Multiple sequence alignment - TraesCS5B01G070400

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G070400 chr5B 100.000 2822 0 0 1 2822 81395816 81398637 0.000000e+00 5212.0
1 TraesCS5B01G070400 chr5D 95.377 2163 61 22 1 2136 72548999 72546849 0.000000e+00 3404.0
2 TraesCS5B01G070400 chr5D 84.146 410 37 10 2150 2533 72545489 72545082 3.430000e-99 372.0
3 TraesCS5B01G070400 chr5A 89.861 2446 142 50 1 2406 64983245 64980866 0.000000e+00 3046.0
4 TraesCS5B01G070400 chr5A 91.912 136 9 2 2538 2671 590401415 590401280 3.710000e-44 189.0
5 TraesCS5B01G070400 chr5A 92.188 128 9 1 2408 2534 64965248 64965121 2.230000e-41 180.0
6 TraesCS5B01G070400 chr5A 100.000 60 0 0 793 852 7540191 7540132 8.260000e-21 111.0
7 TraesCS5B01G070400 chr5A 81.579 114 14 3 2286 2399 652662163 652662057 1.390000e-13 87.9
8 TraesCS5B01G070400 chr2D 92.069 290 17 5 2538 2822 84785171 84785459 1.220000e-108 403.0
9 TraesCS5B01G070400 chr2D 90.517 232 21 1 347 577 437713879 437713648 3.530000e-79 305.0
10 TraesCS5B01G070400 chr2D 100.000 60 0 0 793 852 437713613 437713554 8.260000e-21 111.0
11 TraesCS5B01G070400 chr1B 91.246 297 23 3 2529 2822 7704495 7704199 4.380000e-108 401.0
12 TraesCS5B01G070400 chr1B 91.259 286 23 2 2538 2822 622079102 622079386 3.410000e-104 388.0
13 TraesCS5B01G070400 chr6D 91.579 285 23 1 2538 2821 444501080 444501364 2.640000e-105 392.0
14 TraesCS5B01G070400 chr6D 94.074 135 7 1 2538 2671 444505786 444505920 1.330000e-48 204.0
15 TraesCS5B01G070400 chr6D 79.452 146 27 3 2263 2406 386187661 386187517 1.790000e-17 100.0
16 TraesCS5B01G070400 chr4D 90.941 287 24 2 2538 2822 507075943 507075657 4.410000e-103 385.0
17 TraesCS5B01G070400 chr2B 88.660 291 24 7 2538 2822 652599751 652599464 2.080000e-91 346.0
18 TraesCS5B01G070400 chr3D 90.686 204 19 0 230 433 135129841 135130044 3.580000e-69 272.0
19 TraesCS5B01G070400 chr3D 90.066 151 15 0 227 377 135142979 135143129 2.220000e-46 196.0
20 TraesCS5B01G070400 chr3D 83.333 132 12 3 2277 2406 454758456 454758333 2.300000e-21 113.0
21 TraesCS5B01G070400 chr3D 81.429 140 21 4 2263 2399 590082263 590082126 2.970000e-20 110.0
22 TraesCS5B01G070400 chr3B 90.338 207 20 0 227 433 191252398 191252604 3.580000e-69 272.0
23 TraesCS5B01G070400 chr3B 97.468 79 2 0 774 852 273555002 273554924 4.900000e-28 135.0
24 TraesCS5B01G070400 chr3A 85.446 213 20 2 227 433 150065984 150066191 7.920000e-51 211.0
25 TraesCS5B01G070400 chr1A 92.647 136 8 2 2538 2671 403612113 403611978 7.980000e-46 195.0
26 TraesCS5B01G070400 chr1A 100.000 60 0 0 793 852 465688302 465688243 8.260000e-21 111.0
27 TraesCS5B01G070400 chr7B 97.468 79 2 0 774 852 441433814 441433892 4.900000e-28 135.0
28 TraesCS5B01G070400 chr7B 81.746 126 19 3 2283 2406 12961469 12961346 4.970000e-18 102.0
29 TraesCS5B01G070400 chr1D 86.885 122 15 1 2286 2406 493716952 493717073 4.900000e-28 135.0
30 TraesCS5B01G070400 chr7D 85.366 123 14 4 2286 2406 234137254 234137374 1.060000e-24 124.0
31 TraesCS5B01G070400 chr6A 98.333 60 1 0 793 852 209657736 209657795 3.840000e-19 106.0
32 TraesCS5B01G070400 chr6A 98.333 60 1 0 793 852 428843996 428843937 3.840000e-19 106.0
33 TraesCS5B01G070400 chr6A 81.081 111 13 4 2286 2395 445561819 445561716 6.480000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G070400 chr5B 81395816 81398637 2821 False 5212 5212 100.0000 1 2822 1 chr5B.!!$F1 2821
1 TraesCS5B01G070400 chr5D 72545082 72548999 3917 True 1888 3404 89.7615 1 2533 2 chr5D.!!$R1 2532
2 TraesCS5B01G070400 chr5A 64980866 64983245 2379 True 3046 3046 89.8610 1 2406 1 chr5A.!!$R3 2405

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
425 432 0.033504 GTCTGACGCTGGAGGAACAA 59.966 55.0 0.0 0.0 0.0 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2241 3646 0.24636 TGCTACCGATCGGCCATATG 59.754 55.0 33.62 17.17 39.32 1.78 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 0.518636 CCACTTCAGTGTTGATGGCG 59.481 55.000 6.22 0.00 44.21 5.69
115 121 2.293677 ACACAGAAGAACGTGACGATCT 59.706 45.455 13.70 12.79 40.50 2.75
174 180 0.548031 CAGCCCTAATTCCTGCCTGA 59.452 55.000 0.00 0.00 0.00 3.86
175 181 1.064463 CAGCCCTAATTCCTGCCTGAA 60.064 52.381 0.00 0.00 0.00 3.02
177 183 3.056080 AGCCCTAATTCCTGCCTGAATA 58.944 45.455 0.00 0.00 33.91 1.75
204 211 2.572095 TATTCGACCTGCAGCACCCG 62.572 60.000 8.66 8.46 0.00 5.28
230 237 4.099266 TGCTGGCTGATAACAACAGTTTTT 59.901 37.500 0.00 0.00 37.64 1.94
316 323 5.722172 TCCTCATCATGAAGGGAAGAATT 57.278 39.130 12.58 0.00 0.00 2.17
379 386 3.627577 TCTGAACTTGTTGAAAGCAGGAC 59.372 43.478 0.00 0.00 0.00 3.85
425 432 0.033504 GTCTGACGCTGGAGGAACAA 59.966 55.000 0.00 0.00 0.00 2.83
435 442 0.244721 GGAGGAACAAATGCCTGCAC 59.755 55.000 0.00 0.00 41.69 4.57
481 490 3.570125 TGTTTTGTCAGTCACACAAACCA 59.430 39.130 0.00 0.00 42.17 3.67
482 491 4.038042 TGTTTTGTCAGTCACACAAACCAA 59.962 37.500 0.00 0.00 42.17 3.67
483 492 3.840890 TTGTCAGTCACACAAACCAAC 57.159 42.857 0.00 0.00 33.41 3.77
515 527 2.768527 TGGGAAAAATGTGGTTGCAGAA 59.231 40.909 0.00 0.00 0.00 3.02
517 529 3.392882 GGAAAAATGTGGTTGCAGAAGG 58.607 45.455 0.00 0.00 0.00 3.46
554 566 7.390440 TCGAAATGTTTAGCCATATATTCCTGG 59.610 37.037 0.00 0.00 35.53 4.45
706 726 2.933056 GCGCAGAGGCTAGGGATATTTC 60.933 54.545 0.30 0.00 38.10 2.17
726 746 4.788925 TCTCCCCTTTTCAGAGACAAAA 57.211 40.909 0.00 0.00 31.80 2.44
854 874 3.981071 ATTCCTCGACAACCTTCATCA 57.019 42.857 0.00 0.00 0.00 3.07
855 875 3.319137 TTCCTCGACAACCTTCATCAG 57.681 47.619 0.00 0.00 0.00 2.90
861 881 3.005554 CGACAACCTTCATCAGCAAGAT 58.994 45.455 0.00 0.00 37.48 2.40
891 915 1.859302 AAACCAAGCCAACCAACTCA 58.141 45.000 0.00 0.00 0.00 3.41
893 917 2.086610 ACCAAGCCAACCAACTCAAT 57.913 45.000 0.00 0.00 0.00 2.57
897 921 1.620822 AGCCAACCAACTCAATGGAC 58.379 50.000 0.00 0.00 43.54 4.02
949 993 3.439857 AATCTTCCTTGCTGCCAACTA 57.560 42.857 0.00 0.00 0.00 2.24
1509 1553 1.139947 GAGCTACAGCCTCCACGTC 59.860 63.158 0.00 0.00 43.38 4.34
1722 1766 2.111878 AAGGTGAAGCGCTGCTGT 59.888 55.556 18.27 0.00 39.62 4.40
1920 1967 2.509111 CTACGTGGCGCTGCATGA 60.509 61.111 7.64 0.00 0.00 3.07
1977 2025 0.468585 TCCCCACGTGTCAGTGTAGT 60.469 55.000 15.65 0.00 40.33 2.73
2095 2148 3.706373 AGCGTTGGTGAGGCCGAT 61.706 61.111 0.00 0.00 39.95 4.18
2111 2170 0.464036 CGATGGTCCAATCTTCCCGA 59.536 55.000 0.00 0.00 0.00 5.14
2117 2176 2.584608 CAATCTTCCCGACCGCCT 59.415 61.111 0.00 0.00 0.00 5.52
2138 2197 4.530857 CGGCCACGGATGAGTCCC 62.531 72.222 2.24 0.00 41.83 4.46
2140 2199 1.760875 GGCCACGGATGAGTCCCTA 60.761 63.158 0.00 0.00 41.83 3.53
2181 3586 3.476552 AGAAGCGAACTTGACAAATCCA 58.523 40.909 0.00 0.00 35.82 3.41
2192 3597 4.846779 TGACAAATCCAGCACCTTTAAC 57.153 40.909 0.00 0.00 0.00 2.01
2198 3603 5.366829 AATCCAGCACCTTTAACGTTTAC 57.633 39.130 5.91 0.00 0.00 2.01
2199 3604 4.075963 TCCAGCACCTTTAACGTTTACT 57.924 40.909 5.91 0.00 0.00 2.24
2201 3606 3.058501 CCAGCACCTTTAACGTTTACTGG 60.059 47.826 5.91 6.31 36.53 4.00
2202 3607 3.058501 CAGCACCTTTAACGTTTACTGGG 60.059 47.826 5.91 5.09 0.00 4.45
2203 3608 2.227149 GCACCTTTAACGTTTACTGGGG 59.773 50.000 5.91 4.73 0.00 4.96
2204 3609 2.227149 CACCTTTAACGTTTACTGGGGC 59.773 50.000 5.91 0.00 0.00 5.80
2205 3610 1.465777 CCTTTAACGTTTACTGGGGCG 59.534 52.381 5.91 0.00 0.00 6.13
2209 3614 0.179051 AACGTTTACTGGGGCGTTGA 60.179 50.000 0.00 0.00 44.32 3.18
2211 3616 0.320073 CGTTTACTGGGGCGTTGAGA 60.320 55.000 0.00 0.00 0.00 3.27
2219 3624 2.338984 GGCGTTGAGAGTGACCGT 59.661 61.111 0.00 0.00 0.00 4.83
2229 3634 2.279918 GTGACCGTGGACAGCGTT 60.280 61.111 0.00 0.00 0.00 4.84
2241 3646 1.216710 CAGCGTTGGGAGGTCTCTC 59.783 63.158 0.00 0.00 39.25 3.20
2296 3702 5.076182 TCTAAACCTTCAAATCCATGCACA 58.924 37.500 0.00 0.00 0.00 4.57
2406 3815 7.999679 TGTCAAAATGAAATTCAAGTCTGAGT 58.000 30.769 0.00 0.00 33.67 3.41
2408 3817 6.919662 TCAAAATGAAATTCAAGTCTGAGTGC 59.080 34.615 0.00 0.00 33.67 4.40
2409 3818 6.645790 AAATGAAATTCAAGTCTGAGTGCT 57.354 33.333 0.00 0.00 33.67 4.40
2410 3819 7.750229 AAATGAAATTCAAGTCTGAGTGCTA 57.250 32.000 0.00 0.00 33.67 3.49
2421 3853 5.265191 AGTCTGAGTGCTAGATAAGGTTGA 58.735 41.667 0.00 0.00 0.00 3.18
2424 3856 6.040391 GTCTGAGTGCTAGATAAGGTTGATCT 59.960 42.308 0.00 0.00 37.43 2.75
2479 3911 7.768582 TGTATTTGATCATCACCTTAACGACAT 59.231 33.333 0.00 0.00 0.00 3.06
2495 3927 9.559958 CTTAACGACATTATGAAGCTTTTTCAT 57.440 29.630 0.00 2.08 41.54 2.57
2539 3971 5.476091 GGATGTCCTCCTATTTACTGGAG 57.524 47.826 0.00 0.00 46.91 3.86
2540 3972 4.902448 GGATGTCCTCCTATTTACTGGAGT 59.098 45.833 8.04 0.00 46.17 3.85
2541 3973 6.075984 GGATGTCCTCCTATTTACTGGAGTA 58.924 44.000 8.04 0.00 46.17 2.59
2542 3974 6.726764 GGATGTCCTCCTATTTACTGGAGTAT 59.273 42.308 8.04 0.85 46.17 2.12
2543 3975 7.894364 GGATGTCCTCCTATTTACTGGAGTATA 59.106 40.741 8.04 0.00 46.17 1.47
2544 3976 9.482175 GATGTCCTCCTATTTACTGGAGTATAT 57.518 37.037 8.04 0.00 46.17 0.86
2545 3977 9.845214 ATGTCCTCCTATTTACTGGAGTATATT 57.155 33.333 8.04 0.00 46.17 1.28
2546 3978 9.310449 TGTCCTCCTATTTACTGGAGTATATTC 57.690 37.037 8.04 0.00 46.17 1.75
2547 3979 8.460428 GTCCTCCTATTTACTGGAGTATATTCG 58.540 40.741 8.04 0.00 46.17 3.34
2548 3980 7.614583 TCCTCCTATTTACTGGAGTATATTCGG 59.385 40.741 8.04 0.00 46.17 4.30
2549 3981 7.166691 TCCTATTTACTGGAGTATATTCGGC 57.833 40.000 0.00 0.00 0.00 5.54
2550 3982 6.952358 TCCTATTTACTGGAGTATATTCGGCT 59.048 38.462 0.00 0.00 0.00 5.52
2551 3983 7.036220 CCTATTTACTGGAGTATATTCGGCTG 58.964 42.308 0.00 0.00 0.00 4.85
2552 3984 4.866508 TTACTGGAGTATATTCGGCTGG 57.133 45.455 0.00 0.00 0.00 4.85
2553 3985 2.679082 ACTGGAGTATATTCGGCTGGT 58.321 47.619 0.00 0.00 0.00 4.00
2554 3986 3.039011 ACTGGAGTATATTCGGCTGGTT 58.961 45.455 0.00 0.00 0.00 3.67
2555 3987 3.069729 ACTGGAGTATATTCGGCTGGTTC 59.930 47.826 0.00 0.00 0.00 3.62
2556 3988 3.035363 TGGAGTATATTCGGCTGGTTCA 58.965 45.455 0.00 0.00 0.00 3.18
2557 3989 3.069586 TGGAGTATATTCGGCTGGTTCAG 59.930 47.826 0.00 0.00 34.12 3.02
2558 3990 3.069729 GGAGTATATTCGGCTGGTTCAGT 59.930 47.826 0.00 0.00 33.43 3.41
2559 3991 4.443034 GGAGTATATTCGGCTGGTTCAGTT 60.443 45.833 0.00 0.00 33.43 3.16
2560 3992 5.099042 AGTATATTCGGCTGGTTCAGTTT 57.901 39.130 0.00 0.00 33.43 2.66
2561 3993 5.497474 AGTATATTCGGCTGGTTCAGTTTT 58.503 37.500 0.00 0.00 33.43 2.43
2562 3994 4.701956 ATATTCGGCTGGTTCAGTTTTG 57.298 40.909 0.00 0.00 33.43 2.44
2563 3995 1.028905 TTCGGCTGGTTCAGTTTTGG 58.971 50.000 0.00 0.00 33.43 3.28
2564 3996 0.106918 TCGGCTGGTTCAGTTTTGGT 60.107 50.000 0.00 0.00 33.43 3.67
2565 3997 1.141254 TCGGCTGGTTCAGTTTTGGTA 59.859 47.619 0.00 0.00 33.43 3.25
2566 3998 1.535462 CGGCTGGTTCAGTTTTGGTAG 59.465 52.381 0.00 0.00 33.43 3.18
2567 3999 2.583143 GGCTGGTTCAGTTTTGGTAGT 58.417 47.619 0.00 0.00 33.43 2.73
2568 4000 2.956333 GGCTGGTTCAGTTTTGGTAGTT 59.044 45.455 0.00 0.00 33.43 2.24
2569 4001 3.383505 GGCTGGTTCAGTTTTGGTAGTTT 59.616 43.478 0.00 0.00 33.43 2.66
2570 4002 4.359706 GCTGGTTCAGTTTTGGTAGTTTG 58.640 43.478 0.00 0.00 33.43 2.93
2571 4003 4.097286 GCTGGTTCAGTTTTGGTAGTTTGA 59.903 41.667 0.00 0.00 33.43 2.69
2572 4004 5.393678 GCTGGTTCAGTTTTGGTAGTTTGAA 60.394 40.000 0.00 0.00 33.43 2.69
2573 4005 6.682861 GCTGGTTCAGTTTTGGTAGTTTGAAT 60.683 38.462 0.00 0.00 33.43 2.57
2574 4006 7.176589 TGGTTCAGTTTTGGTAGTTTGAATT 57.823 32.000 0.00 0.00 0.00 2.17
2575 4007 7.038659 TGGTTCAGTTTTGGTAGTTTGAATTG 58.961 34.615 0.00 0.00 0.00 2.32
2576 4008 7.039270 GGTTCAGTTTTGGTAGTTTGAATTGT 58.961 34.615 0.00 0.00 0.00 2.71
2577 4009 8.192110 GGTTCAGTTTTGGTAGTTTGAATTGTA 58.808 33.333 0.00 0.00 0.00 2.41
2578 4010 9.575783 GTTCAGTTTTGGTAGTTTGAATTGTAA 57.424 29.630 0.00 0.00 0.00 2.41
2580 4012 9.959749 TCAGTTTTGGTAGTTTGAATTGTAATC 57.040 29.630 0.00 0.00 0.00 1.75
2581 4013 9.965824 CAGTTTTGGTAGTTTGAATTGTAATCT 57.034 29.630 0.00 0.00 0.00 2.40
2603 4035 8.644374 ATCTATCACTTCTATACTTGGACTCC 57.356 38.462 0.00 0.00 0.00 3.85
2604 4036 7.583625 TCTATCACTTCTATACTTGGACTCCA 58.416 38.462 0.00 0.00 0.00 3.86
2605 4037 8.059461 TCTATCACTTCTATACTTGGACTCCAA 58.941 37.037 10.23 10.23 41.69 3.53
2631 4063 9.914834 AGACTTTGTATTTATATAAACAGCCCA 57.085 29.630 10.07 1.16 0.00 5.36
2637 4069 9.295825 TGTATTTATATAAACAGCCCATTGAGG 57.704 33.333 10.07 0.00 37.03 3.86
2651 4083 5.563592 CCCATTGAGGCATAGATCAATACA 58.436 41.667 0.00 0.00 42.73 2.29
2652 4084 5.413833 CCCATTGAGGCATAGATCAATACAC 59.586 44.000 0.00 0.00 42.73 2.90
2653 4085 5.999600 CCATTGAGGCATAGATCAATACACA 59.000 40.000 0.00 0.00 42.73 3.72
2654 4086 6.487668 CCATTGAGGCATAGATCAATACACAA 59.512 38.462 0.00 0.00 42.73 3.33
2655 4087 6.925610 TTGAGGCATAGATCAATACACAAC 57.074 37.500 0.00 0.00 30.67 3.32
2656 4088 6.239217 TGAGGCATAGATCAATACACAACT 57.761 37.500 0.00 0.00 0.00 3.16
2657 4089 7.360113 TGAGGCATAGATCAATACACAACTA 57.640 36.000 0.00 0.00 0.00 2.24
2658 4090 7.966812 TGAGGCATAGATCAATACACAACTAT 58.033 34.615 0.00 0.00 0.00 2.12
2659 4091 8.432013 TGAGGCATAGATCAATACACAACTATT 58.568 33.333 0.00 0.00 0.00 1.73
2660 4092 9.929180 GAGGCATAGATCAATACACAACTATTA 57.071 33.333 0.00 0.00 0.00 0.98
2661 4093 9.935241 AGGCATAGATCAATACACAACTATTAG 57.065 33.333 0.00 0.00 0.00 1.73
2662 4094 8.660373 GGCATAGATCAATACACAACTATTAGC 58.340 37.037 0.00 0.00 0.00 3.09
2663 4095 9.208022 GCATAGATCAATACACAACTATTAGCA 57.792 33.333 0.00 0.00 0.00 3.49
2667 4099 9.836864 AGATCAATACACAACTATTAGCAATCA 57.163 29.630 0.00 0.00 0.00 2.57
2670 4102 9.612066 TCAATACACAACTATTAGCAATCATCA 57.388 29.630 0.00 0.00 0.00 3.07
2673 4105 7.268199 ACACAACTATTAGCAATCATCATGG 57.732 36.000 0.00 0.00 0.00 3.66
2674 4106 6.830324 ACACAACTATTAGCAATCATCATGGT 59.170 34.615 0.00 0.00 0.00 3.55
2675 4107 7.992608 ACACAACTATTAGCAATCATCATGGTA 59.007 33.333 0.00 0.00 0.00 3.25
2676 4108 9.006839 CACAACTATTAGCAATCATCATGGTAT 57.993 33.333 0.00 0.00 31.50 2.73
2677 4109 9.224267 ACAACTATTAGCAATCATCATGGTATC 57.776 33.333 0.00 0.00 31.50 2.24
2678 4110 9.223099 CAACTATTAGCAATCATCATGGTATCA 57.777 33.333 0.00 0.00 31.50 2.15
2679 4111 9.445878 AACTATTAGCAATCATCATGGTATCAG 57.554 33.333 0.00 0.00 31.50 2.90
2680 4112 8.819845 ACTATTAGCAATCATCATGGTATCAGA 58.180 33.333 0.00 0.00 31.50 3.27
2681 4113 7.918536 ATTAGCAATCATCATGGTATCAGAC 57.081 36.000 0.00 0.00 31.50 3.51
2682 4114 4.313282 AGCAATCATCATGGTATCAGACG 58.687 43.478 0.00 0.00 0.00 4.18
2683 4115 3.120408 GCAATCATCATGGTATCAGACGC 60.120 47.826 0.00 0.00 0.00 5.19
2684 4116 2.820059 TCATCATGGTATCAGACGCC 57.180 50.000 0.00 0.00 0.00 5.68
2685 4117 2.319844 TCATCATGGTATCAGACGCCT 58.680 47.619 0.00 0.00 0.00 5.52
2686 4118 3.496331 TCATCATGGTATCAGACGCCTA 58.504 45.455 0.00 0.00 0.00 3.93
2687 4119 3.507622 TCATCATGGTATCAGACGCCTAG 59.492 47.826 0.00 0.00 0.00 3.02
2688 4120 2.239400 TCATGGTATCAGACGCCTAGG 58.761 52.381 3.67 3.67 0.00 3.02
2689 4121 1.964223 CATGGTATCAGACGCCTAGGT 59.036 52.381 11.31 0.00 0.00 3.08
2690 4122 2.154567 TGGTATCAGACGCCTAGGTT 57.845 50.000 11.31 0.00 0.00 3.50
2691 4123 2.463752 TGGTATCAGACGCCTAGGTTT 58.536 47.619 11.31 0.00 0.00 3.27
2692 4124 2.429610 TGGTATCAGACGCCTAGGTTTC 59.570 50.000 11.31 7.14 0.00 2.78
2693 4125 2.694109 GGTATCAGACGCCTAGGTTTCT 59.306 50.000 11.31 9.46 0.00 2.52
2694 4126 2.969628 ATCAGACGCCTAGGTTTCTG 57.030 50.000 25.20 25.20 37.43 3.02
2695 4127 0.246635 TCAGACGCCTAGGTTTCTGC 59.753 55.000 25.87 6.62 36.26 4.26
2696 4128 0.741221 CAGACGCCTAGGTTTCTGCC 60.741 60.000 21.84 0.44 29.71 4.85
2697 4129 1.449778 GACGCCTAGGTTTCTGCCC 60.450 63.158 11.31 0.00 0.00 5.36
2698 4130 1.900545 GACGCCTAGGTTTCTGCCCT 61.901 60.000 11.31 0.00 36.04 5.19
2699 4131 1.153349 CGCCTAGGTTTCTGCCCTC 60.153 63.158 11.31 0.00 33.35 4.30
2700 4132 1.153349 GCCTAGGTTTCTGCCCTCG 60.153 63.158 11.31 0.00 33.35 4.63
2701 4133 1.614241 GCCTAGGTTTCTGCCCTCGA 61.614 60.000 11.31 0.00 33.35 4.04
2702 4134 0.175989 CCTAGGTTTCTGCCCTCGAC 59.824 60.000 0.00 0.00 33.35 4.20
2703 4135 0.895530 CTAGGTTTCTGCCCTCGACA 59.104 55.000 0.00 0.00 33.35 4.35
2704 4136 1.482593 CTAGGTTTCTGCCCTCGACAT 59.517 52.381 0.00 0.00 33.35 3.06
2705 4137 0.036010 AGGTTTCTGCCCTCGACATG 60.036 55.000 0.00 0.00 0.00 3.21
2706 4138 1.026718 GGTTTCTGCCCTCGACATGG 61.027 60.000 0.00 0.00 0.00 3.66
2711 4143 2.892425 GCCCTCGACATGGCTTCG 60.892 66.667 0.00 0.00 44.46 3.79
2712 4144 2.892425 CCCTCGACATGGCTTCGC 60.892 66.667 0.00 0.00 36.40 4.70
2724 4156 2.815647 CTTCGCCGCCAACTCCTC 60.816 66.667 0.00 0.00 0.00 3.71
2725 4157 4.388499 TTCGCCGCCAACTCCTCC 62.388 66.667 0.00 0.00 0.00 4.30
2727 4159 4.821589 CGCCGCCAACTCCTCCTC 62.822 72.222 0.00 0.00 0.00 3.71
2728 4160 4.475135 GCCGCCAACTCCTCCTCC 62.475 72.222 0.00 0.00 0.00 4.30
2729 4161 4.148825 CCGCCAACTCCTCCTCCG 62.149 72.222 0.00 0.00 0.00 4.63
2730 4162 4.821589 CGCCAACTCCTCCTCCGC 62.822 72.222 0.00 0.00 0.00 5.54
2731 4163 3.394836 GCCAACTCCTCCTCCGCT 61.395 66.667 0.00 0.00 0.00 5.52
2732 4164 2.581354 CCAACTCCTCCTCCGCTG 59.419 66.667 0.00 0.00 0.00 5.18
2733 4165 2.125350 CAACTCCTCCTCCGCTGC 60.125 66.667 0.00 0.00 0.00 5.25
2734 4166 3.394836 AACTCCTCCTCCGCTGCC 61.395 66.667 0.00 0.00 0.00 4.85
2750 4182 4.883300 CCGCCGCGACGACTCTAC 62.883 72.222 18.64 0.00 34.06 2.59
2751 4183 4.156622 CGCCGCGACGACTCTACA 62.157 66.667 9.96 0.00 34.06 2.74
2752 4184 2.576317 GCCGCGACGACTCTACAC 60.576 66.667 8.23 0.00 0.00 2.90
2753 4185 3.036783 GCCGCGACGACTCTACACT 62.037 63.158 8.23 0.00 0.00 3.55
2754 4186 1.699656 GCCGCGACGACTCTACACTA 61.700 60.000 8.23 0.00 0.00 2.74
2755 4187 0.935898 CCGCGACGACTCTACACTAT 59.064 55.000 8.23 0.00 0.00 2.12
2756 4188 1.070710 CCGCGACGACTCTACACTATC 60.071 57.143 8.23 0.00 0.00 2.08
2757 4189 1.591619 CGCGACGACTCTACACTATCA 59.408 52.381 0.00 0.00 0.00 2.15
2758 4190 2.597040 CGCGACGACTCTACACTATCAC 60.597 54.545 0.00 0.00 0.00 3.06
2759 4191 2.286301 GCGACGACTCTACACTATCACC 60.286 54.545 0.00 0.00 0.00 4.02
2760 4192 2.033917 CGACGACTCTACACTATCACCG 60.034 54.545 0.00 0.00 0.00 4.94
2761 4193 3.193263 GACGACTCTACACTATCACCGA 58.807 50.000 0.00 0.00 0.00 4.69
2762 4194 3.196463 ACGACTCTACACTATCACCGAG 58.804 50.000 0.00 0.00 0.00 4.63
2763 4195 3.196463 CGACTCTACACTATCACCGAGT 58.804 50.000 0.00 0.00 34.71 4.18
2764 4196 3.622163 CGACTCTACACTATCACCGAGTT 59.378 47.826 0.00 0.00 32.41 3.01
2765 4197 4.260294 CGACTCTACACTATCACCGAGTTC 60.260 50.000 0.00 0.00 32.41 3.01
2766 4198 3.946558 ACTCTACACTATCACCGAGTTCC 59.053 47.826 0.00 0.00 0.00 3.62
2767 4199 2.941064 TCTACACTATCACCGAGTTCCG 59.059 50.000 0.00 0.00 38.18 4.30
2768 4200 0.172803 ACACTATCACCGAGTTCCGC 59.827 55.000 0.00 0.00 36.84 5.54
2769 4201 0.866061 CACTATCACCGAGTTCCGCG 60.866 60.000 0.00 0.00 36.84 6.46
2770 4202 1.944676 CTATCACCGAGTTCCGCGC 60.945 63.158 0.00 0.00 36.84 6.86
2771 4203 3.420214 TATCACCGAGTTCCGCGCC 62.420 63.158 0.00 0.00 36.84 6.53
2792 4224 4.925861 GGCGCTGCTCCTCCATCC 62.926 72.222 7.64 0.00 0.00 3.51
2793 4225 3.859414 GCGCTGCTCCTCCATCCT 61.859 66.667 0.00 0.00 0.00 3.24
2794 4226 2.420890 CGCTGCTCCTCCATCCTC 59.579 66.667 0.00 0.00 0.00 3.71
2795 4227 2.132996 CGCTGCTCCTCCATCCTCT 61.133 63.158 0.00 0.00 0.00 3.69
2796 4228 1.684386 CGCTGCTCCTCCATCCTCTT 61.684 60.000 0.00 0.00 0.00 2.85
2797 4229 0.106521 GCTGCTCCTCCATCCTCTTC 59.893 60.000 0.00 0.00 0.00 2.87
2798 4230 1.493861 CTGCTCCTCCATCCTCTTCA 58.506 55.000 0.00 0.00 0.00 3.02
2799 4231 1.836166 CTGCTCCTCCATCCTCTTCAA 59.164 52.381 0.00 0.00 0.00 2.69
2800 4232 1.556911 TGCTCCTCCATCCTCTTCAAC 59.443 52.381 0.00 0.00 0.00 3.18
2801 4233 1.134250 GCTCCTCCATCCTCTTCAACC 60.134 57.143 0.00 0.00 0.00 3.77
2802 4234 1.488393 CTCCTCCATCCTCTTCAACCC 59.512 57.143 0.00 0.00 0.00 4.11
2803 4235 0.548510 CCTCCATCCTCTTCAACCCC 59.451 60.000 0.00 0.00 0.00 4.95
2804 4236 1.589414 CTCCATCCTCTTCAACCCCT 58.411 55.000 0.00 0.00 0.00 4.79
2805 4237 2.629639 CCTCCATCCTCTTCAACCCCTA 60.630 54.545 0.00 0.00 0.00 3.53
2806 4238 2.436173 CTCCATCCTCTTCAACCCCTAC 59.564 54.545 0.00 0.00 0.00 3.18
2807 4239 1.490910 CCATCCTCTTCAACCCCTACC 59.509 57.143 0.00 0.00 0.00 3.18
2808 4240 1.490910 CATCCTCTTCAACCCCTACCC 59.509 57.143 0.00 0.00 0.00 3.69
2809 4241 0.494551 TCCTCTTCAACCCCTACCCA 59.505 55.000 0.00 0.00 0.00 4.51
2810 4242 1.132332 TCCTCTTCAACCCCTACCCAA 60.132 52.381 0.00 0.00 0.00 4.12
2811 4243 1.708551 CCTCTTCAACCCCTACCCAAA 59.291 52.381 0.00 0.00 0.00 3.28
2812 4244 2.109304 CCTCTTCAACCCCTACCCAAAA 59.891 50.000 0.00 0.00 0.00 2.44
2813 4245 3.154710 CTCTTCAACCCCTACCCAAAAC 58.845 50.000 0.00 0.00 0.00 2.43
2814 4246 2.158430 TCTTCAACCCCTACCCAAAACC 60.158 50.000 0.00 0.00 0.00 3.27
2815 4247 0.483770 TCAACCCCTACCCAAAACCC 59.516 55.000 0.00 0.00 0.00 4.11
2816 4248 0.485543 CAACCCCTACCCAAAACCCT 59.514 55.000 0.00 0.00 0.00 4.34
2817 4249 1.711942 CAACCCCTACCCAAAACCCTA 59.288 52.381 0.00 0.00 0.00 3.53
2818 4250 1.375610 ACCCCTACCCAAAACCCTAC 58.624 55.000 0.00 0.00 0.00 3.18
2819 4251 0.627451 CCCCTACCCAAAACCCTACC 59.373 60.000 0.00 0.00 0.00 3.18
2820 4252 0.627451 CCCTACCCAAAACCCTACCC 59.373 60.000 0.00 0.00 0.00 3.69
2821 4253 0.627451 CCTACCCAAAACCCTACCCC 59.373 60.000 0.00 0.00 0.00 4.95
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 3.230976 AGTCTATATCATGGTCGCCACA 58.769 45.455 0.50 0.00 35.80 4.17
57 58 0.244721 GGCTCCAAGTTGAACATGCC 59.755 55.000 3.87 6.62 0.00 4.40
115 121 4.539726 AGATGCTGAAATTATTGCCTCCA 58.460 39.130 0.00 0.00 0.00 3.86
174 180 5.242434 TGCAGGTCGAATAACTTGTGTATT 58.758 37.500 0.00 0.00 0.00 1.89
175 181 4.827692 TGCAGGTCGAATAACTTGTGTAT 58.172 39.130 0.00 0.00 0.00 2.29
177 183 3.067106 CTGCAGGTCGAATAACTTGTGT 58.933 45.455 5.57 0.00 0.00 3.72
204 211 3.441572 ACTGTTGTTATCAGCCAGCATTC 59.558 43.478 0.00 0.00 36.50 2.67
230 237 4.265904 TGGAATGTCTCTAAAAGCGTGA 57.734 40.909 0.00 0.00 0.00 4.35
316 323 5.857268 GTTAAGACTTAACACCCACCTACA 58.143 41.667 26.24 0.00 43.79 2.74
435 442 1.471684 GGCATCTCTCTTTTGTGCTGG 59.528 52.381 0.00 0.00 36.15 4.85
446 455 2.485814 GACAAAACACAGGGCATCTCTC 59.514 50.000 0.00 0.00 0.00 3.20
481 490 1.002242 TTTCCCAACTGGAGGGGGTT 61.002 55.000 6.81 0.00 46.24 4.11
482 491 1.002242 TTTTCCCAACTGGAGGGGGT 61.002 55.000 6.81 0.00 46.24 4.95
483 492 0.189822 TTTTTCCCAACTGGAGGGGG 59.810 55.000 6.81 0.00 46.24 5.40
515 527 6.837471 AAACATTTCGAGTAGAGTAGTCCT 57.163 37.500 0.00 0.00 0.00 3.85
517 529 6.692249 GGCTAAACATTTCGAGTAGAGTAGTC 59.308 42.308 0.00 0.00 0.00 2.59
549 561 6.182507 ACTGTTTTATGTACTTGTCCAGGA 57.817 37.500 0.00 0.00 0.00 3.86
671 683 2.143122 TCTGCGCCGATTGATAAATCC 58.857 47.619 4.18 0.00 0.00 3.01
685 705 0.610687 AATATCCCTAGCCTCTGCGC 59.389 55.000 0.00 0.00 44.33 6.09
706 726 4.464947 ACTTTTGTCTCTGAAAAGGGGAG 58.535 43.478 0.00 0.00 42.36 4.30
854 874 8.826710 GCTTGGTTTTAACTTTTAAATCTTGCT 58.173 29.630 0.00 0.00 0.00 3.91
855 875 8.067784 GGCTTGGTTTTAACTTTTAAATCTTGC 58.932 33.333 0.00 0.00 0.00 4.01
861 881 7.166167 TGGTTGGCTTGGTTTTAACTTTTAAA 58.834 30.769 0.00 0.00 0.00 1.52
891 915 4.445448 GCATGTTGATAGAGGAGGTCCATT 60.445 45.833 0.00 0.00 38.89 3.16
893 917 2.435805 GCATGTTGATAGAGGAGGTCCA 59.564 50.000 0.00 0.00 38.89 4.02
897 921 3.252701 GCAATGCATGTTGATAGAGGAGG 59.747 47.826 0.00 0.00 0.00 4.30
1260 1304 3.691342 TTGCAGTAGCGCGTCCCT 61.691 61.111 8.43 0.00 46.23 4.20
1509 1553 3.188100 ATGTCCATGACGCACGCG 61.188 61.111 10.36 10.36 46.03 6.01
1568 1612 3.467226 CCCTTCCTCCGGCGCTAA 61.467 66.667 7.64 0.00 0.00 3.09
1677 1721 2.443390 ATCCCCCAGTACGACCCG 60.443 66.667 0.00 0.00 0.00 5.28
1722 1766 4.508128 GCGAACCCGGCGATCTCA 62.508 66.667 9.30 0.00 36.06 3.27
1740 1784 2.887568 GAGATGACCACCTGCGCG 60.888 66.667 0.00 0.00 0.00 6.86
1870 1917 4.136051 GAGTACGGAGCAGGAGTAGTATT 58.864 47.826 0.00 0.00 0.00 1.89
1871 1918 3.496515 GGAGTACGGAGCAGGAGTAGTAT 60.497 52.174 0.00 0.00 0.00 2.12
1872 1919 2.158842 GGAGTACGGAGCAGGAGTAGTA 60.159 54.545 0.00 0.00 0.00 1.82
1873 1920 1.408544 GGAGTACGGAGCAGGAGTAGT 60.409 57.143 0.00 0.00 0.00 2.73
1874 1921 1.310904 GGAGTACGGAGCAGGAGTAG 58.689 60.000 0.00 0.00 0.00 2.57
1875 1922 0.463295 CGGAGTACGGAGCAGGAGTA 60.463 60.000 0.00 0.00 39.42 2.59
1876 1923 1.749638 CGGAGTACGGAGCAGGAGT 60.750 63.158 0.00 0.00 39.42 3.85
1920 1967 6.114767 ACGTGGACACCGGTTATATAATTTT 58.885 36.000 2.97 0.00 0.00 1.82
1977 2025 9.768662 ACGATTAAGGTTTTAAAGAGAACTACA 57.231 29.630 0.00 0.00 32.80 2.74
2095 2148 1.988015 GGTCGGGAAGATTGGACCA 59.012 57.895 4.29 0.00 46.43 4.02
2136 2195 4.835615 AGATGCTCTAACCATACACTAGGG 59.164 45.833 0.00 0.00 35.32 3.53
2137 2196 6.943146 TCTAGATGCTCTAACCATACACTAGG 59.057 42.308 0.00 0.00 0.00 3.02
2138 2197 7.987750 TCTAGATGCTCTAACCATACACTAG 57.012 40.000 0.00 0.00 0.00 2.57
2140 2199 6.239176 GCTTCTAGATGCTCTAACCATACACT 60.239 42.308 20.36 0.00 0.00 3.55
2161 3566 3.814945 CTGGATTTGTCAAGTTCGCTTC 58.185 45.455 0.00 0.00 34.74 3.86
2162 3567 2.030805 GCTGGATTTGTCAAGTTCGCTT 60.031 45.455 0.00 0.00 38.09 4.68
2167 3572 2.949447 AGGTGCTGGATTTGTCAAGTT 58.051 42.857 0.00 0.00 0.00 2.66
2181 3586 3.143728 CCCAGTAAACGTTAAAGGTGCT 58.856 45.455 0.00 0.00 0.00 4.40
2192 3597 0.320073 TCTCAACGCCCCAGTAAACG 60.320 55.000 0.00 0.00 0.00 3.60
2198 3603 1.374758 GTCACTCTCAACGCCCCAG 60.375 63.158 0.00 0.00 0.00 4.45
2199 3604 2.741092 GTCACTCTCAACGCCCCA 59.259 61.111 0.00 0.00 0.00 4.96
2201 3606 2.432628 CGGTCACTCTCAACGCCC 60.433 66.667 0.00 0.00 0.00 6.13
2202 3607 2.022129 CACGGTCACTCTCAACGCC 61.022 63.158 0.00 0.00 0.00 5.68
2203 3608 2.022129 CCACGGTCACTCTCAACGC 61.022 63.158 0.00 0.00 0.00 4.84
2204 3609 0.663568 GTCCACGGTCACTCTCAACG 60.664 60.000 0.00 0.00 0.00 4.10
2205 3610 0.387929 TGTCCACGGTCACTCTCAAC 59.612 55.000 0.00 0.00 0.00 3.18
2209 3614 2.920645 CGCTGTCCACGGTCACTCT 61.921 63.158 0.00 0.00 0.00 3.24
2211 3616 2.792947 AACGCTGTCCACGGTCACT 61.793 57.895 0.00 0.00 34.00 3.41
2219 3624 2.847234 ACCTCCCAACGCTGTCCA 60.847 61.111 0.00 0.00 0.00 4.02
2229 3634 1.722034 GCCATATGAGAGACCTCCCA 58.278 55.000 3.65 0.00 38.66 4.37
2241 3646 0.246360 TGCTACCGATCGGCCATATG 59.754 55.000 33.62 17.17 39.32 1.78
2406 3815 5.452496 GCACTCAGATCAACCTTATCTAGCA 60.452 44.000 0.00 0.00 32.40 3.49
2408 3817 6.403866 AGCACTCAGATCAACCTTATCTAG 57.596 41.667 0.00 0.00 32.40 2.43
2409 3818 7.229707 GTCTAGCACTCAGATCAACCTTATCTA 59.770 40.741 0.00 0.00 32.40 1.98
2410 3819 6.040391 GTCTAGCACTCAGATCAACCTTATCT 59.960 42.308 0.00 0.00 33.94 1.98
2421 3853 3.450457 CCTTCCAAGTCTAGCACTCAGAT 59.550 47.826 0.00 0.00 32.30 2.90
2424 3856 1.276421 GCCTTCCAAGTCTAGCACTCA 59.724 52.381 0.00 0.00 32.30 3.41
2462 3894 6.257849 GCTTCATAATGTCGTTAAGGTGATGA 59.742 38.462 0.00 0.00 0.00 2.92
2533 3965 2.679082 ACCAGCCGAATATACTCCAGT 58.321 47.619 0.00 0.00 0.00 4.00
2534 3966 3.069586 TGAACCAGCCGAATATACTCCAG 59.930 47.826 0.00 0.00 0.00 3.86
2535 3967 3.035363 TGAACCAGCCGAATATACTCCA 58.965 45.455 0.00 0.00 0.00 3.86
2536 3968 3.069729 ACTGAACCAGCCGAATATACTCC 59.930 47.826 0.00 0.00 34.37 3.85
2537 3969 4.323553 ACTGAACCAGCCGAATATACTC 57.676 45.455 0.00 0.00 34.37 2.59
2538 3970 4.755266 AACTGAACCAGCCGAATATACT 57.245 40.909 0.00 0.00 34.37 2.12
2539 3971 5.448632 CCAAAACTGAACCAGCCGAATATAC 60.449 44.000 0.00 0.00 34.37 1.47
2540 3972 4.638421 CCAAAACTGAACCAGCCGAATATA 59.362 41.667 0.00 0.00 34.37 0.86
2541 3973 3.443681 CCAAAACTGAACCAGCCGAATAT 59.556 43.478 0.00 0.00 34.37 1.28
2542 3974 2.817258 CCAAAACTGAACCAGCCGAATA 59.183 45.455 0.00 0.00 34.37 1.75
2543 3975 1.613437 CCAAAACTGAACCAGCCGAAT 59.387 47.619 0.00 0.00 34.37 3.34
2544 3976 1.028905 CCAAAACTGAACCAGCCGAA 58.971 50.000 0.00 0.00 34.37 4.30
2545 3977 0.106918 ACCAAAACTGAACCAGCCGA 60.107 50.000 0.00 0.00 34.37 5.54
2546 3978 1.535462 CTACCAAAACTGAACCAGCCG 59.465 52.381 0.00 0.00 34.37 5.52
2547 3979 2.583143 ACTACCAAAACTGAACCAGCC 58.417 47.619 0.00 0.00 34.37 4.85
2548 3980 4.097286 TCAAACTACCAAAACTGAACCAGC 59.903 41.667 0.00 0.00 34.37 4.85
2549 3981 5.828299 TCAAACTACCAAAACTGAACCAG 57.172 39.130 0.00 0.00 37.52 4.00
2550 3982 6.783708 ATTCAAACTACCAAAACTGAACCA 57.216 33.333 0.00 0.00 0.00 3.67
2551 3983 7.039270 ACAATTCAAACTACCAAAACTGAACC 58.961 34.615 0.00 0.00 0.00 3.62
2552 3984 9.575783 TTACAATTCAAACTACCAAAACTGAAC 57.424 29.630 0.00 0.00 0.00 3.18
2554 3986 9.959749 GATTACAATTCAAACTACCAAAACTGA 57.040 29.630 0.00 0.00 0.00 3.41
2555 3987 9.965824 AGATTACAATTCAAACTACCAAAACTG 57.034 29.630 0.00 0.00 0.00 3.16
2577 4009 9.084533 GGAGTCCAAGTATAGAAGTGATAGATT 57.915 37.037 3.60 0.00 0.00 2.40
2578 4010 8.228206 TGGAGTCCAAGTATAGAAGTGATAGAT 58.772 37.037 10.20 0.00 0.00 1.98
2579 4011 7.583625 TGGAGTCCAAGTATAGAAGTGATAGA 58.416 38.462 10.20 0.00 0.00 1.98
2580 4012 7.825331 TGGAGTCCAAGTATAGAAGTGATAG 57.175 40.000 10.20 0.00 0.00 2.08
2605 4037 9.914834 TGGGCTGTTTATATAAATACAAAGTCT 57.085 29.630 11.00 0.00 0.00 3.24
2611 4043 9.295825 CCTCAATGGGCTGTTTATATAAATACA 57.704 33.333 11.00 5.64 0.00 2.29
2628 4060 5.413833 GTGTATTGATCTATGCCTCAATGGG 59.586 44.000 7.78 0.00 41.10 4.00
2629 4061 5.999600 TGTGTATTGATCTATGCCTCAATGG 59.000 40.000 7.78 0.00 41.10 3.16
2630 4062 7.228108 AGTTGTGTATTGATCTATGCCTCAATG 59.772 37.037 7.78 0.00 41.10 2.82
2631 4063 7.285566 AGTTGTGTATTGATCTATGCCTCAAT 58.714 34.615 12.35 3.57 42.92 2.57
2632 4064 6.653020 AGTTGTGTATTGATCTATGCCTCAA 58.347 36.000 0.00 4.85 35.95 3.02
2633 4065 6.239217 AGTTGTGTATTGATCTATGCCTCA 57.761 37.500 0.00 0.00 0.00 3.86
2634 4066 8.839310 AATAGTTGTGTATTGATCTATGCCTC 57.161 34.615 0.00 0.00 0.00 4.70
2635 4067 9.935241 CTAATAGTTGTGTATTGATCTATGCCT 57.065 33.333 0.00 0.00 0.00 4.75
2636 4068 8.660373 GCTAATAGTTGTGTATTGATCTATGCC 58.340 37.037 0.00 0.00 0.00 4.40
2637 4069 9.208022 TGCTAATAGTTGTGTATTGATCTATGC 57.792 33.333 0.00 0.00 0.00 3.14
2641 4073 9.836864 TGATTGCTAATAGTTGTGTATTGATCT 57.163 29.630 0.00 0.00 0.00 2.75
2644 4076 9.612066 TGATGATTGCTAATAGTTGTGTATTGA 57.388 29.630 0.00 0.00 0.00 2.57
2647 4079 9.006839 CCATGATGATTGCTAATAGTTGTGTAT 57.993 33.333 0.00 0.00 0.00 2.29
2648 4080 7.992608 ACCATGATGATTGCTAATAGTTGTGTA 59.007 33.333 0.00 0.00 0.00 2.90
2649 4081 6.830324 ACCATGATGATTGCTAATAGTTGTGT 59.170 34.615 0.00 0.00 0.00 3.72
2650 4082 7.268199 ACCATGATGATTGCTAATAGTTGTG 57.732 36.000 0.00 0.00 0.00 3.33
2651 4083 9.224267 GATACCATGATGATTGCTAATAGTTGT 57.776 33.333 0.00 0.00 0.00 3.32
2652 4084 9.223099 TGATACCATGATGATTGCTAATAGTTG 57.777 33.333 0.00 0.00 0.00 3.16
2653 4085 9.445878 CTGATACCATGATGATTGCTAATAGTT 57.554 33.333 0.00 0.00 0.00 2.24
2654 4086 8.819845 TCTGATACCATGATGATTGCTAATAGT 58.180 33.333 0.00 0.00 0.00 2.12
2655 4087 9.096160 GTCTGATACCATGATGATTGCTAATAG 57.904 37.037 0.00 0.00 0.00 1.73
2656 4088 7.761249 CGTCTGATACCATGATGATTGCTAATA 59.239 37.037 0.00 0.00 0.00 0.98
2657 4089 6.592994 CGTCTGATACCATGATGATTGCTAAT 59.407 38.462 0.00 0.00 0.00 1.73
2658 4090 5.928264 CGTCTGATACCATGATGATTGCTAA 59.072 40.000 0.00 0.00 0.00 3.09
2659 4091 5.473039 CGTCTGATACCATGATGATTGCTA 58.527 41.667 0.00 0.00 0.00 3.49
2660 4092 4.313282 CGTCTGATACCATGATGATTGCT 58.687 43.478 0.00 0.00 0.00 3.91
2661 4093 3.120408 GCGTCTGATACCATGATGATTGC 60.120 47.826 0.00 0.00 0.00 3.56
2662 4094 3.434641 GGCGTCTGATACCATGATGATTG 59.565 47.826 0.00 0.00 0.00 2.67
2663 4095 3.326006 AGGCGTCTGATACCATGATGATT 59.674 43.478 0.00 0.00 0.00 2.57
2664 4096 2.902486 AGGCGTCTGATACCATGATGAT 59.098 45.455 0.00 0.00 0.00 2.45
2665 4097 2.319844 AGGCGTCTGATACCATGATGA 58.680 47.619 0.00 0.00 0.00 2.92
2666 4098 2.827800 AGGCGTCTGATACCATGATG 57.172 50.000 0.00 0.00 0.00 3.07
2667 4099 2.828520 CCTAGGCGTCTGATACCATGAT 59.171 50.000 0.00 0.00 0.00 2.45
2668 4100 2.239400 CCTAGGCGTCTGATACCATGA 58.761 52.381 0.00 0.00 0.00 3.07
2669 4101 1.964223 ACCTAGGCGTCTGATACCATG 59.036 52.381 9.30 0.00 0.00 3.66
2670 4102 2.383442 ACCTAGGCGTCTGATACCAT 57.617 50.000 9.30 0.00 0.00 3.55
2671 4103 2.154567 AACCTAGGCGTCTGATACCA 57.845 50.000 9.30 0.00 0.00 3.25
2672 4104 2.694109 AGAAACCTAGGCGTCTGATACC 59.306 50.000 9.30 0.00 0.00 2.73
2673 4105 3.707793 CAGAAACCTAGGCGTCTGATAC 58.292 50.000 27.37 4.66 39.94 2.24
2674 4106 2.100916 GCAGAAACCTAGGCGTCTGATA 59.899 50.000 32.23 0.00 39.94 2.15
2675 4107 1.134670 GCAGAAACCTAGGCGTCTGAT 60.135 52.381 32.23 3.50 39.94 2.90
2676 4108 0.246635 GCAGAAACCTAGGCGTCTGA 59.753 55.000 32.23 0.00 39.94 3.27
2677 4109 0.741221 GGCAGAAACCTAGGCGTCTG 60.741 60.000 27.17 27.17 40.40 3.51
2678 4110 1.597461 GGCAGAAACCTAGGCGTCT 59.403 57.895 9.30 8.93 0.00 4.18
2679 4111 1.449778 GGGCAGAAACCTAGGCGTC 60.450 63.158 9.30 6.43 0.00 5.19
2680 4112 1.900545 GAGGGCAGAAACCTAGGCGT 61.901 60.000 9.30 0.00 38.79 5.68
2681 4113 1.153349 GAGGGCAGAAACCTAGGCG 60.153 63.158 9.30 0.00 38.79 5.52
2682 4114 1.153349 CGAGGGCAGAAACCTAGGC 60.153 63.158 9.30 0.00 38.79 3.93
2683 4115 0.175989 GTCGAGGGCAGAAACCTAGG 59.824 60.000 7.41 7.41 38.79 3.02
2684 4116 0.895530 TGTCGAGGGCAGAAACCTAG 59.104 55.000 0.00 0.00 38.79 3.02
2685 4117 1.207089 CATGTCGAGGGCAGAAACCTA 59.793 52.381 0.00 0.00 38.79 3.08
2686 4118 0.036010 CATGTCGAGGGCAGAAACCT 60.036 55.000 0.00 0.00 42.18 3.50
2687 4119 1.026718 CCATGTCGAGGGCAGAAACC 61.027 60.000 0.00 0.00 0.00 3.27
2688 4120 2.471255 CCATGTCGAGGGCAGAAAC 58.529 57.895 0.00 0.00 0.00 2.78
2707 4139 2.815647 GAGGAGTTGGCGGCGAAG 60.816 66.667 12.98 0.00 0.00 3.79
2708 4140 4.388499 GGAGGAGTTGGCGGCGAA 62.388 66.667 12.98 0.00 0.00 4.70
2710 4142 4.821589 GAGGAGGAGTTGGCGGCG 62.822 72.222 0.51 0.51 0.00 6.46
2711 4143 4.475135 GGAGGAGGAGTTGGCGGC 62.475 72.222 0.00 0.00 0.00 6.53
2712 4144 4.148825 CGGAGGAGGAGTTGGCGG 62.149 72.222 0.00 0.00 0.00 6.13
2713 4145 4.821589 GCGGAGGAGGAGTTGGCG 62.822 72.222 0.00 0.00 0.00 5.69
2714 4146 3.394836 AGCGGAGGAGGAGTTGGC 61.395 66.667 0.00 0.00 0.00 4.52
2715 4147 2.581354 CAGCGGAGGAGGAGTTGG 59.419 66.667 0.00 0.00 0.00 3.77
2716 4148 2.125350 GCAGCGGAGGAGGAGTTG 60.125 66.667 0.00 0.00 0.00 3.16
2717 4149 3.394836 GGCAGCGGAGGAGGAGTT 61.395 66.667 0.00 0.00 0.00 3.01
2733 4165 4.883300 GTAGAGTCGTCGCGGCGG 62.883 72.222 34.24 14.98 36.23 6.13
2734 4166 4.156622 TGTAGAGTCGTCGCGGCG 62.157 66.667 29.79 29.79 36.23 6.46
2735 4167 1.699656 TAGTGTAGAGTCGTCGCGGC 61.700 60.000 6.13 1.93 0.00 6.53
2736 4168 0.935898 ATAGTGTAGAGTCGTCGCGG 59.064 55.000 6.13 0.00 0.00 6.46
2737 4169 1.591619 TGATAGTGTAGAGTCGTCGCG 59.408 52.381 0.00 0.00 0.00 5.87
2738 4170 2.286301 GGTGATAGTGTAGAGTCGTCGC 60.286 54.545 0.00 0.00 0.00 5.19
2739 4171 2.033917 CGGTGATAGTGTAGAGTCGTCG 60.034 54.545 0.00 0.00 0.00 5.12
2740 4172 3.193263 TCGGTGATAGTGTAGAGTCGTC 58.807 50.000 0.00 0.00 0.00 4.20
2741 4173 3.196463 CTCGGTGATAGTGTAGAGTCGT 58.804 50.000 0.00 0.00 0.00 4.34
2742 4174 3.196463 ACTCGGTGATAGTGTAGAGTCG 58.804 50.000 0.00 0.00 34.28 4.18
2743 4175 4.035441 GGAACTCGGTGATAGTGTAGAGTC 59.965 50.000 0.00 0.00 37.90 3.36
2744 4176 3.946558 GGAACTCGGTGATAGTGTAGAGT 59.053 47.826 0.00 0.00 40.22 3.24
2745 4177 3.002451 CGGAACTCGGTGATAGTGTAGAG 59.998 52.174 0.00 0.00 34.75 2.43
2746 4178 2.941064 CGGAACTCGGTGATAGTGTAGA 59.059 50.000 0.00 0.00 34.75 2.59
2747 4179 2.541178 GCGGAACTCGGTGATAGTGTAG 60.541 54.545 0.00 0.00 39.69 2.74
2748 4180 1.402968 GCGGAACTCGGTGATAGTGTA 59.597 52.381 0.00 0.00 39.69 2.90
2749 4181 0.172803 GCGGAACTCGGTGATAGTGT 59.827 55.000 0.00 0.00 39.69 3.55
2750 4182 0.866061 CGCGGAACTCGGTGATAGTG 60.866 60.000 0.00 0.00 39.69 2.74
2751 4183 1.432251 CGCGGAACTCGGTGATAGT 59.568 57.895 0.00 0.00 39.69 2.12
2752 4184 1.944676 GCGCGGAACTCGGTGATAG 60.945 63.158 8.83 0.00 36.88 2.08
2753 4185 2.103538 GCGCGGAACTCGGTGATA 59.896 61.111 8.83 0.00 36.88 2.15
2754 4186 4.814294 GGCGCGGAACTCGGTGAT 62.814 66.667 8.83 0.00 36.88 3.06
2775 4207 4.925861 GGATGGAGGAGCAGCGCC 62.926 72.222 7.17 7.17 0.00 6.53
2776 4208 3.805891 GAGGATGGAGGAGCAGCGC 62.806 68.421 0.00 0.00 0.00 5.92
2777 4209 1.684386 AAGAGGATGGAGGAGCAGCG 61.684 60.000 0.00 0.00 0.00 5.18
2778 4210 0.106521 GAAGAGGATGGAGGAGCAGC 59.893 60.000 0.00 0.00 0.00 5.25
2779 4211 1.493861 TGAAGAGGATGGAGGAGCAG 58.506 55.000 0.00 0.00 0.00 4.24
2780 4212 1.556911 GTTGAAGAGGATGGAGGAGCA 59.443 52.381 0.00 0.00 0.00 4.26
2781 4213 1.134250 GGTTGAAGAGGATGGAGGAGC 60.134 57.143 0.00 0.00 0.00 4.70
2782 4214 1.488393 GGGTTGAAGAGGATGGAGGAG 59.512 57.143 0.00 0.00 0.00 3.69
2783 4215 1.584724 GGGTTGAAGAGGATGGAGGA 58.415 55.000 0.00 0.00 0.00 3.71
2784 4216 0.548510 GGGGTTGAAGAGGATGGAGG 59.451 60.000 0.00 0.00 0.00 4.30
2785 4217 1.589414 AGGGGTTGAAGAGGATGGAG 58.411 55.000 0.00 0.00 0.00 3.86
2786 4218 2.478292 GTAGGGGTTGAAGAGGATGGA 58.522 52.381 0.00 0.00 0.00 3.41
2787 4219 1.490910 GGTAGGGGTTGAAGAGGATGG 59.509 57.143 0.00 0.00 0.00 3.51
2788 4220 1.490910 GGGTAGGGGTTGAAGAGGATG 59.509 57.143 0.00 0.00 0.00 3.51
2789 4221 1.082194 TGGGTAGGGGTTGAAGAGGAT 59.918 52.381 0.00 0.00 0.00 3.24
2790 4222 0.494551 TGGGTAGGGGTTGAAGAGGA 59.505 55.000 0.00 0.00 0.00 3.71
2791 4223 1.368374 TTGGGTAGGGGTTGAAGAGG 58.632 55.000 0.00 0.00 0.00 3.69
2792 4224 3.154710 GTTTTGGGTAGGGGTTGAAGAG 58.845 50.000 0.00 0.00 0.00 2.85
2793 4225 2.158430 GGTTTTGGGTAGGGGTTGAAGA 60.158 50.000 0.00 0.00 0.00 2.87
2794 4226 2.244695 GGTTTTGGGTAGGGGTTGAAG 58.755 52.381 0.00 0.00 0.00 3.02
2795 4227 1.133104 GGGTTTTGGGTAGGGGTTGAA 60.133 52.381 0.00 0.00 0.00 2.69
2796 4228 0.483770 GGGTTTTGGGTAGGGGTTGA 59.516 55.000 0.00 0.00 0.00 3.18
2797 4229 0.485543 AGGGTTTTGGGTAGGGGTTG 59.514 55.000 0.00 0.00 0.00 3.77
2798 4230 1.712510 GTAGGGTTTTGGGTAGGGGTT 59.287 52.381 0.00 0.00 0.00 4.11
2799 4231 1.375610 GTAGGGTTTTGGGTAGGGGT 58.624 55.000 0.00 0.00 0.00 4.95
2800 4232 0.627451 GGTAGGGTTTTGGGTAGGGG 59.373 60.000 0.00 0.00 0.00 4.79
2801 4233 0.627451 GGGTAGGGTTTTGGGTAGGG 59.373 60.000 0.00 0.00 0.00 3.53
2802 4234 0.627451 GGGGTAGGGTTTTGGGTAGG 59.373 60.000 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.