Multiple sequence alignment - TraesCS5B01G080400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G080400 chr5B 100.000 4798 0 0 1 4798 98668939 98664142 0.000000e+00 8861.0
1 TraesCS5B01G080400 chr5B 86.207 116 13 3 4185 4299 650179566 650179679 6.520000e-24 122.0
2 TraesCS5B01G080400 chr5B 90.667 75 6 1 4007 4081 471409344 471409271 1.100000e-16 99.0
3 TraesCS5B01G080400 chr5A 95.749 3976 123 20 52 4010 86667449 86663503 0.000000e+00 6364.0
4 TraesCS5B01G080400 chr5A 96.552 377 12 1 4423 4798 86663367 86662991 1.470000e-174 623.0
5 TraesCS5B01G080400 chr5A 92.000 75 4 2 4007 4079 510463541 510463467 2.360000e-18 104.0
6 TraesCS5B01G080400 chr5D 97.301 2594 53 4 1430 4010 93068554 93065965 0.000000e+00 4386.0
7 TraesCS5B01G080400 chr5D 93.978 1395 56 16 52 1433 93070457 93069078 0.000000e+00 2085.0
8 TraesCS5B01G080400 chr5D 96.254 347 12 1 4452 4798 93065789 93065444 6.970000e-158 568.0
9 TraesCS5B01G080400 chr5D 84.647 241 36 1 4186 4426 414021463 414021224 6.210000e-59 239.0
10 TraesCS5B01G080400 chr5D 91.250 80 7 0 4109 4188 93065908 93065829 5.080000e-20 110.0
11 TraesCS5B01G080400 chr5D 98.077 52 1 0 1 52 36559296 36559347 1.840000e-14 91.6
12 TraesCS5B01G080400 chr5D 98.039 51 1 0 1 51 36554150 36554200 6.610000e-14 89.8
13 TraesCS5B01G080400 chr6B 86.920 237 28 3 4191 4426 155766094 155765860 3.680000e-66 263.0
14 TraesCS5B01G080400 chr6B 93.151 73 1 1 4007 4075 177273921 177273993 2.360000e-18 104.0
15 TraesCS5B01G080400 chr6B 98.113 53 1 0 1 53 648630365 648630417 5.110000e-15 93.5
16 TraesCS5B01G080400 chr6B 98.113 53 0 1 1 52 537322969 537323021 1.840000e-14 91.6
17 TraesCS5B01G080400 chr6D 86.498 237 29 3 4191 4426 81237330 81237096 1.710000e-64 257.0
18 TraesCS5B01G080400 chr6A 85.654 237 31 3 4191 4426 97816040 97815806 3.710000e-61 246.0
19 TraesCS5B01G080400 chr6A 96.364 55 0 2 1 53 574530160 574530106 6.610000e-14 89.8
20 TraesCS5B01G080400 chr2B 79.882 169 29 5 4184 4350 391291040 391290875 8.440000e-23 119.0
21 TraesCS5B01G080400 chr2B 90.625 64 6 0 1407 1470 296018016 296018079 8.560000e-13 86.1
22 TraesCS5B01G080400 chr2D 93.333 75 3 1 4007 4079 46457470 46457544 5.080000e-20 110.0
23 TraesCS5B01G080400 chr2D 90.909 77 5 1 4007 4081 46457543 46457467 8.500000e-18 102.0
24 TraesCS5B01G080400 chr2D 89.062 64 6 1 1407 1470 33312728 33312790 1.430000e-10 78.7
25 TraesCS5B01G080400 chr3B 94.203 69 3 1 4007 4075 822885355 822885422 2.360000e-18 104.0
26 TraesCS5B01G080400 chr3B 91.429 70 3 3 1407 1475 42146542 42146609 5.110000e-15 93.5
27 TraesCS5B01G080400 chr3B 96.364 55 2 0 1 55 810642333 810642279 1.840000e-14 91.6
28 TraesCS5B01G080400 chr1B 92.857 70 5 0 4006 4075 170568788 170568857 8.500000e-18 102.0
29 TraesCS5B01G080400 chr1B 88.750 80 9 0 4007 4086 183449031 183449110 1.100000e-16 99.0
30 TraesCS5B01G080400 chr1B 98.148 54 0 1 1 53 343969367 343969420 5.110000e-15 93.5
31 TraesCS5B01G080400 chr4D 92.857 70 4 1 1407 1476 113153527 113153595 3.060000e-17 100.0
32 TraesCS5B01G080400 chr4D 91.379 58 5 0 1416 1473 500419828 500419885 3.980000e-11 80.5
33 TraesCS5B01G080400 chr3A 92.754 69 5 0 4007 4075 750397185 750397253 3.060000e-17 100.0
34 TraesCS5B01G080400 chr3A 98.113 53 0 1 1 52 658750376 658750428 1.840000e-14 91.6
35 TraesCS5B01G080400 chr3A 90.000 70 5 2 1407 1476 290447795 290447728 6.610000e-14 89.8
36 TraesCS5B01G080400 chr7A 98.113 53 0 1 1 52 31580739 31580791 1.840000e-14 91.6
37 TraesCS5B01G080400 chr3D 92.188 64 4 1 1414 1477 54732419 54732357 6.610000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G080400 chr5B 98664142 98668939 4797 True 8861.00 8861 100.00000 1 4798 1 chr5B.!!$R1 4797
1 TraesCS5B01G080400 chr5A 86662991 86667449 4458 True 3493.50 6364 96.15050 52 4798 2 chr5A.!!$R2 4746
2 TraesCS5B01G080400 chr5D 93065444 93070457 5013 True 1787.25 4386 94.69575 52 4798 4 chr5D.!!$R2 4746

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
41 42 0.631212 CCAGTTCCCCCAAAGCCTAT 59.369 55.000 0.00 0.0 0.00 2.57 F
93 100 1.004394 ACCAGACCTCCGGATTTTTCC 59.996 52.381 3.57 0.0 0.00 3.13 F
145 154 1.080434 GAGCACCGCTCGACTCTTT 60.080 57.895 0.00 0.0 45.85 2.52 F
1051 1065 1.083806 TTGCTTGCCTACGCTGATCG 61.084 55.000 0.00 0.0 45.38 3.69 F
1433 1974 1.266178 GTTCCCCCACCTTTCAATGG 58.734 55.000 0.00 0.0 35.59 3.16 F
2251 2795 0.541863 ACGCTCAGGAGTTTATGGGG 59.458 55.000 0.00 0.0 0.00 4.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1131 1145 0.323360 GCCACCAATCAAGGGTAGCA 60.323 55.000 0.00 0.00 41.80 3.49 R
1379 1393 5.430089 AGAAAATAGGGGAGCTGTAACTGAT 59.570 40.000 0.00 0.00 0.00 2.90 R
1602 2143 6.092122 GCTACACAAAAAGGAAAAACTTGCTT 59.908 34.615 0.00 0.00 33.93 3.91 R
2233 2777 0.541863 ACCCCATAAACTCCTGAGCG 59.458 55.000 0.00 0.00 0.00 5.03 R
2958 3502 3.694072 AGGATGAGAAGACACGAGAAGAG 59.306 47.826 0.00 0.00 0.00 2.85 R
4221 4804 0.040646 TTGGAAGGCCTAGAGTCCGA 59.959 55.000 5.16 6.33 32.45 4.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.377136 CCTAGAGGGTTGTGCCAGT 58.623 57.895 0.00 0.00 39.65 4.00
27 28 0.693049 CCTAGAGGGTTGTGCCAGTT 59.307 55.000 0.00 0.00 39.65 3.16
28 29 1.339151 CCTAGAGGGTTGTGCCAGTTC 60.339 57.143 0.00 0.00 39.65 3.01
29 30 0.690762 TAGAGGGTTGTGCCAGTTCC 59.309 55.000 0.00 0.00 39.65 3.62
30 31 1.603739 GAGGGTTGTGCCAGTTCCC 60.604 63.158 0.00 0.00 39.65 3.97
31 32 2.600470 GGGTTGTGCCAGTTCCCC 60.600 66.667 0.00 0.00 39.65 4.81
32 33 2.600470 GGTTGTGCCAGTTCCCCC 60.600 66.667 0.00 0.00 37.17 5.40
33 34 2.197324 GTTGTGCCAGTTCCCCCA 59.803 61.111 0.00 0.00 0.00 4.96
34 35 1.456705 GTTGTGCCAGTTCCCCCAA 60.457 57.895 0.00 0.00 0.00 4.12
35 36 1.045911 GTTGTGCCAGTTCCCCCAAA 61.046 55.000 0.00 0.00 0.00 3.28
36 37 0.758685 TTGTGCCAGTTCCCCCAAAG 60.759 55.000 0.00 0.00 0.00 2.77
37 38 2.203625 TGCCAGTTCCCCCAAAGC 60.204 61.111 0.00 0.00 0.00 3.51
38 39 2.997315 GCCAGTTCCCCCAAAGCC 60.997 66.667 0.00 0.00 0.00 4.35
39 40 2.854076 CCAGTTCCCCCAAAGCCT 59.146 61.111 0.00 0.00 0.00 4.58
40 41 2.083715 CCAGTTCCCCCAAAGCCTA 58.916 57.895 0.00 0.00 0.00 3.93
41 42 0.631212 CCAGTTCCCCCAAAGCCTAT 59.369 55.000 0.00 0.00 0.00 2.57
42 43 1.007118 CCAGTTCCCCCAAAGCCTATT 59.993 52.381 0.00 0.00 0.00 1.73
43 44 2.102578 CAGTTCCCCCAAAGCCTATTG 58.897 52.381 0.00 0.00 0.00 1.90
44 45 1.716503 AGTTCCCCCAAAGCCTATTGT 59.283 47.619 0.00 0.00 0.00 2.71
45 46 2.100197 GTTCCCCCAAAGCCTATTGTC 58.900 52.381 0.00 0.00 0.00 3.18
46 47 1.681229 TCCCCCAAAGCCTATTGTCT 58.319 50.000 0.00 0.00 0.00 3.41
47 48 2.000048 TCCCCCAAAGCCTATTGTCTT 59.000 47.619 0.00 0.00 0.00 3.01
48 49 3.194620 TCCCCCAAAGCCTATTGTCTTA 58.805 45.455 0.00 0.00 0.00 2.10
49 50 3.053917 TCCCCCAAAGCCTATTGTCTTAC 60.054 47.826 0.00 0.00 0.00 2.34
50 51 3.308832 CCCCCAAAGCCTATTGTCTTACA 60.309 47.826 0.00 0.00 0.00 2.41
51 52 3.694566 CCCCAAAGCCTATTGTCTTACAC 59.305 47.826 0.00 0.00 0.00 2.90
52 53 4.331968 CCCAAAGCCTATTGTCTTACACA 58.668 43.478 0.00 0.00 0.00 3.72
76 77 5.688220 AGGGAGAGATATAAAGAGGACCA 57.312 43.478 0.00 0.00 0.00 4.02
93 100 1.004394 ACCAGACCTCCGGATTTTTCC 59.996 52.381 3.57 0.00 0.00 3.13
127 136 2.036475 CTCTCTCTCTCTCTCTCGGAGG 59.964 59.091 4.96 0.00 42.10 4.30
145 154 1.080434 GAGCACCGCTCGACTCTTT 60.080 57.895 0.00 0.00 45.85 2.52
197 206 2.432300 GGATCTCCGGGCGAAGGAA 61.432 63.158 0.00 0.00 37.32 3.36
235 244 4.066139 GCTGGGCCCCATTCTGGT 62.066 66.667 22.27 0.00 35.17 4.00
236 245 2.276740 CTGGGCCCCATTCTGGTC 59.723 66.667 22.27 0.00 35.17 4.02
237 246 3.704231 CTGGGCCCCATTCTGGTCG 62.704 68.421 22.27 0.00 35.17 4.79
239 248 4.424711 GGCCCCATTCTGGTCGCA 62.425 66.667 0.00 0.00 35.17 5.10
241 250 2.989639 CCCCATTCTGGTCGCAGA 59.010 61.111 0.00 0.00 35.17 4.26
251 260 4.561731 GTCGCAGAGACCTGTCAC 57.438 61.111 0.00 0.00 43.95 3.67
258 267 2.924454 GCAGAGACCTGTCACTTCTTCG 60.924 54.545 0.00 0.00 42.35 3.79
265 274 3.258372 ACCTGTCACTTCTTCGAGCATTA 59.742 43.478 0.00 0.00 0.00 1.90
266 275 3.862267 CCTGTCACTTCTTCGAGCATTAG 59.138 47.826 0.00 0.00 0.00 1.73
267 276 4.489810 CTGTCACTTCTTCGAGCATTAGT 58.510 43.478 0.00 0.00 0.00 2.24
268 277 4.883083 TGTCACTTCTTCGAGCATTAGTT 58.117 39.130 0.00 0.00 0.00 2.24
381 390 1.230635 GCTTTCGCCTTCTCTGCACA 61.231 55.000 0.00 0.00 0.00 4.57
433 442 2.564458 CGCCCGGCTTGGTTTTAC 59.436 61.111 8.05 0.00 35.15 2.01
476 485 5.697067 ACTGTTTAGGTGTATGTTGGGAAA 58.303 37.500 0.00 0.00 0.00 3.13
501 510 5.221244 GGAGTTGGTGTTGCTTAGTTTCATT 60.221 40.000 0.00 0.00 0.00 2.57
510 519 6.542005 TGTTGCTTAGTTTCATTCTCTGAACA 59.458 34.615 0.00 0.00 43.54 3.18
515 524 5.429957 AGTTTCATTCTCTGAACAACTGC 57.570 39.130 0.00 0.00 43.54 4.40
569 578 1.209019 GGAGCTTCAGATTCAGCTGGA 59.791 52.381 15.13 5.14 46.72 3.86
689 702 4.513442 TCAACTTTACCCTCCGATTGATG 58.487 43.478 0.00 0.00 0.00 3.07
695 708 3.268023 ACCCTCCGATTGATGAAGTTC 57.732 47.619 0.00 0.00 0.00 3.01
735 748 6.553524 ACATGCAAAGTGGAAAACATTTTTG 58.446 32.000 0.00 0.00 36.95 2.44
737 750 7.335422 ACATGCAAAGTGGAAAACATTTTTGTA 59.665 29.630 0.00 0.00 36.95 2.41
767 780 4.485163 AGTTAAAATGGCGTTTCATCAGC 58.515 39.130 4.95 0.00 0.00 4.26
831 844 6.635755 TGACCTGTTAAAACTTGGAAAAAGG 58.364 36.000 10.76 0.00 0.00 3.11
852 866 5.203528 AGGTGACATATGGAAGAAAATGGG 58.796 41.667 7.80 0.00 0.00 4.00
1051 1065 1.083806 TTGCTTGCCTACGCTGATCG 61.084 55.000 0.00 0.00 45.38 3.69
1131 1145 4.154195 GCGACCAGTGATGAGTTTATTTGT 59.846 41.667 0.00 0.00 0.00 2.83
1228 1242 2.196595 TGGTAGGTCCTGAATCCCAAG 58.803 52.381 0.00 0.00 37.07 3.61
1433 1974 1.266178 GTTCCCCCACCTTTCAATGG 58.734 55.000 0.00 0.00 35.59 3.16
1593 2134 4.661222 TGCCACTCAAATATCCTTGTGAA 58.339 39.130 0.00 0.00 0.00 3.18
1628 2171 5.220586 GCAAGTTTTTCCTTTTTGTGTAGCC 60.221 40.000 0.00 0.00 0.00 3.93
1640 2183 2.846193 TGTGTAGCCAGTTTCTTCACC 58.154 47.619 0.00 0.00 32.91 4.02
2250 2794 2.009774 CAACGCTCAGGAGTTTATGGG 58.990 52.381 0.00 0.00 33.39 4.00
2251 2795 0.541863 ACGCTCAGGAGTTTATGGGG 59.458 55.000 0.00 0.00 0.00 4.96
2767 3311 1.568504 TAGAATCTTGGACCCGCAGT 58.431 50.000 0.00 0.00 0.00 4.40
2958 3502 2.533266 ATGACTATCACGGCCATCAC 57.467 50.000 2.24 0.00 0.00 3.06
3181 3725 5.707411 AACATACTTTACCGTTCGCATAC 57.293 39.130 0.00 0.00 0.00 2.39
3656 4211 2.177531 CGCACCATGCTGCTGAAC 59.822 61.111 11.11 0.00 42.25 3.18
3680 4235 1.204467 GTTCCTCTGGAGCTCACTGAG 59.796 57.143 17.19 20.08 31.21 3.35
3728 4283 0.662619 TGCAAGTTTCTGCCAGTTCG 59.337 50.000 0.00 0.00 41.90 3.95
3743 4298 0.594028 GTTCGCCGATCTATGTCGCA 60.594 55.000 0.00 0.00 40.17 5.10
3761 4316 1.228552 ACCGCTGTCCATTGCCTTT 60.229 52.632 0.00 0.00 0.00 3.11
3858 4413 7.762382 AGTTTTTCAGCTACAACAATATAGCC 58.238 34.615 0.00 0.00 44.10 3.93
3861 4416 4.960938 TCAGCTACAACAATATAGCCCTG 58.039 43.478 0.00 0.00 44.10 4.45
3862 4417 4.653801 TCAGCTACAACAATATAGCCCTGA 59.346 41.667 0.00 0.00 44.10 3.86
3869 4424 6.058183 ACAACAATATAGCCCTGATCAACTC 58.942 40.000 0.00 0.00 0.00 3.01
3873 4428 6.784969 ACAATATAGCCCTGATCAACTCTACT 59.215 38.462 0.00 0.00 0.00 2.57
3975 4530 6.045955 AGCTCGAAAACTTTCTCCTGATATC 58.954 40.000 0.00 0.00 35.07 1.63
4006 4561 6.432403 ACTTTCAGAAAGAGATTGTCTCCT 57.568 37.500 26.72 0.00 44.42 3.69
4007 4562 7.546250 ACTTTCAGAAAGAGATTGTCTCCTA 57.454 36.000 26.72 0.00 44.42 2.94
4008 4563 7.382898 ACTTTCAGAAAGAGATTGTCTCCTAC 58.617 38.462 26.72 0.00 44.42 3.18
4009 4564 7.234577 ACTTTCAGAAAGAGATTGTCTCCTACT 59.765 37.037 26.72 0.00 44.42 2.57
4010 4565 6.767524 TCAGAAAGAGATTGTCTCCTACTC 57.232 41.667 3.47 0.00 44.42 2.59
4011 4566 5.654650 TCAGAAAGAGATTGTCTCCTACTCC 59.345 44.000 3.47 0.00 44.42 3.85
4012 4567 4.959839 AGAAAGAGATTGTCTCCTACTCCC 59.040 45.833 3.47 0.00 44.42 4.30
4013 4568 4.618378 AAGAGATTGTCTCCTACTCCCT 57.382 45.455 3.47 0.00 44.42 4.20
4014 4569 4.178956 AGAGATTGTCTCCTACTCCCTC 57.821 50.000 3.47 0.00 44.42 4.30
4015 4570 3.791545 AGAGATTGTCTCCTACTCCCTCT 59.208 47.826 3.47 0.00 44.42 3.69
4016 4571 4.979039 AGAGATTGTCTCCTACTCCCTCTA 59.021 45.833 3.47 0.00 44.42 2.43
4017 4572 5.615261 AGAGATTGTCTCCTACTCCCTCTAT 59.385 44.000 3.47 0.00 44.42 1.98
4018 4573 6.795507 AGAGATTGTCTCCTACTCCCTCTATA 59.204 42.308 3.47 0.00 44.42 1.31
4019 4574 7.296150 AGAGATTGTCTCCTACTCCCTCTATAA 59.704 40.741 3.47 0.00 44.42 0.98
4020 4575 7.827787 AGATTGTCTCCTACTCCCTCTATAAA 58.172 38.462 0.00 0.00 0.00 1.40
4021 4576 7.947890 AGATTGTCTCCTACTCCCTCTATAAAG 59.052 40.741 0.00 0.00 0.00 1.85
4022 4577 6.843473 TGTCTCCTACTCCCTCTATAAAGA 57.157 41.667 0.00 0.00 0.00 2.52
4023 4578 7.222180 TGTCTCCTACTCCCTCTATAAAGAA 57.778 40.000 0.00 0.00 0.00 2.52
4024 4579 7.649715 TGTCTCCTACTCCCTCTATAAAGAAA 58.350 38.462 0.00 0.00 0.00 2.52
4025 4580 8.290277 TGTCTCCTACTCCCTCTATAAAGAAAT 58.710 37.037 0.00 0.00 0.00 2.17
4026 4581 9.810870 GTCTCCTACTCCCTCTATAAAGAAATA 57.189 37.037 0.00 0.00 0.00 1.40
4034 4589 9.796120 CTCCCTCTATAAAGAAATATAAGAGCG 57.204 37.037 0.00 0.00 0.00 5.03
4035 4590 9.310449 TCCCTCTATAAAGAAATATAAGAGCGT 57.690 33.333 0.00 0.00 0.00 5.07
4036 4591 9.930693 CCCTCTATAAAGAAATATAAGAGCGTT 57.069 33.333 0.00 0.00 0.00 4.84
4055 4610 5.643339 CGTTTAGATCGCTAAATGCTCTT 57.357 39.130 0.00 0.00 45.47 2.85
4056 4611 6.749216 CGTTTAGATCGCTAAATGCTCTTA 57.251 37.500 0.00 0.00 45.47 2.10
4057 4612 7.339732 CGTTTAGATCGCTAAATGCTCTTAT 57.660 36.000 0.00 0.00 45.47 1.73
4058 4613 8.449085 CGTTTAGATCGCTAAATGCTCTTATA 57.551 34.615 0.00 0.00 45.47 0.98
4059 4614 9.077674 CGTTTAGATCGCTAAATGCTCTTATAT 57.922 33.333 0.00 0.00 45.47 0.86
4064 4619 9.717942 AGATCGCTAAATGCTCTTATATTTCTT 57.282 29.630 0.00 0.00 40.11 2.52
4073 4628 9.566432 AATGCTCTTATATTTCTTTACAGAGGG 57.434 33.333 0.00 0.00 0.00 4.30
4074 4629 8.319057 TGCTCTTATATTTCTTTACAGAGGGA 57.681 34.615 0.00 0.00 0.00 4.20
4075 4630 8.768397 TGCTCTTATATTTCTTTACAGAGGGAA 58.232 33.333 0.00 0.00 0.00 3.97
4154 4737 0.774276 TCAACCCACCAACCAGCATA 59.226 50.000 0.00 0.00 0.00 3.14
4165 4748 3.181507 CCAACCAGCATACATTGAAGTCG 60.182 47.826 0.00 0.00 0.00 4.18
4166 4749 2.009774 ACCAGCATACATTGAAGTCGC 58.990 47.619 0.00 0.00 0.00 5.19
4173 4756 2.175878 ACATTGAAGTCGCTGCTTCT 57.824 45.000 15.06 0.00 43.74 2.85
4177 4760 3.386768 TTGAAGTCGCTGCTTCTACTT 57.613 42.857 15.06 2.36 43.74 2.24
4188 4771 6.365247 TCGCTGCTTCTACTTTAAACACTAAG 59.635 38.462 0.00 0.00 0.00 2.18
4189 4772 6.307915 GCTGCTTCTACTTTAAACACTAAGC 58.692 40.000 11.12 11.12 38.78 3.09
4190 4773 6.147985 GCTGCTTCTACTTTAAACACTAAGCT 59.852 38.462 15.83 0.00 39.02 3.74
4191 4774 7.421530 TGCTTCTACTTTAAACACTAAGCTG 57.578 36.000 15.83 0.00 39.02 4.24
4192 4775 6.426937 TGCTTCTACTTTAAACACTAAGCTGG 59.573 38.462 15.83 0.00 39.02 4.85
4193 4776 6.620949 GCTTCTACTTTAAACACTAAGCTGGC 60.621 42.308 10.90 0.00 36.16 4.85
4194 4777 5.243207 TCTACTTTAAACACTAAGCTGGCC 58.757 41.667 0.00 0.00 0.00 5.36
4195 4778 4.100279 ACTTTAAACACTAAGCTGGCCT 57.900 40.909 3.32 0.00 0.00 5.19
4196 4779 4.470602 ACTTTAAACACTAAGCTGGCCTT 58.529 39.130 3.32 0.00 37.57 4.35
4197 4780 4.893524 ACTTTAAACACTAAGCTGGCCTTT 59.106 37.500 3.32 0.00 34.95 3.11
4198 4781 4.846779 TTAAACACTAAGCTGGCCTTTG 57.153 40.909 3.32 0.00 34.95 2.77
4199 4782 2.364972 AACACTAAGCTGGCCTTTGT 57.635 45.000 3.32 0.00 39.56 2.83
4200 4783 2.364972 ACACTAAGCTGGCCTTTGTT 57.635 45.000 3.32 0.00 37.40 2.83
4201 4784 2.666317 ACACTAAGCTGGCCTTTGTTT 58.334 42.857 3.32 1.23 37.40 2.83
4202 4785 2.362077 ACACTAAGCTGGCCTTTGTTTG 59.638 45.455 3.32 0.00 37.40 2.93
4203 4786 2.622942 CACTAAGCTGGCCTTTGTTTGA 59.377 45.455 3.32 0.00 37.40 2.69
4204 4787 2.887152 ACTAAGCTGGCCTTTGTTTGAG 59.113 45.455 3.32 0.00 36.34 3.02
4205 4788 0.390492 AAGCTGGCCTTTGTTTGAGC 59.610 50.000 3.32 0.95 0.00 4.26
4206 4789 0.468771 AGCTGGCCTTTGTTTGAGCT 60.469 50.000 3.32 3.85 31.93 4.09
4207 4790 0.319297 GCTGGCCTTTGTTTGAGCTG 60.319 55.000 3.32 0.00 0.00 4.24
4208 4791 0.319297 CTGGCCTTTGTTTGAGCTGC 60.319 55.000 3.32 0.00 0.00 5.25
4209 4792 1.042003 TGGCCTTTGTTTGAGCTGCA 61.042 50.000 3.32 0.00 0.00 4.41
4210 4793 0.319297 GGCCTTTGTTTGAGCTGCAG 60.319 55.000 10.11 10.11 0.00 4.41
4211 4794 0.942884 GCCTTTGTTTGAGCTGCAGC 60.943 55.000 31.53 31.53 42.49 5.25
4223 4806 1.207390 GCTGCAGCTACTGATTCTCG 58.793 55.000 31.33 0.00 38.21 4.04
4224 4807 1.850377 CTGCAGCTACTGATTCTCGG 58.150 55.000 0.00 0.00 32.44 4.63
4225 4808 1.406898 CTGCAGCTACTGATTCTCGGA 59.593 52.381 0.00 0.00 32.44 4.55
4226 4809 1.135139 TGCAGCTACTGATTCTCGGAC 59.865 52.381 0.00 0.00 32.44 4.79
4227 4810 1.407258 GCAGCTACTGATTCTCGGACT 59.593 52.381 0.00 0.00 32.44 3.85
4228 4811 2.542824 GCAGCTACTGATTCTCGGACTC 60.543 54.545 0.00 0.00 32.44 3.36
4229 4812 2.948979 CAGCTACTGATTCTCGGACTCT 59.051 50.000 0.00 0.00 32.44 3.24
4230 4813 4.130857 CAGCTACTGATTCTCGGACTCTA 58.869 47.826 0.00 0.00 32.44 2.43
4231 4814 4.213270 CAGCTACTGATTCTCGGACTCTAG 59.787 50.000 0.00 0.00 32.44 2.43
4232 4815 3.500680 GCTACTGATTCTCGGACTCTAGG 59.499 52.174 0.00 0.00 0.00 3.02
4233 4816 2.303175 ACTGATTCTCGGACTCTAGGC 58.697 52.381 0.00 0.00 0.00 3.93
4234 4817 1.611491 CTGATTCTCGGACTCTAGGCC 59.389 57.143 0.00 0.00 0.00 5.19
4235 4818 1.215673 TGATTCTCGGACTCTAGGCCT 59.784 52.381 11.78 11.78 0.00 5.19
4236 4819 2.312390 GATTCTCGGACTCTAGGCCTT 58.688 52.381 12.58 0.00 0.00 4.35
4237 4820 1.765230 TTCTCGGACTCTAGGCCTTC 58.235 55.000 12.58 0.86 0.00 3.46
4238 4821 0.106619 TCTCGGACTCTAGGCCTTCC 60.107 60.000 12.58 11.46 0.00 3.46
4239 4822 0.395862 CTCGGACTCTAGGCCTTCCA 60.396 60.000 12.58 1.89 33.74 3.53
4240 4823 0.040646 TCGGACTCTAGGCCTTCCAA 59.959 55.000 12.58 0.00 33.74 3.53
4241 4824 0.902531 CGGACTCTAGGCCTTCCAAA 59.097 55.000 12.58 0.00 33.74 3.28
4242 4825 1.278127 CGGACTCTAGGCCTTCCAAAA 59.722 52.381 12.58 0.00 33.74 2.44
4243 4826 2.092914 CGGACTCTAGGCCTTCCAAAAT 60.093 50.000 12.58 0.00 33.74 1.82
4244 4827 3.546724 GGACTCTAGGCCTTCCAAAATC 58.453 50.000 12.58 0.00 33.74 2.17
4245 4828 3.546724 GACTCTAGGCCTTCCAAAATCC 58.453 50.000 12.58 0.00 33.74 3.01
4246 4829 2.092914 ACTCTAGGCCTTCCAAAATCCG 60.093 50.000 12.58 0.00 33.74 4.18
4247 4830 2.170607 CTCTAGGCCTTCCAAAATCCGA 59.829 50.000 12.58 0.00 33.74 4.55
4248 4831 2.574369 TCTAGGCCTTCCAAAATCCGAA 59.426 45.455 12.58 0.00 33.74 4.30
4249 4832 2.532250 AGGCCTTCCAAAATCCGAAT 57.468 45.000 0.00 0.00 33.74 3.34
4250 4833 2.379005 AGGCCTTCCAAAATCCGAATC 58.621 47.619 0.00 0.00 33.74 2.52
4251 4834 2.024941 AGGCCTTCCAAAATCCGAATCT 60.025 45.455 0.00 0.00 33.74 2.40
4252 4835 2.359214 GGCCTTCCAAAATCCGAATCTC 59.641 50.000 0.00 0.00 0.00 2.75
4253 4836 3.016736 GCCTTCCAAAATCCGAATCTCA 58.983 45.455 0.00 0.00 0.00 3.27
4254 4837 3.443681 GCCTTCCAAAATCCGAATCTCAA 59.556 43.478 0.00 0.00 0.00 3.02
4255 4838 4.082245 GCCTTCCAAAATCCGAATCTCAAA 60.082 41.667 0.00 0.00 0.00 2.69
4256 4839 5.402398 CCTTCCAAAATCCGAATCTCAAAC 58.598 41.667 0.00 0.00 0.00 2.93
4257 4840 5.048083 CCTTCCAAAATCCGAATCTCAAACA 60.048 40.000 0.00 0.00 0.00 2.83
4258 4841 6.398234 TTCCAAAATCCGAATCTCAAACAA 57.602 33.333 0.00 0.00 0.00 2.83
4259 4842 6.398234 TCCAAAATCCGAATCTCAAACAAA 57.602 33.333 0.00 0.00 0.00 2.83
4260 4843 6.212955 TCCAAAATCCGAATCTCAAACAAAC 58.787 36.000 0.00 0.00 0.00 2.93
4261 4844 5.982516 CCAAAATCCGAATCTCAAACAAACA 59.017 36.000 0.00 0.00 0.00 2.83
4262 4845 6.074356 CCAAAATCCGAATCTCAAACAAACAC 60.074 38.462 0.00 0.00 0.00 3.32
4263 4846 5.766150 AATCCGAATCTCAAACAAACACA 57.234 34.783 0.00 0.00 0.00 3.72
4264 4847 5.964958 ATCCGAATCTCAAACAAACACAT 57.035 34.783 0.00 0.00 0.00 3.21
4265 4848 5.356882 TCCGAATCTCAAACAAACACATC 57.643 39.130 0.00 0.00 0.00 3.06
4266 4849 4.819088 TCCGAATCTCAAACAAACACATCA 59.181 37.500 0.00 0.00 0.00 3.07
4267 4850 5.049474 TCCGAATCTCAAACAAACACATCAG 60.049 40.000 0.00 0.00 0.00 2.90
4268 4851 5.049474 CCGAATCTCAAACAAACACATCAGA 60.049 40.000 0.00 0.00 0.00 3.27
4269 4852 6.348786 CCGAATCTCAAACAAACACATCAGAT 60.349 38.462 0.00 0.00 0.00 2.90
4270 4853 7.080099 CGAATCTCAAACAAACACATCAGATT 58.920 34.615 0.00 0.00 33.12 2.40
4271 4854 7.269937 CGAATCTCAAACAAACACATCAGATTC 59.730 37.037 7.86 7.86 40.46 2.52
4272 4855 6.317789 TCTCAAACAAACACATCAGATTCC 57.682 37.500 0.00 0.00 0.00 3.01
4273 4856 5.827267 TCTCAAACAAACACATCAGATTCCA 59.173 36.000 0.00 0.00 0.00 3.53
4274 4857 6.320926 TCTCAAACAAACACATCAGATTCCAA 59.679 34.615 0.00 0.00 0.00 3.53
4275 4858 6.506147 TCAAACAAACACATCAGATTCCAAG 58.494 36.000 0.00 0.00 0.00 3.61
4276 4859 4.510038 ACAAACACATCAGATTCCAAGC 57.490 40.909 0.00 0.00 0.00 4.01
4277 4860 4.147321 ACAAACACATCAGATTCCAAGCT 58.853 39.130 0.00 0.00 0.00 3.74
4278 4861 5.316167 ACAAACACATCAGATTCCAAGCTA 58.684 37.500 0.00 0.00 0.00 3.32
4279 4862 5.413833 ACAAACACATCAGATTCCAAGCTAG 59.586 40.000 0.00 0.00 0.00 3.42
4280 4863 3.539604 ACACATCAGATTCCAAGCTAGC 58.460 45.455 6.62 6.62 0.00 3.42
4281 4864 3.199508 ACACATCAGATTCCAAGCTAGCT 59.800 43.478 12.68 12.68 0.00 3.32
4282 4865 4.197750 CACATCAGATTCCAAGCTAGCTT 58.802 43.478 24.42 24.42 36.60 3.74
4293 4876 3.711086 CAAGCTAGCTTGCTAGAATCGA 58.289 45.455 37.13 0.00 45.38 3.59
4294 4877 4.305769 CAAGCTAGCTTGCTAGAATCGAT 58.694 43.478 37.13 7.69 45.38 3.59
4295 4878 4.599047 AGCTAGCTTGCTAGAATCGATT 57.401 40.909 27.72 11.20 42.10 3.34
4296 4879 4.555262 AGCTAGCTTGCTAGAATCGATTC 58.445 43.478 27.16 27.16 42.10 2.52
4297 4880 5.221422 AAGCTAGCTTGCTAGAATCGATTCT 60.221 40.000 35.72 35.72 43.24 2.40
4298 4881 5.475220 AGCTAGCTTGCTAGAATCGATTCTA 59.525 40.000 34.44 34.44 45.71 2.10
4299 4882 5.571357 GCTAGCTTGCTAGAATCGATTCTAC 59.429 44.000 33.81 28.82 44.80 2.59
4300 4883 5.521906 AGCTTGCTAGAATCGATTCTACA 57.478 39.130 33.81 30.38 44.80 2.74
4301 4884 5.907207 AGCTTGCTAGAATCGATTCTACAA 58.093 37.500 33.81 33.05 44.80 2.41
4302 4885 6.341316 AGCTTGCTAGAATCGATTCTACAAA 58.659 36.000 33.20 28.81 44.80 2.83
4303 4886 6.256757 AGCTTGCTAGAATCGATTCTACAAAC 59.743 38.462 33.20 31.05 44.80 2.93
4304 4887 6.256757 GCTTGCTAGAATCGATTCTACAAACT 59.743 38.462 33.20 21.47 44.80 2.66
4305 4888 7.201565 GCTTGCTAGAATCGATTCTACAAACTT 60.202 37.037 33.20 20.99 44.80 2.66
4306 4889 9.302345 CTTGCTAGAATCGATTCTACAAACTTA 57.698 33.333 33.20 23.60 44.80 2.24
4307 4890 9.647797 TTGCTAGAATCGATTCTACAAACTTAA 57.352 29.630 32.72 22.14 44.80 1.85
4308 4891 9.084164 TGCTAGAATCGATTCTACAAACTTAAC 57.916 33.333 33.81 16.66 44.80 2.01
4309 4892 9.303537 GCTAGAATCGATTCTACAAACTTAACT 57.696 33.333 33.81 15.63 44.80 2.24
4312 4895 9.583765 AGAATCGATTCTACAAACTTAACTACC 57.416 33.333 33.79 5.86 44.80 3.18
4313 4896 9.362539 GAATCGATTCTACAAACTTAACTACCA 57.637 33.333 27.15 0.00 34.05 3.25
4314 4897 8.928270 ATCGATTCTACAAACTTAACTACCAG 57.072 34.615 0.00 0.00 0.00 4.00
4315 4898 7.318141 TCGATTCTACAAACTTAACTACCAGG 58.682 38.462 0.00 0.00 0.00 4.45
4316 4899 6.035758 CGATTCTACAAACTTAACTACCAGGC 59.964 42.308 0.00 0.00 0.00 4.85
4317 4900 5.811796 TCTACAAACTTAACTACCAGGCA 57.188 39.130 0.00 0.00 0.00 4.75
4318 4901 6.177310 TCTACAAACTTAACTACCAGGCAA 57.823 37.500 0.00 0.00 0.00 4.52
4319 4902 6.228258 TCTACAAACTTAACTACCAGGCAAG 58.772 40.000 0.00 0.00 0.00 4.01
4320 4903 5.043737 ACAAACTTAACTACCAGGCAAGA 57.956 39.130 0.00 0.00 0.00 3.02
4321 4904 5.063880 ACAAACTTAACTACCAGGCAAGAG 58.936 41.667 0.00 0.00 0.00 2.85
4322 4905 5.163237 ACAAACTTAACTACCAGGCAAGAGA 60.163 40.000 0.00 0.00 0.00 3.10
4323 4906 5.562298 AACTTAACTACCAGGCAAGAGAA 57.438 39.130 0.00 0.00 0.00 2.87
4324 4907 5.763876 ACTTAACTACCAGGCAAGAGAAT 57.236 39.130 0.00 0.00 0.00 2.40
4325 4908 5.735766 ACTTAACTACCAGGCAAGAGAATC 58.264 41.667 0.00 0.00 0.00 2.52
4326 4909 3.636153 AACTACCAGGCAAGAGAATCC 57.364 47.619 0.00 0.00 33.66 3.01
4327 4910 1.482593 ACTACCAGGCAAGAGAATCCG 59.517 52.381 0.00 0.00 33.66 4.18
4328 4911 0.830648 TACCAGGCAAGAGAATCCGG 59.169 55.000 0.00 0.00 33.66 5.14
4329 4912 0.909610 ACCAGGCAAGAGAATCCGGA 60.910 55.000 6.61 6.61 33.66 5.14
4330 4913 0.253044 CCAGGCAAGAGAATCCGGAA 59.747 55.000 9.01 0.00 33.66 4.30
4331 4914 1.661341 CAGGCAAGAGAATCCGGAAG 58.339 55.000 9.01 0.00 33.66 3.46
4332 4915 0.107459 AGGCAAGAGAATCCGGAAGC 60.107 55.000 9.01 2.96 33.66 3.86
4333 4916 0.107459 GGCAAGAGAATCCGGAAGCT 60.107 55.000 9.01 9.00 33.66 3.74
4334 4917 1.012841 GCAAGAGAATCCGGAAGCTG 58.987 55.000 9.01 1.40 33.66 4.24
4335 4918 1.012841 CAAGAGAATCCGGAAGCTGC 58.987 55.000 9.01 3.53 33.66 5.25
4336 4919 0.460987 AAGAGAATCCGGAAGCTGCG 60.461 55.000 9.01 0.00 33.66 5.18
4337 4920 1.141881 GAGAATCCGGAAGCTGCGA 59.858 57.895 9.01 0.00 30.86 5.10
4338 4921 0.249657 GAGAATCCGGAAGCTGCGAT 60.250 55.000 9.01 0.00 30.86 4.58
4339 4922 0.179000 AGAATCCGGAAGCTGCGATT 59.821 50.000 9.01 0.00 30.86 3.34
4340 4923 1.017387 GAATCCGGAAGCTGCGATTT 58.983 50.000 9.01 0.00 30.86 2.17
4341 4924 1.401905 GAATCCGGAAGCTGCGATTTT 59.598 47.619 9.01 0.00 30.86 1.82
4342 4925 0.734889 ATCCGGAAGCTGCGATTTTG 59.265 50.000 9.01 0.00 30.86 2.44
4343 4926 1.137404 CCGGAAGCTGCGATTTTGG 59.863 57.895 0.00 0.00 30.86 3.28
4344 4927 1.586154 CCGGAAGCTGCGATTTTGGT 61.586 55.000 0.00 0.00 30.86 3.67
4345 4928 0.454957 CGGAAGCTGCGATTTTGGTG 60.455 55.000 0.00 0.00 30.86 4.17
4346 4929 0.881118 GGAAGCTGCGATTTTGGTGA 59.119 50.000 0.00 0.00 0.00 4.02
4347 4930 1.474077 GGAAGCTGCGATTTTGGTGAT 59.526 47.619 0.00 0.00 0.00 3.06
4348 4931 2.094545 GGAAGCTGCGATTTTGGTGATT 60.095 45.455 0.00 0.00 0.00 2.57
4349 4932 2.927553 AGCTGCGATTTTGGTGATTC 57.072 45.000 0.00 0.00 0.00 2.52
4350 4933 2.161855 AGCTGCGATTTTGGTGATTCA 58.838 42.857 0.00 0.00 0.00 2.57
4351 4934 2.163010 AGCTGCGATTTTGGTGATTCAG 59.837 45.455 0.00 0.00 0.00 3.02
4352 4935 2.523015 CTGCGATTTTGGTGATTCAGC 58.477 47.619 8.91 8.91 0.00 4.26
4353 4936 1.202114 TGCGATTTTGGTGATTCAGCC 59.798 47.619 12.99 5.97 0.00 4.85
4354 4937 1.202114 GCGATTTTGGTGATTCAGCCA 59.798 47.619 12.99 8.34 0.00 4.75
4355 4938 2.352617 GCGATTTTGGTGATTCAGCCAA 60.353 45.455 12.99 13.22 42.38 4.52
4356 4939 3.676873 GCGATTTTGGTGATTCAGCCAAT 60.677 43.478 12.99 10.79 43.38 3.16
4357 4940 4.497300 CGATTTTGGTGATTCAGCCAATT 58.503 39.130 12.99 5.30 43.38 2.32
4358 4941 4.563976 CGATTTTGGTGATTCAGCCAATTC 59.436 41.667 12.99 12.12 43.38 2.17
4359 4942 5.622914 CGATTTTGGTGATTCAGCCAATTCT 60.623 40.000 12.99 5.67 43.38 2.40
4360 4943 4.524316 TTTGGTGATTCAGCCAATTCTG 57.476 40.909 12.99 0.00 43.38 3.02
4361 4944 1.820519 TGGTGATTCAGCCAATTCTGC 59.179 47.619 12.99 0.00 34.19 4.26
4362 4945 1.820519 GGTGATTCAGCCAATTCTGCA 59.179 47.619 4.48 0.00 34.19 4.41
4363 4946 2.159282 GGTGATTCAGCCAATTCTGCAG 60.159 50.000 7.63 7.63 34.19 4.41
4364 4947 1.475280 TGATTCAGCCAATTCTGCAGC 59.525 47.619 9.47 0.00 34.19 5.25
4365 4948 1.749634 GATTCAGCCAATTCTGCAGCT 59.250 47.619 9.47 0.00 35.52 4.24
4366 4949 1.624336 TTCAGCCAATTCTGCAGCTT 58.376 45.000 9.47 1.83 31.93 3.74
4367 4950 1.171308 TCAGCCAATTCTGCAGCTTC 58.829 50.000 9.47 0.00 31.93 3.86
4368 4951 0.172803 CAGCCAATTCTGCAGCTTCC 59.827 55.000 9.47 0.00 31.93 3.46
4369 4952 0.969409 AGCCAATTCTGCAGCTTCCC 60.969 55.000 9.47 0.00 29.27 3.97
4370 4953 1.252904 GCCAATTCTGCAGCTTCCCA 61.253 55.000 9.47 0.00 0.00 4.37
4371 4954 0.529378 CCAATTCTGCAGCTTCCCAC 59.471 55.000 9.47 0.00 0.00 4.61
4372 4955 1.250328 CAATTCTGCAGCTTCCCACA 58.750 50.000 9.47 0.00 0.00 4.17
4373 4956 1.614903 CAATTCTGCAGCTTCCCACAA 59.385 47.619 9.47 0.00 0.00 3.33
4374 4957 1.999648 ATTCTGCAGCTTCCCACAAA 58.000 45.000 9.47 0.00 0.00 2.83
4375 4958 1.774110 TTCTGCAGCTTCCCACAAAA 58.226 45.000 9.47 0.00 0.00 2.44
4376 4959 1.321474 TCTGCAGCTTCCCACAAAAG 58.679 50.000 9.47 0.00 0.00 2.27
4377 4960 1.133823 TCTGCAGCTTCCCACAAAAGA 60.134 47.619 9.47 0.00 0.00 2.52
4378 4961 1.682854 CTGCAGCTTCCCACAAAAGAA 59.317 47.619 0.00 0.00 0.00 2.52
4379 4962 2.101249 CTGCAGCTTCCCACAAAAGAAA 59.899 45.455 0.00 0.00 0.00 2.52
4380 4963 2.499289 TGCAGCTTCCCACAAAAGAAAA 59.501 40.909 0.00 0.00 0.00 2.29
4381 4964 2.866156 GCAGCTTCCCACAAAAGAAAAC 59.134 45.455 0.00 0.00 0.00 2.43
4382 4965 3.115554 CAGCTTCCCACAAAAGAAAACG 58.884 45.455 0.00 0.00 0.00 3.60
4383 4966 2.100749 AGCTTCCCACAAAAGAAAACGG 59.899 45.455 0.00 0.00 0.00 4.44
4384 4967 2.159156 GCTTCCCACAAAAGAAAACGGT 60.159 45.455 0.00 0.00 0.00 4.83
4385 4968 3.677700 GCTTCCCACAAAAGAAAACGGTT 60.678 43.478 0.00 0.00 0.00 4.44
4386 4969 3.786516 TCCCACAAAAGAAAACGGTTC 57.213 42.857 0.00 0.00 0.00 3.62
4387 4970 3.090037 TCCCACAAAAGAAAACGGTTCA 58.910 40.909 0.00 0.00 0.00 3.18
4388 4971 3.129638 TCCCACAAAAGAAAACGGTTCAG 59.870 43.478 0.00 0.00 0.00 3.02
4389 4972 3.119280 CCCACAAAAGAAAACGGTTCAGT 60.119 43.478 0.00 0.00 0.00 3.41
4390 4973 4.490743 CCACAAAAGAAAACGGTTCAGTT 58.509 39.130 0.00 0.00 35.59 3.16
4391 4974 4.926832 CCACAAAAGAAAACGGTTCAGTTT 59.073 37.500 0.00 0.00 45.21 2.66
4392 4975 5.164002 CCACAAAAGAAAACGGTTCAGTTTG 60.164 40.000 18.40 18.40 42.81 2.93
4393 4976 5.631512 CACAAAAGAAAACGGTTCAGTTTGA 59.368 36.000 22.67 0.00 42.81 2.69
4394 4977 5.861787 ACAAAAGAAAACGGTTCAGTTTGAG 59.138 36.000 22.67 9.61 42.81 3.02
4395 4978 3.692791 AGAAAACGGTTCAGTTTGAGC 57.307 42.857 0.00 0.00 42.81 4.26
4396 4979 2.357952 AGAAAACGGTTCAGTTTGAGCC 59.642 45.455 0.00 2.24 43.33 4.70
4397 4980 1.029681 AAACGGTTCAGTTTGAGCCC 58.970 50.000 6.40 0.00 43.80 5.19
4398 4981 0.182775 AACGGTTCAGTTTGAGCCCT 59.817 50.000 6.40 0.00 43.80 5.19
4399 4982 0.182775 ACGGTTCAGTTTGAGCCCTT 59.817 50.000 6.40 0.00 43.80 3.95
4400 4983 0.593128 CGGTTCAGTTTGAGCCCTTG 59.407 55.000 6.40 0.00 43.80 3.61
4401 4984 0.315251 GGTTCAGTTTGAGCCCTTGC 59.685 55.000 0.94 0.00 41.27 4.01
4402 4985 0.315251 GTTCAGTTTGAGCCCTTGCC 59.685 55.000 0.00 0.00 38.69 4.52
4403 4986 0.827507 TTCAGTTTGAGCCCTTGCCC 60.828 55.000 0.00 0.00 38.69 5.36
4404 4987 2.118294 AGTTTGAGCCCTTGCCCC 59.882 61.111 0.00 0.00 38.69 5.80
4405 4988 2.118294 GTTTGAGCCCTTGCCCCT 59.882 61.111 0.00 0.00 38.69 4.79
4406 4989 2.118076 TTTGAGCCCTTGCCCCTG 59.882 61.111 0.00 0.00 38.69 4.45
4407 4990 2.777960 TTTGAGCCCTTGCCCCTGT 61.778 57.895 0.00 0.00 38.69 4.00
4408 4991 2.310930 TTTGAGCCCTTGCCCCTGTT 62.311 55.000 0.00 0.00 38.69 3.16
4409 4992 2.118294 GAGCCCTTGCCCCTGTTT 59.882 61.111 0.00 0.00 38.69 2.83
4410 4993 1.979155 GAGCCCTTGCCCCTGTTTC 60.979 63.158 0.00 0.00 38.69 2.78
4411 4994 2.997315 GCCCTTGCCCCTGTTTCC 60.997 66.667 0.00 0.00 0.00 3.13
4412 4995 2.525592 CCCTTGCCCCTGTTTCCA 59.474 61.111 0.00 0.00 0.00 3.53
4413 4996 1.607467 CCCTTGCCCCTGTTTCCAG 60.607 63.158 0.00 0.00 38.50 3.86
4414 4997 1.153756 CCTTGCCCCTGTTTCCAGT 59.846 57.895 0.00 0.00 36.95 4.00
4415 4998 0.895559 CCTTGCCCCTGTTTCCAGTC 60.896 60.000 0.00 0.00 36.95 3.51
4416 4999 0.178992 CTTGCCCCTGTTTCCAGTCA 60.179 55.000 0.00 0.00 36.95 3.41
4417 5000 0.260230 TTGCCCCTGTTTCCAGTCAA 59.740 50.000 0.00 0.00 36.95 3.18
4418 5001 0.260230 TGCCCCTGTTTCCAGTCAAA 59.740 50.000 0.00 0.00 36.95 2.69
4419 5002 1.342474 TGCCCCTGTTTCCAGTCAAAA 60.342 47.619 0.00 0.00 36.95 2.44
4420 5003 1.970640 GCCCCTGTTTCCAGTCAAAAT 59.029 47.619 0.00 0.00 36.95 1.82
4421 5004 2.368548 GCCCCTGTTTCCAGTCAAAATT 59.631 45.455 0.00 0.00 36.95 1.82
4422 5005 3.576550 GCCCCTGTTTCCAGTCAAAATTA 59.423 43.478 0.00 0.00 36.95 1.40
4431 5014 8.865090 TGTTTCCAGTCAAAATTACAATATGGT 58.135 29.630 0.00 0.00 0.00 3.55
4572 5165 0.965439 TGGGTGCAAAATGTACAGGC 59.035 50.000 0.33 3.25 34.53 4.85
4581 5174 5.236047 TGCAAAATGTACAGGCATGTTTTTC 59.764 36.000 10.25 0.00 41.01 2.29
4604 5197 4.152223 CGCAAAATCAAAATTTGACCCTCC 59.848 41.667 10.91 0.00 43.48 4.30
4645 5238 3.834813 ACTCACTCTCCAGCAATTACAGA 59.165 43.478 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 0.693049 AACTGGCACAACCCTCTAGG 59.307 55.000 0.00 0.00 38.70 3.02
9 10 1.339151 GGAACTGGCACAACCCTCTAG 60.339 57.143 0.00 0.00 38.70 2.43
10 11 0.690762 GGAACTGGCACAACCCTCTA 59.309 55.000 0.00 0.00 38.70 2.43
11 12 1.456287 GGAACTGGCACAACCCTCT 59.544 57.895 0.00 0.00 38.70 3.69
12 13 1.603739 GGGAACTGGCACAACCCTC 60.604 63.158 9.87 0.00 40.97 4.30
13 14 2.520968 GGGAACTGGCACAACCCT 59.479 61.111 9.87 0.00 40.97 4.34
14 15 2.600470 GGGGAACTGGCACAACCC 60.600 66.667 8.94 8.94 42.53 4.11
15 16 2.600470 GGGGGAACTGGCACAACC 60.600 66.667 0.00 0.00 38.70 3.77
16 17 1.045911 TTTGGGGGAACTGGCACAAC 61.046 55.000 0.00 0.00 38.70 3.32
17 18 0.758685 CTTTGGGGGAACTGGCACAA 60.759 55.000 0.00 0.00 38.70 3.33
18 19 1.152567 CTTTGGGGGAACTGGCACA 60.153 57.895 0.00 0.00 0.00 4.57
19 20 2.574018 GCTTTGGGGGAACTGGCAC 61.574 63.158 0.00 0.00 0.00 5.01
20 21 2.203625 GCTTTGGGGGAACTGGCA 60.204 61.111 0.00 0.00 0.00 4.92
21 22 2.150014 TAGGCTTTGGGGGAACTGGC 62.150 60.000 0.00 0.00 0.00 4.85
22 23 0.631212 ATAGGCTTTGGGGGAACTGG 59.369 55.000 0.00 0.00 0.00 4.00
23 24 2.102578 CAATAGGCTTTGGGGGAACTG 58.897 52.381 0.00 0.00 0.00 3.16
24 25 1.716503 ACAATAGGCTTTGGGGGAACT 59.283 47.619 0.00 0.00 0.00 3.01
25 26 2.100197 GACAATAGGCTTTGGGGGAAC 58.900 52.381 0.00 0.00 0.00 3.62
26 27 2.000048 AGACAATAGGCTTTGGGGGAA 59.000 47.619 0.00 0.00 0.00 3.97
27 28 1.681229 AGACAATAGGCTTTGGGGGA 58.319 50.000 0.00 0.00 0.00 4.81
28 29 2.532250 AAGACAATAGGCTTTGGGGG 57.468 50.000 0.00 0.00 0.00 5.40
29 30 3.694566 GTGTAAGACAATAGGCTTTGGGG 59.305 47.826 0.00 0.00 0.00 4.96
30 31 4.331968 TGTGTAAGACAATAGGCTTTGGG 58.668 43.478 0.00 0.00 0.00 4.12
31 32 5.957842 TTGTGTAAGACAATAGGCTTTGG 57.042 39.130 0.00 0.00 39.78 3.28
32 33 6.381801 CCTTTGTGTAAGACAATAGGCTTTG 58.618 40.000 0.00 0.00 44.23 2.77
33 34 5.476945 CCCTTTGTGTAAGACAATAGGCTTT 59.523 40.000 0.00 0.00 44.23 3.51
34 35 5.010282 CCCTTTGTGTAAGACAATAGGCTT 58.990 41.667 0.00 0.00 44.23 4.35
35 36 4.288626 TCCCTTTGTGTAAGACAATAGGCT 59.711 41.667 0.00 0.00 44.23 4.58
36 37 4.585879 TCCCTTTGTGTAAGACAATAGGC 58.414 43.478 0.00 0.00 44.23 3.93
37 38 6.049955 TCTCCCTTTGTGTAAGACAATAGG 57.950 41.667 0.00 0.00 44.23 2.57
38 39 6.936279 TCTCTCCCTTTGTGTAAGACAATAG 58.064 40.000 0.00 0.00 44.23 1.73
39 40 6.928348 TCTCTCCCTTTGTGTAAGACAATA 57.072 37.500 0.00 0.00 44.23 1.90
40 41 5.825593 TCTCTCCCTTTGTGTAAGACAAT 57.174 39.130 0.00 0.00 44.23 2.71
41 42 5.825593 ATCTCTCCCTTTGTGTAAGACAA 57.174 39.130 0.00 0.00 43.11 3.18
42 43 8.603898 TTATATCTCTCCCTTTGTGTAAGACA 57.396 34.615 0.00 0.00 35.80 3.41
43 44 9.535878 CTTTATATCTCTCCCTTTGTGTAAGAC 57.464 37.037 0.00 0.00 35.80 3.01
44 45 9.488762 TCTTTATATCTCTCCCTTTGTGTAAGA 57.511 33.333 0.00 0.00 35.80 2.10
45 46 9.757227 CTCTTTATATCTCTCCCTTTGTGTAAG 57.243 37.037 0.00 0.00 0.00 2.34
46 47 8.705594 CCTCTTTATATCTCTCCCTTTGTGTAA 58.294 37.037 0.00 0.00 0.00 2.41
47 48 8.065627 TCCTCTTTATATCTCTCCCTTTGTGTA 58.934 37.037 0.00 0.00 0.00 2.90
48 49 6.903534 TCCTCTTTATATCTCTCCCTTTGTGT 59.096 38.462 0.00 0.00 0.00 3.72
49 50 7.213678 GTCCTCTTTATATCTCTCCCTTTGTG 58.786 42.308 0.00 0.00 0.00 3.33
50 51 6.327887 GGTCCTCTTTATATCTCTCCCTTTGT 59.672 42.308 0.00 0.00 0.00 2.83
51 52 6.327626 TGGTCCTCTTTATATCTCTCCCTTTG 59.672 42.308 0.00 0.00 0.00 2.77
52 53 6.453476 TGGTCCTCTTTATATCTCTCCCTTT 58.547 40.000 0.00 0.00 0.00 3.11
53 54 6.044411 TGGTCCTCTTTATATCTCTCCCTT 57.956 41.667 0.00 0.00 0.00 3.95
54 55 5.377164 TCTGGTCCTCTTTATATCTCTCCCT 59.623 44.000 0.00 0.00 0.00 4.20
55 56 5.479027 GTCTGGTCCTCTTTATATCTCTCCC 59.521 48.000 0.00 0.00 0.00 4.30
56 57 5.479027 GGTCTGGTCCTCTTTATATCTCTCC 59.521 48.000 0.00 0.00 0.00 3.71
57 58 6.311735 AGGTCTGGTCCTCTTTATATCTCTC 58.688 44.000 0.00 0.00 31.32 3.20
58 59 6.288096 AGGTCTGGTCCTCTTTATATCTCT 57.712 41.667 0.00 0.00 31.32 3.10
84 91 6.889177 AGAGATTCTTGAAGGAGGAAAAATCC 59.111 38.462 0.00 0.00 37.07 3.01
93 100 6.125029 AGAGAGAGAGAGATTCTTGAAGGAG 58.875 44.000 0.00 0.00 35.87 3.69
145 154 1.597854 CCGTTTGTCAGAGGCTGCA 60.598 57.895 0.50 0.00 0.00 4.41
197 206 3.319122 GCGGATCAAAGGAAAATATGGCT 59.681 43.478 0.00 0.00 0.00 4.75
235 244 0.598562 GAAGTGACAGGTCTCTGCGA 59.401 55.000 4.92 0.00 44.59 5.10
236 245 0.600557 AGAAGTGACAGGTCTCTGCG 59.399 55.000 4.92 0.00 44.59 5.18
237 246 2.682836 GAAGAAGTGACAGGTCTCTGC 58.317 52.381 4.92 3.42 44.59 4.26
239 248 2.817258 CTCGAAGAAGTGACAGGTCTCT 59.183 50.000 0.65 0.00 34.09 3.10
241 250 1.271102 GCTCGAAGAAGTGACAGGTCT 59.729 52.381 0.65 0.00 34.09 3.85
245 254 4.489810 ACTAATGCTCGAAGAAGTGACAG 58.510 43.478 0.00 0.00 34.09 3.51
246 255 4.521130 ACTAATGCTCGAAGAAGTGACA 57.479 40.909 0.00 0.00 34.09 3.58
247 256 5.847670 AAACTAATGCTCGAAGAAGTGAC 57.152 39.130 0.00 0.00 34.09 3.67
248 257 6.861065 AAAAACTAATGCTCGAAGAAGTGA 57.139 33.333 0.00 0.00 34.09 3.41
433 442 7.706281 ACAGTATCGAATCTATTGAAGCAAG 57.294 36.000 0.00 0.00 0.00 4.01
476 485 3.577805 AACTAAGCAACACCAACTCCT 57.422 42.857 0.00 0.00 0.00 3.69
501 510 5.888691 CTCTAGTAGCAGTTGTTCAGAGA 57.111 43.478 0.00 0.00 31.92 3.10
553 562 4.186926 TCGAAATCCAGCTGAATCTGAAG 58.813 43.478 17.39 0.00 36.19 3.02
594 604 6.092955 TCTACAAACCTGTACTACCTGTTG 57.907 41.667 0.00 0.00 36.96 3.33
664 677 5.378332 TCAATCGGAGGGTAAAGTTGAAAA 58.622 37.500 0.00 0.00 0.00 2.29
677 690 5.627499 TTTTGAACTTCATCAATCGGAGG 57.373 39.130 0.00 0.00 38.98 4.30
695 708 8.392612 ACTTTGCATGTTTCTTTCAAGATTTTG 58.607 29.630 0.00 0.00 34.49 2.44
712 725 6.553524 ACAAAAATGTTTTCCACTTTGCATG 58.446 32.000 0.00 0.00 34.66 4.06
735 748 7.631915 AACGCCATTTTAACTCACATTTTAC 57.368 32.000 0.00 0.00 0.00 2.01
737 750 6.758886 TGAAACGCCATTTTAACTCACATTTT 59.241 30.769 0.00 0.00 0.00 1.82
767 780 5.173312 AGCTTTATTCATGTACGATTCGTCG 59.827 40.000 16.10 3.43 41.54 5.12
831 844 4.202151 GGCCCATTTTCTTCCATATGTCAC 60.202 45.833 1.24 0.00 0.00 3.67
979 993 1.606224 GCTTTCACCACCTGCAAATGG 60.606 52.381 13.23 13.23 42.13 3.16
1131 1145 0.323360 GCCACCAATCAAGGGTAGCA 60.323 55.000 0.00 0.00 41.80 3.49
1263 1277 8.232913 AGAAAGACCAAACTTAGTAATTTGCA 57.767 30.769 10.10 0.00 34.99 4.08
1379 1393 5.430089 AGAAAATAGGGGAGCTGTAACTGAT 59.570 40.000 0.00 0.00 0.00 2.90
1389 1403 7.556635 ACAAATTACAGTAGAAAATAGGGGAGC 59.443 37.037 0.00 0.00 0.00 4.70
1532 2073 6.344500 AGATGCTAGGTTGTAAATGACTCAG 58.656 40.000 0.00 0.00 0.00 3.35
1593 2134 7.588497 AAGGAAAAACTTGCTTAGTGAAGAT 57.412 32.000 0.00 0.00 37.12 2.40
1602 2143 6.092122 GCTACACAAAAAGGAAAAACTTGCTT 59.908 34.615 0.00 0.00 33.93 3.91
1628 2171 6.252655 CGGTAAACAAAAAGGTGAAGAAACTG 59.747 38.462 0.00 0.00 0.00 3.16
1640 2183 8.466026 CGTTATGAAAAGACGGTAAACAAAAAG 58.534 33.333 0.00 0.00 33.45 2.27
2139 2683 6.770785 ACCAAAAGTAATAACTGCACTGAAGA 59.229 34.615 0.00 0.00 35.62 2.87
2233 2777 0.541863 ACCCCATAAACTCCTGAGCG 59.458 55.000 0.00 0.00 0.00 5.03
2767 3311 5.626142 TGTGTCTGAAACCCTGCTTAAATA 58.374 37.500 0.00 0.00 0.00 1.40
2958 3502 3.694072 AGGATGAGAAGACACGAGAAGAG 59.306 47.826 0.00 0.00 0.00 2.85
3141 3685 6.992715 AGTATGTTTCTGGCAGGAATATACAC 59.007 38.462 36.48 24.39 33.30 2.90
3631 4186 4.824166 GCATGGTGCGCGCAAGAG 62.824 66.667 38.24 25.42 41.51 2.85
3728 4283 2.016704 CGGTGCGACATAGATCGGC 61.017 63.158 0.00 0.00 42.49 5.54
3743 4298 1.228552 AAAGGCAATGGACAGCGGT 60.229 52.632 0.00 0.00 0.00 5.68
3761 4316 3.557054 CCTCAAAATCTGGGAAGACGACA 60.557 47.826 0.00 0.00 0.00 4.35
3873 4428 9.689976 CATCAACACAAACCATTTTCAGTATTA 57.310 29.630 0.00 0.00 0.00 0.98
4008 4563 9.796120 CGCTCTTATATTTCTTTATAGAGGGAG 57.204 37.037 0.00 0.00 36.40 4.30
4009 4564 9.310449 ACGCTCTTATATTTCTTTATAGAGGGA 57.690 33.333 16.73 0.00 37.30 4.20
4010 4565 9.930693 AACGCTCTTATATTTCTTTATAGAGGG 57.069 33.333 0.00 0.00 38.95 4.30
4047 4602 9.566432 CCCTCTGTAAAGAAATATAAGAGCATT 57.434 33.333 0.00 0.00 0.00 3.56
4048 4603 8.938883 TCCCTCTGTAAAGAAATATAAGAGCAT 58.061 33.333 0.00 0.00 0.00 3.79
4049 4604 8.319057 TCCCTCTGTAAAGAAATATAAGAGCA 57.681 34.615 0.00 0.00 0.00 4.26
4050 4605 9.785982 ATTCCCTCTGTAAAGAAATATAAGAGC 57.214 33.333 0.00 0.00 0.00 4.09
4061 4616 9.488762 TCTTATGAAGTATTCCCTCTGTAAAGA 57.511 33.333 0.00 0.00 46.93 2.52
4066 4621 9.401058 CAATTTCTTATGAAGTATTCCCTCTGT 57.599 33.333 0.00 0.00 46.93 3.41
4067 4622 9.618890 TCAATTTCTTATGAAGTATTCCCTCTG 57.381 33.333 0.00 0.00 46.93 3.35
4116 4699 6.183360 GGGTTGATCAGCAGCAGTTTATAATT 60.183 38.462 11.93 0.00 0.00 1.40
4154 4737 2.175878 AGAAGCAGCGACTTCAATGT 57.824 45.000 19.65 1.31 46.97 2.71
4165 4748 6.147985 AGCTTAGTGTTTAAAGTAGAAGCAGC 59.852 38.462 19.21 8.20 40.35 5.25
4166 4749 7.360438 CCAGCTTAGTGTTTAAAGTAGAAGCAG 60.360 40.741 19.21 14.09 40.35 4.24
4173 4756 5.237236 AGGCCAGCTTAGTGTTTAAAGTA 57.763 39.130 5.01 0.00 0.00 2.24
4177 4760 4.211920 ACAAAGGCCAGCTTAGTGTTTAA 58.788 39.130 5.01 0.00 0.00 1.52
4188 4771 0.319297 CAGCTCAAACAAAGGCCAGC 60.319 55.000 5.01 1.61 0.00 4.85
4189 4772 0.319297 GCAGCTCAAACAAAGGCCAG 60.319 55.000 5.01 0.00 0.00 4.85
4190 4773 1.042003 TGCAGCTCAAACAAAGGCCA 61.042 50.000 5.01 0.00 0.00 5.36
4191 4774 0.319297 CTGCAGCTCAAACAAAGGCC 60.319 55.000 0.00 0.00 0.00 5.19
4192 4775 0.942884 GCTGCAGCTCAAACAAAGGC 60.943 55.000 31.33 0.00 38.21 4.35
4193 4776 3.190337 GCTGCAGCTCAAACAAAGG 57.810 52.632 31.33 0.00 38.21 3.11
4198 4781 7.142574 GAGAATCAGTAGCTGCAGCTCAAAC 62.143 48.000 42.83 33.41 43.16 2.93
4199 4782 5.154958 GAGAATCAGTAGCTGCAGCTCAAA 61.155 45.833 42.83 24.83 43.16 2.69
4200 4783 3.678252 GAGAATCAGTAGCTGCAGCTCAA 60.678 47.826 42.83 25.63 43.16 3.02
4201 4784 2.159128 GAGAATCAGTAGCTGCAGCTCA 60.159 50.000 42.83 25.83 43.16 4.26
4202 4785 2.472816 GAGAATCAGTAGCTGCAGCTC 58.527 52.381 42.83 31.19 43.16 4.09
4203 4786 1.202394 CGAGAATCAGTAGCTGCAGCT 60.202 52.381 40.60 40.60 45.28 4.24
4204 4787 1.207390 CGAGAATCAGTAGCTGCAGC 58.793 55.000 31.53 31.53 36.67 5.25
4205 4788 1.406898 TCCGAGAATCAGTAGCTGCAG 59.593 52.381 10.11 10.11 33.17 4.41
4206 4789 1.135139 GTCCGAGAATCAGTAGCTGCA 59.865 52.381 4.12 0.00 33.17 4.41
4207 4790 1.407258 AGTCCGAGAATCAGTAGCTGC 59.593 52.381 0.00 0.00 33.17 5.25
4208 4791 2.948979 AGAGTCCGAGAATCAGTAGCTG 59.051 50.000 0.00 0.00 33.17 4.24
4209 4792 3.290948 AGAGTCCGAGAATCAGTAGCT 57.709 47.619 0.00 0.00 33.17 3.32
4210 4793 3.500680 CCTAGAGTCCGAGAATCAGTAGC 59.499 52.174 0.00 0.00 33.17 3.58
4211 4794 3.500680 GCCTAGAGTCCGAGAATCAGTAG 59.499 52.174 0.00 0.00 33.17 2.57
4212 4795 3.478509 GCCTAGAGTCCGAGAATCAGTA 58.521 50.000 0.00 0.00 33.17 2.74
4213 4796 2.303175 GCCTAGAGTCCGAGAATCAGT 58.697 52.381 0.00 0.00 33.17 3.41
4214 4797 1.611491 GGCCTAGAGTCCGAGAATCAG 59.389 57.143 0.00 1.24 33.17 2.90
4215 4798 1.215673 AGGCCTAGAGTCCGAGAATCA 59.784 52.381 1.29 0.00 33.17 2.57
4216 4799 1.989706 AGGCCTAGAGTCCGAGAATC 58.010 55.000 1.29 0.00 0.00 2.52
4217 4800 2.312390 GAAGGCCTAGAGTCCGAGAAT 58.688 52.381 5.16 0.00 0.00 2.40
4218 4801 1.685491 GGAAGGCCTAGAGTCCGAGAA 60.685 57.143 5.16 0.00 0.00 2.87
4219 4802 0.106619 GGAAGGCCTAGAGTCCGAGA 60.107 60.000 5.16 0.00 0.00 4.04
4220 4803 0.395862 TGGAAGGCCTAGAGTCCGAG 60.396 60.000 5.16 0.00 32.45 4.63
4221 4804 0.040646 TTGGAAGGCCTAGAGTCCGA 59.959 55.000 5.16 6.33 32.45 4.55
4222 4805 0.902531 TTTGGAAGGCCTAGAGTCCG 59.097 55.000 5.16 0.00 32.45 4.79
4223 4806 3.546724 GATTTTGGAAGGCCTAGAGTCC 58.453 50.000 5.16 10.48 34.31 3.85
4224 4807 3.546724 GGATTTTGGAAGGCCTAGAGTC 58.453 50.000 5.16 0.00 34.31 3.36
4225 4808 2.092914 CGGATTTTGGAAGGCCTAGAGT 60.093 50.000 5.16 0.00 34.31 3.24
4226 4809 2.170607 TCGGATTTTGGAAGGCCTAGAG 59.829 50.000 5.16 0.00 34.31 2.43
4227 4810 2.193127 TCGGATTTTGGAAGGCCTAGA 58.807 47.619 5.16 0.00 34.31 2.43
4228 4811 2.710096 TCGGATTTTGGAAGGCCTAG 57.290 50.000 5.16 0.00 34.31 3.02
4229 4812 3.202151 AGATTCGGATTTTGGAAGGCCTA 59.798 43.478 5.16 0.00 34.31 3.93
4230 4813 2.024941 AGATTCGGATTTTGGAAGGCCT 60.025 45.455 0.00 0.00 34.31 5.19
4231 4814 2.359214 GAGATTCGGATTTTGGAAGGCC 59.641 50.000 0.00 0.00 0.00 5.19
4232 4815 3.016736 TGAGATTCGGATTTTGGAAGGC 58.983 45.455 0.00 0.00 0.00 4.35
4233 4816 5.048083 TGTTTGAGATTCGGATTTTGGAAGG 60.048 40.000 0.00 0.00 0.00 3.46
4234 4817 6.012658 TGTTTGAGATTCGGATTTTGGAAG 57.987 37.500 0.00 0.00 0.00 3.46
4235 4818 6.398234 TTGTTTGAGATTCGGATTTTGGAA 57.602 33.333 0.00 0.00 0.00 3.53
4236 4819 6.183360 TGTTTGTTTGAGATTCGGATTTTGGA 60.183 34.615 0.00 0.00 0.00 3.53
4237 4820 5.982516 TGTTTGTTTGAGATTCGGATTTTGG 59.017 36.000 0.00 0.00 0.00 3.28
4238 4821 6.475076 TGTGTTTGTTTGAGATTCGGATTTTG 59.525 34.615 0.00 0.00 0.00 2.44
4239 4822 6.568869 TGTGTTTGTTTGAGATTCGGATTTT 58.431 32.000 0.00 0.00 0.00 1.82
4240 4823 6.142818 TGTGTTTGTTTGAGATTCGGATTT 57.857 33.333 0.00 0.00 0.00 2.17
4241 4824 5.766150 TGTGTTTGTTTGAGATTCGGATT 57.234 34.783 0.00 0.00 0.00 3.01
4242 4825 5.473162 TGATGTGTTTGTTTGAGATTCGGAT 59.527 36.000 0.00 0.00 0.00 4.18
4243 4826 4.819088 TGATGTGTTTGTTTGAGATTCGGA 59.181 37.500 0.00 0.00 0.00 4.55
4244 4827 5.049474 TCTGATGTGTTTGTTTGAGATTCGG 60.049 40.000 0.00 0.00 0.00 4.30
4245 4828 5.989249 TCTGATGTGTTTGTTTGAGATTCG 58.011 37.500 0.00 0.00 0.00 3.34
4246 4829 7.540055 GGAATCTGATGTGTTTGTTTGAGATTC 59.460 37.037 0.00 0.00 41.70 2.52
4247 4830 7.014518 TGGAATCTGATGTGTTTGTTTGAGATT 59.985 33.333 0.00 0.00 32.84 2.40
4248 4831 6.491062 TGGAATCTGATGTGTTTGTTTGAGAT 59.509 34.615 0.00 0.00 0.00 2.75
4249 4832 5.827267 TGGAATCTGATGTGTTTGTTTGAGA 59.173 36.000 0.00 0.00 0.00 3.27
4250 4833 6.075762 TGGAATCTGATGTGTTTGTTTGAG 57.924 37.500 0.00 0.00 0.00 3.02
4251 4834 6.462552 TTGGAATCTGATGTGTTTGTTTGA 57.537 33.333 0.00 0.00 0.00 2.69
4252 4835 5.176223 GCTTGGAATCTGATGTGTTTGTTTG 59.824 40.000 0.00 0.00 0.00 2.93
4253 4836 5.069516 AGCTTGGAATCTGATGTGTTTGTTT 59.930 36.000 0.00 0.00 0.00 2.83
4254 4837 4.586001 AGCTTGGAATCTGATGTGTTTGTT 59.414 37.500 0.00 0.00 0.00 2.83
4255 4838 4.147321 AGCTTGGAATCTGATGTGTTTGT 58.853 39.130 0.00 0.00 0.00 2.83
4256 4839 4.778534 AGCTTGGAATCTGATGTGTTTG 57.221 40.909 0.00 0.00 0.00 2.93
4257 4840 4.397417 GCTAGCTTGGAATCTGATGTGTTT 59.603 41.667 7.70 0.00 0.00 2.83
4258 4841 3.944015 GCTAGCTTGGAATCTGATGTGTT 59.056 43.478 7.70 0.00 0.00 3.32
4259 4842 3.199508 AGCTAGCTTGGAATCTGATGTGT 59.800 43.478 12.68 0.00 0.00 3.72
4260 4843 3.806380 AGCTAGCTTGGAATCTGATGTG 58.194 45.455 12.68 0.00 0.00 3.21
4261 4844 4.197750 CAAGCTAGCTTGGAATCTGATGT 58.802 43.478 38.75 10.00 46.88 3.06
4262 4845 4.815040 CAAGCTAGCTTGGAATCTGATG 57.185 45.455 38.75 18.19 46.88 3.07
4271 4854 7.983393 GAATCGATTCTAGCAAGCTAGCTTGG 61.983 46.154 43.02 31.70 45.71 3.61
4272 4855 5.107530 GAATCGATTCTAGCAAGCTAGCTTG 60.108 44.000 40.79 40.79 45.71 4.01
4273 4856 4.599047 ATCGATTCTAGCAAGCTAGCTT 57.401 40.909 24.42 24.42 43.70 3.74
4274 4857 4.280677 AGAATCGATTCTAGCAAGCTAGCT 59.719 41.667 33.79 12.68 44.80 3.32
4275 4858 4.555262 AGAATCGATTCTAGCAAGCTAGC 58.445 43.478 33.79 6.62 44.80 3.42
4276 4859 6.673106 TGTAGAATCGATTCTAGCAAGCTAG 58.327 40.000 36.60 20.32 46.65 3.42
4277 4860 6.635030 TGTAGAATCGATTCTAGCAAGCTA 57.365 37.500 36.60 19.81 46.65 3.32
4278 4861 5.521906 TGTAGAATCGATTCTAGCAAGCT 57.478 39.130 36.60 19.05 46.65 3.74
4279 4862 6.256757 AGTTTGTAGAATCGATTCTAGCAAGC 59.743 38.462 33.74 33.74 46.65 4.01
4280 4863 7.763172 AGTTTGTAGAATCGATTCTAGCAAG 57.237 36.000 36.60 0.00 46.65 4.01
4281 4864 9.647797 TTAAGTTTGTAGAATCGATTCTAGCAA 57.352 29.630 36.60 33.88 46.65 3.91
4282 4865 9.084164 GTTAAGTTTGTAGAATCGATTCTAGCA 57.916 33.333 36.60 31.59 46.65 3.49
4283 4866 9.303537 AGTTAAGTTTGTAGAATCGATTCTAGC 57.696 33.333 36.60 30.05 46.65 3.42
4287 4870 9.362539 TGGTAGTTAAGTTTGTAGAATCGATTC 57.637 33.333 27.16 27.16 37.06 2.52
4288 4871 9.367444 CTGGTAGTTAAGTTTGTAGAATCGATT 57.633 33.333 11.20 11.20 0.00 3.34
4289 4872 7.980099 CCTGGTAGTTAAGTTTGTAGAATCGAT 59.020 37.037 0.00 0.00 0.00 3.59
4290 4873 7.318141 CCTGGTAGTTAAGTTTGTAGAATCGA 58.682 38.462 0.00 0.00 0.00 3.59
4291 4874 6.035758 GCCTGGTAGTTAAGTTTGTAGAATCG 59.964 42.308 0.00 0.00 0.00 3.34
4292 4875 6.877322 TGCCTGGTAGTTAAGTTTGTAGAATC 59.123 38.462 0.00 0.00 0.00 2.52
4293 4876 6.775708 TGCCTGGTAGTTAAGTTTGTAGAAT 58.224 36.000 0.00 0.00 0.00 2.40
4294 4877 6.177310 TGCCTGGTAGTTAAGTTTGTAGAA 57.823 37.500 0.00 0.00 0.00 2.10
4295 4878 5.811796 TGCCTGGTAGTTAAGTTTGTAGA 57.188 39.130 0.00 0.00 0.00 2.59
4296 4879 6.228258 TCTTGCCTGGTAGTTAAGTTTGTAG 58.772 40.000 0.00 0.00 0.00 2.74
4297 4880 6.042322 TCTCTTGCCTGGTAGTTAAGTTTGTA 59.958 38.462 0.00 0.00 0.00 2.41
4298 4881 5.043737 TCTTGCCTGGTAGTTAAGTTTGT 57.956 39.130 0.00 0.00 0.00 2.83
4299 4882 5.305585 TCTCTTGCCTGGTAGTTAAGTTTG 58.694 41.667 0.00 0.00 0.00 2.93
4300 4883 5.562298 TCTCTTGCCTGGTAGTTAAGTTT 57.438 39.130 0.00 0.00 0.00 2.66
4301 4884 5.562298 TTCTCTTGCCTGGTAGTTAAGTT 57.438 39.130 0.00 0.00 0.00 2.66
4302 4885 5.338463 GGATTCTCTTGCCTGGTAGTTAAGT 60.338 44.000 0.00 0.00 0.00 2.24
4303 4886 5.119694 GGATTCTCTTGCCTGGTAGTTAAG 58.880 45.833 0.00 0.00 0.00 1.85
4304 4887 4.382685 CGGATTCTCTTGCCTGGTAGTTAA 60.383 45.833 0.00 0.00 0.00 2.01
4305 4888 3.132289 CGGATTCTCTTGCCTGGTAGTTA 59.868 47.826 0.00 0.00 0.00 2.24
4306 4889 2.093447 CGGATTCTCTTGCCTGGTAGTT 60.093 50.000 0.00 0.00 0.00 2.24
4307 4890 1.482593 CGGATTCTCTTGCCTGGTAGT 59.517 52.381 0.00 0.00 0.00 2.73
4308 4891 1.202580 CCGGATTCTCTTGCCTGGTAG 60.203 57.143 0.00 0.00 0.00 3.18
4309 4892 0.830648 CCGGATTCTCTTGCCTGGTA 59.169 55.000 0.00 0.00 0.00 3.25
4310 4893 0.909610 TCCGGATTCTCTTGCCTGGT 60.910 55.000 0.00 0.00 0.00 4.00
4311 4894 0.253044 TTCCGGATTCTCTTGCCTGG 59.747 55.000 4.15 0.00 0.00 4.45
4312 4895 1.661341 CTTCCGGATTCTCTTGCCTG 58.339 55.000 4.15 0.00 0.00 4.85
4313 4896 0.107459 GCTTCCGGATTCTCTTGCCT 60.107 55.000 4.15 0.00 0.00 4.75
4314 4897 0.107459 AGCTTCCGGATTCTCTTGCC 60.107 55.000 4.15 0.00 0.00 4.52
4315 4898 1.012841 CAGCTTCCGGATTCTCTTGC 58.987 55.000 4.15 1.58 0.00 4.01
4316 4899 1.012841 GCAGCTTCCGGATTCTCTTG 58.987 55.000 4.15 0.00 0.00 3.02
4317 4900 0.460987 CGCAGCTTCCGGATTCTCTT 60.461 55.000 4.15 0.00 0.00 2.85
4318 4901 1.142748 CGCAGCTTCCGGATTCTCT 59.857 57.895 4.15 0.00 0.00 3.10
4319 4902 0.249657 ATCGCAGCTTCCGGATTCTC 60.250 55.000 4.15 0.00 0.00 2.87
4320 4903 0.179000 AATCGCAGCTTCCGGATTCT 59.821 50.000 4.15 1.92 0.00 2.40
4321 4904 1.017387 AAATCGCAGCTTCCGGATTC 58.983 50.000 4.15 0.00 0.00 2.52
4322 4905 1.133025 CAAAATCGCAGCTTCCGGATT 59.867 47.619 4.15 0.00 0.00 3.01
4323 4906 0.734889 CAAAATCGCAGCTTCCGGAT 59.265 50.000 4.15 0.00 0.00 4.18
4324 4907 1.305219 CCAAAATCGCAGCTTCCGGA 61.305 55.000 0.00 0.00 0.00 5.14
4325 4908 1.137404 CCAAAATCGCAGCTTCCGG 59.863 57.895 0.00 0.00 0.00 5.14
4326 4909 0.454957 CACCAAAATCGCAGCTTCCG 60.455 55.000 0.00 0.00 0.00 4.30
4327 4910 0.881118 TCACCAAAATCGCAGCTTCC 59.119 50.000 0.00 0.00 0.00 3.46
4328 4911 2.927553 ATCACCAAAATCGCAGCTTC 57.072 45.000 0.00 0.00 0.00 3.86
4329 4912 2.557924 TGAATCACCAAAATCGCAGCTT 59.442 40.909 0.00 0.00 0.00 3.74
4330 4913 2.161855 TGAATCACCAAAATCGCAGCT 58.838 42.857 0.00 0.00 0.00 4.24
4331 4914 2.523015 CTGAATCACCAAAATCGCAGC 58.477 47.619 0.00 0.00 0.00 5.25
4332 4915 2.523015 GCTGAATCACCAAAATCGCAG 58.477 47.619 0.00 0.00 0.00 5.18
4333 4916 1.202114 GGCTGAATCACCAAAATCGCA 59.798 47.619 0.00 0.00 0.00 5.10
4334 4917 1.202114 TGGCTGAATCACCAAAATCGC 59.798 47.619 2.80 0.00 31.46 4.58
4335 4918 3.574284 TTGGCTGAATCACCAAAATCG 57.426 42.857 12.57 0.00 42.87 3.34
4341 4924 1.820519 GCAGAATTGGCTGAATCACCA 59.179 47.619 0.00 1.38 38.14 4.17
4342 4925 1.820519 TGCAGAATTGGCTGAATCACC 59.179 47.619 0.00 0.00 38.14 4.02
4343 4926 2.734492 GCTGCAGAATTGGCTGAATCAC 60.734 50.000 20.43 0.00 38.14 3.06
4344 4927 1.475280 GCTGCAGAATTGGCTGAATCA 59.525 47.619 20.43 0.00 38.14 2.57
4345 4928 1.749634 AGCTGCAGAATTGGCTGAATC 59.250 47.619 20.43 0.00 38.14 2.52
4346 4929 1.848652 AGCTGCAGAATTGGCTGAAT 58.151 45.000 20.43 0.00 38.14 2.57
4347 4930 1.542915 GAAGCTGCAGAATTGGCTGAA 59.457 47.619 20.43 0.00 38.14 3.02
4348 4931 1.171308 GAAGCTGCAGAATTGGCTGA 58.829 50.000 20.43 0.00 38.14 4.26
4349 4932 0.172803 GGAAGCTGCAGAATTGGCTG 59.827 55.000 20.43 0.00 38.91 4.85
4350 4933 0.969409 GGGAAGCTGCAGAATTGGCT 60.969 55.000 20.43 3.48 36.53 4.75
4351 4934 1.252904 TGGGAAGCTGCAGAATTGGC 61.253 55.000 20.43 0.47 0.00 4.52
4352 4935 0.529378 GTGGGAAGCTGCAGAATTGG 59.471 55.000 20.43 0.00 0.00 3.16
4353 4936 1.250328 TGTGGGAAGCTGCAGAATTG 58.750 50.000 20.43 0.00 0.00 2.32
4354 4937 1.999648 TTGTGGGAAGCTGCAGAATT 58.000 45.000 20.43 11.40 0.00 2.17
4355 4938 1.999648 TTTGTGGGAAGCTGCAGAAT 58.000 45.000 20.43 4.30 0.00 2.40
4356 4939 1.682854 CTTTTGTGGGAAGCTGCAGAA 59.317 47.619 20.43 0.00 0.00 3.02
4357 4940 1.133823 TCTTTTGTGGGAAGCTGCAGA 60.134 47.619 20.43 0.00 0.00 4.26
4358 4941 1.321474 TCTTTTGTGGGAAGCTGCAG 58.679 50.000 10.11 10.11 0.00 4.41
4359 4942 1.774110 TTCTTTTGTGGGAAGCTGCA 58.226 45.000 1.02 0.00 0.00 4.41
4360 4943 2.866156 GTTTTCTTTTGTGGGAAGCTGC 59.134 45.455 0.00 0.00 0.00 5.25
4361 4944 3.115554 CGTTTTCTTTTGTGGGAAGCTG 58.884 45.455 0.00 0.00 0.00 4.24
4362 4945 2.100749 CCGTTTTCTTTTGTGGGAAGCT 59.899 45.455 0.00 0.00 0.00 3.74
4363 4946 2.159156 ACCGTTTTCTTTTGTGGGAAGC 60.159 45.455 0.00 0.00 0.00 3.86
4364 4947 3.793797 ACCGTTTTCTTTTGTGGGAAG 57.206 42.857 0.00 0.00 0.00 3.46
4365 4948 3.510360 TGAACCGTTTTCTTTTGTGGGAA 59.490 39.130 0.00 0.00 0.00 3.97
4366 4949 3.090037 TGAACCGTTTTCTTTTGTGGGA 58.910 40.909 0.00 0.00 0.00 4.37
4367 4950 3.119280 ACTGAACCGTTTTCTTTTGTGGG 60.119 43.478 0.00 0.00 0.00 4.61
4368 4951 4.104696 ACTGAACCGTTTTCTTTTGTGG 57.895 40.909 0.00 0.00 0.00 4.17
4369 4952 5.631512 TCAAACTGAACCGTTTTCTTTTGTG 59.368 36.000 14.43 0.00 35.06 3.33
4370 4953 5.774630 TCAAACTGAACCGTTTTCTTTTGT 58.225 33.333 14.43 0.00 35.06 2.83
4371 4954 5.220209 GCTCAAACTGAACCGTTTTCTTTTG 60.220 40.000 11.45 11.45 35.06 2.44
4372 4955 4.862574 GCTCAAACTGAACCGTTTTCTTTT 59.137 37.500 0.00 0.00 35.06 2.27
4373 4956 4.421058 GCTCAAACTGAACCGTTTTCTTT 58.579 39.130 0.00 0.00 35.06 2.52
4374 4957 3.181490 GGCTCAAACTGAACCGTTTTCTT 60.181 43.478 0.00 0.00 35.06 2.52
4375 4958 2.357952 GGCTCAAACTGAACCGTTTTCT 59.642 45.455 0.00 0.00 35.06 2.52
4376 4959 2.543031 GGGCTCAAACTGAACCGTTTTC 60.543 50.000 0.00 0.00 33.52 2.29
4377 4960 1.407618 GGGCTCAAACTGAACCGTTTT 59.592 47.619 0.00 0.00 33.52 2.43
4378 4961 1.029681 GGGCTCAAACTGAACCGTTT 58.970 50.000 0.00 0.00 33.52 3.60
4379 4962 0.182775 AGGGCTCAAACTGAACCGTT 59.817 50.000 0.00 0.00 33.52 4.44
4380 4963 0.182775 AAGGGCTCAAACTGAACCGT 59.817 50.000 0.00 0.00 33.52 4.83
4381 4964 0.593128 CAAGGGCTCAAACTGAACCG 59.407 55.000 0.00 0.00 33.52 4.44
4382 4965 0.315251 GCAAGGGCTCAAACTGAACC 59.685 55.000 0.00 0.00 36.96 3.62
4383 4966 0.315251 GGCAAGGGCTCAAACTGAAC 59.685 55.000 0.00 0.00 40.87 3.18
4384 4967 0.827507 GGGCAAGGGCTCAAACTGAA 60.828 55.000 0.00 0.00 41.45 3.02
4385 4968 1.228552 GGGCAAGGGCTCAAACTGA 60.229 57.895 0.00 0.00 41.45 3.41
4386 4969 2.278330 GGGGCAAGGGCTCAAACTG 61.278 63.158 0.00 0.00 44.63 3.16
4387 4970 2.118294 GGGGCAAGGGCTCAAACT 59.882 61.111 0.00 0.00 44.63 2.66
4388 4971 2.118294 AGGGGCAAGGGCTCAAAC 59.882 61.111 0.00 0.00 44.63 2.93
4389 4972 2.118076 CAGGGGCAAGGGCTCAAA 59.882 61.111 0.00 0.00 44.63 2.69
4390 4973 2.310930 AAACAGGGGCAAGGGCTCAA 62.311 55.000 0.00 0.00 44.63 3.02
4391 4974 2.713531 GAAACAGGGGCAAGGGCTCA 62.714 60.000 0.00 0.00 44.63 4.26
4392 4975 1.979155 GAAACAGGGGCAAGGGCTC 60.979 63.158 0.00 0.00 40.92 4.70
4393 4976 2.118294 GAAACAGGGGCAAGGGCT 59.882 61.111 0.00 0.00 40.87 5.19
4394 4977 2.997315 GGAAACAGGGGCAAGGGC 60.997 66.667 0.00 0.00 40.13 5.19
4395 4978 2.525592 TGGAAACAGGGGCAAGGG 59.474 61.111 0.00 0.00 35.01 3.95
4405 4988 8.865090 ACCATATTGTAATTTTGACTGGAAACA 58.135 29.630 0.00 0.00 39.59 2.83
4406 4989 9.353999 GACCATATTGTAATTTTGACTGGAAAC 57.646 33.333 0.00 0.00 0.00 2.78
4407 4990 9.083422 TGACCATATTGTAATTTTGACTGGAAA 57.917 29.630 0.00 0.00 0.00 3.13
4408 4991 8.642935 TGACCATATTGTAATTTTGACTGGAA 57.357 30.769 0.00 0.00 0.00 3.53
4409 4992 8.642935 TTGACCATATTGTAATTTTGACTGGA 57.357 30.769 0.00 0.00 0.00 3.86
4410 4993 9.874205 ATTTGACCATATTGTAATTTTGACTGG 57.126 29.630 0.00 0.00 0.00 4.00
4431 5014 6.229733 TGCATATGATGTATCGGTCATTTGA 58.770 36.000 6.97 0.00 36.51 2.69
4440 5023 8.720562 TCAGGTTATTTTGCATATGATGTATCG 58.279 33.333 6.97 0.00 0.00 2.92
4444 5027 8.523915 TTCTCAGGTTATTTTGCATATGATGT 57.476 30.769 6.97 0.00 0.00 3.06
4450 5034 9.859427 CTGAAATTTCTCAGGTTATTTTGCATA 57.141 29.630 18.64 0.00 39.39 3.14
4472 5065 6.433847 TGTCTTGGGTCTTTTCTATCTGAA 57.566 37.500 0.00 0.00 0.00 3.02
4485 5078 4.619160 GCTTTTCATTCCATGTCTTGGGTC 60.619 45.833 4.99 0.00 46.45 4.46
4550 5143 2.030007 CCTGTACATTTTGCACCCAGTG 60.030 50.000 0.00 0.00 36.51 3.66
4572 5165 9.007252 TCAAATTTTGATTTTGCGAAAAACATG 57.993 25.926 2.67 0.00 33.93 3.21
4581 5174 4.152223 GGAGGGTCAAATTTTGATTTTGCG 59.848 41.667 14.54 0.00 42.47 4.85
4604 5197 5.807520 GTGAGTATACAGTTCACCATGTGAG 59.192 44.000 5.50 0.00 43.69 3.51
4645 5238 5.664908 AGAGTTGATGATAGTCCCATCACTT 59.335 40.000 5.42 0.00 46.88 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.