>input_sequence_67889
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---ATGAGGTACGGCGAGGTGGCGCACTTCAGCCACCCGCAGCACCGGCTCCGGCTGGAGCACCTGGACACGCCGTTCCG
GTGCGACGGCTGCAAGGAGGTCGGCATCGGCGCGCGTTACCGGTGCCCCGTCCAGGGCTGCGCCGCCGACCACGACCTCC
ACCGCCAATGCGCGCTCCCGCTCTCCCCGCCGCCGCCGCCGCTCCGGCACCCGTTCTACCCCAAGTGCGCCTTCCACTTC
ATGGCGCGCGCGCCGGGCGCCCCAGGGACGCGCTACTGCAACGCGTGCGGCCGCGACGTCGCCGGCTTCGTCTACCACTG
CCGCGCCTGCGGCTTCGACCTGCACCCCTGCTGCGCCACGCTCCCGCACGCCCTCGACGCCAGCGACCGCGGAGGCAGGG
TCGGCGTGAGGCTGTACCTGCACCCCAAGGCCGAGGCCGCGTGCCACCGGTGCGGCCACCGCGGGCGGAGCTGGACGTAC
CGGAGCCACTGCAAGAGCTACAGCCTCCACGTCGCGTGCGTCATGGACATGGTCGTCGAGAGCTGGAACGGCATCGGGCG
GAACAAGGGCGTTAGCGCCGGAGGAAGGGGCGTGTACGACGGCGCGTTGGTGGCGGGGAGCGGCGGGTACAGGGTGCCGG
TGATAAGGGGCGCGGCGAAGAGCAGCCACGCGAGCAGGGGCGGGTCGTACTGGGGGATGAGGAAGGGCAAGGTGAAGCGC
TGCTGTGAGATCGCCGGGTTCGCCGCGCAGGTGGTCATCTCCGCGGTGCTCGGTGACCCCACCGCGCTCATAGCCGGCGT
CGTCGGCTCGCTCATAGCGCGGTGA-------------------------------------------------------
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>chr5B_1_TraesCS5B01G070400
TGCATGTCCTGGGCTTGTGGCGACCATGATATAGACTACCACTTCAGTGTTGATGGCGGCATG-TTCAACTTGGAGCCGT
TGTTTTTCA----TATTAAACACAGAAGAACGTGACGATCTGGAGGCAATAATTTCAGCATCTTCTTTATCTGTGATCAT
CAGCCCTAATTCCTGCCTGAATACACAAGTTATTCGA-CCTGCAGCACCCGAATGCTGGCTGATAACAACAGTTTTTCAC
GCTTTTAGAGACATTCCAATCGTATTCTCTTATGTAAATCGGGGAATTTGTGCGCGTTTATCCTCATCATGAAGGGAAGA
ATTGTAGGTGGGTGTTAAGTCTTAACATTGAGTGCCGGGTGCTTCTGAACTTGTTGAAAGCAGGACTTGTAGGCAAGAGA
AGAACCGGAATAGTCTGACGCTGGAGGAACAAATGCCTGCACCAG--CACAAAAGAGAGATGCCCTGTGTTTTGTCAGTC
ACACAAACCAACC---CCCTCCAGTTGGGAAAAATGTGGTTGCAGAAGGACTACTCTACTCGAAATGTTTAGCCATATAT
TCCTGGACAAGTACATAAAACAGTAGAATTTCTTAAAATTGTGCTGAAACACTCTATTTAGAATGAGCAAATTTCAATCC
ATGGTACATCTGTAACAAATATATTTAGAACTTTGCAATAAAGGATTT--------ATCAATCGGCGCAGAGGCTAGGGA
TATTTCTCCCCTTTTCAGAGACAAAAGTTTTTTAACAAATATATTTGGCCATACATGATCATAGTACTGTCTTTGATATA
TTAGAGCAACCCCAAACACCTAAATCCAAAACGAAGAGAACATATTCTATTCTATTCCTCGACAACCTTCATCAGCAAGA
TT----TAAAAGTTAAAACCAAGCCAACCAACTCAATGGACCTCCTCTATCAACA--------------------TGCAT
TGCGCCAGTATAAATCTTCCTTGCTGCCAACTAGACCAAAAAACACAAAAGAATAGCACCACCTCGGAAGATAATCTGAA
GCCATGAGGTACGGCGAGGTGGCGCACTTCAGCCACCCGCAGCACCGGCTCCGGCTGGAGCACCTGGACACGCCGTTCCG
GTGCGACGGCTGCAAGGAGGTCGGCATCGGCGCGCGTTACCGGTGCCCCGTCCAGGGCTGCGCCGCCGACCACGACCTCC
ACCGCCAATGCGCGCTCCCGCTCTCCCCGCCGCCGCCGCCGCTCCGGCACCCGTTCTACCCCAAGTGCGCCTTCCACTTC
ATGGCGCGCGCGCCGGGCGCCCCAGGGACGCGCTACTGCAACGCGTGCGGCCGCGACGTCGCCGGCTTCGTCTACCACTG
CCGCGCCTGCGGCTTCGACCTGCACCCCTGCTGCGCCACGCTCCCGCACGCCCTCGACGCCAGCGACCGCGGAGGCAGGG
TCGGCGTGAGGCTGTACCTGCACCCCAAGGCCGAGGCCGCGTGCCACCGGTGCGGCCACCGCGGGCGGAGCTGGACGTAC
CGGAGCCACTGCAAGAGCTACAGCCTCCACGTCGCGTGCGTCATGGACATGGTCGTCGAGAGCTGGAACGGCATCGGGCG
GAACAAGGGCGTTAGCGCCGGAGGAAGGGGCGTGTACGACGGCGCGTTGGTGGCGGGGAGCGGCGGGTACAGGGTGCCGG
TGATAAGGGGCGCGGCGAAGAGCAGCCACGCGAGCAGGGGCGGGTCGTACTGGGGGATGAGGAAGGGCAAGGTGAAGCGC
TGCTGTGAGATCGCCGGGTTCGCCGCGCAGGTGGTCATCTCCGCGGTGCTCGGTGACCCCACCGCGCTCATAGCCGGCGT
CGTCGGCTCGCTCATAGCGCGGTGACCACCGCCG---GCCGCCGCGCTCTTGGAATGAAACATGTTGTAAATACTAAATA
CTACTCCTGCTCCGTACTCCGGACGTAACCTACGTGGCGCTGCATGAAAATTATATAACCGGTGTCCACGTCAGTGGATC
AATGTCC-CCACGTGTCAGTGTAGTGTAGTTCTCTTTAAAACCTTA--ATCGTGTTCCGGA--AAAAGGTG-AAAAATCC
TCAATCGTGTTGCGGTGATTGTCCCACAGTTTGGCACTTTGGCCCCTCCCAGCGTTGGTGAGGCCGATGG------TCCA
ATCTTCCCGACCGCCTCTCCGGCCACGGATGAGTCCCTAGTGTATGG---------------------------------
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---------------------------------TTAGAGCATCTAGAAGCGAACTTGACAAATCCAGCACCTTTAACGTT
TACTGGGGCGTTGAGAGTGACCGTGGACAGCGTTGGGAGGTCTCTCATATGGCCGATC-GGTAGCACCACACCTTAAATC
TAAACCTTCAAATCCATGCACATGGATCATATAATACAAATT---ATCACAATTTAATAGTTCTATAATGCAACAAAGCA
AAATAAATCATAGTTCAACAATTTCGACATGTCAAAATGAAATTCAAGTCTGAGTGCTAG--------------------
---ATAAGGTTGATCTGAGTGCTAGACTTGGAAGGCACCTCGGGTGTATTTGATCATCACCTTAACGACATTATGAAGCT
TTTTCATCTAAAATACCTTTCTTTAAGAGGATGTCCTCCTATTTACTGGAGTATATTCGGCTGGTTCAGTTTTGGTAGTT
TGAATTGTAATCTATCACTTCTATACTTGGACTCCAAGACTTTGTATTTATATAAACAGCCCATTGAGGCATAGATCAAT
ACACAACTATTAGCAATCATCATGGTATCAGACGCCTAGGTTTCTGCCCTCGACATGGCTTCGCCGCCAACTCCTCCTCC
GCTGCCGCCGCGACGACTCTACACTATCACCGAGTTCCGCGCCGCCGGCGCTGCTCCTCCATCCTCTTCAACCCCTACCC
AAAACCCTACCCC
>chr5D_1
TGCATGTCCTGGGCTCGTGGCGACCATGATATAGACTACCACTTCAGTGTTGATGGCTGCATGTTTCAACTTGGAGCCGT
TGTTTTTCGTACTTATTAAACACAGAAGAATGTGACGATCCGGAGGCAATAATTTCAGCA---TCTTTATCTGTGATCAT
CAGCCCTAATTCCTGCCTGCCTGCACAAGTTATTCGATCCTGCAGCACCCAAATGCTGGCTAATAACAACAGTTTTACAC
GCTTTTAGAGACATTCCAATCGTATTCTCTTATGTAAATCGGGGAATTTGTGCGCGTTTATCCACATCATGAAGGGAAGA
ATAGTAGGTGGGTGTTAAGTCCTAACATTGAGTGCCGGGTGCTTCTGAACTTGTTGAAAGCAGGATTTATAGGCAAGAGA
AGAACCGGAATAGTCTGACGCTGGAGGAACAGATGCCTGCAACAGCACACAAAAAAGAGATGCCCTGTGTTTTGTCAGTC
ACACAAACCG--CCCACCCTCCAGTTGGGAGAAATGTGGCTGCAGATGCACTACTCTACTCAAAATGTTTAGCCATATAT
GCCTGAACAAGTACATAAAACAGTAGAATTTCTTAAAATTGTGCTGGAACACTCTATTTAGAATGAGCAAATTTCAATCC
ATGGTACATCTGTAACAAATATATTTAGAACTTTGCAATAAAAGATTT--------ATCAATCGACGCAGAGGCTAGGGA
TATTTTTCCCCTTTTCAGAGACAAA-GTTTTTTAACAAATATATTTGGCCATACATGATCATAGTACTGTCTTTGATATA
TTAGAGCAACCCCAAACACCTAAATCCAAAACGAAGAGAACATATTCTATTCTATTCCTCGACAACCTTCATCTCCAAGA
CTTATATAAAAGTTAAAACCAAGCCAACCAACTCCA-GGATCTCCTCTATCAACA--------------------TGCAG
TGCGCCAGTATAAATCTTCCTTGCTGCCAACTCGACCAAAAAACACAAAAGAATAGCACCACCTCGGAAGATAATCTGAA
GCCATGAGGTACGGCGAGGTGGCGCACTTCAGCCACCCGCAGCACCGGCTCCGGCTGGAGCAACTGGACACGCCGTTCCG
CTGCGACGGCTGCAAGGAGGTTGGCATCGGCGCGCGTTACCGGTGCCCCGTCCAGGGCTGCGCCGCCGACCACGACCTCC
ACCGCCAATGCGCGCTCCCGCTCTCCCCGCCGCCGCCGCCGCTCCGGCACCCGTTCTACCCCAAGTGCGCCTTCCACTTC
ATGGCGCGCGCGCCGGGCGCCCCCGGGACGCGCTACTGCAACGCGTGCGGCCGCGACGTCGCCGGCTTCGTCTACCACTG
CCGCGCCTGCGGCTTCGACCTGCACCCCTGCTGCGCCACGCTCCCGCACGCCCTCGACGCCAGCGACCGCGGAGGCAGAG
TCGGCGTGAGGCTGTACCTGCACCCCAAGGCCGAGGCCGCGTGCCACCGGTGCGGCCACCGCGGGCGGAGCTGGACGTAC
CGGAGCCACTGCAAGAGCTACAGCCTCCACGTGGCGTGCGTCATGGACATGGTCGTCGAGAGCTGGAACGGCATCGGGCG
GAGCAAGGGCGCTAGCGCCGGAGGAAGGGGCGTGTACGACGGCGCGTTGGTGGCGGGGAGCGGCGGGTACAGGGTGCCGG
TGATAAGGGGCGCGGCGAAGAGCAGCCACGCGAGCAGGGGAGGGTCGTACTGGGGGATGAGGAAGGGCAAGGTGAAGCGC
TGCTGCGAGATCGCCGGGTTCGCGGCGCAGGTGGTCATCTCCGCGGTGCTCGGTGACCCCACCGCGCTCATAGCCGGCGT
CGTCGGCTCGCTCATAGCGCGGTGACCACCGCCGGCCGCCGCCGCGCTCTTGGAATGAAACATGTTGTAAATACTA----
---CTCCTGCTCCGTACTCCGGACGTAACCTACGTGGCGCTGCATGCAAATTATATAACCGGTGTCCACGTCAGTGCATC
AATGTCCCCCACGTGTCAGTGTAGCGTAGTTGTCTTTAAAACCTTATAATCGTGTTCCGGAGAAAAAGGTG-AAAAATCC
TCAATCGTGTTGCTGTGATTGTCCCCCAGTTTGGCACTTTGGCCCCACCCAGCGTTGGTGAGGCCGAGGGTCCAACTCCA
ATCTTCCCATCCGCCGCTTTGGCCACGGATGAGTATGTTTGCCCCACAAAATCTTGGCCCGTAAAACACGTTTACAGTTT
GACACGGAACTCGTTTGCGGGTCGAAAACGTGCGTAGCCGAACAGAAACCATATATAGAACATCATAATTTGAAAAAAAA
AGTTTCACGGAGAAATTGCAACCGTAGTAATTCATCACATACTACATATACTACATGATCAAACACTAATTCATTACAAA
CACTAGTTCATACTACATACTACGTTCACTACTAGTACTAGAGGGGGTGGGGATCTAACGGCGGCGAGCTCGCGGCCATG
GACGACGCGGTGGAGGAGCTCAATCCTCTTCGTCGCAGCTGCCGAGGTCGATGTACTTCGCCTTCTGCTCCTCGCAGATG
CGCCGCCACTCGTCGTCCTTCTCCTTGGCGGCAAGGTTCGCCGCGACCGCCTGCTGCAACCATTGTTCAAGATATCTTCC
GATATTCCGATAAATCAGCCGATTTATCGCTTATCGATGTCTGACCGATAAGACAAATCGGCCGATAAATCAGCCGATAT
GGCGATAAATCGACCGATATGCCGATAAACAGGCCGATTTTCCCCTTATCATGGGTCGACCGGTAAGTTCCTGATAAGCG
ATATCCCCAATATTGGCTGGAACACGAGGTCGTCGAGCTCCTCGTGGTGGCGCCGACGCTCCGCCTCCTCGCGCAAGCTA
CGTTCGGCAATGGCGGCGGCGACCGCGTCGACATCACCGACGAAGTCCTCGGGCCCGACGACGCCGCGGCGCACGATCTC
CTCGGGCTCCTGCTTGACGGCGACGACCTCGATCTTCTCCGGCTCCTCCGACCACTCCCTCTTCACGGGGAGAAGGCTCG
CGGTGGAGGACGAGCCCTCGGTGGAGGAGGGCGTGCGCCCGTGCCGACGGTCGTATTCCTCCGTCTCGTGGACGCGGAAG
CTCGGCGGCGGCGAGAGGCCCATGTTCGTCCACTTCCTCGCCCCGCGCTTCCTCGCGTCGTCCGACCGGACACGCCGCTA
GCGCTCGGGGTTGCCGCCGCCGCCGGATCTGCTCCCGGAGCCGCCGCCGGAGCACCACATGCCGCCCCACATGGCGGCTG
GAGGCGGAAGGGGCTCACCGGCGGCGAGAAATGTAAGGAGGGGAGTGGGGAATTGCGGAGAGACGCGACGGCGGGGGAAA
AGGGTTTCGACCCGCAAAGGCACCGCGAACCCGTAGATATACTGCTCGGGGGGCGGTTTGCGGGCCGCGGTAAAAAAAAT
TACGGGCCGGGTGAGTATACGGGCTCTGTTCTGGCCAGAAAATTGGGCCGAGCCCGTATACCCGCCAGAATTTTGCGGGT
TTGCGACTTTTGCGGGGTCTTCTAGAGTTGGTCTTAGAGCATCTACGGGCGTACTTGACAAATCTGGCACCTTTATTTTT
CCGGGCTCGTTTGGGCGTGACCGCGGATAGCGCCGGGAGGTCTCTTAAATGGCCGGTGGGGTAGCACCACACCTTAAATC
TAAACCTTCAAATCCATGCACGTGGATCATATAATACAAATT---ATCATAATTCAATAATTCTATAATGCAAAAAAACA
AAATAAACCATAGTTCAATAATCTCGACATGTCAAAATGGAATTCAAGTCCCAAGGGGGGGGGCAAGCCACTTCTCTGCT
AATATAAGGTTGCTCCGAGTGCTAGACTTGGAAGGCACCTCGGGTGTATTTGACCATCACCTTAACGACAATATGAAGCT
TTTTCACCTAAAATACCTTTCTTTAAGAGGATGTCCTCCTATTT------------------------------------
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>chr5A_1
TGCATGTTCTGGGCTCGTGGCGACCATGATATAGACTACCACTTCAGTGCTGATGGGTGCATGTTTCAACTTGGAGCAGT
TGTTTTTCA----TATTAAACACAGAAGAACGTGACGATCCGGATGCAATAATTTCAGCATCTTCTTTATCTGTGATCAT
CAGCCCTAATTCCTGCCTGCCTGCACAAGTTATTCGATCCTGCAGCACCCAAATGCTGGCTGATAACAACAG-TTTGCAC
GCTTTTAGGGACATTCCAACCGTATTCTCCTATGTAAATCAGGGAATTTGTGCGTGCTCATCCTCGTTATCAAGGGAAGA
ATAGTATGTGGGTGTTAATTGTTAACATTGAGTGCCGGGTGCTTCTGAACTTGTTGAAAGCAGGAATAGTGGGCAAGAGA
AGAACCGGAATAGTCTGACGCTGGAGGAACAGATGCCTGCAACAGCACACAAAAAAGAGATGCCCTGTGTTTTGTCAGTC
ATACAAACCG--C---CCCTCCAGTTGGGAAAAATGTGGTCGCAGATGCACTACTCTACTCGAAATGTTTAGCCATATAT
GCCTGAACAAGTACATAAAACAGTAGAATTTCTTAAAATTGTGCTGAAACACTCTATTTAGAATGAGCAAATTTCAATCC
ATGGCAC-TCTGTAACAAATATACTTAAAACTTCGGAATAAAATGGGGCTACGTGCATCAATCGACGAAGAAACAAAG--
----------------------------TTTTTAACAAATATATTTGGCCATACATGATCATAGTACTGTCTTTGATATA
TTAGAGCAACCCCAAACACCTAAATCCAAAACGAAGAGAACATATCCTATTCTATTCCTCGACAACCTTCATCTCCAAGA
CTTGTATAAAAGTTAAAACCAAGCCAACCAACTCCA-GGATCTCCTCTATCAAGTATCAACATGCATTGCATATTTGCAT
TGCACCAGTATAAATCTTCCTTGCTGCCAGCTCGACCAAAGAACACAAAAGAATAGCACCACCTCGGAAGCTAATCAGAG
GCCATGAGGTACGGCGAGGTGGCGCACTTCAGCCACCCGCAGCACCGGCTCCGGCTGGAGCAACTGGACACGCCGTTCCG
GTGCGACGGCTGCAAGGAGGTCGGCATCGGCGCGCGTTACCGCTGCCCCGTCCAGGGCTGCGCCGCCGACCACGACCTCC
ACCGCCAATGCGCGCTCCCGCTCTCCCCGCCGCCGCCGCCGCTCCGGCACCCGTTCTACCCCAAGTGCGCCTTCCACTTC
ATGGCGCGCGCGCCGGGCGCCCCCGGGACGCGCTACTGCAACGCGTGCGGCCGCGACGTCGCCGGCTTCGTCTACCACTG
CCGCGCCTGCGGCTTCGACCTGCACCCCTGCTGCGCCACGCTGCCGCACGCCCTGGACGCCAGCGACCGCGGTGGCAGGG
TCGGCGTGAGGCTGTACCTGCACCCCAAGGCCGAGGCCGCGTGCCACCGGTGCGGCCACCGCGGGCGGAGCTGGACGTAC
CGAAGCCACTGCAAGAGCTACAGCCTCCACGTGGCGTGCGTGATGGACATGGTCGTCGAGAGCTGGAGCGGCATCGGGCG
GAGCAAGGGCGCTAGCGCCGGAGGAAGGGGCGTGTACGACGGTGCGTTGGTGGCGGGGAGCGGCGGGTACAGGGTGCCGG
TGATAAGGGGCGCGGCGAAGAGCAGCCACGCGAGCCGGGGAGGGTCGTACTGGGGGATGAGGAAGGGCAAGGTGAAGCGC
TGCTGCGAGATCGCCGGGTTCGCGGCGCAGGTGGTCATCTCCGCGGTGCTCGGTGACCCCACCGCGCTCATAGCCGGCGT
CGTCGGCTCGCTCATAGCGCGGTGACCACTGCCGGGCGCCGCCGTGCTCTTGGAGTGAAACATGTTGTAAATACTA----
---CTCCTGCTCCGTACTCCGGACGTGACCTACGTGGCGCTGCATGCAAATTATATAACCGGTGTCCACGTCAGTGGATC
AATGCCC-CCGCGTGTCAGTGTAGCGTAGTTCTCTTTAAAACCTTATTATCGTGTTCCGGAGAAAAAGGTAAAAAAATCC
TCAATCGTGTTGCGGTGATTGTCCCACAGTTTGGCACTTTGGCCCCTGCCAGCGTTGGTGAGGCCGAGGG------TCCA
ATCTTCCCGTCCGCCGCTCCG------------------GTGTATGG---------------------------------
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---------------------------------TTAGAGCATCTACGAGCA-----GACAAATCCGGCACCCTAAAAGTT
TA---------TGGACGTGACCGCTAACAGCGTCAAACGGTCTCTTATATAGTCAATCGAGTAGTAGCACACCTTAAATC
TAAACCATTAAATTCATGTATGTGGATCATATATAGCACAAATTCATCATAATTCAACAGTTTTATAAGGCAATAAAGTA
AAAGAAGTCACAGTTTAACAATTTGGACATGCCAAAATGAAATTTAAATATGAG--------------------------
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>SNPs
---------------S-----------------------------------------S----------------------
----------------------------------------S---------------------------------------
-------------------SS-S---------------------------S-------------------------S---
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--S--------------------------------------------------------------S--------------
-------------------------------S---------S------------S-------------------------
---------SSS----------------------------------S-S-------------------------------
S----S--------------------------------------------------------------------------
------------------------------------------S---------------------S---------------
-----S-------------------S------------------------------------------------------
-------------------------------------------------------------------------SS-----
S---------------------------------S-S---S---------------------------------------
--------------------------------S-----------------------------------------------
--------------------------------------------------------------S-----------------
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-----------------------S--------------------------------------------------------
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--------------------------------S-----------------------------------------------
--S--------S--------------------------------------------------------------------
----------------------------------------S---------------------------------------
-----S-----------------S--------------------------------------------------------
----------------------------------------------------------------------------SSSS
SSS-------------------------------------------S---------------------------------
------------------------S-------------------------------------------------------
-------------------------------------------------------------------S------------
---------S-----S------------------SSS-S-----------------------------------------
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---------------------------------------------SS----S-------------S----------S---
--SS-SSSSS---S-S-------S---------S-----------S----------------------------------
---------------------S---------------------------S----S------------------S------
------------------------------------------------------S-SSS---------------------
------------S--S-------------------------------------S----------------S---------
------S-------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS
>forward_432
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------------GTCTGACGCTGGAGGAACAA------------------------------------------------
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>reverse_3646
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---------------------------------------------CATATGGCCGATCGGTAGCA---------------
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