Multiple sequence alignment - TraesCS5B01G079600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G079600 chr5B 100.000 3248 0 0 1 3248 96883211 96886458 0.000000e+00 5999.0
1 TraesCS5B01G079600 chr5D 94.919 2854 108 21 1 2835 91612081 91614916 0.000000e+00 4433.0
2 TraesCS5B01G079600 chr5D 92.199 1128 60 11 374 1489 91839145 91840256 0.000000e+00 1570.0
3 TraesCS5B01G079600 chr5D 94.398 964 43 9 1910 2864 91630399 91631360 0.000000e+00 1471.0
4 TraesCS5B01G079600 chr5D 95.125 882 41 2 1585 2466 91840256 91841135 0.000000e+00 1389.0
5 TraesCS5B01G079600 chr5D 91.169 419 27 8 2451 2863 91848758 91849172 7.870000e-156 560.0
6 TraesCS5B01G079600 chr5D 91.414 198 9 3 2947 3138 91615067 91615262 6.910000e-67 265.0
7 TraesCS5B01G079600 chr5D 84.000 225 26 6 2982 3203 91849458 91849675 1.180000e-49 207.0
8 TraesCS5B01G079600 chr5D 99.000 100 1 0 1816 1915 91630145 91630244 2.570000e-41 180.0
9 TraesCS5B01G079600 chr5A 95.211 2318 87 15 561 2863 85261645 85263953 0.000000e+00 3644.0
10 TraesCS5B01G079600 chr5A 90.881 965 67 15 1910 2864 85290595 85291548 0.000000e+00 1275.0
11 TraesCS5B01G079600 chr5A 87.828 534 36 11 1 523 85261055 85261570 1.670000e-167 599.0
12 TraesCS5B01G079600 chr5A 87.037 324 21 13 2918 3221 85291630 85291952 2.400000e-91 346.0
13 TraesCS5B01G079600 chr5A 96.190 105 4 0 1818 1922 85289136 85289240 4.310000e-39 172.0
14 TraesCS5B01G079600 chr5A 94.186 86 4 1 3156 3240 85297362 85297447 2.630000e-26 130.0
15 TraesCS5B01G079600 chr7B 96.154 52 2 0 3197 3248 611239618 611239567 5.770000e-13 86.1
16 TraesCS5B01G079600 chr7D 96.078 51 2 0 3195 3245 509926301 509926351 2.080000e-12 84.2
17 TraesCS5B01G079600 chr7D 94.231 52 2 1 3197 3248 90975343 90975293 9.660000e-11 78.7
18 TraesCS5B01G079600 chr6A 96.078 51 2 0 3198 3248 27786390 27786340 2.080000e-12 84.2
19 TraesCS5B01G079600 chr3D 97.872 47 1 0 3201 3247 9551971 9551925 7.470000e-12 82.4
20 TraesCS5B01G079600 chr3A 96.000 50 2 0 3196 3245 512309568 512309617 7.470000e-12 82.4
21 TraesCS5B01G079600 chr2B 96.000 50 1 1 3196 3245 161935414 161935462 2.690000e-11 80.5
22 TraesCS5B01G079600 chr6D 94.231 52 1 2 3197 3247 57999641 57999691 9.660000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G079600 chr5B 96883211 96886458 3247 False 5999.000000 5999 100.000000 1 3248 1 chr5B.!!$F1 3247
1 TraesCS5B01G079600 chr5D 91612081 91615262 3181 False 2349.000000 4433 93.166500 1 3138 2 chr5D.!!$F1 3137
2 TraesCS5B01G079600 chr5D 91839145 91841135 1990 False 1479.500000 1570 93.662000 374 2466 2 chr5D.!!$F3 2092
3 TraesCS5B01G079600 chr5D 91630145 91631360 1215 False 825.500000 1471 96.699000 1816 2864 2 chr5D.!!$F2 1048
4 TraesCS5B01G079600 chr5D 91848758 91849675 917 False 383.500000 560 87.584500 2451 3203 2 chr5D.!!$F4 752
5 TraesCS5B01G079600 chr5A 85261055 85263953 2898 False 2121.500000 3644 91.519500 1 2863 2 chr5A.!!$F2 2862
6 TraesCS5B01G079600 chr5A 85289136 85291952 2816 False 597.666667 1275 91.369333 1818 3221 3 chr5A.!!$F3 1403

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
690 748 0.037160 TCGCCCCACTAAAACCTTCC 59.963 55.000 0.0 0.0 0.0 3.46 F
832 894 1.204704 CTCATGCTTCGGTAGTGGTGA 59.795 52.381 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1974 3406 1.116536 TACACCGGTGCCTCTTGACA 61.117 55.0 34.26 5.5 0.00 3.58 R
2713 4153 0.106967 TGCCATAAGCCCATAACGCA 60.107 50.0 0.00 0.0 42.71 5.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 1.301716 GTTCCCGAGCTCAGTTGCA 60.302 57.895 15.40 0.00 34.99 4.08
93 94 2.932614 CGCTTACTGGTTCTGGATTGAG 59.067 50.000 0.00 0.00 0.00 3.02
95 96 3.869912 GCTTACTGGTTCTGGATTGAGCA 60.870 47.826 0.00 0.00 0.00 4.26
119 120 4.379243 CTGGTTCCCGAGCGCTGT 62.379 66.667 18.48 0.00 0.00 4.40
140 141 3.304911 TCTCTCCGATTCCTCACTGAT 57.695 47.619 0.00 0.00 0.00 2.90
166 167 2.489971 TCGAATTGCGTCTCTGGTTTT 58.510 42.857 0.00 0.00 41.80 2.43
168 169 2.319472 GAATTGCGTCTCTGGTTTTGC 58.681 47.619 0.00 0.00 0.00 3.68
177 178 1.613437 CTCTGGTTTTGCAATTCGGGT 59.387 47.619 0.00 0.00 0.00 5.28
187 188 1.883926 GCAATTCGGGTGGTTTAGTGT 59.116 47.619 0.00 0.00 0.00 3.55
294 295 1.450531 GCATTCCCTGAGCAATCCGG 61.451 60.000 0.00 0.00 0.00 5.14
301 302 3.202706 GAGCAATCCGGAACCGCC 61.203 66.667 9.01 2.21 38.24 6.13
376 377 2.826674 AATCCCATTCCATTCCACGT 57.173 45.000 0.00 0.00 0.00 4.49
403 415 0.971386 ACGCCTTCTTCCGTTTCCTA 59.029 50.000 0.00 0.00 33.26 2.94
485 503 2.932614 GTGAGCTGAGCGTATCATTGTT 59.067 45.455 0.00 0.00 37.28 2.83
486 504 3.000724 GTGAGCTGAGCGTATCATTGTTC 59.999 47.826 0.00 0.00 37.28 3.18
487 505 2.196749 AGCTGAGCGTATCATTGTTCG 58.803 47.619 0.00 0.00 37.28 3.95
488 506 1.927174 GCTGAGCGTATCATTGTTCGT 59.073 47.619 0.00 0.00 37.28 3.85
494 512 2.534939 GCGTATCATTGTTCGTGTGCTC 60.535 50.000 0.00 0.00 0.00 4.26
507 525 1.468520 GTGTGCTCAATGTGGCGTATT 59.531 47.619 0.00 0.00 0.00 1.89
508 526 1.468127 TGTGCTCAATGTGGCGTATTG 59.532 47.619 7.07 7.07 36.98 1.90
559 605 2.806945 AAACCCCGTGATGATGTGAT 57.193 45.000 0.00 0.00 0.00 3.06
570 626 4.619760 GTGATGATGTGATTGTTGTTGCAG 59.380 41.667 0.00 0.00 0.00 4.41
618 675 5.491070 TGTCTTCCCTCAAACTATCACATG 58.509 41.667 0.00 0.00 0.00 3.21
644 702 3.438360 CTGGTTGTTTCACAGTGCTTTC 58.562 45.455 0.00 0.00 0.00 2.62
688 746 2.368311 TTTCGCCCCACTAAAACCTT 57.632 45.000 0.00 0.00 0.00 3.50
690 748 0.037160 TCGCCCCACTAAAACCTTCC 59.963 55.000 0.00 0.00 0.00 3.46
753 811 4.937620 GGCTGTAGATTGTGATTCAACTCA 59.062 41.667 0.00 0.00 38.97 3.41
832 894 1.204704 CTCATGCTTCGGTAGTGGTGA 59.795 52.381 0.00 0.00 0.00 4.02
920 985 4.144297 TGTTCTAATGCACTTTGCCTTCT 58.856 39.130 0.00 0.00 44.23 2.85
972 1037 8.153550 AGTGAGTTAATGTTCAGTTCATCTCTT 58.846 33.333 0.00 0.00 0.00 2.85
1417 1482 1.846124 AAGCGGTCAAAGAGGGGGA 60.846 57.895 0.00 0.00 0.00 4.81
1750 1815 2.094854 GCTTGTGAGGATTGCTTTGGAG 60.095 50.000 0.00 0.00 0.00 3.86
1974 3406 4.806330 CTGATTTTTCAGCTGCAGTGAAT 58.194 39.130 23.33 14.08 33.95 2.57
1988 3420 0.798776 GTGAATGTCAAGAGGCACCG 59.201 55.000 0.00 0.00 0.00 4.94
2178 3610 1.213013 CCGACTTCCAGGTCTCACG 59.787 63.158 0.00 0.00 34.38 4.35
2273 3705 2.094659 CCGATGCACACAGTCGTCC 61.095 63.158 5.97 0.00 33.77 4.79
2296 3728 3.651803 ACTGCTACAGTCACTTCACTC 57.348 47.619 0.00 0.00 41.21 3.51
2329 3761 4.156556 GTCAATCAGCCTGATAGCAAAACA 59.843 41.667 7.81 0.00 35.76 2.83
2341 3773 7.230849 TGATAGCAAAACATCCAATTTGTCT 57.769 32.000 0.00 0.00 38.48 3.41
2371 3803 1.027357 AGTCACAAGCTTTGCACTGG 58.973 50.000 0.00 0.00 0.00 4.00
2409 3843 4.262420 GGCAAATTTTCCTGGCAGTAAAGA 60.262 41.667 14.43 0.00 37.99 2.52
2548 3982 1.859080 GCCGTATACTTTCTCCTTGCG 59.141 52.381 0.56 0.00 0.00 4.85
2680 4120 6.757897 TTGGATGTGGTAGCAAGAAATAAG 57.242 37.500 0.00 0.00 0.00 1.73
2715 4155 2.863153 GTCACTGTCGTGGCATGC 59.137 61.111 9.90 9.90 45.01 4.06
2716 4156 2.738139 TCACTGTCGTGGCATGCG 60.738 61.111 12.44 0.00 41.53 4.73
2717 4157 3.043713 CACTGTCGTGGCATGCGT 61.044 61.111 12.44 0.00 37.50 5.24
2718 4158 2.280797 ACTGTCGTGGCATGCGTT 60.281 55.556 12.44 0.00 0.00 4.84
2723 4163 1.817520 TCGTGGCATGCGTTATGGG 60.818 57.895 12.44 0.00 37.26 4.00
2724 4164 2.412937 GTGGCATGCGTTATGGGC 59.587 61.111 12.44 0.00 37.26 5.36
2771 4221 2.886523 CTGGTTTCTTGTGAATGAGGCA 59.113 45.455 0.00 0.00 31.56 4.75
2831 4284 4.521912 CAGTTGTCTGTGCAAAGTTTGCC 61.522 47.826 32.06 24.05 43.07 4.52
2864 4333 2.878406 TGGTTTGCTGCAGTTTCTCTAC 59.122 45.455 16.64 4.39 0.00 2.59
2866 4335 2.878406 GTTTGCTGCAGTTTCTCTACCA 59.122 45.455 16.64 0.00 0.00 3.25
2867 4336 2.928801 TGCTGCAGTTTCTCTACCAA 57.071 45.000 16.64 0.00 0.00 3.67
2868 4337 2.771089 TGCTGCAGTTTCTCTACCAAG 58.229 47.619 16.64 0.00 0.00 3.61
2869 4338 2.368548 TGCTGCAGTTTCTCTACCAAGA 59.631 45.455 16.64 0.00 0.00 3.02
2895 4402 1.725641 CTGATGGTAAGTGCAGCGAA 58.274 50.000 0.00 0.00 0.00 4.70
2896 4403 2.076100 CTGATGGTAAGTGCAGCGAAA 58.924 47.619 0.00 0.00 0.00 3.46
2897 4404 2.483877 CTGATGGTAAGTGCAGCGAAAA 59.516 45.455 0.00 0.00 0.00 2.29
2898 4405 2.881513 TGATGGTAAGTGCAGCGAAAAA 59.118 40.909 0.00 0.00 0.00 1.94
2942 4449 1.160137 GTTCAGGTCATGGACTGCAC 58.840 55.000 11.30 8.15 34.18 4.57
2943 4455 0.764271 TTCAGGTCATGGACTGCACA 59.236 50.000 11.30 0.00 32.47 4.57
2975 4488 2.303022 TCTGATGTTCCAGTTCCCAGAC 59.697 50.000 0.00 0.00 35.71 3.51
2980 4631 1.056660 TTCCAGTTCCCAGACAGACC 58.943 55.000 0.00 0.00 0.00 3.85
3043 4694 2.029200 TGGATTTTGTCAATGCGCACAT 60.029 40.909 14.90 0.54 38.49 3.21
3110 4774 7.607223 TGATTTGGGATCCATTTCATGTTTTTC 59.393 33.333 15.23 0.00 31.53 2.29
3114 4778 6.101997 GGGATCCATTTCATGTTTTTCTGAC 58.898 40.000 15.23 0.00 0.00 3.51
3162 4827 2.114616 AGCCAACACAACCAAAATCCA 58.885 42.857 0.00 0.00 0.00 3.41
3171 4836 9.319143 CAACACAACCAAAATCCAAACTAATTA 57.681 29.630 0.00 0.00 0.00 1.40
3191 4856 2.440409 ACAATTGCAAGGGCTAGACAG 58.560 47.619 4.94 0.00 41.91 3.51
3226 4891 7.462590 ACTCCCTCCATTTCTAAATATAAGCC 58.537 38.462 0.00 0.00 0.00 4.35
3227 4892 7.295911 ACTCCCTCCATTTCTAAATATAAGCCT 59.704 37.037 0.00 0.00 0.00 4.58
3228 4893 8.057246 TCCCTCCATTTCTAAATATAAGCCTT 57.943 34.615 0.00 0.00 0.00 4.35
3229 4894 8.511126 TCCCTCCATTTCTAAATATAAGCCTTT 58.489 33.333 0.00 0.00 0.00 3.11
3230 4895 8.797438 CCCTCCATTTCTAAATATAAGCCTTTC 58.203 37.037 0.00 0.00 0.00 2.62
3231 4896 9.579932 CCTCCATTTCTAAATATAAGCCTTTCT 57.420 33.333 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 3.197766 TCAATCCAGAACCAGTAAGCGAT 59.802 43.478 0.00 0.00 0.00 4.58
106 107 2.214181 GAGAGAACAGCGCTCGGGAA 62.214 60.000 7.13 0.00 37.46 3.97
108 109 2.202676 GAGAGAACAGCGCTCGGG 60.203 66.667 7.13 0.00 37.46 5.14
109 110 2.202676 GGAGAGAACAGCGCTCGG 60.203 66.667 7.13 0.00 43.50 4.63
113 114 1.148759 GGAATCGGAGAGAACAGCGC 61.149 60.000 0.00 0.00 43.63 5.92
114 115 0.457851 AGGAATCGGAGAGAACAGCG 59.542 55.000 0.00 0.00 43.63 5.18
115 116 1.478510 TGAGGAATCGGAGAGAACAGC 59.521 52.381 0.00 0.00 43.63 4.40
116 117 2.757868 AGTGAGGAATCGGAGAGAACAG 59.242 50.000 0.00 0.00 43.63 3.16
117 118 2.493675 CAGTGAGGAATCGGAGAGAACA 59.506 50.000 0.00 0.00 43.63 3.18
118 119 2.755655 TCAGTGAGGAATCGGAGAGAAC 59.244 50.000 0.00 0.00 43.63 3.01
119 120 3.087370 TCAGTGAGGAATCGGAGAGAA 57.913 47.619 0.00 0.00 43.63 2.87
140 141 3.125146 CCAGAGACGCAATTCGATCAAAA 59.875 43.478 0.00 0.00 41.67 2.44
166 167 1.883275 CACTAAACCACCCGAATTGCA 59.117 47.619 0.00 0.00 0.00 4.08
168 169 4.295051 CAAACACTAAACCACCCGAATTG 58.705 43.478 0.00 0.00 0.00 2.32
177 178 2.173782 TCCAGGAGCAAACACTAAACCA 59.826 45.455 0.00 0.00 0.00 3.67
187 188 4.191544 CAGACGATTAATCCAGGAGCAAA 58.808 43.478 9.87 0.00 0.00 3.68
237 238 2.159599 GCTGAAACGAGATTGCAGGAAG 60.160 50.000 0.00 0.00 0.00 3.46
301 302 3.775654 GTGTGAGAGGAGGGCGGG 61.776 72.222 0.00 0.00 0.00 6.13
317 318 1.111116 TTCCTGTCTCGTGAACCCGT 61.111 55.000 0.00 0.00 0.00 5.28
376 377 2.232941 ACGGAAGAAGGCGTCAGAAATA 59.767 45.455 2.69 0.00 0.00 1.40
403 415 2.618241 ACGGCATTTGATCACGCATTAT 59.382 40.909 11.79 0.00 0.00 1.28
485 503 2.316867 CGCCACATTGAGCACACGA 61.317 57.895 0.00 0.00 0.00 4.35
486 504 1.288419 TACGCCACATTGAGCACACG 61.288 55.000 0.00 0.00 0.00 4.49
487 505 1.086696 ATACGCCACATTGAGCACAC 58.913 50.000 0.00 0.00 0.00 3.82
488 506 1.468127 CAATACGCCACATTGAGCACA 59.532 47.619 0.00 0.00 35.77 4.57
494 512 1.199789 ACACAGCAATACGCCACATTG 59.800 47.619 0.00 0.00 44.04 2.82
507 525 2.494059 GAAGCAACTAAGGACACAGCA 58.506 47.619 0.00 0.00 0.00 4.41
508 526 1.461127 CGAAGCAACTAAGGACACAGC 59.539 52.381 0.00 0.00 0.00 4.40
559 605 3.188492 CAATGACAAGCTGCAACAACAA 58.812 40.909 1.02 0.00 0.00 2.83
570 626 2.505557 GCGCCAGCAATGACAAGC 60.506 61.111 0.00 0.00 44.35 4.01
672 730 0.037734 AGGAAGGTTTTAGTGGGGCG 59.962 55.000 0.00 0.00 0.00 6.13
688 746 6.003326 TGACAGATTAATCAAAAGCACAGGA 58.997 36.000 17.56 0.00 0.00 3.86
690 748 6.320171 CCTGACAGATTAATCAAAAGCACAG 58.680 40.000 17.56 13.95 0.00 3.66
856 918 8.817100 CGACATAAACTATTGCATCTAACTGAA 58.183 33.333 0.00 0.00 0.00 3.02
895 957 5.232463 AAGGCAAAGTGCATTAGAACATTG 58.768 37.500 0.00 0.00 46.19 2.82
972 1037 4.960938 AGATGCACTAAGTCAGAACACAA 58.039 39.130 0.00 0.00 0.00 3.33
1417 1482 4.787551 TCATTAAACTTGAGTGGTGGTGT 58.212 39.130 0.00 0.00 0.00 4.16
1548 1613 3.863142 GCATTCAGCTTCACATCCTTT 57.137 42.857 0.00 0.00 41.15 3.11
1750 1815 1.736681 GCTGCTGTCCTTCTCACATTC 59.263 52.381 0.00 0.00 0.00 2.67
1974 3406 1.116536 TACACCGGTGCCTCTTGACA 61.117 55.000 34.26 5.50 0.00 3.58
1988 3420 1.271926 ACTTCCCACAGGCATTACACC 60.272 52.381 0.00 0.00 0.00 4.16
2075 3507 1.376609 GCTTTCGGCGAACCCATGAT 61.377 55.000 23.64 0.00 0.00 2.45
2178 3610 2.872858 GCCCGAGAAAATAGTGATGTCC 59.127 50.000 0.00 0.00 0.00 4.02
2273 3705 2.726760 GTGAAGTGACTGTAGCAGTTCG 59.273 50.000 3.16 0.00 45.44 3.95
2296 3728 5.664457 TCAGGCTGATTGACTATACACAAG 58.336 41.667 14.43 0.00 28.96 3.16
2341 3773 8.572185 TGCAAAGCTTGTGACTATTTACAAATA 58.428 29.630 0.00 0.00 36.47 1.40
2371 3803 2.467566 TTGCCGGTAAAGAGAAGGAC 57.532 50.000 1.06 0.00 0.00 3.85
2409 3843 3.019564 GCAACTGCATAAGATCCTTGGT 58.980 45.455 0.00 0.00 41.59 3.67
2489 3923 7.601886 CCAGATCATTAGTTAGTGCTAGAATGG 59.398 40.741 0.00 0.00 0.00 3.16
2680 4120 5.063186 CAGTGACAATCAGAGCAGTGATTAC 59.937 44.000 11.90 8.18 43.85 1.89
2713 4153 0.106967 TGCCATAAGCCCATAACGCA 60.107 50.000 0.00 0.00 42.71 5.24
2714 4154 1.247567 ATGCCATAAGCCCATAACGC 58.752 50.000 0.00 0.00 42.71 4.84
2715 4155 2.030007 CCAATGCCATAAGCCCATAACG 60.030 50.000 0.00 0.00 42.71 3.18
2716 4156 2.965147 ACCAATGCCATAAGCCCATAAC 59.035 45.455 0.00 0.00 42.71 1.89
2717 4157 3.326946 ACCAATGCCATAAGCCCATAA 57.673 42.857 0.00 0.00 42.71 1.90
2718 4158 3.326946 AACCAATGCCATAAGCCCATA 57.673 42.857 0.00 0.00 42.71 2.74
2723 4163 4.064388 ACACAAAAACCAATGCCATAAGC 58.936 39.130 0.00 0.00 44.14 3.09
2724 4164 5.757320 TGAACACAAAAACCAATGCCATAAG 59.243 36.000 0.00 0.00 0.00 1.73
2771 4221 2.130193 TCCAGGGAGCATAGCAGAATT 58.870 47.619 0.00 0.00 0.00 2.17
2831 4284 3.645884 CAGCAAACCACATCAAGGAAAG 58.354 45.455 0.00 0.00 0.00 2.62
2864 4333 0.322277 ACCATCAGCTGCACTCTTGG 60.322 55.000 9.47 10.83 34.77 3.61
2866 4335 2.304180 ACTTACCATCAGCTGCACTCTT 59.696 45.455 9.47 0.00 0.00 2.85
2867 4336 1.905215 ACTTACCATCAGCTGCACTCT 59.095 47.619 9.47 0.00 0.00 3.24
2868 4337 2.005451 CACTTACCATCAGCTGCACTC 58.995 52.381 9.47 0.00 0.00 3.51
2869 4338 1.947678 GCACTTACCATCAGCTGCACT 60.948 52.381 9.47 0.00 0.00 4.40
2915 4422 4.901250 AGTCCATGACCTGAACCAATTTTT 59.099 37.500 0.00 0.00 32.18 1.94
2916 4423 4.281688 CAGTCCATGACCTGAACCAATTTT 59.718 41.667 0.00 0.00 32.18 1.82
2919 4426 2.881403 GCAGTCCATGACCTGAACCAAT 60.881 50.000 13.74 0.00 32.18 3.16
2942 4449 3.064958 GGAACATCAGACATGCATCACTG 59.935 47.826 18.21 18.21 0.00 3.66
2943 4455 3.276857 GGAACATCAGACATGCATCACT 58.723 45.455 0.00 0.00 0.00 3.41
3047 4698 2.869897 CTCTACACTCTTGCGAAGGAC 58.130 52.381 0.00 0.00 0.00 3.85
3110 4774 2.221055 GCTTAACACACTGGAACGTCAG 59.779 50.000 2.88 2.88 40.40 3.51
3114 4778 5.382303 CATTAAGCTTAACACACTGGAACG 58.618 41.667 20.85 0.00 0.00 3.95
3162 4827 6.358974 AGCCCTTGCAATTGTAATTAGTTT 57.641 33.333 9.51 0.00 41.13 2.66
3171 4836 2.224867 ACTGTCTAGCCCTTGCAATTGT 60.225 45.455 7.40 0.00 41.13 2.71
3191 4856 5.308237 AGAAATGGAGGGAGTATATGTGGAC 59.692 44.000 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.