>input_sequence_86444
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----------------------------------------------------ATGGAGATGTGCATGGACGACCAGTGGA
AGCTCTCCAAGAAGGGCAGCCGGAGGTCGGCGGCGGTGGCGCCGGCGGTGGCCACCGGCAGTCCAGTGGGCGTC---AAG
GGCCGGACGTCGAGGGGCTCCGGCCGGTCCGTGCCGGGGCGGCTGGCGAGCCTGGCCAAGCAGCAGAGGGCCAGGTTCTA
CATCATGCGCCGGTGTGTCACCATGCTCGTGTGCTGGCGGGACTAG----------------------------------
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>chr5B_1_TraesCS5B01G085600
GCTATTAGTGTCTTGTTTTGAACGATGGATGAGGTTGGTTAAGTGCTGGATACCTATCAAACCTGAGTTTGTGCACGCCT
TTTCTCAACTCGCGCGCGTTGTCAGTGTCCATTGTA---------GCTGGCTACTGCGCGGTCGCTAGGAGCCATGTGGG
CTTTGTGTGCCCATGAGGGCTCGAGCCTTTACTCGCTGCTGCTCCAACAGATAGCAGTGTGTTCCTCGTTAGTTGATTAA
CTACGTCGCGTCGTGATCCATCACACGGACGGTGACTTGTCGTGCTCTGTGGCGTGTGTTGGAGAGAGAGCGAGTTTGAC
TCGATCTGGGGGCTCGGTGGCCGGTCGTGCTCGGCGATTCAAGATGATACAGTCGCATGCTACGTGGATCCGTTAACTCC
CACGAACGTTTCTGACGCGCCTACAAAGTTTACTGCTACATGTTCCCAACAAACAGAGCCGTGGCTAGTACTACTCTCTC
TATCTCAAAATAGTCTCAACATTATACTAGCTCTAGTATAAATTTGTATTTAACTGAAGACACTTATTTTGAGATGGAAA
AAGTACTAGCGTGCGTCGCTCCAGTTTTTATCATCATGGATGGACCCTGCCCAGCTCAGTTTATGCTAGTACAGTTT-GT
AGGTTCAGCACGCTCCGGTTCAAATCAAAGGTCCTAAGAAAATTGCACCGCAACTACTTGAGCGTGGGCGCCGAAAGAGA
TGGCCATTGCCGCCAGGGGACACAGTCCCATAAATTATTTGGAAAGAGATGCGCTACCAAACAGACACAAAA--AATAGT
CTTAGTTAATCTACTTACTTAATCAACCTCTATCTCCTCTCCTCTCCAATCAAATCCAACCCCCTCATCCACCTTGGATT
GGCATTCCGGCACTATAAGTAGAACCCAAGTTACCCGGCTCTCACACCAACAACCATCCTCAACGACCAAAAGCGAAAAC
AGAGAGAAGAGAACACATTGCATATTGGGAGATCGGAAGAAACAGAGAAGAGATGGAGATGTGCATGGACGACCAGTGGA
AGCTCTCCAAGAAGGGCAGCCGGAGGTCGGCGGCGGTGGCGCCGGCGGTGGCCACCGGCAGTCCAGTGGGCGTC---AAG
GGCCGGACGTCGAGGGGCTCCGGCCGGTCCGTGCCGGGGCGGCTGGCGAGCCTGGCCAAGCAGCAGAGGGCCAGGTTCTA
CATCATGCGCCGGTGTGTCACCATGCTCGTGTGCTGGCGGGACTAGCGTCGGTTTGAACCCTTCTCTGCTTCGAGAGACG
GAGACAGAGGTTAACTAAGAGATGTGCCTTCATTCCCATGGCCATCCTTTGTTTGGTAGACTAAGAAAGATTGTAGATAA
CACAGTGTGTCACGGCCAAACAGCTTC-ATTAGTTTG------CTGCTTCAGTCCCTTCTATAGCACTGCACTACAGGAA
TGTATGTACCGCGGCAACCAATGTCTAAGGCTAGTCCTCTTCGTTGCATTTTTTTCGGTTTTTTG-AGATCTATGATGTT
TGTTGACTAGTGTGTTCAAATTCGTCAAAGAGCG-AAAATGA---------------------AAATGTCGACGAGATCC
GGGTTCAGAAAAA-CTGAACATGTTACTCTGGTATAGAAAACGCTTTGCATCCGACAACTGAAAATTGTTCGTTGTTCAA
TTA---GGATTTTG-----GGAGCACCTTTTAAGTTTCAGTTTCTAAAACTTACATTTTTGTCGGTCACAGGTTCTGAAA
CTTACGATTTTATCGGTCGCTTGTACCAAGTTTTAGAAGTTGAAATA-TTTTTGCTGACGAAGGATCTGAAACTCATTAT
TTTGTCGGCCGATCATACCAA---------------------------------AAACTCGCAAGAACGTAATCAAAATG
GGTCACATTTGAAAGTCCTCGTCACCAGAAATACGAATATGTAAACGAATTC-AATTTAGTCTTTTGCTTCAAAAGATAT
GAAAGATTGAAACATCCAAAGCCAAAAGAAAGAGAGGGATGCGTACCCCATACCTGCGTGCTATAAATCCTCTTCCCGGG
GAACG-TGGGGAATTTGCATCTGACATGCTAGTCCCGAGAC-TGCGTACCATTGTAAGCGAAGGGAGATTGTCTATCGCT
ATCCTCATTAGTGTTATTTTTTCGTTCGAAACAGAGCCACTAAAACATGCCTTGAATCATTACTCATTTAAAGGATACTG
AAGTATCCGCCTTCTTGGGGCATCCGCGTCCTTGTGCATCCTCCACATCGTCCGATCTGCGTGCGCCCCGCGCCACTGCT
GC
>chr5A_1
GCTATTAGTGTCTTGCTTTGAACGATGGATGAGGTTGGCTAAGTGCTGGATACCTATCAAACCTGAGTTTGTGCACGCCT
TTTCTCGACTCGCGCGCGTTGTCAGTGTCCATT-----------AGCTAGCTAGTGCGCGGTCGCTAGGAGCCATGTGGG
CTTTGTGTGCCCATGAGGGCTCGAGCCTTTACTCGCTGCTGCTCCAACAGATAGCAGTGTGTTCCTCGTTAGTTGATTAA
CTACGTCGCGTCGTGATCCATCACACGGACGGTGACTTGTCGTGCTCCGTGGCGTGTGTTGGAGAGAGAGCGAGTTTGAC
TCGATCTG--------GTGGCCGGTCGTGCTCGGCGATTCAAGATGATACAGTCGCATGCTACGTGGATCCGTTAACTCC
CACGAACGTCTCTGACGCGCCTACAAAGTTTACTGCTACATGTTCCCAACAAACAGAGCCGTAGCTAGTA----------
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------------------CTCCAGTTTTTATCATCATGGATGGACCCTGCCCAGCTCAGTTTATGCTAGTACAGTTTTGT
AGGTTCAGCACGCTCCGGTTCAAATCAAAGGTCCTAAGAAAATTGCACCGCTACTACTTGAGCGTGGGCGCCGAAAGAGA
TGGCCATCACCCCCAGGGGACACGGTCCCATAAATTATTTTGAAAGAGATGCGCTACCAAACAGACACACAAACAATAGT
CTTAGTTAAGCTACTTACTTAATCAACCTCTATCTCCTCTCCTCTCCAATCAAATCCAACCCCCTCATCCACCTTGGATT
GGCATTCGGCCACTATAAGTAGCACCCAAGTTACCCGGCTCTCACGCCAACAACCATCCTCAACGACCAGAAGCCAAAAC
AGAGAGAAGAGAGCACATTGCATATTGGGAGATCGGAAGAAACAGAGAAGAGATGGAGATGTGCATGGACGACAAGTGGA
AGCTGTCCAAGAAGGGCAGCCGGAGGTCGGCCGCGGTGGCGCCGGCGGCGGCCACCGGCAGTCCGGTGGGCGTCAAGAAG
GGCCGGGCGTCGAGGGGCTCGGGCCGGTCCGTGCCGGGGCGGCTGGCGAGCCTGGCCAAGCAGCAGAGGGCCAGGTTCTA
CATCATGCGCCGGTGCGTCACCATGCTCGTGTGCTGGCGGGACTAGCGTCGGTTTGATCTCTTCTCTGCTTCGAGAGACG
GAGACAGAGGTTAACTAAGAGATGTGCCTTAATTCCCATGGCCATCCTTGGTTTGGTAGACTAAGAAAGATTGTAGATAA
CACAGTGTGTCACGGCCAAACAGCTTCCATTAGTTTG------CTGCTCCAGTCACTTCCATAGCACTGCGCTGCAGGAA
TGTATGTACCGCGGCAACCAATGTGTAAGGCTAGTCCTCTTCGTTGCAATTTTTTCGGTTTTTGG-AGATCTATGATGTT
TGTTGACTAGTGTGTTCAAATTCGTGAAAGAGCGAAAAATGA---------------------AAATGTCGACGAGATTC
GGGTTCAGAAAAAG-TGAACATGTTATTCTGGTTCAGAAAACGGTTTGCATCCCACAACATAAAATTGTTCGTGGTTCAA
TTA---GGATTTTATATTAGGAGCACTTTTTTAGTTTCAATTTCTAGAACTTACGTTTTTGTCGGTCATAGGTTCTAAAA
CATACGATTTTATCGGTCGCTCGTACCGAGTTTCAGAAGTTGAAATA-TTTTGTCACACGCATGATTTGAAACTCATTAT
TTTGTTGGTCGCTCATACCAAGTTCCAAAAGTTGAAACTTAAGGGAATTTTAAAAAACTCATCAAAACGTAATCAAAATG
GGTCTCGTTTGAAAGCCCTTATCACCAGAAACACGAATATGTAAACTAAATTTAATTTTGACTTTTGGTTCAAAAGATAT
GAAAGATTGAAAAATCCAAAGCCAAAAGTAAGAGAGGGATGCGTGCCCCGCATCTGCGTGCTATAAATCCTCTTCCATGG
GAACGGCAGGGAATTTGCATCTCACATGCTAGTCCCCACATTTGCGAACCATTGTAAGCGAAGAGAGATTGTCTATGGCT
ATCCTCATTAGTGTTATTTTTTCGTTTGAAACAGAGCCACAAAAACATGCCTTGATTCATTACTCATTTAAAGGATATTG
AACTATCCGCCTTCTTGGGGCATTCGCGTCCTCGTGCATCCTCCATGTCGTCCTATCCGTCTGCGCCCC-----------
--
>chr5D_16
TTTTC---------------AACGATGGATGAGGTTGGTTAAGTGCTGGATACCTATCAACCCAGAGTTTGTGCACGCCT
TTTCTCGACTCGCGCGCGTTGTCAGTGTCCATTGTACTCCTATAAGCTAGCTAGTGCGCGGTCGCTAGGAGCCATG----
---------------AGGGCTCGAGCCTTTACTCGCTGCTGCTCCAACAGATAGCAGTGTGTTCCTCGTTAGTTGATTAA
CTACGTCGCGTCGTGATCAATCACACGGACGGTGACTTGTCGTGCTCTGTGGCGTGTGTTGGAGAGAGAGCGAGTTTGAC
TCGATCTGGGGCCTCGGTGGCCGGTCGTGCTCGGCGATTCAAGATGATACAGTCCCATGCTACGTGGATCCGTTAACTCC
CACGAACGTTTCTGACGCGCCTACAAAGTTTACTGCTACATCTTCCCAACAAACAGAGCCGTAGCTAGTA----------
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------------------CTCCAGTTTTTATCATCATGGATGGACCCTGCCCAGCTCAGTTTATGCTAGTACAGTTTTGT
AGGTTCAGCACGCTCCGGTTCAAATCAAAGGTCCTAAGAAAATTGCACCGCAACAACTTGAGCGTGGGCGCCGAAAGAGA
TGGCCATCGCCGCAAGGGGACACACCCCCATAAATTATTTGGAAAGTGATGCGCTACCAAACAGACGCACAAACAATAGT
CTTAGTTAAGCTACTTACTTAATCAACCTCTATCCCCTCTCCTCTCCAATCAAATCCAGCCCCCTCATCCACCTTGGATT
GGCATTCCGGCACTATAAGTAGCACCCAAGTTACCCGGCTCTCACACCAACAACCATCCTCAACGACCAAAAGCGAAGAC
AGGGAGAAGAGAGCACATTGCATATTGGGAGATCGGAAGAAACAGAGAAGAGATGGAGATGTGCATGGACGACAAGTGGA
AGCTGTCCAAGAAGGGCAGCCGGAGGTCCGCGGCGGTGGCGCCGGCGGCGGCCACCGGCAGTCCGGTGGGTGTC---AAG
GGCCGGGCGTCGAGGGGCTCCGGCCGGTCCGTGCCGGGGCGGCTGGCGAGCCTGGCCAAGCAGCAGAGGGCCAGGTTCTA
CATCATGCGCCGGTGCGTCACCATGCTCGTGTGCTGGCGGGACTAGCCTCGGTTTGATCTCTTCTCTGCTTCGAGAGACG
GAGACAGAGGTTAACTAAGAGATGTGCCTTAATTCCCATGGCCATCCTTGGTTTGGTAGACTAAGAAAGATTGTAGATAA
CACAGTGTGTCACGGCCAAACAGCTTCCATTAGTTTGCTCTCGCTGCTCCAGTCACTTCCATAGCACTGCACTGCAGGAA
TGTATGTACCGCGGCAACCAATGTGTAAGGCTAGTCCTCTTCGTTGCAAGTTTTCGTTTTTCTTTTAGATCTATGGTGTT
TGTTAACTAGTGTGTTCAAATTCGTGAAACATGGAAATGTCGACACTTTTATTTTTAGAACCGAAATGTCGACAAAATTC
GGGTTCAGAAAAAACTGAACATGTTACTCTGGTTTAGAAAACGGTTTGCATCCAACAACTGAAAATTGTTCGTTGTTCAA
TTATTAGGATTTTG-----GGAGCACCTTTTAAGTTTCAGTTTCTAAAACTGACATTTTTGTCGGTCGCAAGTTCTGAAA
CTTACAATTTTATCGGTCGCTCGTACCAAGTTTTAGAAGTTGAAACATTTTTGTCAGACGCAGGATCTGAAACTCATTAT
TTTGTCGGCCGCTCGTAC---GTTCCAAAAGTTGAAACATAACGAAAATTTT-AAAACTCATCAAAATGTAATCAAAATG
GGTCTCATTTGAAAGCCCTCATCATCAGAAACACGAATATATAAACAAAATTTAATTTAGACTTTTGGTTCAAAAGATAT
GAAAGATTGAAAAATCCAAAGCCAAACGTAAGAGAGGGATGCGTGCCCCGCATATGCGTGCTATAAATCCTCTTCCATGG
GAACGGTGGGGAATTTGCATCTAACATGCTAGTCCCCACATT-----ACCATTGCAAGCGAAGGGAGATTGTCTATCGCT
ATCCTCATTAGTGTTATTTTTTCGTTTGAAACAGAGCCACAAAAACATGCCTTGACTCATTACTCATTTAAAGGATATTG
AACTATCCGCCTTCTTGGGGCATCCGCGTCCTCGTGCATCCTTCACGTCGTCCGATCCGTGTGCGCCCCGCTCACTGCCT
GC
>SNPs
---------------S----------------------------------------------------------------
------S-----------------------------------------S----S--------------------------
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-----------S--------------------------------------------------------------------
--------------------------------------------------------------S-------SSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS--------------------------------------------------------------
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-------S-------------------------------------------------------------S----------
---------S----------------------------------------------------------------------
----------------------S---------------------------------------------------------
------------S------------------------------------------------------------S------
----S-------------------------------------------S---------------S---------------
------S-------------------------------------------------------------------------
---------------S-----------------------------------------S-S--------------------
------------------------------S------------------S------------------------------
------------------------------------------------S-----S----S-------------S------
------------------------S-----------------------S-------------------------------
-------------------------S----------------------------------------------------S-
---------------------------------S---------S---------S--------------------------
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---------------------S------------------------------SS-S----S-------------------
-----------S------------------------------------------------SSS-S---------------
----S----------S----S----------S--------------S--S-S--------S------S------------
------------S---------------S---------------S----SS-S-----------------------SS--
----------------------S-------------S-S-S-----S---------------------------------
--------------------------S-------------S--------------S---------------------S--
--S-----------------------------S-------------S----------S-S-----------S-SSSSS--
--
>forward_463
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-------------------------------------------TCCCAACAAACAGAGCCGTG-----------------
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>reverse_2029
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----------------------------AAAGAGAGGGATGCGTACCC--------------------------------
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