAATAAGTCATGGCCAAAAGAAGT 57.329 33.333 10.96 2.51 0.00 3.01
3182 6797 5.904362 ATAAGTCATGGCCAAAAGAAGTC 57.096 39.130 10.96 0.00 0.00 3.01
3183 6798 3.228188 AGTCATGGCCAAAAGAAGTCA 57.772 42.857 10.96 0.00 0.00 3.41
3184 6799 3.771216 AGTCATGGCCAAAAGAAGTCAT 58.229 40.909 10.96 0.00 0.00 3.06
3185 6800 3.508793 AGTCATGGCCAAAAGAAGTCATG 59.491 43.478 10.96 0.00 34.89 3.07
3186 6801 2.827322 TCATGGCCAAAAGAAGTCATGG 59.173 45.455 10.96 0.00 34.50 3.66
3192 6807 4.326504 CCAAAAGAAGTCATGGCTTTGT 57.673 40.909 14.94 1.78 32.63 2.83
3193 6808 4.696455 CCAAAAGAAGTCATGGCTTTGTT 58.304 39.130 14.94 8.32 32.63 2.83
3194 6809 5.841810 CCAAAAGAAGTCATGGCTTTGTTA 58.158 37.500 14.94 0.00 32.63 2.41
3195 6810 6.458210 CCAAAAGAAGTCATGGCTTTGTTAT 58.542 36.000 14.94 0.00 32.63 1.89
3196 6811 6.587608 CCAAAAGAAGTCATGGCTTTGTTATC 59.412 38.462 14.94 0.00 32.63 1.75
3197 6812 5.904362 AAGAAGTCATGGCTTTGTTATCC 57.096 39.130 14.94 0.00 0.00 2.59
3198 6813 5.184892 AGAAGTCATGGCTTTGTTATCCT 57.815 39.130 14.94 1.49 0.00 3.24
3199 6814 5.574188 AGAAGTCATGGCTTTGTTATCCTT 58.426 37.500 14.94 0.00 0.00 3.36
3200 6815 6.012745 AGAAGTCATGGCTTTGTTATCCTTT 58.987 36.000 14.94 0.00 0.00 3.11
3201 6816 7.175104 AGAAGTCATGGCTTTGTTATCCTTTA 58.825 34.615 14.94 0.00 0.00 1.85
3202 6817 7.836183 AGAAGTCATGGCTTTGTTATCCTTTAT 59.164 33.333 14.94 0.00 0.00 1.40
3203 6818 7.961326 AGTCATGGCTTTGTTATCCTTTATT 57.039 32.000 0.00 0.00 0.00 1.40
3204 6819 8.366359 AGTCATGGCTTTGTTATCCTTTATTT 57.634 30.769 0.00 0.00 0.00 1.40
3205 6820 8.253113 AGTCATGGCTTTGTTATCCTTTATTTG 58.747 33.333 0.00 0.00 0.00 2.32
3206 6821 7.010460 GTCATGGCTTTGTTATCCTTTATTTGC 59.990 37.037 0.00 0.00 0.00 3.68
3207 6822 6.352016 TGGCTTTGTTATCCTTTATTTGCA 57.648 33.333 0.00 0.00 0.00 4.08
3208 6823 6.397272 TGGCTTTGTTATCCTTTATTTGCAG 58.603 36.000 0.00 0.00 0.00 4.41
3209 6824 6.210385 TGGCTTTGTTATCCTTTATTTGCAGA 59.790 34.615 0.00 0.00 0.00 4.26
3210 6825 7.096551 GGCTTTGTTATCCTTTATTTGCAGAA 58.903 34.615 0.00 0.00 0.00 3.02
3211 6826 7.765819 GGCTTTGTTATCCTTTATTTGCAGAAT 59.234 33.333 0.00 0.00 0.00 2.40
3212 6827 9.801873 GCTTTGTTATCCTTTATTTGCAGAATA 57.198 29.630 0.00 0.00 0.00 1.75
3226 6841 8.761575 ATTTGCAGAATATGTAACAAACCTTG 57.238 30.769 0.00 0.00 32.79 3.61
3228 6843 7.987750 TGCAGAATATGTAACAAACCTTGTA 57.012 32.000 0.00 0.00 44.59 2.41
3229 6844 8.574251 TGCAGAATATGTAACAAACCTTGTAT 57.426 30.769 0.00 0.00 44.59 2.29
3230 6845 9.019656 TGCAGAATATGTAACAAACCTTGTATT 57.980 29.630 0.00 0.00 44.59 1.89
3231 6846 9.855021 GCAGAATATGTAACAAACCTTGTATTT 57.145 29.630 0.00 0.00 44.59 1.40
3251 6866 9.554395 TGTATTTCAAGTAGTGATTCAAGTTGA 57.446 29.630 0.08 0.08 35.70 3.18
3254 6869 8.731275 TTTCAAGTAGTGATTCAAGTTGAAGA 57.269 30.769 22.03 9.74 41.24 2.87
3255 6870 8.908786 TTCAAGTAGTGATTCAAGTTGAAGAT 57.091 30.769 22.03 7.86 40.05 2.40
3256 6871 8.908786 TCAAGTAGTGATTCAAGTTGAAGATT 57.091 30.769 22.03 7.14 40.05 2.40
3257 6872 8.993121 TCAAGTAGTGATTCAAGTTGAAGATTC 58.007 33.333 22.03 15.47 40.05 2.52
3258 6873 8.777413 CAAGTAGTGATTCAAGTTGAAGATTCA 58.223 33.333 22.03 17.60 40.05 2.57
3259 6874 9.512588 AAGTAGTGATTCAAGTTGAAGATTCAT 57.487 29.630 22.03 13.06 40.05 2.57
3260 6875 8.944029 AGTAGTGATTCAAGTTGAAGATTCATG 58.056 33.333 22.03 0.00 40.05 3.07
3261 6876 7.756395 AGTGATTCAAGTTGAAGATTCATGT 57.244 32.000 22.03 10.65 40.05 3.21
3262 6877 8.174733 AGTGATTCAAGTTGAAGATTCATGTT 57.825 30.769 22.03 9.39 40.05 2.71
3263 6878 9.288576 AGTGATTCAAGTTGAAGATTCATGTTA 57.711 29.630 22.03 0.00 40.05 2.41
3264 6879 9.334693 GTGATTCAAGTTGAAGATTCATGTTAC 57.665 33.333 22.03 7.41 40.05 2.50
3265 6880 8.514594 TGATTCAAGTTGAAGATTCATGTTACC 58.485 33.333 22.03 0.00 40.05 2.85
3266 6881 8.641498 ATTCAAGTTGAAGATTCATGTTACCT 57.359 30.769 22.03 0.00 40.05 3.08
3267 6882 9.739276 ATTCAAGTTGAAGATTCATGTTACCTA 57.261 29.630 22.03 0.00 40.05 3.08
3268 6883 9.739276 TTCAAGTTGAAGATTCATGTTACCTAT 57.261 29.630 14.35 0.00 37.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 3.986572 CACGATCCTGTATGCTGATTCTC 59.013 47.826 0.00 0.00 0.00 2.87
9 10 1.410517 AGTCCACGATCCTGTATGCTG 59.589 52.381 0.00 0.00 0.00 4.41
10 11 1.781786 AGTCCACGATCCTGTATGCT 58.218 50.000 0.00 0.00 0.00 3.79
41 42 5.801350 TCAATTTGCTAGTCATCCGAAAG 57.199 39.130 0.00 0.00 0.00 2.62
58 59 4.436113 ACAAAAACCTGGGCAATCAATT 57.564 36.364 0.00 0.00 0.00 2.32
66 67 5.586643 TCAAAAACAATACAAAAACCTGGGC 59.413 36.000 0.00 0.00 0.00 5.36
80 81 7.202001 CCTTCTAAAGGGGTCTTCAAAAACAAT 60.202 37.037 0.00 0.00 45.27 2.71
96 97 4.445019 GGCTAATCCACCTCCTTCTAAAGG 60.445 50.000 0.00 0.00 41.70 3.11
153 154 4.584743 ACTCCATGCACTAATACGATCTCA 59.415 41.667 0.00 0.00 0.00 3.27
159 160 7.534085 TCTTTTTACTCCATGCACTAATACG 57.466 36.000 0.00 0.00 0.00 3.06
187 188 4.010349 AGGAATGGACGGAAATTGACTTC 58.990 43.478 0.00 0.00 0.00 3.01
206 207 1.078324 ACTCCCTCCGTTCCTAAAGGA 59.922 52.381 0.00 0.00 43.73 3.36
207 208 1.207329 CACTCCCTCCGTTCCTAAAGG 59.793 57.143 0.00 0.00 0.00 3.11
208 209 1.900486 ACACTCCCTCCGTTCCTAAAG 59.100 52.381 0.00 0.00 0.00 1.85
209 210 2.019807 ACACTCCCTCCGTTCCTAAA 57.980 50.000 0.00 0.00 0.00 1.85
210 211 2.019807 AACACTCCCTCCGTTCCTAA 57.980 50.000 0.00 0.00 0.00 2.69
211 212 2.019807 AAACACTCCCTCCGTTCCTA 57.980 50.000 0.00 0.00 0.00 2.94
212 213 1.137697 AAAACACTCCCTCCGTTCCT 58.862 50.000 0.00 0.00 0.00 3.36
213 214 1.977056 AAAAACACTCCCTCCGTTCC 58.023 50.000 0.00 0.00 0.00 3.62
233 234 6.582636 AGTTTCTATGCGATCACCAATTCTA 58.417 36.000 0.00 0.00 0.00 2.10
270 271 6.760298 TGTTGATTTGCTATTGTTGCAGAAAA 59.240 30.769 0.00 0.00 41.71 2.29
276 277 6.094719 TCTCATGTTGATTTGCTATTGTTGC 58.905 36.000 0.00 0.00 0.00 4.17
287 288 9.820725 TTGTTGATCTTTTTCTCATGTTGATTT 57.179 25.926 0.00 0.00 0.00 2.17
291 292 9.090692 AGTTTTGTTGATCTTTTTCTCATGTTG 57.909 29.630 0.00 0.00 0.00 3.33
308 309 4.819630 TCTACAGCCACCTAAGTTTTGTTG 59.180 41.667 0.00 0.00 0.00 3.33
335 336 3.247006 TGCCGGTTTAGTCTTCAGATC 57.753 47.619 1.90 0.00 0.00 2.75
361 362 0.248458 CACAACCCAACACGTCTTGC 60.248 55.000 0.00 0.00 0.00 4.01
401 402 4.529377 ACACCTTGAAAAATCAGGCATCAT 59.471 37.500 0.00 0.00 0.00 2.45
419 420 2.722094 TCTGTTGAGTTTTGCACACCT 58.278 42.857 0.00 0.00 0.00 4.00
432 433 4.524714 TGTCTGGTTTTGGTTTTCTGTTGA 59.475 37.500 0.00 0.00 0.00 3.18
433 434 4.815269 TGTCTGGTTTTGGTTTTCTGTTG 58.185 39.130 0.00 0.00 0.00 3.33
525 530 4.735662 TCTAACCGACAAAACCGAAATG 57.264 40.909 0.00 0.00 0.00 2.32
526 531 5.506151 GGTTTCTAACCGACAAAACCGAAAT 60.506 40.000 0.00 0.00 42.62 2.17
598 607 2.911102 GCAGCTCATTACGCTTTTGAAC 59.089 45.455 0.00 0.00 35.07 3.18
606 615 4.795268 TGTACTATAGCAGCTCATTACGC 58.205 43.478 0.00 0.00 0.00 4.42
614 623 7.229106 GGTAGAAAGTACTGTACTATAGCAGCT 59.771 40.741 19.97 0.00 38.26 4.24
625 634 7.580109 GCACTAAATGGGGTAGAAAGTACTGTA 60.580 40.741 0.00 0.00 0.00 2.74
639 648 7.502226 TCATATAAACTGAAGCACTAAATGGGG 59.498 37.037 0.00 0.00 0.00 4.96
655 664 9.640963 GCCGTCAGACTAATAATCATATAAACT 57.359 33.333 0.00 0.00 0.00 2.66
662 671 7.039011 TGGATAAGCCGTCAGACTAATAATCAT 60.039 37.037 0.00 0.00 40.66 2.45
665 674 6.665992 TGGATAAGCCGTCAGACTAATAAT 57.334 37.500 0.00 0.00 40.66 1.28
666 675 6.278363 GTTGGATAAGCCGTCAGACTAATAA 58.722 40.000 0.00 0.00 40.66 1.40
667 676 5.506815 CGTTGGATAAGCCGTCAGACTAATA 60.507 44.000 0.00 0.00 40.66 0.98
747 757 3.462483 AACACATCACTCCACGTGTAA 57.538 42.857 15.65 0.89 41.56 2.41
756 766 5.116074 CGAATTTTGAGCAAACACATCACTC 59.884 40.000 0.00 0.00 0.00 3.51
769 779 4.143263 CCAAAGTTGATGCGAATTTTGAGC 60.143 41.667 10.55 0.00 35.59 4.26
778 788 5.163602 ACAAAACTAACCAAAGTTGATGCGA 60.164 36.000 0.00 0.00 39.62 5.10
780 790 6.039616 TGACAAAACTAACCAAAGTTGATGC 58.960 36.000 0.00 0.00 39.62 3.91
782 792 9.744468 GTAATGACAAAACTAACCAAAGTTGAT 57.256 29.630 0.00 0.00 39.62 2.57
792 802 6.727215 TGGTTTCGGTAATGACAAAACTAAC 58.273 36.000 9.23 0.00 35.07 2.34
845 855 8.623903 ACGGTTTTATACATAGATACAGTTCGA 58.376 33.333 0.00 0.00 0.00 3.71
909 946 2.091885 TCAGGGTCTGCCTTCAGTTTTT 60.092 45.455 0.00 0.00 41.10 1.94
919 956 1.815003 CAAAATCAGTCAGGGTCTGCC 59.185 52.381 0.00 0.00 33.48 4.85
956 993 1.154488 CAAACATCGCAACCGGTCG 60.154 57.895 8.04 8.80 34.56 4.79
971 1210 7.862512 AAAATGGAATTCTTGTTTGCTCAAA 57.137 28.000 5.23 0.00 33.67 2.69
986 1225 6.303903 AGCTAGGCATTTCAAAAATGGAAT 57.696 33.333 12.82 0.00 0.00 3.01
996 1236 1.921982 TTGGCAAGCTAGGCATTTCA 58.078 45.000 11.85 0.00 44.02 2.69
1155 1397 0.542232 AGTAGCTCGTGGTGGTTCCT 60.542 55.000 0.00 0.00 37.07 3.36
1345 1587 5.500645 AGAGCATTTGATGTGATGTGATG 57.499 39.130 0.00 0.00 0.00 3.07
1400 1647 1.244019 GCCCACCGAAGCATGAAACT 61.244 55.000 0.00 0.00 0.00 2.66
1482 1800 0.680280 AGGAGCATGTCGTAGTCGGT 60.680 55.000 0.00 0.00 37.69 4.69
2223 5828 0.460459 GGGTTAGAAGCGAGACTGGC 60.460 60.000 0.41 0.41 0.00 4.85
2296 5901 4.792068 ACCGATCCAATACCATTCAACAT 58.208 39.130 0.00 0.00 0.00 2.71
2297 5902 4.229304 ACCGATCCAATACCATTCAACA 57.771 40.909 0.00 0.00 0.00 3.33
2308 5913 5.710567 TGAGAGTATTCGATACCGATCCAAT 59.289 40.000 0.00 0.00 45.10 3.16
2309 5914 5.067954 TGAGAGTATTCGATACCGATCCAA 58.932 41.667 0.00 0.00 45.10 3.53
2315 5920 5.676532 AGAGTTGAGAGTATTCGATACCG 57.323 43.478 0.00 0.00 36.40 4.02
2323 5928 6.821031 ACGAGTACAAGAGTTGAGAGTATT 57.179 37.500 0.00 0.00 0.00 1.89
2326 5931 4.319622 CGAACGAGTACAAGAGTTGAGAGT 60.320 45.833 0.00 0.00 0.00 3.24
2327 5932 4.152526 CGAACGAGTACAAGAGTTGAGAG 58.847 47.826 0.00 0.00 0.00 3.20
2328 5933 3.562973 ACGAACGAGTACAAGAGTTGAGA 59.437 43.478 0.14 0.00 0.00 3.27
2329 5934 3.664486 CACGAACGAGTACAAGAGTTGAG 59.336 47.826 0.14 0.00 0.00 3.02
2330 5935 3.549423 CCACGAACGAGTACAAGAGTTGA 60.549 47.826 0.14 0.00 0.00 3.18
2331 5936 2.724690 CCACGAACGAGTACAAGAGTTG 59.275 50.000 0.14 0.00 0.00 3.16
2332 5937 2.360165 ACCACGAACGAGTACAAGAGTT 59.640 45.455 0.14 0.00 0.00 3.01
2333 5938 1.952296 ACCACGAACGAGTACAAGAGT 59.048 47.619 0.14 0.00 0.00 3.24
2334 5939 2.701073 ACCACGAACGAGTACAAGAG 57.299 50.000 0.14 0.00 0.00 2.85
2335 5940 4.566545 TTAACCACGAACGAGTACAAGA 57.433 40.909 0.14 0.00 0.00 3.02
2336 5941 5.834239 ATTTAACCACGAACGAGTACAAG 57.166 39.130 0.14 0.00 0.00 3.16
2337 5942 6.446318 ACTATTTAACCACGAACGAGTACAA 58.554 36.000 0.14 0.00 0.00 2.41
2338 5943 6.012658 ACTATTTAACCACGAACGAGTACA 57.987 37.500 0.14 0.00 0.00 2.90
2339 5944 8.620533 ATTACTATTTAACCACGAACGAGTAC 57.379 34.615 0.14 0.00 0.00 2.73
2340 5945 8.677300 AGATTACTATTTAACCACGAACGAGTA 58.323 33.333 0.14 0.00 0.00 2.59
2341 5946 7.542025 AGATTACTATTTAACCACGAACGAGT 58.458 34.615 0.14 0.00 0.00 4.18
2342 5947 7.699391 TGAGATTACTATTTAACCACGAACGAG 59.301 37.037 0.14 0.00 0.00 4.18
2343 5948 7.485913 GTGAGATTACTATTTAACCACGAACGA 59.514 37.037 0.14 0.00 0.00 3.85
2344 5949 7.274033 TGTGAGATTACTATTTAACCACGAACG 59.726 37.037 0.00 0.00 0.00 3.95
2345 5950 8.378421 GTGTGAGATTACTATTTAACCACGAAC 58.622 37.037 0.00 0.00 0.00 3.95
2346 5951 7.274033 CGTGTGAGATTACTATTTAACCACGAA 59.726 37.037 0.00 0.00 0.00 3.85
2347 5952 6.748658 CGTGTGAGATTACTATTTAACCACGA 59.251 38.462 0.00 0.00 0.00 4.35
2348 5953 6.529125 ACGTGTGAGATTACTATTTAACCACG 59.471 38.462 0.00 0.00 35.36 4.94
2349 5954 7.330208 ACACGTGTGAGATTACTATTTAACCAC 59.670 37.037 22.71 0.00 0.00 4.16
2350 5955 7.380536 ACACGTGTGAGATTACTATTTAACCA 58.619 34.615 22.71 0.00 0.00 3.67
2351 5956 7.823149 ACACGTGTGAGATTACTATTTAACC 57.177 36.000 22.71 0.00 0.00 2.85
2358 5963 9.911138 TTTGTATTTACACGTGTGAGATTACTA 57.089 29.630 30.83 17.20 35.64 1.82
2359 5964 8.821147 TTTGTATTTACACGTGTGAGATTACT 57.179 30.769 30.83 9.08 35.64 2.24
2360 5965 9.685005 GATTTGTATTTACACGTGTGAGATTAC 57.315 33.333 30.83 21.88 35.64 1.89
2361 5966 9.647797 AGATTTGTATTTACACGTGTGAGATTA 57.352 29.630 30.83 12.56 35.64 1.75
2362 5967 8.547967 AGATTTGTATTTACACGTGTGAGATT 57.452 30.769 30.83 13.51 35.64 2.40
2363 5968 8.547967 AAGATTTGTATTTACACGTGTGAGAT 57.452 30.769 30.83 21.34 35.64 2.75
2364 5969 7.956420 AAGATTTGTATTTACACGTGTGAGA 57.044 32.000 30.83 16.18 35.64 3.27
2365 5970 8.495949 AGAAAGATTTGTATTTACACGTGTGAG 58.504 33.333 30.83 0.00 35.64 3.51
2366 5971 8.373048 AGAAAGATTTGTATTTACACGTGTGA 57.627 30.769 30.83 20.85 35.64 3.58
2367 5972 9.103048 GAAGAAAGATTTGTATTTACACGTGTG 57.897 33.333 30.83 0.53 35.64 3.82
2368 5973 8.007716 CGAAGAAAGATTTGTATTTACACGTGT 58.992 33.333 26.52 26.52 35.64 4.49
2369 5974 7.477422 CCGAAGAAAGATTTGTATTTACACGTG 59.523 37.037 15.48 15.48 35.64 4.49
2370 5975 7.385752 TCCGAAGAAAGATTTGTATTTACACGT 59.614 33.333 0.00 0.00 35.64 4.49
2371 5976 7.686938 GTCCGAAGAAAGATTTGTATTTACACG 59.313 37.037 0.00 0.00 35.64 4.49
2372 5977 8.718734 AGTCCGAAGAAAGATTTGTATTTACAC 58.281 33.333 0.00 0.00 35.64 2.90
2373 5978 8.842358 AGTCCGAAGAAAGATTTGTATTTACA 57.158 30.769 0.00 0.00 0.00 2.41
2374 5979 8.108782 CGAGTCCGAAGAAAGATTTGTATTTAC 58.891 37.037 0.00 0.00 38.22 2.01
2375 5980 7.816031 ACGAGTCCGAAGAAAGATTTGTATTTA 59.184 33.333 0.00 0.00 39.50 1.40
2376 5981 6.649557 ACGAGTCCGAAGAAAGATTTGTATTT 59.350 34.615 0.00 0.00 39.50 1.40
2377 5982 6.164176 ACGAGTCCGAAGAAAGATTTGTATT 58.836 36.000 0.00 0.00 39.50 1.89
2378 5983 5.721232 ACGAGTCCGAAGAAAGATTTGTAT 58.279 37.500 0.00 0.00 39.50 2.29
2379 5984 5.130292 ACGAGTCCGAAGAAAGATTTGTA 57.870 39.130 0.00 0.00 39.50 2.41
2380 5985 3.991367 ACGAGTCCGAAGAAAGATTTGT 58.009 40.909 0.00 0.00 39.50 2.83
2381 5986 5.399858 TCTACGAGTCCGAAGAAAGATTTG 58.600 41.667 0.00 0.00 39.50 2.32
2382 5987 5.640189 TCTACGAGTCCGAAGAAAGATTT 57.360 39.130 0.00 0.00 39.50 2.17
2383 5988 5.048224 TGTTCTACGAGTCCGAAGAAAGATT 60.048 40.000 0.00 0.00 39.50 2.40
2384 5989 4.458295 TGTTCTACGAGTCCGAAGAAAGAT 59.542 41.667 0.00 0.00 39.50 2.40
2385 5990 3.817084 TGTTCTACGAGTCCGAAGAAAGA 59.183 43.478 0.00 0.00 39.50 2.52
2386 5991 4.156664 TGTTCTACGAGTCCGAAGAAAG 57.843 45.455 0.00 0.00 39.50 2.62
2387 5992 4.458295 AGATGTTCTACGAGTCCGAAGAAA 59.542 41.667 0.00 0.00 39.50 2.52
2388 5993 4.008330 AGATGTTCTACGAGTCCGAAGAA 58.992 43.478 0.00 0.00 39.50 2.52
2389 5994 3.607741 AGATGTTCTACGAGTCCGAAGA 58.392 45.455 0.00 0.00 39.50 2.87
2390 5995 4.358494 AAGATGTTCTACGAGTCCGAAG 57.642 45.455 0.00 0.00 39.50 3.79
2391 5996 4.778534 AAAGATGTTCTACGAGTCCGAA 57.221 40.909 0.00 0.00 39.50 4.30
2392 5997 4.778534 AAAAGATGTTCTACGAGTCCGA 57.221 40.909 0.00 0.00 39.50 4.55
2414 6019 2.036217 TCTACGAGTCCGCCTTCAAAAA 59.964 45.455 0.00 0.00 39.95 1.94
2415 6020 1.614903 TCTACGAGTCCGCCTTCAAAA 59.385 47.619 0.00 0.00 39.95 2.44
2416 6021 1.250328 TCTACGAGTCCGCCTTCAAA 58.750 50.000 0.00 0.00 39.95 2.69
2417 6022 1.068055 GTTCTACGAGTCCGCCTTCAA 60.068 52.381 0.00 0.00 39.95 2.69
2418 6023 0.524862 GTTCTACGAGTCCGCCTTCA 59.475 55.000 0.00 0.00 39.95 3.02
2419 6024 0.524862 TGTTCTACGAGTCCGCCTTC 59.475 55.000 0.00 0.00 39.95 3.46
2420 6025 1.134560 GATGTTCTACGAGTCCGCCTT 59.865 52.381 0.00 0.00 39.95 4.35
2421 6026 0.739561 GATGTTCTACGAGTCCGCCT 59.260 55.000 0.00 0.00 39.95 5.52
2422 6027 0.739561 AGATGTTCTACGAGTCCGCC 59.260 55.000 0.00 0.00 39.95 6.13
2423 6028 2.602694 GCTAGATGTTCTACGAGTCCGC 60.603 54.545 0.00 0.00 39.95 5.54
2424 6029 2.348685 CGCTAGATGTTCTACGAGTCCG 60.349 54.545 0.00 0.00 42.50 4.79
2425 6030 2.871022 TCGCTAGATGTTCTACGAGTCC 59.129 50.000 0.00 0.00 32.17 3.85
2426 6031 4.459606 CATCGCTAGATGTTCTACGAGTC 58.540 47.826 0.00 0.00 46.88 3.36
2427 6032 4.475763 CATCGCTAGATGTTCTACGAGT 57.524 45.455 0.00 0.00 46.88 4.18
2483 6088 2.026157 GCGATGAGCCGATGACGA 59.974 61.111 0.00 0.00 40.81 4.20
2493 6098 1.379642 GCAAAGGAAGGGGCGATGAG 61.380 60.000 0.00 0.00 0.00 2.90
2494 6099 1.378514 GCAAAGGAAGGGGCGATGA 60.379 57.895 0.00 0.00 0.00 2.92
2495 6100 2.418083 GGCAAAGGAAGGGGCGATG 61.418 63.158 0.00 0.00 0.00 3.84
2496 6101 2.043953 GGCAAAGGAAGGGGCGAT 60.044 61.111 0.00 0.00 0.00 4.58
2499 6104 4.678743 ACCGGCAAAGGAAGGGGC 62.679 66.667 0.00 0.00 34.73 5.80
2500 6105 2.676471 CACCGGCAAAGGAAGGGG 60.676 66.667 0.00 0.00 34.73 4.79
2504 6109 2.597217 CTGGCACCGGCAAAGGAA 60.597 61.111 0.00 0.00 43.71 3.36
2508 6113 1.323271 TTTTGTCTGGCACCGGCAAA 61.323 50.000 0.00 2.75 43.71 3.68
2510 6115 2.124109 TTTTGTCTGGCACCGGCA 60.124 55.556 0.00 0.00 43.71 5.69
2516 6121 5.590530 ATTACAACAAGTTTTGTCTGGCA 57.409 34.783 6.68 0.00 44.59 4.92
2537 6142 6.321690 AGCACGACCACTTCTTAACTATCTAT 59.678 38.462 0.00 0.00 0.00 1.98
2542 6147 5.336213 CCTTAGCACGACCACTTCTTAACTA 60.336 44.000 0.00 0.00 0.00 2.24
2547 6152 1.002087 CCCTTAGCACGACCACTTCTT 59.998 52.381 0.00 0.00 0.00 2.52
2548 6153 0.608640 CCCTTAGCACGACCACTTCT 59.391 55.000 0.00 0.00 0.00 2.85
2567 6172 0.804989 AGTGCGCTGGTTTTATGAGC 59.195 50.000 9.73 0.00 0.00 4.26
2574 6179 1.512926 CTGTTCTAGTGCGCTGGTTT 58.487 50.000 10.80 0.00 0.00 3.27
2575 6180 0.951040 GCTGTTCTAGTGCGCTGGTT 60.951 55.000 10.80 0.00 0.00 3.67
2614 6219 2.429250 TGGATCCTTCTGATTTACGCGA 59.571 45.455 15.93 0.00 32.41 5.87
2615 6220 2.821546 TGGATCCTTCTGATTTACGCG 58.178 47.619 14.23 3.53 32.41 6.01
2621 6226 3.981071 TCACGTTGGATCCTTCTGATT 57.019 42.857 14.23 0.00 32.41 2.57
2648 6253 3.867055 TCGGATCGAGTATACGTTCAC 57.133 47.619 0.00 0.00 42.94 3.18
2654 6259 4.675190 TCGGAATTCGGATCGAGTATAC 57.325 45.455 11.36 0.00 37.14 1.47
2657 6262 4.999311 TCTATTCGGAATTCGGATCGAGTA 59.001 41.667 15.56 10.55 38.25 2.59
2660 6265 4.142447 GGATCTATTCGGAATTCGGATCGA 60.142 45.833 15.56 8.30 38.25 3.59
2661 6266 4.106197 GGATCTATTCGGAATTCGGATCG 58.894 47.826 15.56 6.07 38.25 3.69
2662 6267 4.865365 GTGGATCTATTCGGAATTCGGATC 59.135 45.833 15.56 20.31 38.25 3.36
2663 6268 4.322801 GGTGGATCTATTCGGAATTCGGAT 60.323 45.833 15.56 10.10 40.73 4.18
2664 6269 3.006537 GGTGGATCTATTCGGAATTCGGA 59.993 47.826 11.36 11.36 39.77 4.55
2665 6270 3.244078 TGGTGGATCTATTCGGAATTCGG 60.244 47.826 8.76 6.67 39.77 4.30
2666 6271 3.990092 TGGTGGATCTATTCGGAATTCG 58.010 45.455 8.76 1.31 40.90 3.34
2668 6273 5.823045 GTCTTTGGTGGATCTATTCGGAATT 59.177 40.000 8.76 0.00 0.00 2.17
2676 6285 4.567747 GGTGGTTGTCTTTGGTGGATCTAT 60.568 45.833 0.00 0.00 0.00 1.98
2678 6287 2.489073 GGTGGTTGTCTTTGGTGGATCT 60.489 50.000 0.00 0.00 0.00 2.75
2695 6304 2.511600 GCAGGATTCGGTCGGTGG 60.512 66.667 0.00 0.00 0.00 4.61
2742 6351 1.069091 GCGTCTAGTATCTTCGGAGGC 60.069 57.143 0.00 0.00 0.00 4.70
2750 6359 2.887783 CCTGGTGATGCGTCTAGTATCT 59.112 50.000 7.58 0.00 41.70 1.98
2761 6370 1.277557 CTAGCCCTATCCTGGTGATGC 59.722 57.143 0.00 0.00 34.76 3.91
2764 6373 0.471971 GCCTAGCCCTATCCTGGTGA 60.472 60.000 0.00 0.00 0.00 4.02
2784 6394 2.246719 GATGGAATCAGGTTCTCCCG 57.753 55.000 0.00 0.00 44.70 5.14
2795 6405 2.753296 CGGCTCTCTGAAGATGGAATC 58.247 52.381 0.00 0.00 46.04 2.52
2831 6445 1.000274 AGGGTTTGCGTTTTGATCAGC 60.000 47.619 0.00 0.00 0.00 4.26
2836 6450 5.968528 ATGTTATAGGGTTTGCGTTTTGA 57.031 34.783 0.00 0.00 0.00 2.69
2840 6454 6.174760 TGAGTTATGTTATAGGGTTTGCGTT 58.825 36.000 0.00 0.00 0.00 4.84
2843 6457 8.051901 ACTTTGAGTTATGTTATAGGGTTTGC 57.948 34.615 0.00 0.00 0.00 3.68
2868 6482 6.485648 GCGGAGGGCTTTCTTTTTAGATATTA 59.514 38.462 0.00 0.00 39.11 0.98
2870 6484 4.822350 GCGGAGGGCTTTCTTTTTAGATAT 59.178 41.667 0.00 0.00 39.11 1.63
2906 6521 1.146930 ATGGTTGCGCGATGGATCT 59.853 52.632 12.10 0.00 0.00 2.75
2920 6535 1.766496 CGGTGGTTATAGGGTCATGGT 59.234 52.381 0.00 0.00 0.00 3.55
2932 6547 0.599558 CACCTCGTCTTCGGTGGTTA 59.400 55.000 0.00 0.00 45.39 2.85
2933 6548 1.366366 CACCTCGTCTTCGGTGGTT 59.634 57.895 0.00 0.00 45.39 3.67
2939 6554 1.009389 GCTGGTTCACCTCGTCTTCG 61.009 60.000 0.00 0.00 36.82 3.79
2962 6577 1.608717 CTCTGCCTCCTACCAGCGTT 61.609 60.000 0.00 0.00 0.00 4.84
2963 6578 2.037367 TCTGCCTCCTACCAGCGT 59.963 61.111 0.00 0.00 0.00 5.07
2965 6580 0.978146 TTCCTCTGCCTCCTACCAGC 60.978 60.000 0.00 0.00 0.00 4.85
2967 6582 0.617820 GGTTCCTCTGCCTCCTACCA 60.618 60.000 0.00 0.00 0.00 3.25
2970 6585 1.315903 TAGGGTTCCTCTGCCTCCTA 58.684 55.000 0.00 0.00 34.61 2.94
2971 6586 0.417841 TTAGGGTTCCTCTGCCTCCT 59.582 55.000 0.00 0.00 34.61 3.69
2994 6609 1.289109 CGCCGCCTTCTCTCGAAAAA 61.289 55.000 0.00 0.00 0.00 1.94
2995 6610 1.736645 CGCCGCCTTCTCTCGAAAA 60.737 57.895 0.00 0.00 0.00 2.29
2996 6611 2.126071 CGCCGCCTTCTCTCGAAA 60.126 61.111 0.00 0.00 0.00 3.46
2997 6612 4.129737 CCGCCGCCTTCTCTCGAA 62.130 66.667 0.00 0.00 0.00 3.71
3005 6620 4.569180 ATATGCAGCCGCCGCCTT 62.569 61.111 0.00 0.00 37.32 4.35
3008 6623 3.245948 CTTCATATGCAGCCGCCGC 62.246 63.158 0.00 0.00 37.32 6.53
3009 6624 2.610694 CCTTCATATGCAGCCGCCG 61.611 63.158 0.00 0.00 37.32 6.46
3010 6625 1.227943 TCCTTCATATGCAGCCGCC 60.228 57.895 0.00 0.00 37.32 6.13
3011 6626 1.233285 CCTCCTTCATATGCAGCCGC 61.233 60.000 0.00 0.00 39.24 6.53
3012 6627 1.233285 GCCTCCTTCATATGCAGCCG 61.233 60.000 0.00 0.00 0.00 5.52
3013 6628 0.892814 GGCCTCCTTCATATGCAGCC 60.893 60.000 0.00 0.20 0.00 4.85
3014 6629 1.233285 CGGCCTCCTTCATATGCAGC 61.233 60.000 0.00 0.00 0.00 5.25
3015 6630 0.394192 TCGGCCTCCTTCATATGCAG 59.606 55.000 0.00 0.00 0.00 4.41
3016 6631 1.059098 ATCGGCCTCCTTCATATGCA 58.941 50.000 0.00 0.00 0.00 3.96
3017 6632 2.191128 AATCGGCCTCCTTCATATGC 57.809 50.000 0.00 0.00 0.00 3.14
3059 6674 9.793259 AGATTCTTACCACTTGAACATTTTAGA 57.207 29.630 0.00 0.00 0.00 2.10
3066 6681 9.179909 TGTAAAAAGATTCTTACCACTTGAACA 57.820 29.630 0.00 0.00 0.00 3.18
3069 6684 9.567776 TGATGTAAAAAGATTCTTACCACTTGA 57.432 29.630 0.00 0.00 0.00 3.02
3155 6770 8.815912 ACTTCTTTTGGCCATGACTTATTTTAT 58.184 29.630 6.09 0.00 0.00 1.40
3156 6771 8.189119 ACTTCTTTTGGCCATGACTTATTTTA 57.811 30.769 6.09 0.00 0.00 1.52
3157 6772 7.066307 ACTTCTTTTGGCCATGACTTATTTT 57.934 32.000 6.09 0.00 0.00 1.82
3158 6773 6.267471 TGACTTCTTTTGGCCATGACTTATTT 59.733 34.615 6.09 0.00 0.00 1.40
3159 6774 5.774690 TGACTTCTTTTGGCCATGACTTATT 59.225 36.000 6.09 0.00 0.00 1.40
3160 6775 5.324409 TGACTTCTTTTGGCCATGACTTAT 58.676 37.500 6.09 0.00 0.00 1.73
3161 6776 4.724399 TGACTTCTTTTGGCCATGACTTA 58.276 39.130 6.09 0.00 0.00 2.24
3162 6777 3.565307 TGACTTCTTTTGGCCATGACTT 58.435 40.909 6.09 0.00 0.00 3.01
3163 6778 3.228188 TGACTTCTTTTGGCCATGACT 57.772 42.857 6.09 0.00 0.00 3.41
3164 6779 3.367703 CCATGACTTCTTTTGGCCATGAC 60.368 47.826 6.09 0.00 34.87 3.06
3165 6780 2.827322 CCATGACTTCTTTTGGCCATGA 59.173 45.455 6.09 2.39 34.87 3.07
3166 6781 3.241067 CCATGACTTCTTTTGGCCATG 57.759 47.619 6.09 0.00 33.28 3.66
3171 6786 4.326504 ACAAAGCCATGACTTCTTTTGG 57.673 40.909 0.00 0.00 0.00 3.28
3172 6787 6.587608 GGATAACAAAGCCATGACTTCTTTTG 59.412 38.462 0.00 0.00 32.17 2.44
3173 6788 6.494835 AGGATAACAAAGCCATGACTTCTTTT 59.505 34.615 0.00 0.00 35.45 2.27
3174 6789 6.012745 AGGATAACAAAGCCATGACTTCTTT 58.987 36.000 0.00 0.00 35.45 2.52
3175 6790 5.574188 AGGATAACAAAGCCATGACTTCTT 58.426 37.500 0.00 0.00 35.45 2.52
3176 6791 5.184892 AGGATAACAAAGCCATGACTTCT 57.815 39.130 0.00 0.00 35.45 2.85
3177 6792 5.904362 AAGGATAACAAAGCCATGACTTC 57.096 39.130 0.00 0.00 35.45 3.01
3178 6793 7.961326 ATAAAGGATAACAAAGCCATGACTT 57.039 32.000 0.00 0.00 35.45 3.01
3179 6794 7.961326 AATAAAGGATAACAAAGCCATGACT 57.039 32.000 0.00 0.00 35.45 3.41
3180 6795 7.010460 GCAAATAAAGGATAACAAAGCCATGAC 59.990 37.037 0.00 0.00 35.45 3.06
3181 6796 7.041107 GCAAATAAAGGATAACAAAGCCATGA 58.959 34.615 0.00 0.00 35.45 3.07
3182 6797 6.817641 TGCAAATAAAGGATAACAAAGCCATG 59.182 34.615 0.00 0.00 35.45 3.66
3183 6798 6.945218 TGCAAATAAAGGATAACAAAGCCAT 58.055 32.000 0.00 0.00 35.45 4.40
3184 6799 6.210385 TCTGCAAATAAAGGATAACAAAGCCA 59.790 34.615 0.00 0.00 35.45 4.75
3185 6800 6.630071 TCTGCAAATAAAGGATAACAAAGCC 58.370 36.000 0.00 0.00 0.00 4.35
3186 6801 8.707938 ATTCTGCAAATAAAGGATAACAAAGC 57.292 30.769 0.00 0.00 0.00 3.51
3200 6815 9.853555 CAAGGTTTGTTACATATTCTGCAAATA 57.146 29.630 0.00 0.00 0.00 1.40
3201 6816 8.367156 ACAAGGTTTGTTACATATTCTGCAAAT 58.633 29.630 0.00 0.00 42.22 2.32
3202 6817 7.721402 ACAAGGTTTGTTACATATTCTGCAAA 58.279 30.769 0.00 0.00 42.22 3.68
3203 6818 7.283625 ACAAGGTTTGTTACATATTCTGCAA 57.716 32.000 0.00 0.00 42.22 4.08
3204 6819 6.892658 ACAAGGTTTGTTACATATTCTGCA 57.107 33.333 0.00 0.00 42.22 4.41
3205 6820 9.855021 AAATACAAGGTTTGTTACATATTCTGC 57.145 29.630 0.00 0.00 42.22 4.26
3225 6840 9.554395 TCAACTTGAATCACTACTTGAAATACA 57.446 29.630 0.00 0.00 37.92 2.29
3228 6843 9.342308 TCTTCAACTTGAATCACTACTTGAAAT 57.658 29.630 4.65 0.00 37.92 2.17
3229 6844 8.731275 TCTTCAACTTGAATCACTACTTGAAA 57.269 30.769 4.65 0.00 37.92 2.69
3230 6845 8.908786 ATCTTCAACTTGAATCACTACTTGAA 57.091 30.769 4.65 0.00 37.92 2.69
3231 6846 8.908786 AATCTTCAACTTGAATCACTACTTGA 57.091 30.769 4.65 0.00 35.59 3.02
3232 6847 8.777413 TGAATCTTCAACTTGAATCACTACTTG 58.223 33.333 4.65 0.00 35.59 3.16
3233 6848 8.908786 TGAATCTTCAACTTGAATCACTACTT 57.091 30.769 4.65 0.00 35.59 2.24
3234 6849 8.944029 CATGAATCTTCAACTTGAATCACTACT 58.056 33.333 4.65 0.00 41.13 2.57
3235 6850 8.725148 ACATGAATCTTCAACTTGAATCACTAC 58.275 33.333 0.00 0.00 41.13 2.73
3236 6851 8.853077 ACATGAATCTTCAACTTGAATCACTA 57.147 30.769 0.00 0.00 41.13 2.74
3237 6852 7.756395 ACATGAATCTTCAACTTGAATCACT 57.244 32.000 0.00 0.00 41.13 3.41
3238 6853 9.334693 GTAACATGAATCTTCAACTTGAATCAC 57.665 33.333 0.00 0.00 41.13 3.06
3239 6854 8.514594 GGTAACATGAATCTTCAACTTGAATCA 58.485 33.333 0.00 6.69 41.13 2.57
3240 6855 8.734386 AGGTAACATGAATCTTCAACTTGAATC 58.266 33.333 0.00 1.37 41.13 2.52
3241 6856 8.641498 AGGTAACATGAATCTTCAACTTGAAT 57.359 30.769 0.00 0.00 41.13 2.57
3242 6857 9.739276 ATAGGTAACATGAATCTTCAACTTGAA 57.261 29.630 0.00 4.16 41.13 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.