>input_sequence_77208
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-------------------------ATGACGGCAACCATATTCTATCTTCTCGCCGCCATTCTCGCTGCCACCACCGGGA
CGCTGGCTGCCGGCGCCGGGGACGACGGCATGACGCACCTCCGCCTCTACATCCACGAGACATTCTCTGGCGCCAACGCC
ACTGCGGTCCATGTCACGGCCTCCCCGCTCGGGGGCAACTCCACGTACGGCACCCTCAGCGTCTTCGACGACGAGCTCCG
TCAAGGGTCCAACGCGGCGTCGCAGCTCGTTGGCCGCGCCCAGGGGATCAGCATGCAGGCCGACCTGCAGGACTCCGGGG
TGTTCTCCACGCTCCTCACCGTGGTGTTCACTAACGGGGGCTATAAGGGCAGCACGCTGGTGCTGGGCGGCCGCGTCGAC
TTCGGCCCGGACGGGAAGGCGGCGGCGGAGAGGGCCGTGGTCGGTGGCACGGGCAGGTTCCGGCTGGCGAGGGGGTACAG
CCTGATGAGCAAGCTCGGCGCCACGTCGAGCACCGCCGTCTTAAAGTTGGACCTCTATGTCAAGACGGACGTTTGA----
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>chr5B_1_TraesCS5B01G080000
ACGGAATATCGCCGCACGCTACATTCAAGTCAATTTCTTTAAATCATTTGAACTTAAAGAAATTACATGATTAACACACA
CCATCCAAAGCCCCCTCCTAAAATGTGGCCACTTTCTAGGTTAAGTAAACATGATTTTTCAAGTTTTTTCGCACTTATGA
TATGTGTGGCGGGCGGCCCACAATGCCCGCCATTGCAAACTTTTGGAATTTTGAATGTTTTTGGCGCGAGTTGTCGAAGG
-----------------------------ATATGTGTGGCGGGCGTTCCGTAGAGCTCACCGCTGGTTACTGATAAAGCA
GTGGCGGGCGTTTCATACCGACCGCCACTACTGTTTT-CATCCTATAGGG-ATCTTGAGAAGA-TTTACTTGTGGCGGGT
CCGAAATATTGCTCGCCACTACTATGTGC----------CGGGTACTGTTTTGTACCTGCTAGTACTACTTTTCCAAAAT
GGCAGTGGTGAGTAATATGTAGCGCTCGCCACTCATTTGAGGTCAC----------------------------------
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-----------------------------------------------TTGTACTTCTTTTCCCAATAGTGCATGTCTCGC
TGATTAA----TACATGATTTTAAATTGATAGGATAATAGGTCGATTCCAATACTCGGTTTATTATAGTAATTATAGCCA
TGTTCATCACAAAGAGGT---GTCTTTCAAATTTAGGTCATGTAATCGATTTTTCCTCTTTACAGAAATTAACCCTA-CC
CTATCGTGTG--AAGGTGGACAATGTGGGACTGCTGCTGACCTATCATGGTTGGTGTCCACCATTTTTGGTGCCAAAAGG
AGGACAATGCGGCACGATTACTCCACCAGCTACAATTCACCTACTTTTGCTGTTTGGTGTTCACTGATGCCACTCCATGC
AACTACCGTACCACGTGCAGCAGCATCCGCTATTATCGTCAGCTGGCCATACCTAAACCAGCAACAACCGCCAAAACAAG
ATTTGCCTC--TTTTGTGTGTGTATATATATTTGCACAGCACATGCA----------ATAGACAAATCCATCCTAAATCC
AAATCTCGCATCATTAGCTATCACCATGACGGCAACCATATTCTATCTTCTCGCCGCCATTCTCGCTGCCACCACCGGGA
CGCTGGCTGCCGGCGCCGGGGACGACGGCATGACGCACCTCCGCCTCTACATCCACGAGACATTCTCTGGCGCCAACGCC
ACTGCGGTCCATGTCACGGCCTCCCCGCTCGGGGGCAACTCCACGTACGGCACCCTCAGCGTCTTCGACGACGAGCTCCG
TCAAGGGTCCAACGCGGCGTCGCAGCTCGTTGGCCGCGCCCAGGGGATCAGCATGCAGGCCGACCTGCAGGACTCCGGGG
TGTTCTCCACGCTCCTCACCGTGGTGTTCACTAACGGGGGCTATAAGGGCAGCACGCTGGTGCTGGGCGGCCGCGTCGAC
TTCGGCCCGGACGGGAAGGCGGCGGCGGAGAGGGCCGTGGTCGGTGGCACGGGCAGGTTCCGGCTGGCGAGGGGGTACAG
CCTGATGAGCAAGCTCGGCGCCACGTCGAGCACCGCCGTCTTAAAGTTGGACCTCTATGTCAAGACGGACGTTTGATCGT
GTGAAGCTGTGGAGTGTTCTGATGTTCGTCCTACAACGAGGTTGTGCTTA------------------------------
---------TGCTTGAG-AGGGGTGTGC---TGTGTGTTTAAATTTTACGAAACCGGGCGTGTTTATACTGTATTTTTTC
GTTAAACAAACTTGTACTATGTTGCAAGTTGTGTTTTTTTTAACATCATTGCAAGTTGTGTTGGTCATTGTTGCAGACTC
AAACTTCTATGTTCACAAATAAATGACGCTTTCGATATTGGCACCATCTTAAAAATGTCATTTAACTACTAGTTTTAATT
GCAACATATGAATCAAACCTAACACAGTTATGATATTCTAAAAATCCCCTCCAAAAATAATATTCTGAAAATGTACTTAT
GAAGGCAAATTCATACATAAGATTTTCTTTTAATCTTTCAACCAAAATGTA-AAATAGGCATGGAAAACACTTACCATCA
CCCGGCGAATCGCAGCGGTCGCGTCCGCCACCTTCCCTGCATGACACGC---------TCCAAGTGAGGGCCCGCATACC
ATCCTTCGTCAAATGTGCTTCTGCAATAGGGGCTATGCTTCCGAAACATGT--GGTGCTGCAATGGTCTACGATGGGTCT
ATGTTCAACAATAAAACTACTCTTGCGGAAATTTTCTGCAACAACGACCTCGGTTGCAAAAAAAATTACAAGAAAACCTC
AGTTGCAAAAAAATTGCCACAAAACATCTGTTGCAAAATAATTAT-GCAACAAGACATGTGTTGTAGAAATAATTCTGCA
ACAAGACATGTGTTGCAATGGTGGAGACGCGCTCGGCCGCTCGATAGGGCAGATCCGACGGCTCGCAACCCGGCTGATCT
TTTAGTCGGCGGACCCGTAGCACGCCCCAATAGATATAGACTTTTACCGAACAAACTATGGTGCAGCAAGAGAACCATGT
CGAAGCAACTTACAAAAAGACCCAATAACTTCCGAAGAAGGGGTGCTCATTTATCTTTCGATTAGGAAACCGACACATAG
CAGGGGTAGCGA
>chr5A_163
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--TGTGTGACGGGCAGTCCACAATGCCCGCCATTGCAAACTTTTGGAATTTTGAACGTTTTTGGCAAGAGTCGTCGAAGG
-----------------------------A-----------------------------CCACCGGTTACTGATAAAGCA
ATGGCAGGCGTTCCATACCGACCGCCACTACTGTTTTTCACCCTGTGGGG-ATCTTGAGAAGAGTTTACTTGTGGCGGGT
CCTAAATATTGCCCGCCGCTACTATGCTTAAAGCACTGTTGGGTACTATTTTGTACCCGCCAGTGCTACTTTTCCAAAAT
AGTAGTGGTGAGTAATATGTAGCGCTCGCCACTCATTTGAGGTCAT----------------------------------
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-----------------------------------------------TTATACTCCTTTTTTCAGTAGTGCATGTCTCCC
TGATTAGAAAATACATAATTTTAAATTGATAGAATAATAGACCGATTCCAATACTCGATTTATTATAGTAATTATAGCCA
TGTTCATCACAAAAAGGTGATGTCTTTCAAATTTAGGTCATGTAATCGATTTTTCCTCTTTACAGAAATTAACCCTAACC
CTATCGTGTCAAAAGGCGGACAATGTGGGACGGCTGCAGACCTATCATGGTTGGTGTCCACCATTTTTGGTGCCAAAAGG
AGGACAATGCGGCACTATTACTCCACCAGCTACAACTCACCTACTTTTGCTGTTTGGTGTTCACGGATGCCACT----GC
AACTACCGTACCACGTGCGGCAGCATCC-CTATTATCATCAGCTGGCGATACCTAAACCAGCAACAACCGCCAAAACAAA
ACTTGCCTC--TTTTGTGTGTGTGTGTATATATATGCGGAGCATATGCAAGGCTCACATAGACAAATCCATTCTAAATCC
AAATCTCACATCACTAGTTATCACCATGACGGCGACCACATTCTGCCTTCTTGCCGCCGTTCTCGCTGCCACCACCGGGA
CGCTGGTTGCCGGCGCCGGGGGGGACGGCACAACGCACATCCGCCTCTACATCCACGAGACATTCTCTGGCGCCAACGCC
ACTGCGGTCCATGTCACGGACTCCCCGCTCGGGGGCAACTCCACGTACGGCACGCTCAGCGTCTTCGACGACGAGCTCCG
TCAAGGGTCCGACGCGGCGTCGCAGCTCGTCGGCCGCGCCCAGGGGATCACCATGCAGGCCGACCTACAGGACTCCGGGG
TGTTCTCCACGCTCCTCACCGTGGTGTTCACGAACGGGGGCTATAAGGGCAGCACCCTGGTGCTGGGCGGCCGCGTCGAC
TTCGGCCCGGACGGGAAGGCGGCGGCGGAGCGGGCCGTGGTCGGTGGCACGGGCAGGTTCCGGCTGGCGAGGGGGTACAG
CCTGATGAGCAAGTTCGGCGCCACGTCGAGCACCGCCGTCTTAAAGTTGGACCTCTATGTCAAGACGGACGTTTGATCGT
GTGAAGCTATGGTGTGTTCTGCTGTTCGTCCTACAACGAGGTTGTGCTTGCGCTTCTTTCTTTTCCTTTTTTTTGCATGG
TTGTGCTTGTGCTTGAG-AGGGCTGTGCTGTTGTGTGTTTAAATTTTACGAAACCGGGCGTGTTTATACTGTATTTTTTC
GTTAAACAAACTTGTACTATGTTGCAAGTTG---------------------------TGTTGGTCATTGTTGCAGACTC
GAACTTCTATGTTCACAAATAAATGACGCTTTCGATATTGGCACCATCTTAGAAATGTCATTTAACCACTAGTTTTTATT
GCAACATATGAACAAAACCTAACACAATTATGATATTTTAAAGATCCCCTCCAAAAATAATATTCTGGAAATGTACTTAT
GAAGGCAAATTCATGCCTAAGATTTTCTTTTAATATTTCAACCAAAATATACAAATAGATATGGAAAACACTTATCATCA
CCCGACAGATCGCAGCGGTCGCGTCCGCCACCTTCCCTGCATGACAACATGACAGACGTCCAAGTGAGGGCCCACATACC
----TTCGTTGAATGCGCTTCTGCAACAAGGGTTATGCTTCCGAAATATATGCGATACTGCAATGGTCTACGATGGGTCA
ATGTTCTGCAATAAAAATACTCTTGCAGAAAATTTCTACAACAACGACCTTAGTTGCAAAAAAAATTACAAGAAAACCTC
AGTTGCAAAAAAATTGCAAAAAAACAACGGTTGCAAAAAA-------------------------------AATTCTGCA
ACAAGACATGTGTT------------------------------------------------------------------
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>chr5D_163
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--TGTGTGACGGGCAGCCCACAATGCCCGCCATTGCAAACTTTTGGAATTTTGAACGTTTT-GGCGCGAGTTATCGAAGG
ATATGTGTGGCGGGTGTTCCGTATAGCCCA-----------------------------CCATTGGTTAATGATAAAGCA
GTGGCGGACGTTTCATATCGACCGCCACTACTATTTTTCACCCTGTGGGGGATCTTGAAAAGAGTTTACTTGTGGCGGAT
TTTAAATATTGCCCACCACTACTATGCTTATAGCAGTGTCGGGTACTGTTTTGTACCCGCTAGTGCTACTTTTTCAAAAT
AACAGCGGTGAGTAATATGTAGCGCTCGCCGCTCCTTTGAGGTCACTTGGTGCCTCCTAGGTTCATCTTATAGGCTGCGT
GGGATGTTCTTATAGGCTACTGCATCCTGTGAACCTGGACCGTGGTGCGTCCTAGGTTCATCTTGCACGCGCGCGGTGAC
GGCCCGACGCGGCTCGGCACGGCGCTGCCTGTGTGCAAGGAGCGGAGGATAGAGGCGGGTTGGGGGTTTGGGGGTCGGAG
CGACGGACGGAGCATTGGGAAGAGAGGAGAACAAACAATATGGAAAGACAATGTCAAAACGGCCCACAAGGCCGAAAATC
AACCAGGGCCGGCCCGCAACCGTGTTGCTTATATGGGTCGTGCTTTGGAGGCCGGCCATGGGAACAAATATATGGCCAGG
CACGGGCTTCGCAATGATGGACGATTAAAAGGGTCGGGCCGGCCGTCGGTCGAACACAAAACAAGGACGGTATCCGAAGC
CGCTTTAAGGCCAACTCCAGCGCGCGACCTCATCTTGTCCGGGTGTGTCCGTTTGGGGTAAAACAGACAAATTAGACGGC
CCAGCGCGCGGGCGCAAACGGACTTTGTCTGTTTTCTGTCCTCTTTCGACCCATCCCCGGCCCAAGTTTGGTCCGCTTTT
GGAATGAAACGGACAGCGCGCGGACGGGCGGGTCGTGTGCGCGTGTCCTCCCCTGACCCGCCCGTCGGTGGCACAGGGAC
GCCTTTTTCTATCCGCCCCCTCCCTCCCTCCGGCCGTACCCCCTCCACTCTTCTCCACTCTTCTCCCTCGTCGCCGTCGC
CGCCGCCGTCATTGCAGCTGTGCAGTTCGGACGCGCGCTGGCCCATCCCCTTCCCCTCGACGCCCACGAGCTACCCAACC
CCGACCACCCCACGGCCGGATTTGGAGCGGATCCGGTCGGTCTTGAGCTCGCCCGACTGTGGGAGGCCGTGCAGCGCCAT
GGACTGGCCGGGCATGGGGCCTTCCGGCCCCGGCAAGGCCGCAAGGCCGCATGCAGGTAGTGGCTCCTCCTCTAGCCGCT
CGGATCTACACCGTCGGTGGTCCGCCTGCAGATACACGAATGGTGGTCGGCCGGGCTCGGTGCTAGCCCAAAAGCTCGTC
GGTGCACCGTTGCCACTCGTTAAGTGCGACGGCTGCACAAAGAAGGTCGTGCGCCGCGTGTCTACAATCCTGGAACATCC
CGGATGGGTGTTCATGAAGTGCTTAAACGATGAGGTATGTGCTACTTTTTAGCTTCGATTGTGCTCTAGGATTTGACTAG
TTGTGCTAACTTAAAATTTTATTGTGTAGAATGGATGCAAGTTTTGGTTTTGGGAAGAAGAGTACATTGATATATTGATA
GAAAGCAATTTAGTAGATGTTCGTGCACTTTTAGCTAGCATAGAGGCCAGAGATGAGACTAGTGCACTTGTTGCCAGAAT
AGAGGCTAGACATGAGACTAGATGCGAGAAAGCAACGTCTACTTCTTTAGGCTCGAAGAAGAAAGAAGCACGCAAGACCG
AGCCTCCTCCACAAATTAACAATGAATGCATCGAGAAGGCACTAATCCAACTTACATGAGCAGTTATGGAAGTTGGATAT
CTTCTAAAATGTATTCTTATGGTTCTTCTTTTCTTAATTTGATCTTACTTTTCTAGTCAACATTTGGTGATGTATTCTCA
TGTACCAAAAATCAATGATGAAAAAAAAAGTTATGGACTTGCAAAGAAAAGTGTACGCGGACAGGATGCGGCCGGGATGC
GTCCGTTCGTTGGGCGCACGGCCACCGCATCCCAGAAACTGCCCGGACACGACCCCATTGCCCTACCCAAACGGACAGAA
TTCGGGCAAAACGGACGTCCGTTTGGGGTCGTGCGCTGGAGTTGGCCTTATACTCCTTTTCCCAGTAGTGCATGTCTTGC
TGATTAGAAATTACATAATTTTAAATTGATAGGATAGTAGACCGATTCCAATATTCTATTTATTATAGTAATTATAGCCA
TGTTCATCACAAAGAGGTGATGTCTTTCAAATTTAAGTCAGGTAATTGATTTTTCTTCTTTACAGAAATTAACCCTA-CC
CTATCGTGTG--AAGGTGGACAATGTGGGACTGCTGCTGACCTATCATGGTTGGTGTCCACCATTTTTGGTCCCAAAAGG
AGGATAATGCGGCACGATTACTCCACCAGCTACAACTCACCCGCTTTTGCTGTTTGGTGTTCACTGATGCCACT----GC
AACTACCGTACCACGTGCGTCAGCATCCGCTATTATC-----------ATACCTAAACCAGCAACAACCGCCAAAACAAG
ACTTGCCTCTTTTGTGTGTGTGTGTGTGTATATGCACAGTATATGCA----------ATAGACAAATCCATTCTAAATCC
AAGTCTCACATCATTAGTTATCACCATGACGGCAACCATATTCTATCTTCTCGCCGCCGTTCTCGCTGCCACCACCGGGA
CGCTGGTTGCCGGCGCTGGGGACGACGGCACGACGCACATCCGCCTCTACATTCACGAGACGTTCTCTGGCGCCAACGCC
ACCGCGGTCCATGTCACAGACTCCCCGCTCGGGGGCAACTCCACGTACGGCACCCTCAGCGTCTTCGACGACGAACTCCG
TCAAGGGTCCGACGCGGCGTCGCAGCTCGTCGGCCGCGCCCAGGGGATCACCATGCAGGCCGACCTGCAGGACTCCGGGG
TGTTCTCCACGCTCCTCACCGTGGTGTTTACTA-----------------------------------------------
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>chr5D_1322
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--------------------------TTCACCGACGGGGGCTATAAGGGCAGCACGCTGGTGCTGAGCGGCCGCGTCGAC
TTCGGCCCGGACGGGAAGGCGGCGGCGGAGCGGGCCGTGGTCGGTGGCACGGGCAGGTTCCGGCTGGCGAGGGGGTACAG
CCTGATGAGCAAGTTCGGCACCACGTCGAGCACCGCCGTCTTAAAGTTGGACCTCTATGTCAAGACGGACGTTTGATCGT
GTGAAGCTGTGGTGTGTTCTGCTGTTCGTCCTACAACGAGGTTGTGCTTGTGTTTTT---------TTTCTTTTGCATGG
TTGTGCTTGTGCTTGAGAAGGGGTGTGCTGTTGTGTGTTTAAATTTTACGAAACCGGGCGTGTTTATACTGTATTTTCTC
GTTAAACAAACTTGTA---TGTTGCAAGTTG---------------------------TGCTGGTCATTGTTGCAGACTC
GAACTTCTATGTTCACAAATAAATGACGCTTTCGATATTGGCACCATCTTCAAAATGTCATTTAACCACTAGTTTTTGTT
GCAACATATGAACAGAACCTAACACAATTATGATATTCTAAAAATCCCCTCCAAAAATAATATTCTGGAAATGTACCTAT
GAAGGCAAATTCATACATAAGATTTTCTTTTAATCTTTCAACCAAACTATACAAATAGATATAGAAAACACTTACCATCA
CCCACCAGATCGCAGCGGTCGCGTCCGCCACCTTCCCTGCATGACAGCATGACAGACGTCCAAGTGAGGGCCCGCATACC
ATCCTTCGTTGAATGCGCTTCTGCAGCAGGGGCTATGCTTCCGGAACATATGCGGTGCTGCAATGGTCTACGATGGGTCT
ATGTTCTGCAATAAAATTACTCTTGCAAAAAATTTCTGCAACAACGACCTCAGTTGCA----------------------
------AAAAAAATTGCAACAAAACAACTGTTGCAAAAAAAAATCCGCAACAAGTCCTGTGTTGCAGAAATAATTCTGCA
ACAAGACATGTGTTTCAATGGTGGAGACGCGCTCGGCCGCTCGATGCGGCAGATCTGACGGCTCGCGACCCGGCTGATCT
TGCG-----------CGTAGCACGCCCCAATAGATATAGACTTTAA-CGAACAAACTAGGGTGCATCAAGAGAACCATGT
CGAAGCAGCTTACAAAAAGACAC-ATAACTTCCGTAGAAGGGGTGCTCATTTATCTTTTGATTAGGAAACTGACACAGAG
CAGGGGTAGCGA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS------S-----S----------------------------------------S------------------------
------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S------------------
----------------------------------------S---S-S---------------------------------
--S---------S-------------SSS----------------------------S------S---------------
S-------------------------------------------------------------------------------
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-------------------------------------------------S----S---------S---------------
------S---------S-----------------------SS---------------S----------------------
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-----------------------------------S--------------------------------------SSSS--
------------------S------------------S---------S--------------------------------
-S---------------------S-S-----S-------S-------------------------------S--------
-------S---------S----------------------------------------S---------------------
------S-----------------------S-------S-----------------------------------------
-------------------S------------------------------------------------------------
----------S-------------------S-------------------S-----------------------------
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------------------------------S-------------------------------------------------
-------------S------------------------------------------------------------------
------------S--------S---------------------------S------------------------------
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-------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------
S-----------------------------------------------------------------S---------S---
------------SS------------S----------------------------------------S------------
------------------------------------------------S---------SS--------------------
----S-SS--------------------------------------SSS-------------------------------
---------SS----S----------S----------------------S------------------------------
------SS--------S---------S----S-------------------S----------------------------
-----------------S--------S-----------S--SSSS---------S-S-------S---------------
--------------S------------------------------SS--------S----------S-------------
-SSSSSSSSSSSSSS-----------------------------S-S-----------S------S--------------
-------S-------------S-S----------S-----------------------S-----------S------S--
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>forward_282
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----------------------TCGAAGGATATGTGTGGCGG--------------------------------------
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>reverse_4050
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-------------------------------------------------GTGGTGCTGCAATGGTCTAC-----------
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