Multiple sequence alignment - TraesCS5B01G080000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G080000 chr5B 100.000 2531 0 0 1 2531 98024032 98026562 0.000000e+00 4674
1 TraesCS5B01G080000 chr5A 91.617 1348 74 20 270 1584 86165758 86167099 0.000000e+00 1827
2 TraesCS5B01G080000 chr5A 89.217 575 45 10 1701 2262 86167231 86167801 0.000000e+00 702
3 TraesCS5B01G080000 chr5A 80.336 417 70 10 1954 2363 585395922 585395511 3.160000e-79 305
4 TraesCS5B01G080000 chr5A 84.906 212 23 6 2155 2363 456595997 456596202 3.300000e-49 206
5 TraesCS5B01G080000 chr5A 95.690 116 2 2 1575 1687 86167129 86167244 1.550000e-42 183
6 TraesCS5B01G080000 chr5A 91.139 79 7 0 163 241 86165680 86165758 9.570000e-20 108
7 TraesCS5B01G080000 chr5D 91.569 854 48 10 484 1328 92449602 92450440 0.000000e+00 1157
8 TraesCS5B01G080000 chr5D 89.292 579 44 11 1701 2262 92456024 92456601 0.000000e+00 710
9 TraesCS5B01G080000 chr5D 96.958 263 8 0 1322 1584 92455641 92455903 2.310000e-120 442
10 TraesCS5B01G080000 chr5D 87.569 362 28 9 2174 2531 92456478 92456826 1.090000e-108 403
11 TraesCS5B01G080000 chr5D 86.686 338 31 7 163 487 92447428 92447764 1.850000e-96 363
12 TraesCS5B01G080000 chr5D 77.838 370 75 6 1954 2319 1889610 1889244 3.280000e-54 222
13 TraesCS5B01G080000 chr5D 92.174 115 2 3 1575 1685 92455924 92456035 3.370000e-34 156
14 TraesCS5B01G080000 chr4B 78.708 418 82 6 1951 2363 421554113 421554528 3.210000e-69 272
15 TraesCS5B01G080000 chr2A 80.702 342 56 7 1958 2295 63384214 63383879 8.980000e-65 257
16 TraesCS5B01G080000 chr2A 81.538 195 28 7 2100 2289 572716181 572715990 1.210000e-33 154
17 TraesCS5B01G080000 chr7B 78.673 422 62 14 1952 2363 708107555 708107958 3.230000e-64 255
18 TraesCS5B01G080000 chr1A 76.982 391 62 13 1976 2363 42216502 42216867 5.520000e-47 198
19 TraesCS5B01G080000 chr4A 87.023 131 15 2 2214 2343 227088072 227087943 2.030000e-31 147


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G080000 chr5B 98024032 98026562 2530 False 4674.00 4674 100.00000 1 2531 1 chr5B.!!$F1 2530
1 TraesCS5B01G080000 chr5A 86165680 86167801 2121 False 705.00 1827 91.91575 163 2262 4 chr5A.!!$F2 2099
2 TraesCS5B01G080000 chr5D 92447428 92450440 3012 False 760.00 1157 89.12750 163 1328 2 chr5D.!!$F1 1165
3 TraesCS5B01G080000 chr5D 92455641 92456826 1185 False 427.75 710 91.49825 1322 2531 4 chr5D.!!$F2 1209

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
252 282 0.10412 TCGAAGGATATGTGTGGCGG 59.896 55.0 0.0 0.0 0.0 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2091 4050 0.804989 GTAGACCATTGCAGCACCAC 59.195 55.0 0.0 0.0 0.0 4.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.059459 CGGAATATCGCCGCACGC 62.059 66.667 4.30 0.00 42.55 5.34
19 20 2.661866 GGAATATCGCCGCACGCT 60.662 61.111 0.00 0.00 43.23 5.07
20 21 1.372499 GGAATATCGCCGCACGCTA 60.372 57.895 0.00 0.00 43.23 4.26
21 22 1.615107 GGAATATCGCCGCACGCTAC 61.615 60.000 0.00 0.00 43.23 3.58
22 23 0.937699 GAATATCGCCGCACGCTACA 60.938 55.000 0.00 0.00 43.23 2.74
23 24 0.319555 AATATCGCCGCACGCTACAT 60.320 50.000 0.00 0.00 43.23 2.29
24 25 0.319555 ATATCGCCGCACGCTACATT 60.320 50.000 0.00 0.00 43.23 2.71
25 26 0.937699 TATCGCCGCACGCTACATTC 60.938 55.000 0.00 0.00 43.23 2.67
26 27 2.899345 ATCGCCGCACGCTACATTCA 62.899 55.000 0.00 0.00 43.23 2.57
27 28 2.735677 CGCCGCACGCTACATTCAA 61.736 57.895 0.00 0.00 34.21 2.69
28 29 1.060937 GCCGCACGCTACATTCAAG 59.939 57.895 0.00 0.00 0.00 3.02
29 30 1.635663 GCCGCACGCTACATTCAAGT 61.636 55.000 0.00 0.00 0.00 3.16
30 31 0.370273 CCGCACGCTACATTCAAGTC 59.630 55.000 0.00 0.00 0.00 3.01
31 32 1.067693 CGCACGCTACATTCAAGTCA 58.932 50.000 0.00 0.00 0.00 3.41
32 33 1.459209 CGCACGCTACATTCAAGTCAA 59.541 47.619 0.00 0.00 0.00 3.18
33 34 2.094258 CGCACGCTACATTCAAGTCAAT 59.906 45.455 0.00 0.00 0.00 2.57
34 35 3.424829 CGCACGCTACATTCAAGTCAATT 60.425 43.478 0.00 0.00 0.00 2.32
35 36 4.475944 GCACGCTACATTCAAGTCAATTT 58.524 39.130 0.00 0.00 0.00 1.82
36 37 4.554973 GCACGCTACATTCAAGTCAATTTC 59.445 41.667 0.00 0.00 0.00 2.17
37 38 5.617751 GCACGCTACATTCAAGTCAATTTCT 60.618 40.000 0.00 0.00 0.00 2.52
38 39 6.373779 CACGCTACATTCAAGTCAATTTCTT 58.626 36.000 0.00 0.00 0.00 2.52
39 40 6.857964 CACGCTACATTCAAGTCAATTTCTTT 59.142 34.615 0.00 0.00 0.00 2.52
40 41 8.015087 CACGCTACATTCAAGTCAATTTCTTTA 58.985 33.333 0.00 0.00 0.00 1.85
41 42 8.564574 ACGCTACATTCAAGTCAATTTCTTTAA 58.435 29.630 0.00 0.00 0.00 1.52
42 43 9.393249 CGCTACATTCAAGTCAATTTCTTTAAA 57.607 29.630 0.00 0.00 0.00 1.52
81 82 9.691362 AAAGAAATTACATGATTAACACACACC 57.309 29.630 0.00 0.00 0.00 4.16
82 83 8.402798 AGAAATTACATGATTAACACACACCA 57.597 30.769 0.00 0.00 0.00 4.17
83 84 9.023962 AGAAATTACATGATTAACACACACCAT 57.976 29.630 0.00 0.00 0.00 3.55
84 85 9.289303 GAAATTACATGATTAACACACACCATC 57.711 33.333 0.00 0.00 0.00 3.51
85 86 6.751514 TTACATGATTAACACACACCATCC 57.248 37.500 0.00 0.00 0.00 3.51
86 87 4.661222 ACATGATTAACACACACCATCCA 58.339 39.130 0.00 0.00 0.00 3.41
87 88 5.076182 ACATGATTAACACACACCATCCAA 58.924 37.500 0.00 0.00 0.00 3.53
88 89 5.538053 ACATGATTAACACACACCATCCAAA 59.462 36.000 0.00 0.00 0.00 3.28
89 90 5.703978 TGATTAACACACACCATCCAAAG 57.296 39.130 0.00 0.00 0.00 2.77
90 91 4.022416 TGATTAACACACACCATCCAAAGC 60.022 41.667 0.00 0.00 0.00 3.51
91 92 1.039856 AACACACACCATCCAAAGCC 58.960 50.000 0.00 0.00 0.00 4.35
92 93 0.827507 ACACACACCATCCAAAGCCC 60.828 55.000 0.00 0.00 0.00 5.19
93 94 1.228862 ACACACCATCCAAAGCCCC 60.229 57.895 0.00 0.00 0.00 5.80
94 95 1.984026 CACACCATCCAAAGCCCCC 60.984 63.158 0.00 0.00 0.00 5.40
95 96 2.169810 ACACCATCCAAAGCCCCCT 61.170 57.895 0.00 0.00 0.00 4.79
96 97 1.380380 CACCATCCAAAGCCCCCTC 60.380 63.158 0.00 0.00 0.00 4.30
97 98 2.280079 CCATCCAAAGCCCCCTCC 59.720 66.667 0.00 0.00 0.00 4.30
98 99 2.319762 CCATCCAAAGCCCCCTCCT 61.320 63.158 0.00 0.00 0.00 3.69
99 100 0.993509 CCATCCAAAGCCCCCTCCTA 60.994 60.000 0.00 0.00 0.00 2.94
100 101 0.926293 CATCCAAAGCCCCCTCCTAA 59.074 55.000 0.00 0.00 0.00 2.69
101 102 1.287739 CATCCAAAGCCCCCTCCTAAA 59.712 52.381 0.00 0.00 0.00 1.85
102 103 1.462426 TCCAAAGCCCCCTCCTAAAA 58.538 50.000 0.00 0.00 0.00 1.52
103 104 2.007636 TCCAAAGCCCCCTCCTAAAAT 58.992 47.619 0.00 0.00 0.00 1.82
104 105 2.110578 CCAAAGCCCCCTCCTAAAATG 58.889 52.381 0.00 0.00 0.00 2.32
105 106 2.559705 CCAAAGCCCCCTCCTAAAATGT 60.560 50.000 0.00 0.00 0.00 2.71
106 107 2.497273 CAAAGCCCCCTCCTAAAATGTG 59.503 50.000 0.00 0.00 0.00 3.21
107 108 0.631212 AGCCCCCTCCTAAAATGTGG 59.369 55.000 0.00 0.00 0.00 4.17
108 109 1.043116 GCCCCCTCCTAAAATGTGGC 61.043 60.000 0.00 0.00 0.00 5.01
109 110 0.397114 CCCCCTCCTAAAATGTGGCC 60.397 60.000 0.00 0.00 0.00 5.36
110 111 0.334676 CCCCTCCTAAAATGTGGCCA 59.665 55.000 0.00 0.00 0.00 5.36
111 112 1.474330 CCCTCCTAAAATGTGGCCAC 58.526 55.000 29.67 29.67 0.00 5.01
112 113 1.005924 CCCTCCTAAAATGTGGCCACT 59.994 52.381 34.75 18.47 0.00 4.00
113 114 2.557452 CCCTCCTAAAATGTGGCCACTT 60.557 50.000 34.75 26.75 0.00 3.16
114 115 3.165071 CCTCCTAAAATGTGGCCACTTT 58.835 45.455 34.75 30.57 0.00 2.66
115 116 3.193479 CCTCCTAAAATGTGGCCACTTTC 59.807 47.826 34.75 11.00 0.00 2.62
116 117 4.082125 CTCCTAAAATGTGGCCACTTTCT 58.918 43.478 34.75 24.08 0.00 2.52
117 118 5.249780 TCCTAAAATGTGGCCACTTTCTA 57.750 39.130 34.75 23.91 0.00 2.10
118 119 5.253330 TCCTAAAATGTGGCCACTTTCTAG 58.747 41.667 34.75 30.10 0.00 2.43
119 120 4.399303 CCTAAAATGTGGCCACTTTCTAGG 59.601 45.833 33.16 33.16 0.00 3.02
120 121 3.525800 AAATGTGGCCACTTTCTAGGT 57.474 42.857 34.75 17.10 0.00 3.08
121 122 3.525800 AATGTGGCCACTTTCTAGGTT 57.474 42.857 34.75 10.53 0.00 3.50
122 123 4.650972 AATGTGGCCACTTTCTAGGTTA 57.349 40.909 34.75 12.51 0.00 2.85
123 124 4.650972 ATGTGGCCACTTTCTAGGTTAA 57.349 40.909 34.75 11.96 0.00 2.01
124 125 4.015872 TGTGGCCACTTTCTAGGTTAAG 57.984 45.455 34.75 0.00 0.00 1.85
125 126 3.393278 TGTGGCCACTTTCTAGGTTAAGT 59.607 43.478 34.75 0.00 35.06 2.24
126 127 4.594062 TGTGGCCACTTTCTAGGTTAAGTA 59.406 41.667 34.75 7.38 33.49 2.24
127 128 5.072058 TGTGGCCACTTTCTAGGTTAAGTAA 59.928 40.000 34.75 6.97 33.49 2.24
128 129 5.999600 GTGGCCACTTTCTAGGTTAAGTAAA 59.000 40.000 29.12 0.00 33.49 2.01
129 130 5.999600 TGGCCACTTTCTAGGTTAAGTAAAC 59.000 40.000 0.00 0.00 33.49 2.01
130 131 5.999600 GGCCACTTTCTAGGTTAAGTAAACA 59.000 40.000 0.00 0.00 40.08 2.83
131 132 6.657966 GGCCACTTTCTAGGTTAAGTAAACAT 59.342 38.462 0.00 0.00 40.08 2.71
132 133 7.361799 GGCCACTTTCTAGGTTAAGTAAACATG 60.362 40.741 0.00 0.00 40.08 3.21
133 134 7.389607 GCCACTTTCTAGGTTAAGTAAACATGA 59.610 37.037 0.00 0.00 40.08 3.07
134 135 9.449719 CCACTTTCTAGGTTAAGTAAACATGAT 57.550 33.333 0.00 0.00 40.08 2.45
168 169 5.733226 TTTCGCACTTATGATATGTGTGG 57.267 39.130 23.28 14.49 41.73 4.17
174 175 0.320334 TATGATATGTGTGGCGGGCG 60.320 55.000 0.00 0.00 0.00 6.13
249 279 3.861840 AGTTGTCGAAGGATATGTGTGG 58.138 45.455 0.00 0.00 0.00 4.17
250 280 2.309528 TGTCGAAGGATATGTGTGGC 57.690 50.000 0.00 0.00 0.00 5.01
251 281 1.209128 GTCGAAGGATATGTGTGGCG 58.791 55.000 0.00 0.00 0.00 5.69
252 282 0.104120 TCGAAGGATATGTGTGGCGG 59.896 55.000 0.00 0.00 0.00 6.13
253 283 0.880278 CGAAGGATATGTGTGGCGGG 60.880 60.000 0.00 0.00 0.00 6.13
254 284 1.152963 AAGGATATGTGTGGCGGGC 60.153 57.895 0.00 0.00 0.00 6.13
255 285 2.940890 AAGGATATGTGTGGCGGGCG 62.941 60.000 0.00 0.00 0.00 6.13
256 286 2.203015 GATATGTGTGGCGGGCGT 60.203 61.111 0.00 0.00 0.00 5.68
257 287 1.817941 GATATGTGTGGCGGGCGTT 60.818 57.895 0.00 0.00 0.00 4.84
258 288 1.772063 GATATGTGTGGCGGGCGTTC 61.772 60.000 0.00 0.00 0.00 3.95
259 289 3.961838 TATGTGTGGCGGGCGTTCC 62.962 63.158 0.00 0.00 0.00 3.62
268 298 2.104530 GGGCGTTCCGTAGAGCTC 59.895 66.667 5.27 5.27 0.00 4.09
269 299 2.707849 GGGCGTTCCGTAGAGCTCA 61.708 63.158 17.77 0.00 0.00 4.26
272 302 1.226323 CGTTCCGTAGAGCTCACCG 60.226 63.158 17.77 16.54 0.00 4.94
330 361 2.423577 GACCGCCACTACTGTTTTCAT 58.576 47.619 0.00 0.00 0.00 2.57
334 365 3.369052 CCGCCACTACTGTTTTCATCCTA 60.369 47.826 0.00 0.00 0.00 2.94
336 367 5.452776 CCGCCACTACTGTTTTCATCCTATA 60.453 44.000 0.00 0.00 0.00 1.31
370 403 0.675522 ATTTACTTGTGGCGGGTCCG 60.676 55.000 4.85 4.85 43.09 4.79
380 413 0.818040 GGCGGGTCCGAAATATTGCT 60.818 55.000 14.15 0.00 42.83 3.91
394 427 4.873746 ATATTGCTCGCCACTACTATGT 57.126 40.909 0.00 0.00 0.00 2.29
395 428 2.293677 TTGCTCGCCACTACTATGTG 57.706 50.000 0.00 0.00 37.66 3.21
396 429 0.179111 TGCTCGCCACTACTATGTGC 60.179 55.000 0.00 0.00 36.68 4.57
438 481 7.390718 ACCTGCTAGTACTACTTTTCCAAAATG 59.609 37.037 0.00 0.00 0.00 2.32
486 2370 2.227388 GCCACTCATTTGAGGTCACTTG 59.773 50.000 11.99 0.51 46.13 3.16
491 2375 5.760253 CACTCATTTGAGGTCACTTGTACTT 59.240 40.000 11.99 0.00 46.13 2.24
501 2385 4.885325 GGTCACTTGTACTTCTTTTCCCAA 59.115 41.667 0.00 0.00 0.00 4.12
523 2407 3.251479 AGTGCATGTCTCGCTGATTAA 57.749 42.857 0.00 0.00 0.00 1.40
529 2417 5.178067 TGCATGTCTCGCTGATTAATACATG 59.822 40.000 16.00 16.00 43.39 3.21
570 2458 4.785511 ATAGGTCGATTCCAATACTCGG 57.214 45.455 0.00 0.00 33.38 4.63
782 2676 3.451178 ACGATTACTCCACCAGCTACAAT 59.549 43.478 0.00 0.00 0.00 2.71
821 2715 1.160137 GGTGTTCACTGATGCCACTC 58.840 55.000 2.98 0.00 31.63 3.51
822 2716 1.160137 GTGTTCACTGATGCCACTCC 58.840 55.000 0.00 0.00 0.00 3.85
823 2717 0.764271 TGTTCACTGATGCCACTCCA 59.236 50.000 0.00 0.00 0.00 3.86
824 2718 1.352017 TGTTCACTGATGCCACTCCAT 59.648 47.619 0.00 0.00 0.00 3.41
845 2739 0.318869 CAACTACCGTACCACGTGCA 60.319 55.000 10.91 0.00 40.58 4.57
874 2768 1.433534 GCTATTATCGTCAGCTGGCC 58.566 55.000 13.81 0.00 32.46 5.36
908 2802 2.820330 CAACAACCGCCAAAACAAGAT 58.180 42.857 0.00 0.00 0.00 2.40
928 2824 4.887071 AGATTTGCCTCTTTTGTGTGTGTA 59.113 37.500 0.00 0.00 0.00 2.90
930 2826 6.714810 AGATTTGCCTCTTTTGTGTGTGTATA 59.285 34.615 0.00 0.00 0.00 1.47
936 2832 9.845740 TGCCTCTTTTGTGTGTGTATATATATT 57.154 29.630 0.00 0.00 0.00 1.28
944 2840 7.860613 TGTGTGTGTATATATATTTGCACAGC 58.139 34.615 21.24 17.72 37.50 4.40
966 2872 4.980434 GCACATGCAATAGACAAATCCATC 59.020 41.667 0.00 0.00 41.59 3.51
982 2888 7.013655 ACAAATCCATCCTAAATCCAAATCTCG 59.986 37.037 0.00 0.00 0.00 4.04
992 2898 5.368256 AATCCAAATCTCGCATCATTAGC 57.632 39.130 0.00 0.00 0.00 3.09
1033 2939 1.040646 ATTCTATCTTCTCGCCGCCA 58.959 50.000 0.00 0.00 0.00 5.69
1225 3131 2.203788 AGCTCCGTCAAGGGTCCA 60.204 61.111 0.00 0.00 41.52 4.02
1468 3374 1.012841 GTACAGCCTGATGAGCAAGC 58.987 55.000 0.00 0.00 34.05 4.01
1547 3453 0.678950 TGATCGTGTGAAGCTGTGGA 59.321 50.000 0.00 0.00 0.00 4.02
1556 3462 1.762370 TGAAGCTGTGGAGTGTTCTGA 59.238 47.619 0.00 0.00 0.00 3.27
1684 3633 6.060028 ACTTGTACTATGTTGCAAGTTGTG 57.940 37.500 0.00 0.00 46.18 3.33
1685 3634 5.588648 ACTTGTACTATGTTGCAAGTTGTGT 59.411 36.000 0.00 0.00 46.18 3.72
1686 3635 6.094881 ACTTGTACTATGTTGCAAGTTGTGTT 59.905 34.615 0.00 0.00 46.18 3.32
1687 3636 6.443934 TGTACTATGTTGCAAGTTGTGTTT 57.556 33.333 0.00 0.00 0.00 2.83
1688 3637 6.857956 TGTACTATGTTGCAAGTTGTGTTTT 58.142 32.000 0.00 0.00 0.00 2.43
1689 3638 7.316640 TGTACTATGTTGCAAGTTGTGTTTTT 58.683 30.769 0.00 0.00 0.00 1.94
1732 3681 2.618241 GTTGGTCATTGTTGCAGACTCA 59.382 45.455 3.40 0.00 32.98 3.41
1798 3747 9.423061 GCACCATCTTAAAAATGTCATTTAACT 57.577 29.630 11.18 2.65 31.08 2.24
1838 3787 7.485913 GCAACATATGAATCAAACCTAACACAG 59.514 37.037 10.38 0.00 0.00 3.66
1879 3828 9.728100 AAATCCCCTCCAAAAATAATATTCTGA 57.272 29.630 0.00 0.00 0.00 3.27
1950 3900 8.825667 TCTTTCAACCAAAATGTAAAATAGGC 57.174 30.769 0.00 0.00 0.00 3.93
1975 3925 2.194201 AAACACTTACCATCACCCGG 57.806 50.000 0.00 0.00 0.00 5.73
1977 3927 1.813753 CACTTACCATCACCCGGCG 60.814 63.158 0.00 0.00 0.00 6.46
1978 3928 1.985662 ACTTACCATCACCCGGCGA 60.986 57.895 9.30 0.00 0.00 5.54
2017 3967 0.962356 CCACCTTCCCTGCATGACAC 60.962 60.000 0.00 0.00 0.00 3.67
2018 3968 1.003355 ACCTTCCCTGCATGACACG 60.003 57.895 0.00 0.00 0.00 4.49
2019 3969 2.401766 CCTTCCCTGCATGACACGC 61.402 63.158 0.00 0.00 0.00 5.34
2051 4010 0.600255 CCCGCATACCATCCTTCGTC 60.600 60.000 0.00 0.00 0.00 4.20
2052 4011 0.104120 CCGCATACCATCCTTCGTCA 59.896 55.000 0.00 0.00 0.00 4.35
2057 4016 3.627577 GCATACCATCCTTCGTCAAATGT 59.372 43.478 0.00 0.00 0.00 2.71
2091 4050 1.334869 GGGCTATGCTTCCGAAACATG 59.665 52.381 7.19 0.00 0.00 3.21
2126 4087 3.635373 GGTCTACGATGGGTCTATGTTCA 59.365 47.826 0.00 0.00 0.00 3.18
2127 4088 4.098960 GGTCTACGATGGGTCTATGTTCAA 59.901 45.833 0.00 0.00 0.00 2.69
2136 4097 7.696453 CGATGGGTCTATGTTCAACAATAAAAC 59.304 37.037 0.00 0.00 0.00 2.43
2146 4107 7.129622 TGTTCAACAATAAAACTACTCTTGCG 58.870 34.615 0.00 0.00 0.00 4.85
2151 4112 7.448748 ACAATAAAACTACTCTTGCGGAAAT 57.551 32.000 0.00 0.00 0.00 2.17
2171 4132 0.934496 TTTCTGCAACAACGACCTCG 59.066 50.000 0.00 0.00 46.33 4.63
2238 4199 4.035441 GCCACAAAACATCTGTTGCAAAAT 59.965 37.500 0.00 0.00 38.44 1.82
2241 4202 7.520292 GCCACAAAACATCTGTTGCAAAATAAT 60.520 33.333 0.00 0.00 38.44 1.28
2242 4203 8.344098 CCACAAAACATCTGTTGCAAAATAATT 58.656 29.630 0.00 0.00 38.44 1.40
2345 4307 4.193334 CAGATCCGACGGCTCGCA 62.193 66.667 9.66 0.00 38.70 5.10
2360 4322 2.040544 CGCAACCCGGCTGATCTTT 61.041 57.895 0.00 0.00 0.00 2.52
2361 4323 1.586154 CGCAACCCGGCTGATCTTTT 61.586 55.000 0.00 0.00 0.00 2.27
2362 4324 1.459450 GCAACCCGGCTGATCTTTTA 58.541 50.000 0.00 0.00 0.00 1.52
2363 4325 1.401905 GCAACCCGGCTGATCTTTTAG 59.598 52.381 0.00 0.00 0.00 1.85
2364 4326 2.711542 CAACCCGGCTGATCTTTTAGT 58.288 47.619 0.00 0.00 0.00 2.24
2365 4327 2.678336 CAACCCGGCTGATCTTTTAGTC 59.322 50.000 0.00 0.00 0.00 2.59
2366 4328 1.134788 ACCCGGCTGATCTTTTAGTCG 60.135 52.381 0.00 0.00 41.36 4.18
2368 4330 0.931005 CGGCTGATCTTTTAGTCGGC 59.069 55.000 0.00 0.00 44.17 5.54
2369 4331 0.931005 GGCTGATCTTTTAGTCGGCG 59.069 55.000 0.00 0.00 45.48 6.46
2370 4332 0.931005 GCTGATCTTTTAGTCGGCGG 59.069 55.000 7.21 0.00 37.04 6.13
2371 4333 1.470979 GCTGATCTTTTAGTCGGCGGA 60.471 52.381 7.21 0.00 37.04 5.54
2372 4334 2.194271 CTGATCTTTTAGTCGGCGGAC 58.806 52.381 16.09 16.09 43.76 4.79
2373 4335 1.134907 TGATCTTTTAGTCGGCGGACC 60.135 52.381 19.68 3.79 44.54 4.46
2403 4365 6.231211 CACGCCCCAATAGATATAGACTTTT 58.769 40.000 0.00 0.00 0.00 2.27
2405 4367 7.331193 CACGCCCCAATAGATATAGACTTTTAC 59.669 40.741 0.00 0.00 0.00 2.01
2424 4386 2.151202 ACCGAACAAACTATGGTGCAG 58.849 47.619 0.00 0.00 0.00 4.41
2446 4408 2.807967 CAAGAGAACCATGTCGAAGCAA 59.192 45.455 0.00 0.00 0.00 3.91
2460 4422 4.968181 GTCGAAGCAACTTACAAAAAGACC 59.032 41.667 0.00 0.00 0.00 3.85
2462 4424 4.201970 CGAAGCAACTTACAAAAAGACCCA 60.202 41.667 0.00 0.00 0.00 4.51
2473 4435 5.134661 ACAAAAAGACCCAATAACTTCCGA 58.865 37.500 0.00 0.00 0.00 4.55
2497 4459 5.196695 AGAAGGGGTGCTCATTTATCTTTC 58.803 41.667 0.00 0.00 0.00 2.62
2509 4471 8.070769 GCTCATTTATCTTTCGATTAGGAAACC 58.929 37.037 0.00 0.00 32.76 3.27
2516 4478 3.880047 TCGATTAGGAAACCGACACAT 57.120 42.857 0.00 0.00 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 1.060937 CTTGAATGTAGCGTGCGGC 59.939 57.895 0.00 0.00 44.05 6.53
11 12 0.370273 GACTTGAATGTAGCGTGCGG 59.630 55.000 0.00 0.00 0.00 5.69
12 13 1.067693 TGACTTGAATGTAGCGTGCG 58.932 50.000 0.00 0.00 0.00 5.34
13 14 3.747099 ATTGACTTGAATGTAGCGTGC 57.253 42.857 0.00 0.00 0.00 5.34
14 15 5.931532 AGAAATTGACTTGAATGTAGCGTG 58.068 37.500 0.00 0.00 0.00 5.34
15 16 6.560253 AAGAAATTGACTTGAATGTAGCGT 57.440 33.333 0.00 0.00 0.00 5.07
16 17 8.948853 TTAAAGAAATTGACTTGAATGTAGCG 57.051 30.769 0.03 0.00 0.00 4.26
55 56 9.691362 GGTGTGTGTTAATCATGTAATTTCTTT 57.309 29.630 0.00 0.00 0.00 2.52
56 57 8.855110 TGGTGTGTGTTAATCATGTAATTTCTT 58.145 29.630 0.00 0.00 0.00 2.52
57 58 8.402798 TGGTGTGTGTTAATCATGTAATTTCT 57.597 30.769 0.00 0.00 0.00 2.52
58 59 9.289303 GATGGTGTGTGTTAATCATGTAATTTC 57.711 33.333 0.00 0.00 0.00 2.17
59 60 8.250332 GGATGGTGTGTGTTAATCATGTAATTT 58.750 33.333 0.00 0.00 0.00 1.82
60 61 7.395772 TGGATGGTGTGTGTTAATCATGTAATT 59.604 33.333 0.00 0.00 0.00 1.40
61 62 6.889177 TGGATGGTGTGTGTTAATCATGTAAT 59.111 34.615 0.00 0.00 0.00 1.89
62 63 6.241645 TGGATGGTGTGTGTTAATCATGTAA 58.758 36.000 0.00 0.00 0.00 2.41
63 64 5.810095 TGGATGGTGTGTGTTAATCATGTA 58.190 37.500 0.00 0.00 0.00 2.29
64 65 4.661222 TGGATGGTGTGTGTTAATCATGT 58.339 39.130 0.00 0.00 0.00 3.21
65 66 5.641783 TTGGATGGTGTGTGTTAATCATG 57.358 39.130 0.00 0.00 0.00 3.07
66 67 5.336690 GCTTTGGATGGTGTGTGTTAATCAT 60.337 40.000 0.00 0.00 0.00 2.45
67 68 4.022416 GCTTTGGATGGTGTGTGTTAATCA 60.022 41.667 0.00 0.00 0.00 2.57
68 69 4.485163 GCTTTGGATGGTGTGTGTTAATC 58.515 43.478 0.00 0.00 0.00 1.75
69 70 3.258123 GGCTTTGGATGGTGTGTGTTAAT 59.742 43.478 0.00 0.00 0.00 1.40
70 71 2.625790 GGCTTTGGATGGTGTGTGTTAA 59.374 45.455 0.00 0.00 0.00 2.01
71 72 2.235016 GGCTTTGGATGGTGTGTGTTA 58.765 47.619 0.00 0.00 0.00 2.41
72 73 1.039856 GGCTTTGGATGGTGTGTGTT 58.960 50.000 0.00 0.00 0.00 3.32
73 74 0.827507 GGGCTTTGGATGGTGTGTGT 60.828 55.000 0.00 0.00 0.00 3.72
74 75 1.535204 GGGGCTTTGGATGGTGTGTG 61.535 60.000 0.00 0.00 0.00 3.82
75 76 1.228862 GGGGCTTTGGATGGTGTGT 60.229 57.895 0.00 0.00 0.00 3.72
76 77 1.984026 GGGGGCTTTGGATGGTGTG 60.984 63.158 0.00 0.00 0.00 3.82
77 78 2.155197 GAGGGGGCTTTGGATGGTGT 62.155 60.000 0.00 0.00 0.00 4.16
78 79 1.380380 GAGGGGGCTTTGGATGGTG 60.380 63.158 0.00 0.00 0.00 4.17
79 80 2.626467 GGAGGGGGCTTTGGATGGT 61.626 63.158 0.00 0.00 0.00 3.55
80 81 0.993509 TAGGAGGGGGCTTTGGATGG 60.994 60.000 0.00 0.00 0.00 3.51
81 82 0.926293 TTAGGAGGGGGCTTTGGATG 59.074 55.000 0.00 0.00 0.00 3.51
82 83 1.693799 TTTAGGAGGGGGCTTTGGAT 58.306 50.000 0.00 0.00 0.00 3.41
83 84 1.462426 TTTTAGGAGGGGGCTTTGGA 58.538 50.000 0.00 0.00 0.00 3.53
84 85 2.110578 CATTTTAGGAGGGGGCTTTGG 58.889 52.381 0.00 0.00 0.00 3.28
85 86 2.497273 CACATTTTAGGAGGGGGCTTTG 59.503 50.000 0.00 0.00 0.00 2.77
86 87 2.559705 CCACATTTTAGGAGGGGGCTTT 60.560 50.000 0.00 0.00 0.00 3.51
87 88 1.007118 CCACATTTTAGGAGGGGGCTT 59.993 52.381 0.00 0.00 0.00 4.35
88 89 0.631212 CCACATTTTAGGAGGGGGCT 59.369 55.000 0.00 0.00 0.00 5.19
89 90 1.043116 GCCACATTTTAGGAGGGGGC 61.043 60.000 0.00 0.00 0.00 5.80
90 91 0.397114 GGCCACATTTTAGGAGGGGG 60.397 60.000 0.00 0.00 0.00 5.40
91 92 0.334676 TGGCCACATTTTAGGAGGGG 59.665 55.000 0.00 0.00 0.00 4.79
92 93 1.005924 AGTGGCCACATTTTAGGAGGG 59.994 52.381 36.39 0.00 0.00 4.30
93 94 2.514458 AGTGGCCACATTTTAGGAGG 57.486 50.000 36.39 0.00 0.00 4.30
94 95 4.082125 AGAAAGTGGCCACATTTTAGGAG 58.918 43.478 36.39 0.00 36.76 3.69
95 96 4.112634 AGAAAGTGGCCACATTTTAGGA 57.887 40.909 36.39 0.00 36.76 2.94
96 97 4.399303 CCTAGAAAGTGGCCACATTTTAGG 59.601 45.833 36.42 36.42 39.10 2.69
97 98 5.010282 ACCTAGAAAGTGGCCACATTTTAG 58.990 41.667 36.39 32.81 36.76 1.85
98 99 4.993028 ACCTAGAAAGTGGCCACATTTTA 58.007 39.130 36.39 26.94 36.76 1.52
99 100 3.844640 ACCTAGAAAGTGGCCACATTTT 58.155 40.909 36.39 27.62 38.96 1.82
100 101 3.525800 ACCTAGAAAGTGGCCACATTT 57.474 42.857 36.39 29.42 0.00 2.32
101 102 3.525800 AACCTAGAAAGTGGCCACATT 57.474 42.857 36.39 31.10 0.00 2.71
102 103 4.042934 ACTTAACCTAGAAAGTGGCCACAT 59.957 41.667 36.39 24.14 34.70 3.21
103 104 3.393278 ACTTAACCTAGAAAGTGGCCACA 59.607 43.478 36.39 15.59 34.70 4.17
104 105 4.017177 ACTTAACCTAGAAAGTGGCCAC 57.983 45.455 29.22 29.22 34.70 5.01
105 106 5.829062 TTACTTAACCTAGAAAGTGGCCA 57.171 39.130 0.00 0.00 36.62 5.36
106 107 5.999600 TGTTTACTTAACCTAGAAAGTGGCC 59.000 40.000 0.00 0.00 36.62 5.36
107 108 7.389607 TCATGTTTACTTAACCTAGAAAGTGGC 59.610 37.037 12.60 6.01 36.62 5.01
108 109 8.842358 TCATGTTTACTTAACCTAGAAAGTGG 57.158 34.615 12.60 0.00 36.62 4.00
144 145 6.550843 CCACACATATCATAAGTGCGAAAAA 58.449 36.000 0.00 0.00 36.76 1.94
145 146 5.448496 GCCACACATATCATAAGTGCGAAAA 60.448 40.000 0.00 0.00 36.76 2.29
146 147 4.035091 GCCACACATATCATAAGTGCGAAA 59.965 41.667 0.00 0.00 36.76 3.46
147 148 3.559655 GCCACACATATCATAAGTGCGAA 59.440 43.478 0.00 0.00 36.76 4.70
148 149 3.130633 GCCACACATATCATAAGTGCGA 58.869 45.455 0.00 0.00 36.76 5.10
149 150 2.096762 CGCCACACATATCATAAGTGCG 60.097 50.000 0.00 0.00 36.76 5.34
150 151 2.224079 CCGCCACACATATCATAAGTGC 59.776 50.000 0.00 0.00 36.76 4.40
151 152 2.807967 CCCGCCACACATATCATAAGTG 59.192 50.000 0.00 0.00 39.12 3.16
152 153 2.810400 GCCCGCCACACATATCATAAGT 60.810 50.000 0.00 0.00 0.00 2.24
153 154 1.806542 GCCCGCCACACATATCATAAG 59.193 52.381 0.00 0.00 0.00 1.73
154 155 1.875996 CGCCCGCCACACATATCATAA 60.876 52.381 0.00 0.00 0.00 1.90
155 156 0.320334 CGCCCGCCACACATATCATA 60.320 55.000 0.00 0.00 0.00 2.15
156 157 1.597854 CGCCCGCCACACATATCAT 60.598 57.895 0.00 0.00 0.00 2.45
157 158 2.203001 CGCCCGCCACACATATCA 60.203 61.111 0.00 0.00 0.00 2.15
158 159 2.972505 CCGCCCGCCACACATATC 60.973 66.667 0.00 0.00 0.00 1.63
215 216 0.248296 GACAACTCGCGCCAAAAACA 60.248 50.000 0.00 0.00 0.00 2.83
241 271 2.435234 GAACGCCCGCCACACATA 60.435 61.111 0.00 0.00 0.00 2.29
255 285 1.516603 GCGGTGAGCTCTACGGAAC 60.517 63.158 24.59 10.95 44.04 3.62
256 286 2.882876 GCGGTGAGCTCTACGGAA 59.117 61.111 24.59 0.00 44.04 4.30
266 296 3.520290 TTATCAGTAACCAGCGGTGAG 57.480 47.619 17.83 8.87 35.34 3.51
267 297 3.857052 CTTTATCAGTAACCAGCGGTGA 58.143 45.455 17.83 0.00 35.34 4.02
268 298 2.351726 GCTTTATCAGTAACCAGCGGTG 59.648 50.000 7.86 7.86 35.34 4.94
269 299 2.027561 TGCTTTATCAGTAACCAGCGGT 60.028 45.455 0.00 0.00 37.65 5.68
272 302 3.375299 CCACTGCTTTATCAGTAACCAGC 59.625 47.826 0.00 0.00 44.81 4.85
370 403 5.696724 ACATAGTAGTGGCGAGCAATATTTC 59.303 40.000 0.00 0.00 0.00 2.17
394 427 1.881591 GTACAAAACAGTACCCGGCA 58.118 50.000 0.00 0.00 38.70 5.69
415 458 6.150474 GCCATTTTGGAAAAGTAGTACTAGCA 59.850 38.462 1.87 0.00 40.96 3.49
422 465 4.039124 CCACTGCCATTTTGGAAAAGTAGT 59.961 41.667 0.00 0.00 40.96 2.73
438 481 4.058817 GCTACATATTACTCACCACTGCC 58.941 47.826 0.00 0.00 0.00 4.85
486 2370 6.151144 ACATGCACTATTGGGAAAAGAAGTAC 59.849 38.462 0.00 0.00 0.00 2.73
491 2375 4.922206 AGACATGCACTATTGGGAAAAGA 58.078 39.130 0.00 0.00 0.00 2.52
501 2385 3.465742 AATCAGCGAGACATGCACTAT 57.534 42.857 0.00 0.00 33.85 2.12
553 2441 6.839820 AATAAACCGAGTATTGGAATCGAC 57.160 37.500 0.00 0.00 45.05 4.20
554 2442 9.850628 CTATAATAAACCGAGTATTGGAATCGA 57.149 33.333 0.00 0.00 45.05 3.59
782 2676 4.020543 ACCAAACAGCAAAAGTAGGTGAA 58.979 39.130 0.00 0.00 37.86 3.18
821 2715 1.365699 GTGGTACGGTAGTTGCATGG 58.634 55.000 0.00 0.00 0.00 3.66
822 2716 0.996462 CGTGGTACGGTAGTTGCATG 59.004 55.000 0.00 0.00 38.08 4.06
823 2717 3.429043 CGTGGTACGGTAGTTGCAT 57.571 52.632 0.00 0.00 38.08 3.96
824 2718 4.970392 CGTGGTACGGTAGTTGCA 57.030 55.556 0.00 0.00 38.08 4.08
864 2758 2.289565 GTTTAGGTATGGCCAGCTGAC 58.710 52.381 17.39 2.25 40.61 3.51
874 2768 3.119990 CGGTTGTTGCTGGTTTAGGTATG 60.120 47.826 0.00 0.00 0.00 2.39
908 2802 6.892658 ATATACACACACAAAAGAGGCAAA 57.107 33.333 0.00 0.00 0.00 3.68
944 2840 5.301045 AGGATGGATTTGTCTATTGCATGTG 59.699 40.000 0.00 0.00 0.00 3.21
966 2872 5.954296 ATGATGCGAGATTTGGATTTAGG 57.046 39.130 0.00 0.00 0.00 2.69
982 2888 4.092529 CGTCATGGTGATAGCTAATGATGC 59.907 45.833 10.26 0.00 30.10 3.91
992 2898 1.299541 GGTTGCCGTCATGGTGATAG 58.700 55.000 0.00 0.00 41.21 2.08
1033 2939 2.045926 GGTGGTGGCAGCGAGAAT 60.046 61.111 12.58 0.00 0.00 2.40
1093 2999 1.101635 TCGTGGATGTAGAGGCGGAG 61.102 60.000 0.00 0.00 0.00 4.63
1547 3453 3.572682 TGTAGGACGAACATCAGAACACT 59.427 43.478 0.00 0.00 0.00 3.55
1584 3490 1.001641 GCACACCCCTCTCAAGCAT 60.002 57.895 0.00 0.00 0.00 3.79
1688 3637 7.840342 ACACAACTTGCAATGATGTTAAAAA 57.160 28.000 7.04 0.00 0.00 1.94
1689 3638 7.201591 CCAACACAACTTGCAATGATGTTAAAA 60.202 33.333 14.44 0.00 0.00 1.52
1690 3639 6.257411 CCAACACAACTTGCAATGATGTTAAA 59.743 34.615 14.44 0.00 0.00 1.52
1691 3640 5.752472 CCAACACAACTTGCAATGATGTTAA 59.248 36.000 14.44 0.00 0.00 2.01
1692 3641 5.163468 ACCAACACAACTTGCAATGATGTTA 60.163 36.000 14.44 0.00 0.00 2.41
1693 3642 4.121317 CCAACACAACTTGCAATGATGTT 58.879 39.130 7.04 9.27 0.00 2.71
1694 3643 3.132646 ACCAACACAACTTGCAATGATGT 59.867 39.130 7.04 6.57 0.00 3.06
1695 3644 3.719924 ACCAACACAACTTGCAATGATG 58.280 40.909 7.04 4.33 0.00 3.07
1696 3645 3.384146 TGACCAACACAACTTGCAATGAT 59.616 39.130 7.04 0.00 0.00 2.45
1697 3646 2.757314 TGACCAACACAACTTGCAATGA 59.243 40.909 7.04 0.00 0.00 2.57
1698 3647 3.162202 TGACCAACACAACTTGCAATG 57.838 42.857 0.00 0.00 0.00 2.82
1699 3648 4.121317 CAATGACCAACACAACTTGCAAT 58.879 39.130 0.00 0.00 0.00 3.56
1700 3649 3.056250 ACAATGACCAACACAACTTGCAA 60.056 39.130 0.00 0.00 0.00 4.08
1701 3650 2.495270 ACAATGACCAACACAACTTGCA 59.505 40.909 0.00 0.00 0.00 4.08
1702 3651 3.163630 ACAATGACCAACACAACTTGC 57.836 42.857 0.00 0.00 0.00 4.01
1703 3652 3.306703 GCAACAATGACCAACACAACTTG 59.693 43.478 0.00 0.00 0.00 3.16
1704 3653 3.056250 TGCAACAATGACCAACACAACTT 60.056 39.130 0.00 0.00 0.00 2.66
1705 3654 2.495270 TGCAACAATGACCAACACAACT 59.505 40.909 0.00 0.00 0.00 3.16
1706 3655 2.859538 CTGCAACAATGACCAACACAAC 59.140 45.455 0.00 0.00 0.00 3.32
1707 3656 2.757314 TCTGCAACAATGACCAACACAA 59.243 40.909 0.00 0.00 0.00 3.33
1708 3657 2.098934 GTCTGCAACAATGACCAACACA 59.901 45.455 0.00 0.00 0.00 3.72
1709 3658 2.358898 AGTCTGCAACAATGACCAACAC 59.641 45.455 0.00 0.00 0.00 3.32
1808 3757 9.369904 GTTAGGTTTGATTCATATGTTGCAATT 57.630 29.630 0.59 0.00 0.00 2.32
1838 3787 9.807921 TGGAGGGGATTTTTAGAATATCATAAC 57.192 33.333 0.00 0.00 0.00 1.89
1940 3889 7.758076 GGTAAGTGTTTTCCATGCCTATTTTAC 59.242 37.037 0.00 0.00 0.00 2.01
1949 3899 4.485163 GTGATGGTAAGTGTTTTCCATGC 58.515 43.478 3.58 0.00 42.48 4.06
1950 3900 4.082245 GGGTGATGGTAAGTGTTTTCCATG 60.082 45.833 3.58 0.00 42.48 3.66
2017 3967 4.785453 GGGCCCTCACTTGGAGCG 62.785 72.222 17.04 0.00 42.62 5.03
2018 3968 4.785453 CGGGCCCTCACTTGGAGC 62.785 72.222 22.43 0.00 42.62 4.70
2019 3969 4.785453 GCGGGCCCTCACTTGGAG 62.785 72.222 22.43 0.92 43.65 3.86
2068 4027 1.140252 GTTTCGGAAGCATAGCCCCTA 59.860 52.381 0.00 0.00 0.00 3.53
2091 4050 0.804989 GTAGACCATTGCAGCACCAC 59.195 55.000 0.00 0.00 0.00 4.16
2126 4087 6.870971 TTCCGCAAGAGTAGTTTTATTGTT 57.129 33.333 0.00 0.00 43.02 2.83
2127 4088 6.870971 TTTCCGCAAGAGTAGTTTTATTGT 57.129 33.333 0.00 0.00 43.02 2.71
2136 4097 4.083324 TGCAGAAAATTTCCGCAAGAGTAG 60.083 41.667 13.55 0.00 39.91 2.57
2146 4107 3.489416 GGTCGTTGTTGCAGAAAATTTCC 59.511 43.478 1.57 0.00 0.00 3.13
2151 4112 1.329292 CGAGGTCGTTGTTGCAGAAAA 59.671 47.619 0.00 0.00 34.11 2.29
2253 4215 8.109705 TGCAGAATTATTTCTACAACACATGT 57.890 30.769 0.00 0.00 46.36 3.21
2263 4225 9.013229 ACATGTCTTGTTGCAGAATTATTTCTA 57.987 29.630 0.00 0.00 36.08 2.10
2293 4255 4.166011 GCGCGTCTCCACCATTGC 62.166 66.667 8.43 0.00 0.00 3.56
2325 4287 4.593864 GAGCCGTCGGATCTGCCC 62.594 72.222 22.03 0.00 34.95 5.36
2345 4307 2.677037 CGACTAAAAGATCAGCCGGGTT 60.677 50.000 1.64 0.00 0.00 4.11
2360 4322 2.045438 TACGGGTCCGCCGACTAA 60.045 61.111 9.55 0.00 44.19 2.24
2361 4323 2.514592 CTACGGGTCCGCCGACTA 60.515 66.667 9.55 0.00 44.19 2.59
2372 4334 2.989055 CTATTGGGGCGTGCTACGGG 62.989 65.000 10.02 0.00 42.82 5.28
2373 4335 1.594293 CTATTGGGGCGTGCTACGG 60.594 63.158 10.02 0.00 42.82 4.02
2403 4365 3.331150 CTGCACCATAGTTTGTTCGGTA 58.669 45.455 0.00 0.00 0.00 4.02
2405 4367 1.135689 GCTGCACCATAGTTTGTTCGG 60.136 52.381 0.00 0.00 0.00 4.30
2417 4379 0.111061 ATGGTTCTCTTGCTGCACCA 59.889 50.000 0.00 5.78 41.74 4.17
2424 4386 1.129437 GCTTCGACATGGTTCTCTTGC 59.871 52.381 0.00 0.00 0.00 4.01
2446 4408 7.255346 CGGAAGTTATTGGGTCTTTTTGTAAGT 60.255 37.037 0.00 0.00 0.00 2.24
2473 4435 4.870021 AGATAAATGAGCACCCCTTCTT 57.130 40.909 0.00 0.00 0.00 2.52
2497 4459 3.489785 GCTATGTGTCGGTTTCCTAATCG 59.510 47.826 0.00 0.00 39.23 3.34
2509 4471 0.249489 GCTACCCCTGCTATGTGTCG 60.249 60.000 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.