Multiple sequence alignment - TraesCS5B01G085600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G085600 chr5B 100.000 2231 0 0 1 2231 108552384 108550154 0.000000e+00 4120.0
1 TraesCS5B01G085600 chr5A 93.600 1250 67 7 570 1806 103568670 103569919 0.000000e+00 1853.0
2 TraesCS5B01G085600 chr5A 96.112 463 8 2 1 463 103568219 103568671 0.000000e+00 747.0
3 TraesCS5B01G085600 chr5A 88.756 418 42 5 1805 2218 103569951 103570367 7.110000e-140 507.0
4 TraesCS5B01G085600 chr5A 91.129 124 11 0 1065 1188 103901734 103901857 3.810000e-38 169.0
5 TraesCS5B01G085600 chr5D 92.537 1273 55 19 570 1803 99419191 99417920 0.000000e+00 1788.0
6 TraesCS5B01G085600 chr5D 93.304 448 20 9 16 463 99419627 99419190 0.000000e+00 652.0
7 TraesCS5B01G085600 chr5D 89.120 432 33 11 1806 2231 99417888 99417465 1.960000e-145 525.0
8 TraesCS5B01G085600 chr5D 86.813 91 12 0 1661 1751 456802721 456802631 3.920000e-18 102.0
9 TraesCS5B01G085600 chr5D 93.182 44 3 0 1189 1232 99350859 99350816 5.140000e-07 65.8
10 TraesCS5B01G085600 chr3D 92.593 81 6 0 1671 1751 320562576 320562656 1.400000e-22 117.0
11 TraesCS5B01G085600 chr4B 97.059 34 0 1 1653 1685 480940539 480940506 3.090000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G085600 chr5B 108550154 108552384 2230 True 4120.000000 4120 100.000000 1 2231 1 chr5B.!!$R1 2230
1 TraesCS5B01G085600 chr5A 103568219 103570367 2148 False 1035.666667 1853 92.822667 1 2218 3 chr5A.!!$F2 2217
2 TraesCS5B01G085600 chr5D 99417465 99419627 2162 True 988.333333 1788 91.653667 16 2231 3 chr5D.!!$R3 2215

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
453 463 0.817634 TCCCAACAAACAGAGCCGTG 60.818 55.0 0.0 0.0 0.0 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1939 2029 0.831307 GGGTACGCATCCCTCTCTTT 59.169 55.0 4.83 0.0 41.58 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 1.098869 TTTGTGCACGCCTTTTCTCA 58.901 45.000 13.13 0.00 0.00 3.27
119 129 3.044235 TGTCAGTGTCCATTGTAGCTG 57.956 47.619 0.00 0.00 0.00 4.24
124 134 2.093447 AGTGTCCATTGTAGCTGGCTAC 60.093 50.000 21.58 21.58 46.56 3.58
322 332 0.905357 AGTTTGACTCGATCTGGGGG 59.095 55.000 0.00 0.00 0.00 5.40
453 463 0.817634 TCCCAACAAACAGAGCCGTG 60.818 55.000 0.00 0.00 0.00 4.94
467 477 1.677942 GCCGTGGCTAGTACTACTCT 58.322 55.000 2.98 0.00 38.26 3.24
468 478 1.603326 GCCGTGGCTAGTACTACTCTC 59.397 57.143 2.98 0.00 38.26 3.20
469 479 2.745812 GCCGTGGCTAGTACTACTCTCT 60.746 54.545 2.98 0.00 38.26 3.10
470 480 3.132925 CCGTGGCTAGTACTACTCTCTC 58.867 54.545 0.00 0.00 0.00 3.20
471 481 3.181463 CCGTGGCTAGTACTACTCTCTCT 60.181 52.174 0.00 0.00 0.00 3.10
472 482 4.039004 CCGTGGCTAGTACTACTCTCTCTA 59.961 50.000 0.00 0.00 0.00 2.43
473 483 5.279607 CCGTGGCTAGTACTACTCTCTCTAT 60.280 48.000 0.00 0.00 0.00 1.98
474 484 5.865552 CGTGGCTAGTACTACTCTCTCTATC 59.134 48.000 0.00 0.00 0.00 2.08
475 485 6.294899 CGTGGCTAGTACTACTCTCTCTATCT 60.295 46.154 0.00 0.00 0.00 1.98
476 486 7.095270 GTGGCTAGTACTACTCTCTCTATCTC 58.905 46.154 0.00 0.00 0.00 2.75
477 487 6.783482 TGGCTAGTACTACTCTCTCTATCTCA 59.217 42.308 0.00 0.00 0.00 3.27
478 488 7.290481 TGGCTAGTACTACTCTCTCTATCTCAA 59.710 40.741 0.00 0.00 0.00 3.02
479 489 8.152246 GGCTAGTACTACTCTCTCTATCTCAAA 58.848 40.741 0.00 0.00 0.00 2.69
480 490 9.550406 GCTAGTACTACTCTCTCTATCTCAAAA 57.450 37.037 0.00 0.00 0.00 2.44
489 499 9.693739 ACTCTCTCTATCTCAAAATAGTCTCAA 57.306 33.333 0.00 0.00 32.18 3.02
490 500 9.950680 CTCTCTCTATCTCAAAATAGTCTCAAC 57.049 37.037 0.00 0.00 32.18 3.18
491 501 9.467796 TCTCTCTATCTCAAAATAGTCTCAACA 57.532 33.333 0.00 0.00 32.18 3.33
547 557 7.678947 ACTGAAGACACTTATTTTGAGATGG 57.321 36.000 0.00 0.00 0.00 3.51
548 558 7.453393 ACTGAAGACACTTATTTTGAGATGGA 58.547 34.615 0.00 0.00 0.00 3.41
549 559 7.939039 ACTGAAGACACTTATTTTGAGATGGAA 59.061 33.333 0.00 0.00 0.00 3.53
550 560 8.690203 TGAAGACACTTATTTTGAGATGGAAA 57.310 30.769 0.00 0.00 0.00 3.13
551 561 9.130661 TGAAGACACTTATTTTGAGATGGAAAA 57.869 29.630 0.00 0.00 0.00 2.29
552 562 9.965824 GAAGACACTTATTTTGAGATGGAAAAA 57.034 29.630 0.00 0.00 0.00 1.94
553 563 9.971922 AAGACACTTATTTTGAGATGGAAAAAG 57.028 29.630 0.00 0.00 0.00 2.27
554 564 9.136323 AGACACTTATTTTGAGATGGAAAAAGT 57.864 29.630 0.00 0.00 0.00 2.66
561 571 6.721571 TTTGAGATGGAAAAAGTACTAGCG 57.278 37.500 0.00 0.00 0.00 4.26
562 572 5.401531 TGAGATGGAAAAAGTACTAGCGT 57.598 39.130 0.00 0.00 0.00 5.07
563 573 5.168569 TGAGATGGAAAAAGTACTAGCGTG 58.831 41.667 0.00 0.00 0.00 5.34
564 574 3.933332 AGATGGAAAAAGTACTAGCGTGC 59.067 43.478 0.00 0.00 0.00 5.34
565 575 2.063266 TGGAAAAAGTACTAGCGTGCG 58.937 47.619 0.00 0.00 0.00 5.34
566 576 2.064014 GGAAAAAGTACTAGCGTGCGT 58.936 47.619 0.00 0.00 0.00 5.24
567 577 2.091744 GGAAAAAGTACTAGCGTGCGTC 59.908 50.000 0.00 0.00 0.00 5.19
568 578 1.334054 AAAAGTACTAGCGTGCGTCG 58.666 50.000 0.00 0.00 43.12 5.12
717 728 1.097547 CGCCGAAAGAGATGGCCATT 61.098 55.000 21.84 9.99 46.12 3.16
779 790 0.941542 GCGCTACCAAACAGACACAA 59.058 50.000 0.00 0.00 0.00 3.33
890 903 3.006537 GGCATTCCGGCACTATAAGTAGA 59.993 47.826 0.00 0.00 40.76 2.59
960 973 4.592485 AGCGAAAACAGAGAGAAGAGAA 57.408 40.909 0.00 0.00 0.00 2.87
1021 1034 0.811616 GGAGATGTGCATGGACGACC 60.812 60.000 13.03 9.11 0.00 4.79
1032 1045 1.079750 GGACGACCAGTGGAAGCTC 60.080 63.158 18.40 1.19 35.97 4.09
1200 1216 1.521457 CTACATCATGCGCCGGTGT 60.521 57.895 17.91 16.00 0.00 4.16
1242 1258 0.037975 GGGACTAGCGTCGGTTTGAA 60.038 55.000 0.65 0.00 41.16 2.69
1244 1260 1.066136 GACTAGCGTCGGTTTGAACC 58.934 55.000 0.65 2.75 45.76 3.62
1295 1311 5.735766 AGGTTAACTAAGAGATGTGCCTTC 58.264 41.667 5.42 0.00 0.00 3.46
1314 1330 1.291637 TCATTCCCATGGCCATCCTTT 59.708 47.619 17.61 0.00 0.00 3.11
1386 1409 4.170292 CAGCTTCATTAGTTTGCTGCTT 57.830 40.909 0.00 0.00 43.30 3.91
1392 1415 3.753272 TCATTAGTTTGCTGCTTCAGTCC 59.247 43.478 0.00 0.00 33.43 3.85
1397 1420 0.767375 TTGCTGCTTCAGTCCCTTCT 59.233 50.000 0.00 0.00 33.43 2.85
1411 1434 3.637229 GTCCCTTCTATAGCACTGCACTA 59.363 47.826 3.30 0.00 0.00 2.74
1442 1465 2.036006 TACCGCGGCAACCAATGTC 61.036 57.895 28.58 0.00 0.00 3.06
1466 1489 1.134670 GGCTAGTCCTCTTCGTTGCAT 60.135 52.381 0.00 0.00 0.00 3.96
1522 1546 5.900339 TGACTAGTGTGTTCAAATTCGTC 57.100 39.130 0.00 0.00 0.00 4.20
1553 1599 5.668578 CGAAAATGAAAATGTCGACGAGATC 59.331 40.000 11.62 7.60 33.63 2.75
1587 1634 7.990886 AGAAAAACTGAACATGTTACTCTGGTA 59.009 33.333 11.95 0.00 0.00 3.25
1597 1644 6.534079 ACATGTTACTCTGGTATAGAAAACGC 59.466 38.462 0.00 0.00 35.58 4.84
1607 1654 2.892373 TAGAAAACGCTTTGCATCCG 57.108 45.000 0.00 0.00 0.00 4.18
1765 1821 7.648142 AGAAGTTGAAATATTTTTGCTGACGA 58.352 30.769 1.43 0.00 0.00 4.20
1796 1852 2.980568 ACTCATTATTTTGTCGGCCGA 58.019 42.857 27.28 27.28 0.00 5.54
1812 1901 2.031683 GGCCGATCATACCAAAAACTCG 59.968 50.000 0.00 0.00 0.00 4.18
1813 1902 2.538939 GCCGATCATACCAAAAACTCGC 60.539 50.000 0.00 0.00 0.00 5.03
1814 1903 2.675844 CCGATCATACCAAAAACTCGCA 59.324 45.455 0.00 0.00 0.00 5.10
1816 1905 4.334443 CGATCATACCAAAAACTCGCAAG 58.666 43.478 0.00 0.00 0.00 4.01
1836 1925 5.563867 GCAAGAACGTAATCAAAATGGGTCA 60.564 40.000 0.00 0.00 0.00 4.02
1852 1941 2.484264 GGGTCACATTTGAAAGTCCTCG 59.516 50.000 0.00 0.00 31.90 4.63
1863 1952 3.071023 TGAAAGTCCTCGTCACCAGAAAT 59.929 43.478 0.00 0.00 0.00 2.17
1878 1967 8.054236 GTCACCAGAAATACGAATATGTAAACG 58.946 37.037 0.00 0.00 0.00 3.60
1881 1970 9.321562 ACCAGAAATACGAATATGTAAACGAAT 57.678 29.630 0.00 0.00 0.00 3.34
1898 1988 9.989394 GTAAACGAATTCAATTTAGTCTTTTGC 57.011 29.630 6.22 0.00 0.00 3.68
1939 2029 5.350504 TTGAAACATCCAAAGCCAAAAGA 57.649 34.783 0.00 0.00 0.00 2.52
1955 2045 4.253685 CAAAAGAAAGAGAGGGATGCGTA 58.746 43.478 0.00 0.00 0.00 4.42
1987 2077 3.067833 GCGTGCTATAAATCCTCTTCCC 58.932 50.000 0.00 0.00 0.00 3.97
1988 2078 3.318017 CGTGCTATAAATCCTCTTCCCG 58.682 50.000 0.00 0.00 0.00 5.14
2012 2103 1.176527 ACGTGGGGAATTTGCATCTG 58.823 50.000 0.00 0.00 0.00 2.90
2026 2117 1.871408 GCATCTGACATGCTAGTCCCG 60.871 57.143 0.00 0.00 41.52 5.14
2028 2119 1.393603 TCTGACATGCTAGTCCCGAG 58.606 55.000 0.00 0.00 37.73 4.63
2030 2121 1.066303 CTGACATGCTAGTCCCGAGAC 59.934 57.143 0.00 0.00 43.89 3.36
2109 2201 0.387929 TCGTTCGAAACAGAGCCACT 59.612 50.000 0.00 0.00 0.00 4.00
2124 2216 3.230134 AGCCACTAAAACATGCCTTGAA 58.770 40.909 0.00 0.00 0.00 2.69
2195 2287 0.036732 GTCCTTGTGCATCCTCCACA 59.963 55.000 0.00 0.00 41.11 4.17
2206 2298 0.106669 TCCTCCACATCGTCCGATCT 60.107 55.000 0.00 0.00 31.62 2.75
2208 2300 0.596083 CTCCACATCGTCCGATCTGC 60.596 60.000 0.00 0.00 31.62 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 3.505680 CCAACCTCATCCATCGTTCAAAA 59.494 43.478 0.00 0.00 0.00 2.44
453 463 7.235935 TGAGATAGAGAGAGTAGTACTAGCC 57.764 44.000 1.87 0.00 0.00 3.93
463 473 9.693739 TTGAGACTATTTTGAGATAGAGAGAGT 57.306 33.333 0.00 0.00 34.44 3.24
464 474 9.950680 GTTGAGACTATTTTGAGATAGAGAGAG 57.049 37.037 0.00 0.00 34.44 3.20
465 475 9.467796 TGTTGAGACTATTTTGAGATAGAGAGA 57.532 33.333 0.00 0.00 34.44 3.10
521 531 9.219603 CCATCTCAAAATAAGTGTCTTCAGTTA 57.780 33.333 0.00 0.00 41.69 2.24
522 532 7.939039 TCCATCTCAAAATAAGTGTCTTCAGTT 59.061 33.333 0.00 0.00 39.99 3.16
523 533 7.453393 TCCATCTCAAAATAAGTGTCTTCAGT 58.547 34.615 0.00 0.00 0.00 3.41
524 534 7.912056 TCCATCTCAAAATAAGTGTCTTCAG 57.088 36.000 0.00 0.00 0.00 3.02
525 535 8.690203 TTTCCATCTCAAAATAAGTGTCTTCA 57.310 30.769 0.00 0.00 0.00 3.02
526 536 9.965824 TTTTTCCATCTCAAAATAAGTGTCTTC 57.034 29.630 0.00 0.00 0.00 2.87
527 537 9.971922 CTTTTTCCATCTCAAAATAAGTGTCTT 57.028 29.630 0.00 0.00 0.00 3.01
528 538 9.136323 ACTTTTTCCATCTCAAAATAAGTGTCT 57.864 29.630 0.00 0.00 0.00 3.41
535 545 8.879759 CGCTAGTACTTTTTCCATCTCAAAATA 58.120 33.333 0.00 0.00 0.00 1.40
536 546 7.390718 ACGCTAGTACTTTTTCCATCTCAAAAT 59.609 33.333 0.00 0.00 0.00 1.82
537 547 6.708949 ACGCTAGTACTTTTTCCATCTCAAAA 59.291 34.615 0.00 0.00 0.00 2.44
538 548 6.147164 CACGCTAGTACTTTTTCCATCTCAAA 59.853 38.462 0.00 0.00 0.00 2.69
539 549 5.637810 CACGCTAGTACTTTTTCCATCTCAA 59.362 40.000 0.00 0.00 0.00 3.02
540 550 5.168569 CACGCTAGTACTTTTTCCATCTCA 58.831 41.667 0.00 0.00 0.00 3.27
541 551 4.033014 GCACGCTAGTACTTTTTCCATCTC 59.967 45.833 0.00 0.00 0.00 2.75
542 552 3.933332 GCACGCTAGTACTTTTTCCATCT 59.067 43.478 0.00 0.00 0.00 2.90
543 553 3.241995 CGCACGCTAGTACTTTTTCCATC 60.242 47.826 0.00 0.00 0.00 3.51
544 554 2.671396 CGCACGCTAGTACTTTTTCCAT 59.329 45.455 0.00 0.00 0.00 3.41
545 555 2.063266 CGCACGCTAGTACTTTTTCCA 58.937 47.619 0.00 0.00 0.00 3.53
546 556 2.064014 ACGCACGCTAGTACTTTTTCC 58.936 47.619 0.00 0.00 0.00 3.13
547 557 2.222223 CGACGCACGCTAGTACTTTTTC 60.222 50.000 0.00 0.00 34.51 2.29
548 558 1.717645 CGACGCACGCTAGTACTTTTT 59.282 47.619 0.00 0.00 34.51 1.94
549 559 1.334054 CGACGCACGCTAGTACTTTT 58.666 50.000 0.00 0.00 34.51 2.27
550 560 3.011513 CGACGCACGCTAGTACTTT 57.988 52.632 0.00 0.00 34.51 2.66
551 561 4.759564 CGACGCACGCTAGTACTT 57.240 55.556 0.00 0.00 34.51 2.24
560 570 2.101209 AAAAACTGGAGCGACGCACG 62.101 55.000 23.70 12.48 45.66 5.34
561 571 0.863144 TAAAAACTGGAGCGACGCAC 59.137 50.000 23.70 16.32 0.00 5.34
562 572 1.730064 GATAAAAACTGGAGCGACGCA 59.270 47.619 23.70 0.00 0.00 5.24
563 573 1.730064 TGATAAAAACTGGAGCGACGC 59.270 47.619 13.03 13.03 0.00 5.19
564 574 3.616821 TGATGATAAAAACTGGAGCGACG 59.383 43.478 0.00 0.00 0.00 5.12
565 575 5.504665 CCATGATGATAAAAACTGGAGCGAC 60.505 44.000 0.00 0.00 0.00 5.19
566 576 4.576053 CCATGATGATAAAAACTGGAGCGA 59.424 41.667 0.00 0.00 0.00 4.93
567 577 4.576053 TCCATGATGATAAAAACTGGAGCG 59.424 41.667 0.00 0.00 0.00 5.03
568 578 6.444633 CATCCATGATGATAAAAACTGGAGC 58.555 40.000 0.00 0.00 42.09 4.70
890 903 1.131928 AGAGCCGGGTAACTTGGGTT 61.132 55.000 5.91 0.00 41.66 4.11
960 973 3.817084 CGATCTCCCAATATGCAATGTGT 59.183 43.478 0.00 0.00 0.00 3.72
1032 1045 2.437359 CGGCTGCCCTTCTTGGAG 60.437 66.667 14.12 0.00 38.35 3.86
1242 1258 1.181786 CTCTCGAAGCAGAGAAGGGT 58.818 55.000 7.73 0.00 45.52 4.34
1295 1311 1.414919 CAAAGGATGGCCATGGGAATG 59.585 52.381 26.56 11.63 36.29 2.67
1314 1330 9.706691 CTACAATCTTTCTTAGTCTACCAAACA 57.293 33.333 0.00 0.00 0.00 2.83
1392 1415 4.500545 CCTGTAGTGCAGTGCTATAGAAGG 60.501 50.000 17.60 12.02 43.55 3.46
1397 1420 4.405680 ACATTCCTGTAGTGCAGTGCTATA 59.594 41.667 17.60 6.22 43.55 1.31
1411 1434 1.202486 CCGCGGTACATACATTCCTGT 60.202 52.381 19.50 0.00 39.49 4.00
1522 1546 5.624900 TCGACATTTTCATTTTCGCTCTTTG 59.375 36.000 0.00 0.00 0.00 2.77
1587 1634 3.006940 TCGGATGCAAAGCGTTTTCTAT 58.993 40.909 0.00 0.00 0.00 1.98
1597 1644 3.624326 TTTCAGTTGTCGGATGCAAAG 57.376 42.857 0.00 0.00 0.00 2.77
1757 1813 2.300152 AGTTTCAGATCCTTCGTCAGCA 59.700 45.455 0.00 0.00 0.00 4.41
1758 1814 2.926838 GAGTTTCAGATCCTTCGTCAGC 59.073 50.000 0.00 0.00 0.00 4.26
1760 1816 4.808414 ATGAGTTTCAGATCCTTCGTCA 57.192 40.909 0.00 0.00 0.00 4.35
1765 1821 8.454106 CGACAAAATAATGAGTTTCAGATCCTT 58.546 33.333 0.00 0.00 0.00 3.36
1796 1852 5.616866 CGTTCTTGCGAGTTTTTGGTATGAT 60.617 40.000 0.00 0.00 0.00 2.45
1812 1901 4.805219 ACCCATTTTGATTACGTTCTTGC 58.195 39.130 0.00 0.00 0.00 4.01
1813 1902 5.856455 GTGACCCATTTTGATTACGTTCTTG 59.144 40.000 0.00 0.00 0.00 3.02
1814 1903 5.533154 TGTGACCCATTTTGATTACGTTCTT 59.467 36.000 0.00 0.00 0.00 2.52
1816 1905 5.365403 TGTGACCCATTTTGATTACGTTC 57.635 39.130 0.00 0.00 0.00 3.95
1836 1925 3.139077 GGTGACGAGGACTTTCAAATGT 58.861 45.455 0.00 0.00 0.00 2.71
1847 1936 2.439409 TCGTATTTCTGGTGACGAGGA 58.561 47.619 0.00 0.00 39.25 3.71
1852 1941 8.054236 CGTTTACATATTCGTATTTCTGGTGAC 58.946 37.037 0.00 0.00 0.00 3.67
1923 2013 5.458041 TCTCTTTCTTTTGGCTTTGGATG 57.542 39.130 0.00 0.00 0.00 3.51
1939 2029 0.831307 GGGTACGCATCCCTCTCTTT 59.169 55.000 4.83 0.00 41.58 2.52
1955 2045 1.054406 ATAGCACGCAGGTATGGGGT 61.054 55.000 0.06 0.00 43.41 4.95
1960 2050 4.528596 AGAGGATTTATAGCACGCAGGTAT 59.471 41.667 5.64 5.64 43.09 2.73
1961 2051 3.895656 AGAGGATTTATAGCACGCAGGTA 59.104 43.478 0.00 0.00 34.18 3.08
1963 2053 3.393089 AGAGGATTTATAGCACGCAGG 57.607 47.619 0.00 0.00 0.00 4.85
1987 2077 1.303806 AAATTCCCCACGTTCCCCG 60.304 57.895 0.00 0.00 44.03 5.73
1988 2078 1.884075 GCAAATTCCCCACGTTCCCC 61.884 60.000 0.00 0.00 0.00 4.81
2012 2103 3.949031 GTCTCGGGACTAGCATGTC 57.051 57.895 8.58 1.13 39.24 3.06
2026 2117 2.603560 GCTTACAATGGTACGCAGTCTC 59.396 50.000 3.91 0.00 43.93 3.36
2028 2119 1.323534 CGCTTACAATGGTACGCAGTC 59.676 52.381 9.23 0.00 42.97 3.51
2030 2121 1.635844 TCGCTTACAATGGTACGCAG 58.364 50.000 9.23 2.73 42.97 5.18
2035 2127 3.101437 TCTCCCTTCGCTTACAATGGTA 58.899 45.455 0.00 0.00 0.00 3.25
2095 2187 4.466828 CATGTTTTAGTGGCTCTGTTTCG 58.533 43.478 0.00 0.00 0.00 3.46
2109 2201 8.347004 TGAGTAATGATTCAAGGCATGTTTTA 57.653 30.769 0.00 0.00 0.00 1.52
2146 2238 2.555199 CCAAGAAGGCGGATACTTCAG 58.445 52.381 7.78 0.67 45.18 3.02
2151 2243 1.526225 GCCCCAAGAAGGCGGATAC 60.526 63.158 0.00 0.00 41.41 2.24
2195 2287 2.278857 GCACGCAGATCGGACGAT 60.279 61.111 6.95 6.95 43.86 3.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.