Multiple sequence alignment - TraesCS5B01G070300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G070300 chr5B 100.000 2684 0 0 1 2684 81195671 81192988 0.000000e+00 4957.0
1 TraesCS5B01G070300 chr5B 83.291 395 35 16 1419 1792 711573390 711573006 4.280000e-88 335.0
2 TraesCS5B01G070300 chr5B 93.333 45 3 0 2618 2662 391397308 391397352 1.720000e-07 67.6
3 TraesCS5B01G070300 chr5B 90.000 50 2 3 2621 2667 700330061 700330012 8.020000e-06 62.1
4 TraesCS5B01G070300 chr5D 91.130 947 50 20 922 1845 73400090 73399155 0.000000e+00 1253.0
5 TraesCS5B01G070300 chr5D 90.094 747 58 8 1867 2608 73399026 73398291 0.000000e+00 955.0
6 TraesCS5B01G070300 chr5D 81.731 728 67 31 922 1593 73464680 73463963 5.050000e-152 547.0
7 TraesCS5B01G070300 chr5D 85.870 368 35 9 82 445 73407706 73407352 2.520000e-100 375.0
8 TraesCS5B01G070300 chr5D 86.139 303 34 6 391 686 73464980 73464679 1.200000e-83 320.0
9 TraesCS5B01G070300 chr5D 88.664 247 12 5 103 349 73465462 73465232 1.220000e-73 287.0
10 TraesCS5B01G070300 chr5D 92.381 105 7 1 1 105 73465735 73465632 5.990000e-32 148.0
11 TraesCS5B01G070300 chr5D 93.671 79 2 3 610 686 73400166 73400089 6.070000e-22 115.0
12 TraesCS5B01G070300 chr5A 85.628 988 47 45 918 1845 68551397 68550445 0.000000e+00 950.0
13 TraesCS5B01G070300 chr5A 89.157 747 65 7 1867 2609 68550309 68549575 0.000000e+00 917.0
14 TraesCS5B01G070300 chr5A 85.742 519 43 19 185 686 68551896 68551392 1.100000e-143 520.0
15 TraesCS5B01G070300 chr5A 94.017 117 7 0 3 119 68552035 68551919 7.640000e-41 178.0
16 TraesCS5B01G070300 chr7A 84.772 394 31 14 1419 1792 12398582 12398966 4.220000e-98 368.0
17 TraesCS5B01G070300 chr7A 90.074 272 24 2 2288 2559 522495208 522495476 1.530000e-92 350.0
18 TraesCS5B01G070300 chr7B 94.118 238 14 0 685 922 303761671 303761434 1.960000e-96 363.0
19 TraesCS5B01G070300 chr7B 93.061 245 16 1 683 926 563089522 563089766 9.140000e-95 357.0
20 TraesCS5B01G070300 chr7B 89.706 272 25 1 2288 2559 497883174 497882906 7.110000e-91 344.0
21 TraesCS5B01G070300 chr1B 93.333 240 16 0 685 924 615590004 615589765 3.290000e-94 355.0
22 TraesCS5B01G070300 chr4B 93.305 239 16 0 685 923 468835958 468835720 1.180000e-93 353.0
23 TraesCS5B01G070300 chr4B 91.667 252 19 2 676 926 359759476 359759726 5.500000e-92 348.0
24 TraesCS5B01G070300 chr4B 95.455 44 2 0 2619 2662 423356778 423356735 1.330000e-08 71.3
25 TraesCS5B01G070300 chr2B 92.975 242 17 0 682 923 176251742 176251983 1.180000e-93 353.0
26 TraesCS5B01G070300 chr2B 92.946 241 16 1 683 923 576525849 576526088 1.530000e-92 350.0
27 TraesCS5B01G070300 chr2B 90.377 239 22 1 685 923 39604662 39604425 2.010000e-81 313.0
28 TraesCS5B01G070300 chr2B 93.478 46 2 1 2618 2662 768069055 768069100 1.720000e-07 67.6
29 TraesCS5B01G070300 chr2B 93.478 46 2 1 2618 2662 768079847 768079892 1.720000e-07 67.6
30 TraesCS5B01G070300 chr3B 92.653 245 17 1 683 926 163440436 163440192 4.250000e-93 351.0
31 TraesCS5B01G070300 chr3B 95.455 44 2 0 2619 2662 553186645 553186688 1.330000e-08 71.3
32 TraesCS5B01G070300 chrUn 92.562 242 18 0 682 923 59805084 59805325 5.500000e-92 348.0
33 TraesCS5B01G070300 chr7D 88.235 272 29 1 2288 2559 473624199 473623931 3.330000e-84 322.0
34 TraesCS5B01G070300 chr7D 82.534 292 21 13 1554 1822 60613746 60613462 2.080000e-56 230.0
35 TraesCS5B01G070300 chr7D 88.095 84 8 2 1419 1502 60613825 60613744 6.120000e-17 99.0
36 TraesCS5B01G070300 chr7D 84.375 96 12 1 1867 1962 60613373 60613281 1.020000e-14 91.6
37 TraesCS5B01G070300 chr7D 97.872 47 1 0 2616 2662 571261948 571261994 6.160000e-12 82.4
38 TraesCS5B01G070300 chr2A 95.652 46 2 0 2616 2661 40444860 40444905 1.030000e-09 75.0
39 TraesCS5B01G070300 chr6B 91.489 47 4 0 2616 2662 655769022 655768976 6.200000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G070300 chr5B 81192988 81195671 2683 True 4957.000000 4957 100.000000 1 2684 1 chr5B.!!$R1 2683
1 TraesCS5B01G070300 chr5D 73398291 73400166 1875 True 774.333333 1253 91.631667 610 2608 3 chr5D.!!$R2 1998
2 TraesCS5B01G070300 chr5D 73463963 73465735 1772 True 325.500000 547 87.228750 1 1593 4 chr5D.!!$R3 1592
3 TraesCS5B01G070300 chr5A 68549575 68552035 2460 True 641.250000 950 88.636000 3 2609 4 chr5A.!!$R1 2606

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
406 786 0.254747 AAACTGCGGCTGGGCTAATA 59.745 50.0 11.64 0.0 0.0 0.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2250 2858 0.249322 TCTTATAGCGCGGTCCTTGC 60.249 55.0 16.92 0.0 0.0 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
162 332 5.298347 ACCAAAGACTAGTGTACAAGCTTC 58.702 41.667 0.00 0.00 0.00 3.86
163 333 5.163343 ACCAAAGACTAGTGTACAAGCTTCA 60.163 40.000 0.00 0.00 0.00 3.02
165 335 6.091441 CCAAAGACTAGTGTACAAGCTTCATC 59.909 42.308 0.00 0.00 0.00 2.92
178 348 1.076559 TTCATCAGGCAGCCATGGG 60.077 57.895 15.80 0.00 0.00 4.00
181 351 0.469331 CATCAGGCAGCCATGGGAAT 60.469 55.000 15.80 0.00 0.00 3.01
182 352 0.469331 ATCAGGCAGCCATGGGAATG 60.469 55.000 15.80 0.52 0.00 2.67
183 353 2.131709 CAGGCAGCCATGGGAATGG 61.132 63.158 15.80 0.15 44.44 3.16
189 359 3.144285 CCATGGGAATGGCATGGC 58.856 61.111 13.29 13.29 39.29 4.40
190 360 2.732016 CATGGGAATGGCATGGCG 59.268 61.111 15.27 0.00 0.00 5.69
191 361 1.829096 CATGGGAATGGCATGGCGA 60.829 57.895 15.27 4.31 0.00 5.54
192 362 1.529948 ATGGGAATGGCATGGCGAG 60.530 57.895 15.27 0.00 0.00 5.03
399 779 0.532573 TCTCTAGAAACTGCGGCTGG 59.467 55.000 11.64 2.14 0.00 4.85
404 784 1.674322 GAAACTGCGGCTGGGCTAA 60.674 57.895 11.64 0.00 0.00 3.09
406 786 0.254747 AAACTGCGGCTGGGCTAATA 59.745 50.000 11.64 0.00 0.00 0.98
407 787 0.474184 AACTGCGGCTGGGCTAATAT 59.526 50.000 11.64 0.00 0.00 1.28
445 827 5.106317 CCGGCAAAGTTATGACACAAACTAT 60.106 40.000 5.65 0.00 34.91 2.12
446 828 6.378582 CGGCAAAGTTATGACACAAACTATT 58.621 36.000 5.65 1.86 34.91 1.73
448 830 8.018520 CGGCAAAGTTATGACACAAACTATTTA 58.981 33.333 5.65 0.00 34.91 1.40
449 831 9.685828 GGCAAAGTTATGACACAAACTATTTAA 57.314 29.630 5.65 0.00 34.91 1.52
485 867 3.508762 GTCATCGACACACCTAATCGTT 58.491 45.455 0.00 0.00 37.16 3.85
493 875 3.436704 ACACACCTAATCGTTGCATTCTG 59.563 43.478 0.00 0.00 0.00 3.02
496 878 4.154195 ACACCTAATCGTTGCATTCTGTTC 59.846 41.667 0.00 0.00 0.00 3.18
499 884 2.880822 ATCGTTGCATTCTGTTCGTG 57.119 45.000 0.00 0.00 0.00 4.35
504 889 1.521580 TGCATTCTGTTCGTGCATGA 58.478 45.000 3.97 3.97 43.30 3.07
537 922 0.722848 GCAATGATTTGGGCAAAGCG 59.277 50.000 0.00 0.00 39.36 4.68
541 926 1.154035 GATTTGGGCAAAGCGGTCG 60.154 57.895 0.00 0.00 33.32 4.79
542 927 1.862602 GATTTGGGCAAAGCGGTCGT 61.863 55.000 0.00 0.00 33.32 4.34
566 958 3.631453 TGTGCTCCACAACTCATCC 57.369 52.632 0.00 0.00 41.69 3.51
568 960 0.326264 GTGCTCCACAACTCATCCCT 59.674 55.000 0.00 0.00 34.08 4.20
578 970 3.267812 ACAACTCATCCCTCATCACCATT 59.732 43.478 0.00 0.00 0.00 3.16
607 999 1.664649 CAGTGCGTGCGAGAGGAAA 60.665 57.895 0.00 0.00 0.00 3.13
608 1000 1.373497 AGTGCGTGCGAGAGGAAAG 60.373 57.895 0.00 0.00 0.00 2.62
666 1063 0.762418 ACGTGAAACCATGTCCTCCA 59.238 50.000 0.00 0.00 0.00 3.86
684 1081 4.141390 CCTCCAGCTACCTGTTTCCATAAT 60.141 45.833 0.00 0.00 37.38 1.28
685 1082 5.071788 CCTCCAGCTACCTGTTTCCATAATA 59.928 44.000 0.00 0.00 37.38 0.98
686 1083 5.925509 TCCAGCTACCTGTTTCCATAATAC 58.074 41.667 0.00 0.00 37.38 1.89
687 1084 5.665812 TCCAGCTACCTGTTTCCATAATACT 59.334 40.000 0.00 0.00 37.38 2.12
688 1085 6.842280 TCCAGCTACCTGTTTCCATAATACTA 59.158 38.462 0.00 0.00 37.38 1.82
689 1086 6.929606 CCAGCTACCTGTTTCCATAATACTAC 59.070 42.308 0.00 0.00 37.38 2.73
690 1087 6.929606 CAGCTACCTGTTTCCATAATACTACC 59.070 42.308 0.00 0.00 34.31 3.18
691 1088 6.844917 AGCTACCTGTTTCCATAATACTACCT 59.155 38.462 0.00 0.00 0.00 3.08
692 1089 7.015389 AGCTACCTGTTTCCATAATACTACCTC 59.985 40.741 0.00 0.00 0.00 3.85
693 1090 6.496144 ACCTGTTTCCATAATACTACCTCC 57.504 41.667 0.00 0.00 0.00 4.30
694 1091 5.070047 ACCTGTTTCCATAATACTACCTCCG 59.930 44.000 0.00 0.00 0.00 4.63
695 1092 5.070047 CCTGTTTCCATAATACTACCTCCGT 59.930 44.000 0.00 0.00 0.00 4.69
696 1093 6.407752 CCTGTTTCCATAATACTACCTCCGTT 60.408 42.308 0.00 0.00 0.00 4.44
697 1094 6.576185 TGTTTCCATAATACTACCTCCGTTC 58.424 40.000 0.00 0.00 0.00 3.95
698 1095 5.443185 TTCCATAATACTACCTCCGTTCG 57.557 43.478 0.00 0.00 0.00 3.95
699 1096 3.822735 TCCATAATACTACCTCCGTTCGG 59.177 47.826 4.74 4.74 0.00 4.30
700 1097 3.057033 CCATAATACTACCTCCGTTCGGG 60.057 52.174 11.37 2.52 37.02 5.14
701 1098 2.149973 AATACTACCTCCGTTCGGGT 57.850 50.000 11.37 5.06 39.40 5.28
702 1099 2.149973 ATACTACCTCCGTTCGGGTT 57.850 50.000 11.37 0.00 37.07 4.11
703 1100 1.923356 TACTACCTCCGTTCGGGTTT 58.077 50.000 11.37 0.00 37.07 3.27
704 1101 1.923356 ACTACCTCCGTTCGGGTTTA 58.077 50.000 11.37 0.04 37.07 2.01
705 1102 2.460669 ACTACCTCCGTTCGGGTTTAT 58.539 47.619 11.37 0.00 37.07 1.40
706 1103 2.833943 ACTACCTCCGTTCGGGTTTATT 59.166 45.455 11.37 0.00 37.07 1.40
707 1104 2.103537 ACCTCCGTTCGGGTTTATTG 57.896 50.000 11.37 0.00 37.00 1.90
708 1105 1.339342 ACCTCCGTTCGGGTTTATTGG 60.339 52.381 11.37 5.52 37.00 3.16
709 1106 1.339342 CCTCCGTTCGGGTTTATTGGT 60.339 52.381 11.37 0.00 37.00 3.67
710 1107 2.004733 CTCCGTTCGGGTTTATTGGTC 58.995 52.381 11.37 0.00 37.00 4.02
711 1108 1.089112 CCGTTCGGGTTTATTGGTCC 58.911 55.000 3.04 0.00 0.00 4.46
712 1109 1.339342 CCGTTCGGGTTTATTGGTCCT 60.339 52.381 3.04 0.00 0.00 3.85
713 1110 2.004733 CGTTCGGGTTTATTGGTCCTC 58.995 52.381 0.00 0.00 0.00 3.71
714 1111 2.613474 CGTTCGGGTTTATTGGTCCTCA 60.613 50.000 0.00 0.00 0.00 3.86
715 1112 3.617284 GTTCGGGTTTATTGGTCCTCAT 58.383 45.455 0.00 0.00 0.00 2.90
716 1113 4.014406 GTTCGGGTTTATTGGTCCTCATT 58.986 43.478 0.00 0.00 0.00 2.57
717 1114 5.187687 GTTCGGGTTTATTGGTCCTCATTA 58.812 41.667 0.00 0.00 0.00 1.90
718 1115 5.640158 TCGGGTTTATTGGTCCTCATTAT 57.360 39.130 0.00 0.00 0.00 1.28
719 1116 6.750660 TCGGGTTTATTGGTCCTCATTATA 57.249 37.500 0.00 0.00 0.00 0.98
720 1117 7.324388 TCGGGTTTATTGGTCCTCATTATAT 57.676 36.000 0.00 0.00 0.00 0.86
721 1118 7.751646 TCGGGTTTATTGGTCCTCATTATATT 58.248 34.615 0.00 0.00 0.00 1.28
722 1119 8.221944 TCGGGTTTATTGGTCCTCATTATATTT 58.778 33.333 0.00 0.00 0.00 1.40
723 1120 8.512138 CGGGTTTATTGGTCCTCATTATATTTC 58.488 37.037 0.00 0.00 0.00 2.17
724 1121 8.512138 GGGTTTATTGGTCCTCATTATATTTCG 58.488 37.037 0.00 0.00 0.00 3.46
725 1122 9.063615 GGTTTATTGGTCCTCATTATATTTCGT 57.936 33.333 0.00 0.00 0.00 3.85
726 1123 9.878599 GTTTATTGGTCCTCATTATATTTCGTG 57.121 33.333 0.00 0.00 0.00 4.35
727 1124 6.560253 ATTGGTCCTCATTATATTTCGTGC 57.440 37.500 0.00 0.00 0.00 5.34
728 1125 4.385825 TGGTCCTCATTATATTTCGTGCC 58.614 43.478 0.00 0.00 0.00 5.01
729 1126 4.141597 TGGTCCTCATTATATTTCGTGCCA 60.142 41.667 0.00 0.00 0.00 4.92
730 1127 4.819630 GGTCCTCATTATATTTCGTGCCAA 59.180 41.667 0.00 0.00 0.00 4.52
731 1128 5.298276 GGTCCTCATTATATTTCGTGCCAAA 59.702 40.000 0.00 0.00 0.00 3.28
732 1129 6.016276 GGTCCTCATTATATTTCGTGCCAAAT 60.016 38.462 0.00 0.00 0.00 2.32
733 1130 7.425606 GTCCTCATTATATTTCGTGCCAAATT 58.574 34.615 0.00 0.00 0.00 1.82
734 1131 7.920682 GTCCTCATTATATTTCGTGCCAAATTT 59.079 33.333 0.00 0.00 0.00 1.82
735 1132 8.474025 TCCTCATTATATTTCGTGCCAAATTTT 58.526 29.630 0.00 0.00 0.00 1.82
736 1133 8.542132 CCTCATTATATTTCGTGCCAAATTTTG 58.458 33.333 1.99 1.99 0.00 2.44
737 1134 9.299963 CTCATTATATTTCGTGCCAAATTTTGA 57.700 29.630 10.72 0.00 0.00 2.69
738 1135 9.814899 TCATTATATTTCGTGCCAAATTTTGAT 57.185 25.926 10.72 0.00 0.00 2.57
740 1137 9.814899 ATTATATTTCGTGCCAAATTTTGATCA 57.185 25.926 10.72 5.51 0.00 2.92
741 1138 9.814899 TTATATTTCGTGCCAAATTTTGATCAT 57.185 25.926 10.72 0.00 0.00 2.45
743 1140 7.760131 ATTTCGTGCCAAATTTTGATCATAG 57.240 32.000 10.72 6.95 0.00 2.23
744 1141 6.507958 TTCGTGCCAAATTTTGATCATAGA 57.492 33.333 10.72 8.68 0.00 1.98
745 1142 6.698008 TCGTGCCAAATTTTGATCATAGAT 57.302 33.333 10.72 0.00 0.00 1.98
746 1143 7.099266 TCGTGCCAAATTTTGATCATAGATT 57.901 32.000 10.72 0.00 0.00 2.40
747 1144 8.219546 TCGTGCCAAATTTTGATCATAGATTA 57.780 30.769 10.72 0.00 0.00 1.75
748 1145 8.681806 TCGTGCCAAATTTTGATCATAGATTAA 58.318 29.630 10.72 0.00 0.00 1.40
749 1146 9.299963 CGTGCCAAATTTTGATCATAGATTAAA 57.700 29.630 10.72 0.00 0.00 1.52
778 1175 9.800433 AACAAAATATTCACGCATATCATCAAA 57.200 25.926 0.00 0.00 0.00 2.69
779 1176 9.236691 ACAAAATATTCACGCATATCATCAAAC 57.763 29.630 0.00 0.00 0.00 2.93
780 1177 9.235537 CAAAATATTCACGCATATCATCAAACA 57.764 29.630 0.00 0.00 0.00 2.83
781 1178 9.970395 AAAATATTCACGCATATCATCAAACAT 57.030 25.926 0.00 0.00 0.00 2.71
782 1179 9.970395 AAATATTCACGCATATCATCAAACATT 57.030 25.926 0.00 0.00 0.00 2.71
840 1237 9.763465 CCAATGAAATAATTTTTCTTGACATGC 57.237 29.630 0.00 0.00 0.00 4.06
852 1249 9.932699 TTTTTCTTGACATGCATTAACATTTTG 57.067 25.926 0.00 0.00 0.00 2.44
853 1250 8.659925 TTTCTTGACATGCATTAACATTTTGT 57.340 26.923 0.00 0.00 0.00 2.83
854 1251 8.659925 TTCTTGACATGCATTAACATTTTGTT 57.340 26.923 0.00 0.00 43.88 2.83
855 1252 9.755804 TTCTTGACATGCATTAACATTTTGTTA 57.244 25.926 0.00 0.00 41.45 2.41
856 1253 9.409312 TCTTGACATGCATTAACATTTTGTTAG 57.591 29.630 0.00 0.00 42.93 2.34
857 1254 9.195411 CTTGACATGCATTAACATTTTGTTAGT 57.805 29.630 0.00 0.00 42.93 2.24
858 1255 9.539825 TTGACATGCATTAACATTTTGTTAGTT 57.460 25.926 0.00 0.00 42.93 2.24
899 1296 7.916914 TTTAGCACAAACTATAAAGAGGACC 57.083 36.000 0.00 0.00 0.00 4.46
900 1297 5.763876 AGCACAAACTATAAAGAGGACCT 57.236 39.130 0.00 0.00 0.00 3.85
901 1298 5.491982 AGCACAAACTATAAAGAGGACCTG 58.508 41.667 0.00 0.00 0.00 4.00
902 1299 5.013183 AGCACAAACTATAAAGAGGACCTGT 59.987 40.000 0.00 0.00 0.00 4.00
903 1300 6.212791 AGCACAAACTATAAAGAGGACCTGTA 59.787 38.462 0.00 0.00 0.00 2.74
904 1301 6.877322 GCACAAACTATAAAGAGGACCTGTAA 59.123 38.462 0.00 0.00 0.00 2.41
905 1302 7.389607 GCACAAACTATAAAGAGGACCTGTAAA 59.610 37.037 0.00 0.00 0.00 2.01
906 1303 9.449719 CACAAACTATAAAGAGGACCTGTAAAT 57.550 33.333 0.00 0.00 0.00 1.40
907 1304 9.449719 ACAAACTATAAAGAGGACCTGTAAATG 57.550 33.333 0.00 0.00 0.00 2.32
908 1305 9.667107 CAAACTATAAAGAGGACCTGTAAATGA 57.333 33.333 0.00 0.00 0.00 2.57
909 1306 9.892130 AAACTATAAAGAGGACCTGTAAATGAG 57.108 33.333 0.00 0.00 0.00 2.90
910 1307 8.024145 ACTATAAAGAGGACCTGTAAATGAGG 57.976 38.462 0.00 0.00 36.57 3.86
911 1308 7.844779 ACTATAAAGAGGACCTGTAAATGAGGA 59.155 37.037 0.00 0.00 34.37 3.71
912 1309 4.828072 AAGAGGACCTGTAAATGAGGAC 57.172 45.455 0.00 0.00 34.37 3.85
913 1310 2.761208 AGAGGACCTGTAAATGAGGACG 59.239 50.000 0.00 0.00 34.37 4.79
914 1311 1.831736 AGGACCTGTAAATGAGGACGG 59.168 52.381 0.00 0.00 34.37 4.79
915 1312 1.829222 GGACCTGTAAATGAGGACGGA 59.171 52.381 0.00 0.00 34.37 4.69
916 1313 2.159085 GGACCTGTAAATGAGGACGGAG 60.159 54.545 0.00 0.00 34.37 4.63
917 1314 1.831736 ACCTGTAAATGAGGACGGAGG 59.168 52.381 0.00 0.00 34.37 4.30
918 1315 1.831736 CCTGTAAATGAGGACGGAGGT 59.168 52.381 0.00 0.00 31.48 3.85
919 1316 3.028850 CCTGTAAATGAGGACGGAGGTA 58.971 50.000 0.00 0.00 31.48 3.08
920 1317 3.068307 CCTGTAAATGAGGACGGAGGTAG 59.932 52.174 0.00 0.00 31.48 3.18
949 1347 3.373130 GCAACCCGGAGTACTAAAATCAC 59.627 47.826 0.73 0.00 0.00 3.06
970 1368 1.838073 ATTGAGCTCCCCGAAACCGT 61.838 55.000 12.15 0.00 0.00 4.83
1016 1414 1.002544 CTTTCACACTCCCCTCACTCC 59.997 57.143 0.00 0.00 0.00 3.85
1017 1415 0.191064 TTCACACTCCCCTCACTCCT 59.809 55.000 0.00 0.00 0.00 3.69
1059 1457 1.864862 CTCCGCACACAAAGCTCTG 59.135 57.895 0.00 0.00 0.00 3.35
1064 1462 1.194098 CGCACACAAAGCTCTGAAGAG 59.806 52.381 0.00 2.81 44.75 2.85
1323 1742 2.659016 CTCCTCGTCCTGCAGCAA 59.341 61.111 8.66 0.00 0.00 3.91
1527 1978 7.546358 CATGTGTCCCATGCTTTTCTTTATAA 58.454 34.615 0.00 0.00 44.21 0.98
1528 1979 7.716799 TGTGTCCCATGCTTTTCTTTATAAT 57.283 32.000 0.00 0.00 0.00 1.28
1529 1980 7.546358 TGTGTCCCATGCTTTTCTTTATAATG 58.454 34.615 0.00 0.00 0.00 1.90
1530 1981 7.178274 TGTGTCCCATGCTTTTCTTTATAATGT 59.822 33.333 0.00 0.00 0.00 2.71
1531 1982 8.682710 GTGTCCCATGCTTTTCTTTATAATGTA 58.317 33.333 0.00 0.00 0.00 2.29
1532 1983 8.682710 TGTCCCATGCTTTTCTTTATAATGTAC 58.317 33.333 0.00 0.00 0.00 2.90
1533 1984 8.903820 GTCCCATGCTTTTCTTTATAATGTACT 58.096 33.333 0.00 0.00 0.00 2.73
1630 2093 3.309954 GGATGCAAATGAGTAACCGAGTC 59.690 47.826 0.00 0.00 0.00 3.36
1709 2192 7.578380 GCAAGAATAAAAATCAGCTCCCTTCTT 60.578 37.037 0.00 0.00 32.31 2.52
1715 2198 0.693049 TCAGCTCCCTTCTTTGTCCC 59.307 55.000 0.00 0.00 0.00 4.46
1716 2199 0.401738 CAGCTCCCTTCTTTGTCCCA 59.598 55.000 0.00 0.00 0.00 4.37
1717 2200 0.695347 AGCTCCCTTCTTTGTCCCAG 59.305 55.000 0.00 0.00 0.00 4.45
1719 2202 1.611936 GCTCCCTTCTTTGTCCCAGAC 60.612 57.143 0.00 0.00 0.00 3.51
1720 2203 1.699634 CTCCCTTCTTTGTCCCAGACA 59.300 52.381 0.00 0.00 41.09 3.41
1730 2213 3.419858 CCCAGACAAGGGCTCCAT 58.580 61.111 0.00 0.00 43.10 3.41
1793 2281 3.716872 AGAAATCCTGTGGGTGGGTATAG 59.283 47.826 0.00 0.00 0.00 1.31
1795 2283 2.471815 TCCTGTGGGTGGGTATAGAG 57.528 55.000 0.00 0.00 0.00 2.43
1805 2293 3.325135 GGTGGGTATAGAGACTGATTGGG 59.675 52.174 0.00 0.00 0.00 4.12
1846 2334 8.788325 AAACTAAGTTGTTTCTAGACTGTTGT 57.212 30.769 0.00 0.00 35.50 3.32
1847 2335 8.788325 AACTAAGTTGTTTCTAGACTGTTGTT 57.212 30.769 0.00 0.00 0.00 2.83
1848 2336 8.421673 ACTAAGTTGTTTCTAGACTGTTGTTC 57.578 34.615 0.00 0.00 0.00 3.18
1849 2337 6.679327 AAGTTGTTTCTAGACTGTTGTTCC 57.321 37.500 0.00 0.00 0.00 3.62
1850 2338 5.741011 AGTTGTTTCTAGACTGTTGTTCCA 58.259 37.500 0.00 0.00 0.00 3.53
1851 2339 6.177610 AGTTGTTTCTAGACTGTTGTTCCAA 58.822 36.000 0.00 0.00 0.00 3.53
1852 2340 6.828785 AGTTGTTTCTAGACTGTTGTTCCAAT 59.171 34.615 0.00 0.00 0.00 3.16
1853 2341 6.618287 TGTTTCTAGACTGTTGTTCCAATG 57.382 37.500 0.00 0.00 0.00 2.82
1854 2342 5.530915 TGTTTCTAGACTGTTGTTCCAATGG 59.469 40.000 0.00 0.00 0.00 3.16
1856 2344 5.762179 TCTAGACTGTTGTTCCAATGGAT 57.238 39.130 1.39 0.00 0.00 3.41
1857 2345 6.867519 TCTAGACTGTTGTTCCAATGGATA 57.132 37.500 1.39 0.00 0.00 2.59
1858 2346 6.640518 TCTAGACTGTTGTTCCAATGGATAC 58.359 40.000 1.39 5.28 0.00 2.24
1897 2499 5.199024 TGTGCTGTTCAAATGCAACTTAT 57.801 34.783 0.00 0.00 38.50 1.73
1898 2500 5.599732 TGTGCTGTTCAAATGCAACTTATT 58.400 33.333 0.00 0.00 38.50 1.40
1899 2501 6.743110 TGTGCTGTTCAAATGCAACTTATTA 58.257 32.000 0.00 0.00 38.50 0.98
1900 2502 6.640499 TGTGCTGTTCAAATGCAACTTATTAC 59.360 34.615 0.00 0.00 38.50 1.89
1901 2503 6.863126 GTGCTGTTCAAATGCAACTTATTACT 59.137 34.615 0.00 0.00 38.50 2.24
1902 2504 8.020819 GTGCTGTTCAAATGCAACTTATTACTA 58.979 33.333 0.00 0.00 38.50 1.82
1910 2512 8.911662 CAAATGCAACTTATTACTACCAAACAC 58.088 33.333 0.00 0.00 0.00 3.32
1933 2535 8.562892 ACACTGAGATGAAGAAAACAAATACAG 58.437 33.333 0.00 0.00 0.00 2.74
1937 2539 8.567948 TGAGATGAAGAAAACAAATACAGTTCC 58.432 33.333 0.00 0.00 0.00 3.62
1941 2543 5.432885 AGAAAACAAATACAGTTCCCACG 57.567 39.130 0.00 0.00 0.00 4.94
1955 2557 2.328989 CACGCACTGCACTTGTGG 59.671 61.111 6.69 0.50 36.08 4.17
1958 2560 0.034756 ACGCACTGCACTTGTGGATA 59.965 50.000 6.69 0.00 36.08 2.59
1979 2584 1.393539 AGCGCTAATTGTACTGTTGCG 59.606 47.619 8.99 12.57 43.91 4.85
1990 2595 2.624316 ACTGTTGCGCAAGATGATTG 57.376 45.000 25.78 12.51 43.02 2.67
1994 2599 0.457166 TTGCGCAAGATGATTGCAGC 60.457 50.000 21.02 14.94 45.14 5.25
2015 2620 2.798283 CTGCATTTGAACAGTTGCAAGG 59.202 45.455 0.00 0.00 43.83 3.61
2016 2621 2.429971 TGCATTTGAACAGTTGCAAGGA 59.570 40.909 0.00 0.00 41.76 3.36
2025 2630 2.945668 ACAGTTGCAAGGAGAACAGAAC 59.054 45.455 0.00 0.00 0.00 3.01
2040 2645 4.766404 ACAGAACCAAAAGGATAAAGCG 57.234 40.909 0.00 0.00 0.00 4.68
2074 2679 3.528532 TGTTGATGTGCAGATCAGCTAG 58.471 45.455 31.12 0.00 35.29 3.42
2082 2687 2.561858 TGCAGATCAGCTAGGCAGATAG 59.438 50.000 11.68 0.00 35.03 2.08
2086 2692 4.156556 CAGATCAGCTAGGCAGATAGTCTC 59.843 50.000 0.00 0.00 35.03 3.36
2103 2709 5.499004 AGTCTCTGTAAAGGTGCCAAATA 57.501 39.130 0.00 0.00 0.00 1.40
2105 2711 5.705905 AGTCTCTGTAAAGGTGCCAAATAAC 59.294 40.000 0.00 0.00 0.00 1.89
2107 2713 6.151144 GTCTCTGTAAAGGTGCCAAATAACAT 59.849 38.462 0.00 0.00 0.00 2.71
2108 2714 6.719370 TCTCTGTAAAGGTGCCAAATAACATT 59.281 34.615 0.00 0.00 0.00 2.71
2109 2715 7.885922 TCTCTGTAAAGGTGCCAAATAACATTA 59.114 33.333 0.00 0.00 0.00 1.90
2111 2717 9.030452 TCTGTAAAGGTGCCAAATAACATTATT 57.970 29.630 0.00 0.00 34.98 1.40
2112 2718 9.651913 CTGTAAAGGTGCCAAATAACATTATTT 57.348 29.630 4.15 4.15 42.40 1.40
2148 2755 8.948631 TTACTATCATTGTCTGGATTCAAGAC 57.051 34.615 13.45 13.45 0.00 3.01
2159 2766 6.253727 GTCTGGATTCAAGACTGTTACATACG 59.746 42.308 13.12 0.00 0.00 3.06
2166 2773 1.997606 GACTGTTACATACGGGCACAC 59.002 52.381 0.00 0.00 41.21 3.82
2191 2799 3.932089 GCCAACAACTTCATTTTGTGTGT 59.068 39.130 0.00 0.00 37.26 3.72
2195 2803 7.452231 CCAACAACTTCATTTTGTGTGTAAAC 58.548 34.615 0.00 0.00 37.26 2.01
2201 2809 7.882179 ACTTCATTTTGTGTGTAAACCTATCC 58.118 34.615 0.00 0.00 0.00 2.59
2215 2823 4.929146 ACCTATCCTGTATAATTGGCCC 57.071 45.455 0.00 0.00 0.00 5.80
2270 2878 1.488527 CAAGGACCGCGCTATAAGAC 58.511 55.000 5.56 0.00 0.00 3.01
2276 2884 3.489738 GGACCGCGCTATAAGACTGTTTA 60.490 47.826 5.56 0.00 0.00 2.01
2279 2887 4.142315 ACCGCGCTATAAGACTGTTTAGAA 60.142 41.667 5.56 0.00 0.00 2.10
2294 2902 6.037786 TGTTTAGAATGTAGGGTCAGACTG 57.962 41.667 0.00 0.00 0.00 3.51
2325 2933 5.011125 TGTTAGAATCCAGTAGCCTATCTGC 59.989 44.000 0.00 0.00 0.00 4.26
2347 2955 1.793258 CCGAAGGCAGCATATCAGAG 58.207 55.000 0.00 0.00 46.14 3.35
2473 3081 1.291877 CTGTCAGGTAGTTGTGCCGC 61.292 60.000 0.00 0.00 32.57 6.53
2559 3167 8.562892 CCAATAAAATACCTGTAGAGCAATCAG 58.437 37.037 0.00 0.00 0.00 2.90
2575 3183 7.550906 AGAGCAATCAGGAAAGTATTAGTTCAC 59.449 37.037 0.00 0.00 0.00 3.18
2603 3211 9.788889 AAACTAACAAGGTGTACTAGCTAAAAT 57.211 29.630 0.00 0.00 35.72 1.82
2609 3217 7.334421 ACAAGGTGTACTAGCTAAAATCATGTG 59.666 37.037 0.00 0.00 35.72 3.21
2610 3218 5.817816 AGGTGTACTAGCTAAAATCATGTGC 59.182 40.000 0.00 0.00 34.81 4.57
2611 3219 5.817816 GGTGTACTAGCTAAAATCATGTGCT 59.182 40.000 0.00 0.00 37.72 4.40
2612 3220 6.018669 GGTGTACTAGCTAAAATCATGTGCTC 60.019 42.308 0.00 0.00 35.47 4.26
2613 3221 6.018669 GTGTACTAGCTAAAATCATGTGCTCC 60.019 42.308 0.00 0.00 35.47 4.70
2614 3222 4.455606 ACTAGCTAAAATCATGTGCTCCC 58.544 43.478 0.00 0.00 35.47 4.30
2615 3223 3.659183 AGCTAAAATCATGTGCTCCCT 57.341 42.857 0.00 0.00 0.00 4.20
2616 3224 3.549794 AGCTAAAATCATGTGCTCCCTC 58.450 45.455 0.00 0.00 0.00 4.30
2617 3225 3.054139 AGCTAAAATCATGTGCTCCCTCA 60.054 43.478 0.00 0.00 0.00 3.86
2618 3226 3.696051 GCTAAAATCATGTGCTCCCTCAA 59.304 43.478 0.00 0.00 0.00 3.02
2619 3227 4.340381 GCTAAAATCATGTGCTCCCTCAAT 59.660 41.667 0.00 0.00 0.00 2.57
2620 3228 5.163478 GCTAAAATCATGTGCTCCCTCAATT 60.163 40.000 0.00 0.00 0.00 2.32
2621 3229 5.750352 AAAATCATGTGCTCCCTCAATTT 57.250 34.783 0.00 0.00 0.00 1.82
2622 3230 4.730949 AATCATGTGCTCCCTCAATTTG 57.269 40.909 0.00 0.00 0.00 2.32
2623 3231 3.438216 TCATGTGCTCCCTCAATTTGA 57.562 42.857 0.00 0.00 0.00 2.69
2624 3232 3.765381 TCATGTGCTCCCTCAATTTGAA 58.235 40.909 0.01 0.00 0.00 2.69
2625 3233 3.507233 TCATGTGCTCCCTCAATTTGAAC 59.493 43.478 0.01 0.00 0.00 3.18
2626 3234 3.228188 TGTGCTCCCTCAATTTGAACT 57.772 42.857 0.01 0.00 0.00 3.01
2627 3235 2.886523 TGTGCTCCCTCAATTTGAACTG 59.113 45.455 0.01 0.00 0.00 3.16
2628 3236 1.888512 TGCTCCCTCAATTTGAACTGC 59.111 47.619 0.01 4.02 0.00 4.40
2629 3237 1.203287 GCTCCCTCAATTTGAACTGCC 59.797 52.381 0.01 0.00 0.00 4.85
2630 3238 2.517959 CTCCCTCAATTTGAACTGCCA 58.482 47.619 0.01 0.00 0.00 4.92
2631 3239 2.892852 CTCCCTCAATTTGAACTGCCAA 59.107 45.455 0.01 0.00 0.00 4.52
2632 3240 3.303938 TCCCTCAATTTGAACTGCCAAA 58.696 40.909 0.01 0.00 39.93 3.28
2633 3241 3.708631 TCCCTCAATTTGAACTGCCAAAA 59.291 39.130 0.01 0.00 39.20 2.44
2634 3242 4.347583 TCCCTCAATTTGAACTGCCAAAAT 59.652 37.500 0.01 0.00 39.20 1.82
2635 3243 4.453136 CCCTCAATTTGAACTGCCAAAATG 59.547 41.667 0.01 0.00 39.20 2.32
2636 3244 5.058490 CCTCAATTTGAACTGCCAAAATGT 58.942 37.500 0.01 0.00 39.20 2.71
2637 3245 5.178067 CCTCAATTTGAACTGCCAAAATGTC 59.822 40.000 0.01 0.00 39.20 3.06
2638 3246 5.668471 TCAATTTGAACTGCCAAAATGTCA 58.332 33.333 0.00 0.00 39.20 3.58
2639 3247 6.289834 TCAATTTGAACTGCCAAAATGTCAT 58.710 32.000 0.00 0.00 39.20 3.06
2640 3248 7.440198 TCAATTTGAACTGCCAAAATGTCATA 58.560 30.769 0.00 0.00 39.20 2.15
2641 3249 8.095792 TCAATTTGAACTGCCAAAATGTCATAT 58.904 29.630 0.00 0.00 39.20 1.78
2642 3250 9.368674 CAATTTGAACTGCCAAAATGTCATATA 57.631 29.630 0.00 0.00 39.20 0.86
2645 3253 9.941325 TTTGAACTGCCAAAATGTCATATATTT 57.059 25.926 0.00 0.00 33.56 1.40
2648 3256 9.683069 GAACTGCCAAAATGTCATATATTTAGG 57.317 33.333 0.00 0.00 0.00 2.69
2649 3257 8.995027 ACTGCCAAAATGTCATATATTTAGGA 57.005 30.769 0.00 0.00 0.00 2.94
2650 3258 9.420118 ACTGCCAAAATGTCATATATTTAGGAA 57.580 29.630 0.00 0.00 0.00 3.36
2651 3259 9.683069 CTGCCAAAATGTCATATATTTAGGAAC 57.317 33.333 0.00 0.00 0.00 3.62
2652 3260 9.194972 TGCCAAAATGTCATATATTTAGGAACA 57.805 29.630 0.00 0.00 0.00 3.18
2653 3261 9.683069 GCCAAAATGTCATATATTTAGGAACAG 57.317 33.333 0.00 0.00 0.00 3.16
2657 3265 9.799106 AAATGTCATATATTTAGGAACAGAGGG 57.201 33.333 0.00 0.00 0.00 4.30
2658 3266 8.742125 ATGTCATATATTTAGGAACAGAGGGA 57.258 34.615 0.00 0.00 0.00 4.20
2659 3267 8.195165 TGTCATATATTTAGGAACAGAGGGAG 57.805 38.462 0.00 0.00 0.00 4.30
2660 3268 7.789831 TGTCATATATTTAGGAACAGAGGGAGT 59.210 37.037 0.00 0.00 0.00 3.85
2661 3269 9.310449 GTCATATATTTAGGAACAGAGGGAGTA 57.690 37.037 0.00 0.00 0.00 2.59
2662 3270 9.892444 TCATATATTTAGGAACAGAGGGAGTAA 57.108 33.333 0.00 0.00 0.00 2.24
2664 3272 9.900112 ATATATTTAGGAACAGAGGGAGTAAGT 57.100 33.333 0.00 0.00 0.00 2.24
2665 3273 5.740290 TTTAGGAACAGAGGGAGTAAGTG 57.260 43.478 0.00 0.00 0.00 3.16
2666 3274 3.261818 AGGAACAGAGGGAGTAAGTGT 57.738 47.619 0.00 0.00 0.00 3.55
2667 3275 3.588569 AGGAACAGAGGGAGTAAGTGTT 58.411 45.455 0.00 0.00 34.08 3.32
2668 3276 4.748701 AGGAACAGAGGGAGTAAGTGTTA 58.251 43.478 0.00 0.00 31.57 2.41
2669 3277 5.152934 AGGAACAGAGGGAGTAAGTGTTAA 58.847 41.667 0.00 0.00 31.57 2.01
2670 3278 5.605488 AGGAACAGAGGGAGTAAGTGTTAAA 59.395 40.000 0.00 0.00 31.57 1.52
2671 3279 5.932883 GGAACAGAGGGAGTAAGTGTTAAAG 59.067 44.000 0.00 0.00 31.57 1.85
2672 3280 6.239515 GGAACAGAGGGAGTAAGTGTTAAAGA 60.240 42.308 0.00 0.00 31.57 2.52
2673 3281 6.347859 ACAGAGGGAGTAAGTGTTAAAGAG 57.652 41.667 0.00 0.00 0.00 2.85
2674 3282 5.839606 ACAGAGGGAGTAAGTGTTAAAGAGT 59.160 40.000 0.00 0.00 0.00 3.24
2675 3283 6.159988 CAGAGGGAGTAAGTGTTAAAGAGTG 58.840 44.000 0.00 0.00 0.00 3.51
2676 3284 5.839606 AGAGGGAGTAAGTGTTAAAGAGTGT 59.160 40.000 0.00 0.00 0.00 3.55
2677 3285 7.008941 AGAGGGAGTAAGTGTTAAAGAGTGTA 58.991 38.462 0.00 0.00 0.00 2.90
2678 3286 7.674772 AGAGGGAGTAAGTGTTAAAGAGTGTAT 59.325 37.037 0.00 0.00 0.00 2.29
2679 3287 8.890410 AGGGAGTAAGTGTTAAAGAGTGTATA 57.110 34.615 0.00 0.00 0.00 1.47
2680 3288 8.747471 AGGGAGTAAGTGTTAAAGAGTGTATAC 58.253 37.037 0.00 0.00 0.00 1.47
2681 3289 7.978414 GGGAGTAAGTGTTAAAGAGTGTATACC 59.022 40.741 0.00 0.00 0.00 2.73
2682 3290 7.978414 GGAGTAAGTGTTAAAGAGTGTATACCC 59.022 40.741 0.00 0.00 0.00 3.69
2683 3291 8.426569 AGTAAGTGTTAAAGAGTGTATACCCA 57.573 34.615 0.00 0.00 0.00 4.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 8.593945 TTGGTCAAGCTAATTAATTTGGAGAT 57.406 30.769 5.91 0.00 0.00 2.75
119 289 9.612620 CTTTGGTAAATAAAAGACTTGCAGTAG 57.387 33.333 0.00 0.00 35.79 2.57
136 306 6.823497 AGCTTGTACACTAGTCTTTGGTAAA 58.177 36.000 0.00 0.00 0.00 2.01
140 310 5.297547 TGAAGCTTGTACACTAGTCTTTGG 58.702 41.667 2.10 0.00 0.00 3.28
144 314 5.105554 CCTGATGAAGCTTGTACACTAGTCT 60.106 44.000 2.10 0.00 0.00 3.24
145 315 5.105752 CCTGATGAAGCTTGTACACTAGTC 58.894 45.833 2.10 0.00 0.00 2.59
146 316 4.621747 GCCTGATGAAGCTTGTACACTAGT 60.622 45.833 2.10 0.00 0.00 2.57
156 326 0.033405 ATGGCTGCCTGATGAAGCTT 60.033 50.000 21.03 0.00 37.12 3.74
158 328 1.734137 CATGGCTGCCTGATGAAGC 59.266 57.895 21.03 0.00 36.17 3.86
162 332 0.469331 ATTCCCATGGCTGCCTGATG 60.469 55.000 21.03 15.44 0.00 3.07
163 333 0.469331 CATTCCCATGGCTGCCTGAT 60.469 55.000 21.03 2.54 0.00 2.90
165 335 2.131709 CCATTCCCATGGCTGCCTG 61.132 63.158 21.03 14.71 43.95 4.85
178 348 2.117156 ACAGCTCGCCATGCCATTC 61.117 57.895 0.00 0.00 0.00 2.67
181 351 3.963687 CTCACAGCTCGCCATGCCA 62.964 63.158 0.00 0.00 0.00 4.92
182 352 3.200593 CTCACAGCTCGCCATGCC 61.201 66.667 0.00 0.00 0.00 4.40
183 353 2.435586 ACTCACAGCTCGCCATGC 60.436 61.111 0.00 0.00 0.00 4.06
184 354 0.108662 TACACTCACAGCTCGCCATG 60.109 55.000 0.00 0.00 0.00 3.66
185 355 0.608130 TTACACTCACAGCTCGCCAT 59.392 50.000 0.00 0.00 0.00 4.40
186 356 0.391228 TTTACACTCACAGCTCGCCA 59.609 50.000 0.00 0.00 0.00 5.69
187 357 1.071605 CTTTACACTCACAGCTCGCC 58.928 55.000 0.00 0.00 0.00 5.54
188 358 1.457303 CACTTTACACTCACAGCTCGC 59.543 52.381 0.00 0.00 0.00 5.03
189 359 2.726760 GTCACTTTACACTCACAGCTCG 59.273 50.000 0.00 0.00 0.00 5.03
190 360 2.726760 CGTCACTTTACACTCACAGCTC 59.273 50.000 0.00 0.00 0.00 4.09
191 361 2.100916 ACGTCACTTTACACTCACAGCT 59.899 45.455 0.00 0.00 0.00 4.24
192 362 2.470821 ACGTCACTTTACACTCACAGC 58.529 47.619 0.00 0.00 0.00 4.40
251 421 4.320202 CCAGTTGGGTAAGAACACATTTCG 60.320 45.833 0.00 0.00 39.27 3.46
358 528 3.014110 AGAGGGAGAGAGGGATGGTAAAA 59.986 47.826 0.00 0.00 0.00 1.52
359 529 2.592512 AGAGGGAGAGAGGGATGGTAAA 59.407 50.000 0.00 0.00 0.00 2.01
360 530 2.178106 GAGAGGGAGAGAGGGATGGTAA 59.822 54.545 0.00 0.00 0.00 2.85
361 531 1.783979 GAGAGGGAGAGAGGGATGGTA 59.216 57.143 0.00 0.00 0.00 3.25
362 532 0.560688 GAGAGGGAGAGAGGGATGGT 59.439 60.000 0.00 0.00 0.00 3.55
365 535 2.228978 AGAGAGAGGGAGAGAGGGAT 57.771 55.000 0.00 0.00 0.00 3.85
368 538 4.166144 AGTTTCTAGAGAGAGGGAGAGAGG 59.834 50.000 0.00 0.00 31.77 3.69
376 546 1.202359 GCCGCAGTTTCTAGAGAGAGG 60.202 57.143 0.00 0.00 31.77 3.69
452 834 2.373540 TCGATGACGACCCGATTTTT 57.626 45.000 0.00 0.00 43.81 1.94
493 875 7.044706 GCAAGTTAATTAATCTCATGCACGAAC 60.045 37.037 0.31 0.00 0.00 3.95
496 878 6.257423 TGCAAGTTAATTAATCTCATGCACG 58.743 36.000 11.10 0.00 36.46 5.34
499 884 8.861033 TCATTGCAAGTTAATTAATCTCATGC 57.139 30.769 4.94 4.65 0.00 4.06
504 889 9.603921 CCCAAATCATTGCAAGTTAATTAATCT 57.396 29.630 4.94 0.00 35.10 2.40
537 922 1.069227 GTGGAGCACATTCAAACGACC 60.069 52.381 0.00 0.00 34.08 4.79
541 926 3.066621 TGAGTTGTGGAGCACATTCAAAC 59.933 43.478 0.00 0.00 44.16 2.93
542 927 3.286353 TGAGTTGTGGAGCACATTCAAA 58.714 40.909 0.00 0.00 44.16 2.69
560 945 3.894759 ACAAATGGTGATGAGGGATGAG 58.105 45.455 0.00 0.00 0.00 2.90
578 970 3.639008 CGCACTGCTCACGCACAA 61.639 61.111 0.00 0.00 42.25 3.33
684 1081 1.923356 AAACCCGAACGGAGGTAGTA 58.077 50.000 15.07 0.00 34.45 1.82
685 1082 1.923356 TAAACCCGAACGGAGGTAGT 58.077 50.000 15.07 0.64 34.45 2.73
686 1083 3.192466 CAATAAACCCGAACGGAGGTAG 58.808 50.000 15.07 0.00 34.45 3.18
687 1084 2.093553 CCAATAAACCCGAACGGAGGTA 60.094 50.000 15.07 3.88 34.45 3.08
688 1085 1.339342 CCAATAAACCCGAACGGAGGT 60.339 52.381 15.07 2.12 38.27 3.85
689 1086 1.339342 ACCAATAAACCCGAACGGAGG 60.339 52.381 15.07 1.47 37.50 4.30
690 1087 2.004733 GACCAATAAACCCGAACGGAG 58.995 52.381 15.07 7.41 37.50 4.63
691 1088 1.338960 GGACCAATAAACCCGAACGGA 60.339 52.381 15.07 0.00 37.50 4.69
692 1089 1.089112 GGACCAATAAACCCGAACGG 58.911 55.000 6.25 6.25 37.81 4.44
693 1090 2.004733 GAGGACCAATAAACCCGAACG 58.995 52.381 0.00 0.00 0.00 3.95
694 1091 3.062122 TGAGGACCAATAAACCCGAAC 57.938 47.619 0.00 0.00 0.00 3.95
695 1092 4.310022 AATGAGGACCAATAAACCCGAA 57.690 40.909 0.00 0.00 0.00 4.30
696 1093 5.640158 ATAATGAGGACCAATAAACCCGA 57.360 39.130 0.00 0.00 0.00 5.14
697 1094 7.996098 AATATAATGAGGACCAATAAACCCG 57.004 36.000 0.00 0.00 0.00 5.28
698 1095 8.512138 CGAAATATAATGAGGACCAATAAACCC 58.488 37.037 0.00 0.00 0.00 4.11
699 1096 9.063615 ACGAAATATAATGAGGACCAATAAACC 57.936 33.333 0.00 0.00 0.00 3.27
700 1097 9.878599 CACGAAATATAATGAGGACCAATAAAC 57.121 33.333 0.00 0.00 0.00 2.01
701 1098 8.564574 GCACGAAATATAATGAGGACCAATAAA 58.435 33.333 0.00 0.00 0.00 1.40
702 1099 7.174253 GGCACGAAATATAATGAGGACCAATAA 59.826 37.037 0.00 0.00 0.00 1.40
703 1100 6.653320 GGCACGAAATATAATGAGGACCAATA 59.347 38.462 0.00 0.00 0.00 1.90
704 1101 5.473504 GGCACGAAATATAATGAGGACCAAT 59.526 40.000 0.00 0.00 0.00 3.16
705 1102 4.819630 GGCACGAAATATAATGAGGACCAA 59.180 41.667 0.00 0.00 0.00 3.67
706 1103 4.141597 TGGCACGAAATATAATGAGGACCA 60.142 41.667 0.00 0.00 0.00 4.02
707 1104 4.385825 TGGCACGAAATATAATGAGGACC 58.614 43.478 0.00 0.00 0.00 4.46
708 1105 6.371809 TTTGGCACGAAATATAATGAGGAC 57.628 37.500 0.00 0.00 0.00 3.85
709 1106 7.581213 AATTTGGCACGAAATATAATGAGGA 57.419 32.000 0.00 0.00 0.00 3.71
710 1107 8.542132 CAAAATTTGGCACGAAATATAATGAGG 58.458 33.333 0.00 0.00 0.00 3.86
711 1108 9.299963 TCAAAATTTGGCACGAAATATAATGAG 57.700 29.630 5.83 0.00 0.00 2.90
712 1109 9.814899 ATCAAAATTTGGCACGAAATATAATGA 57.185 25.926 5.83 0.00 0.00 2.57
714 1111 9.814899 TGATCAAAATTTGGCACGAAATATAAT 57.185 25.926 5.83 0.00 0.00 1.28
715 1112 9.814899 ATGATCAAAATTTGGCACGAAATATAA 57.185 25.926 5.83 0.00 0.00 0.98
717 1114 9.467258 CTATGATCAAAATTTGGCACGAAATAT 57.533 29.630 5.83 0.00 0.00 1.28
718 1115 8.681806 TCTATGATCAAAATTTGGCACGAAATA 58.318 29.630 5.83 0.00 0.00 1.40
719 1116 7.546358 TCTATGATCAAAATTTGGCACGAAAT 58.454 30.769 5.83 0.00 0.00 2.17
720 1117 6.918626 TCTATGATCAAAATTTGGCACGAAA 58.081 32.000 5.83 0.00 0.00 3.46
721 1118 6.507958 TCTATGATCAAAATTTGGCACGAA 57.492 33.333 5.83 0.00 0.00 3.85
722 1119 6.698008 ATCTATGATCAAAATTTGGCACGA 57.302 33.333 5.83 6.02 0.00 4.35
723 1120 8.854979 TTAATCTATGATCAAAATTTGGCACG 57.145 30.769 5.83 1.46 0.00 5.34
752 1149 9.800433 TTTGATGATATGCGTGAATATTTTGTT 57.200 25.926 0.00 0.00 0.00 2.83
753 1150 9.236691 GTTTGATGATATGCGTGAATATTTTGT 57.763 29.630 0.00 0.00 0.00 2.83
754 1151 9.235537 TGTTTGATGATATGCGTGAATATTTTG 57.764 29.630 0.00 0.00 0.00 2.44
755 1152 9.970395 ATGTTTGATGATATGCGTGAATATTTT 57.030 25.926 0.00 0.00 0.00 1.82
756 1153 9.970395 AATGTTTGATGATATGCGTGAATATTT 57.030 25.926 0.00 0.00 0.00 1.40
814 1211 9.763465 GCATGTCAAGAAAAATTATTTCATTGG 57.237 29.630 12.51 3.49 0.00 3.16
826 1223 9.932699 CAAAATGTTAATGCATGTCAAGAAAAA 57.067 25.926 0.00 0.00 0.00 1.94
827 1224 9.107177 ACAAAATGTTAATGCATGTCAAGAAAA 57.893 25.926 0.00 0.00 0.00 2.29
828 1225 8.659925 ACAAAATGTTAATGCATGTCAAGAAA 57.340 26.923 0.00 0.00 0.00 2.52
829 1226 8.659925 AACAAAATGTTAATGCATGTCAAGAA 57.340 26.923 0.00 0.00 39.09 2.52
830 1227 9.409312 CTAACAAAATGTTAATGCATGTCAAGA 57.591 29.630 0.00 0.00 41.70 3.02
831 1228 9.195411 ACTAACAAAATGTTAATGCATGTCAAG 57.805 29.630 0.00 0.00 41.70 3.02
832 1229 9.539825 AACTAACAAAATGTTAATGCATGTCAA 57.460 25.926 0.00 0.00 41.70 3.18
873 1270 8.957466 GGTCCTCTTTATAGTTTGTGCTAAATT 58.043 33.333 0.00 0.00 0.00 1.82
874 1271 8.329502 AGGTCCTCTTTATAGTTTGTGCTAAAT 58.670 33.333 0.00 0.00 0.00 1.40
875 1272 7.606456 CAGGTCCTCTTTATAGTTTGTGCTAAA 59.394 37.037 0.00 0.00 0.00 1.85
876 1273 7.103641 CAGGTCCTCTTTATAGTTTGTGCTAA 58.896 38.462 0.00 0.00 0.00 3.09
877 1274 6.212791 ACAGGTCCTCTTTATAGTTTGTGCTA 59.787 38.462 0.00 0.00 0.00 3.49
878 1275 5.013183 ACAGGTCCTCTTTATAGTTTGTGCT 59.987 40.000 0.00 0.00 0.00 4.40
879 1276 5.246307 ACAGGTCCTCTTTATAGTTTGTGC 58.754 41.667 0.00 0.00 0.00 4.57
880 1277 8.842358 TTTACAGGTCCTCTTTATAGTTTGTG 57.158 34.615 0.00 0.00 0.00 3.33
881 1278 9.449719 CATTTACAGGTCCTCTTTATAGTTTGT 57.550 33.333 0.00 0.00 0.00 2.83
882 1279 9.667107 TCATTTACAGGTCCTCTTTATAGTTTG 57.333 33.333 0.00 0.00 0.00 2.93
883 1280 9.892130 CTCATTTACAGGTCCTCTTTATAGTTT 57.108 33.333 0.00 0.00 0.00 2.66
884 1281 8.487028 CCTCATTTACAGGTCCTCTTTATAGTT 58.513 37.037 0.00 0.00 0.00 2.24
885 1282 7.844779 TCCTCATTTACAGGTCCTCTTTATAGT 59.155 37.037 0.00 0.00 32.20 2.12
886 1283 8.145122 GTCCTCATTTACAGGTCCTCTTTATAG 58.855 40.741 0.00 0.00 32.20 1.31
887 1284 7.201884 CGTCCTCATTTACAGGTCCTCTTTATA 60.202 40.741 0.00 0.00 32.20 0.98
888 1285 6.407074 CGTCCTCATTTACAGGTCCTCTTTAT 60.407 42.308 0.00 0.00 32.20 1.40
889 1286 5.105473 CGTCCTCATTTACAGGTCCTCTTTA 60.105 44.000 0.00 0.00 32.20 1.85
890 1287 4.322801 CGTCCTCATTTACAGGTCCTCTTT 60.323 45.833 0.00 0.00 32.20 2.52
891 1288 3.195825 CGTCCTCATTTACAGGTCCTCTT 59.804 47.826 0.00 0.00 32.20 2.85
892 1289 2.761208 CGTCCTCATTTACAGGTCCTCT 59.239 50.000 0.00 0.00 32.20 3.69
893 1290 2.159085 CCGTCCTCATTTACAGGTCCTC 60.159 54.545 0.00 0.00 32.20 3.71
894 1291 1.831736 CCGTCCTCATTTACAGGTCCT 59.168 52.381 0.00 0.00 32.20 3.85
895 1292 1.829222 TCCGTCCTCATTTACAGGTCC 59.171 52.381 0.00 0.00 32.20 4.46
896 1293 2.159085 CCTCCGTCCTCATTTACAGGTC 60.159 54.545 0.00 0.00 32.20 3.85
897 1294 1.831736 CCTCCGTCCTCATTTACAGGT 59.168 52.381 0.00 0.00 32.20 4.00
898 1295 1.831736 ACCTCCGTCCTCATTTACAGG 59.168 52.381 0.00 0.00 0.00 4.00
899 1296 3.700038 ACTACCTCCGTCCTCATTTACAG 59.300 47.826 0.00 0.00 0.00 2.74
900 1297 3.705051 ACTACCTCCGTCCTCATTTACA 58.295 45.455 0.00 0.00 0.00 2.41
901 1298 5.841957 TTACTACCTCCGTCCTCATTTAC 57.158 43.478 0.00 0.00 0.00 2.01
902 1299 5.716228 TGTTTACTACCTCCGTCCTCATTTA 59.284 40.000 0.00 0.00 0.00 1.40
903 1300 4.529377 TGTTTACTACCTCCGTCCTCATTT 59.471 41.667 0.00 0.00 0.00 2.32
904 1301 4.091549 TGTTTACTACCTCCGTCCTCATT 58.908 43.478 0.00 0.00 0.00 2.57
905 1302 3.700038 CTGTTTACTACCTCCGTCCTCAT 59.300 47.826 0.00 0.00 0.00 2.90
906 1303 3.087031 CTGTTTACTACCTCCGTCCTCA 58.913 50.000 0.00 0.00 0.00 3.86
907 1304 2.159268 GCTGTTTACTACCTCCGTCCTC 60.159 54.545 0.00 0.00 0.00 3.71
908 1305 1.823610 GCTGTTTACTACCTCCGTCCT 59.176 52.381 0.00 0.00 0.00 3.85
909 1306 1.547372 TGCTGTTTACTACCTCCGTCC 59.453 52.381 0.00 0.00 0.00 4.79
910 1307 2.991866 GTTGCTGTTTACTACCTCCGTC 59.008 50.000 0.00 0.00 0.00 4.79
911 1308 2.289257 GGTTGCTGTTTACTACCTCCGT 60.289 50.000 0.00 0.00 0.00 4.69
912 1309 2.344025 GGTTGCTGTTTACTACCTCCG 58.656 52.381 0.00 0.00 0.00 4.63
913 1310 2.708051 GGGTTGCTGTTTACTACCTCC 58.292 52.381 0.00 0.00 0.00 4.30
914 1311 2.344025 CGGGTTGCTGTTTACTACCTC 58.656 52.381 0.00 0.00 0.00 3.85
915 1312 1.002773 CCGGGTTGCTGTTTACTACCT 59.997 52.381 0.00 0.00 0.00 3.08
916 1313 1.002315 TCCGGGTTGCTGTTTACTACC 59.998 52.381 0.00 0.00 0.00 3.18
917 1314 2.289257 ACTCCGGGTTGCTGTTTACTAC 60.289 50.000 0.00 0.00 0.00 2.73
918 1315 1.972795 ACTCCGGGTTGCTGTTTACTA 59.027 47.619 0.00 0.00 0.00 1.82
919 1316 0.763035 ACTCCGGGTTGCTGTTTACT 59.237 50.000 0.00 0.00 0.00 2.24
920 1317 2.071540 GTACTCCGGGTTGCTGTTTAC 58.928 52.381 0.00 0.00 0.00 2.01
949 1347 0.811281 GGTTTCGGGGAGCTCAATTG 59.189 55.000 17.19 0.00 0.00 2.32
1016 1414 5.476614 TGAGTGAGTGAGTGATGAATGAAG 58.523 41.667 0.00 0.00 0.00 3.02
1017 1415 5.473066 TGAGTGAGTGAGTGATGAATGAA 57.527 39.130 0.00 0.00 0.00 2.57
1059 1457 2.159490 CGGACTTCTTCTCGTCCTCTTC 60.159 54.545 6.85 0.00 45.88 2.87
1064 1462 1.268133 CGATCGGACTTCTTCTCGTCC 60.268 57.143 7.38 0.00 44.88 4.79
1305 1724 2.947532 TTGCTGCAGGACGAGGAGG 61.948 63.158 17.12 0.00 0.00 4.30
1492 1943 0.729116 GGGACACATGAATGCTCGTG 59.271 55.000 0.00 0.00 43.24 4.35
1527 1978 7.270047 ACACAAACACAAGTAGTACAGTACAT 58.730 34.615 13.37 1.27 0.00 2.29
1528 1979 6.632909 ACACAAACACAAGTAGTACAGTACA 58.367 36.000 13.37 0.00 0.00 2.90
1529 1980 8.807667 ATACACAAACACAAGTAGTACAGTAC 57.192 34.615 2.05 2.05 0.00 2.73
1530 1981 9.820725 AAATACACAAACACAAGTAGTACAGTA 57.179 29.630 2.52 0.00 0.00 2.74
1531 1982 8.609176 CAAATACACAAACACAAGTAGTACAGT 58.391 33.333 2.52 0.00 0.00 3.55
1532 1983 8.609176 ACAAATACACAAACACAAGTAGTACAG 58.391 33.333 2.52 0.00 0.00 2.74
1533 1984 8.391859 CACAAATACACAAACACAAGTAGTACA 58.608 33.333 2.52 0.00 0.00 2.90
1537 1998 6.791303 ACCACAAATACACAAACACAAGTAG 58.209 36.000 0.00 0.00 0.00 2.57
1617 2080 3.635373 ACAGAAACAGACTCGGTTACTCA 59.365 43.478 0.00 0.00 0.00 3.41
1620 2083 4.365723 TGAACAGAAACAGACTCGGTTAC 58.634 43.478 0.00 0.00 32.40 2.50
1652 2116 6.781014 CACCTGACATTATTACTCCCTAGGTA 59.219 42.308 8.29 0.00 33.38 3.08
1653 2117 5.602978 CACCTGACATTATTACTCCCTAGGT 59.397 44.000 8.29 0.00 35.34 3.08
1654 2118 5.602978 ACACCTGACATTATTACTCCCTAGG 59.397 44.000 0.06 0.06 0.00 3.02
1655 2119 6.732896 ACACCTGACATTATTACTCCCTAG 57.267 41.667 0.00 0.00 0.00 3.02
1656 2120 8.647796 CATTACACCTGACATTATTACTCCCTA 58.352 37.037 0.00 0.00 0.00 3.53
1657 2121 7.420214 CCATTACACCTGACATTATTACTCCCT 60.420 40.741 0.00 0.00 0.00 4.20
1658 2122 6.710744 CCATTACACCTGACATTATTACTCCC 59.289 42.308 0.00 0.00 0.00 4.30
1659 2123 6.204882 GCCATTACACCTGACATTATTACTCC 59.795 42.308 0.00 0.00 0.00 3.85
1660 2124 6.765989 TGCCATTACACCTGACATTATTACTC 59.234 38.462 0.00 0.00 0.00 2.59
1661 2125 6.658849 TGCCATTACACCTGACATTATTACT 58.341 36.000 0.00 0.00 0.00 2.24
1662 2126 6.935741 TGCCATTACACCTGACATTATTAC 57.064 37.500 0.00 0.00 0.00 1.89
1715 2198 2.028748 CCAAAAATGGAGCCCTTGTCTG 60.029 50.000 0.00 0.00 0.00 3.51
1716 2199 2.250924 CCAAAAATGGAGCCCTTGTCT 58.749 47.619 0.00 0.00 0.00 3.41
1717 2200 1.970640 ACCAAAAATGGAGCCCTTGTC 59.029 47.619 1.10 0.00 0.00 3.18
1719 2202 3.140623 CAAACCAAAAATGGAGCCCTTG 58.859 45.455 1.10 0.00 0.00 3.61
1720 2203 2.106338 CCAAACCAAAAATGGAGCCCTT 59.894 45.455 1.10 0.00 36.27 3.95
1805 2293 6.745116 ACTTAGTTTAATGGCTGTGGTTTTC 58.255 36.000 0.00 0.00 0.00 2.29
1845 2333 8.469200 TCAAGATTGATTTGTATCCATTGGAAC 58.531 33.333 9.98 9.79 30.87 3.62
1846 2334 8.592529 TCAAGATTGATTTGTATCCATTGGAA 57.407 30.769 9.98 0.00 30.87 3.53
1847 2335 7.201848 GCTCAAGATTGATTTGTATCCATTGGA 60.202 37.037 8.08 8.08 36.46 3.53
1848 2336 6.921857 GCTCAAGATTGATTTGTATCCATTGG 59.078 38.462 0.00 0.00 36.46 3.16
1849 2337 7.485810 TGCTCAAGATTGATTTGTATCCATTG 58.514 34.615 0.00 0.00 36.46 2.82
1850 2338 7.649533 TGCTCAAGATTGATTTGTATCCATT 57.350 32.000 0.00 0.00 36.46 3.16
1851 2339 7.287005 ACATGCTCAAGATTGATTTGTATCCAT 59.713 33.333 0.00 0.00 36.46 3.41
1852 2340 6.604396 ACATGCTCAAGATTGATTTGTATCCA 59.396 34.615 0.00 0.00 36.46 3.41
1853 2341 6.916387 CACATGCTCAAGATTGATTTGTATCC 59.084 38.462 0.00 0.00 36.46 2.59
1854 2342 6.417044 GCACATGCTCAAGATTGATTTGTATC 59.583 38.462 0.00 0.00 36.46 2.24
1856 2344 5.643664 GCACATGCTCAAGATTGATTTGTA 58.356 37.500 0.00 0.00 36.46 2.41
1857 2345 4.491676 GCACATGCTCAAGATTGATTTGT 58.508 39.130 0.00 0.00 36.46 2.83
1873 2475 3.386486 AGTTGCATTTGAACAGCACATG 58.614 40.909 0.00 0.00 38.11 3.21
1887 2489 7.663905 TCAGTGTTTGGTAGTAATAAGTTGCAT 59.336 33.333 0.00 0.00 0.00 3.96
1897 2499 7.297936 TCTTCATCTCAGTGTTTGGTAGTAA 57.702 36.000 0.00 0.00 0.00 2.24
1898 2500 6.911250 TCTTCATCTCAGTGTTTGGTAGTA 57.089 37.500 0.00 0.00 0.00 1.82
1899 2501 5.808366 TCTTCATCTCAGTGTTTGGTAGT 57.192 39.130 0.00 0.00 0.00 2.73
1900 2502 7.012327 TGTTTTCTTCATCTCAGTGTTTGGTAG 59.988 37.037 0.00 0.00 0.00 3.18
1901 2503 6.826231 TGTTTTCTTCATCTCAGTGTTTGGTA 59.174 34.615 0.00 0.00 0.00 3.25
1902 2504 5.652014 TGTTTTCTTCATCTCAGTGTTTGGT 59.348 36.000 0.00 0.00 0.00 3.67
1910 2512 9.604626 GAACTGTATTTGTTTTCTTCATCTCAG 57.395 33.333 0.00 0.00 0.00 3.35
1933 2535 2.186826 AAGTGCAGTGCGTGGGAAC 61.187 57.895 11.20 1.43 0.00 3.62
1937 2539 2.328989 CACAAGTGCAGTGCGTGG 59.671 61.111 11.20 0.00 0.00 4.94
1941 2543 1.135575 GCTTATCCACAAGTGCAGTGC 60.136 52.381 8.58 8.58 35.69 4.40
1955 2557 5.198274 GCAACAGTACAATTAGCGCTTATC 58.802 41.667 18.68 0.00 0.00 1.75
1958 2560 2.159707 CGCAACAGTACAATTAGCGCTT 60.160 45.455 18.68 0.00 37.20 4.68
1979 2584 2.959275 GCAGCTGCAATCATCTTGC 58.041 52.632 33.36 1.56 45.11 4.01
1990 2595 1.790623 CAACTGTTCAAATGCAGCTGC 59.209 47.619 31.89 31.89 42.50 5.25
2000 2605 3.351740 TGTTCTCCTTGCAACTGTTCAA 58.648 40.909 0.00 0.00 0.00 2.69
2015 2620 6.382608 GCTTTATCCTTTTGGTTCTGTTCTC 58.617 40.000 0.00 0.00 41.38 2.87
2016 2621 5.048713 CGCTTTATCCTTTTGGTTCTGTTCT 60.049 40.000 0.00 0.00 41.38 3.01
2025 2630 3.506067 AGGTTGACGCTTTATCCTTTTGG 59.494 43.478 0.00 0.00 42.21 3.28
2060 2665 0.463204 TCTGCCTAGCTGATCTGCAC 59.537 55.000 24.33 12.20 31.90 4.57
2082 2687 5.472137 TGTTATTTGGCACCTTTACAGAGAC 59.528 40.000 0.00 0.00 0.00 3.36
2086 2692 9.651913 AAATAATGTTATTTGGCACCTTTACAG 57.348 29.630 9.32 0.00 40.70 2.74
2124 2730 8.200120 CAGTCTTGAATCCAGACAATGATAGTA 58.800 37.037 15.52 0.00 35.23 1.82
2148 2755 0.996462 CGTGTGCCCGTATGTAACAG 59.004 55.000 0.00 0.00 0.00 3.16
2166 2773 3.000122 CACAAAATGAAGTTGTTGGCACG 60.000 43.478 0.00 0.00 37.09 5.34
2191 2799 6.564927 AGGGCCAATTATACAGGATAGGTTTA 59.435 38.462 6.18 0.00 0.00 2.01
2195 2803 4.785376 AGAGGGCCAATTATACAGGATAGG 59.215 45.833 6.18 0.00 0.00 2.57
2201 2809 3.072184 AGCTCAGAGGGCCAATTATACAG 59.928 47.826 6.18 0.00 0.00 2.74
2215 2823 7.320399 TCTCGTAATATCTCTAGAGCTCAGAG 58.680 42.308 25.26 25.26 40.81 3.35
2250 2858 0.249322 TCTTATAGCGCGGTCCTTGC 60.249 55.000 16.92 0.00 0.00 4.01
2251 2859 1.067212 AGTCTTATAGCGCGGTCCTTG 59.933 52.381 16.92 4.40 0.00 3.61
2270 2878 6.102663 CAGTCTGACCCTACATTCTAAACAG 58.897 44.000 3.76 0.00 0.00 3.16
2276 2884 4.651503 CCATACAGTCTGACCCTACATTCT 59.348 45.833 6.91 0.00 0.00 2.40
2279 2887 2.700897 GCCATACAGTCTGACCCTACAT 59.299 50.000 6.91 0.00 0.00 2.29
2294 2902 4.991687 GCTACTGGATTCTAACAGCCATAC 59.008 45.833 0.00 0.00 38.25 2.39
2325 2933 2.141517 CTGATATGCTGCCTTCGGAAG 58.858 52.381 10.82 10.82 0.00 3.46
2347 2955 5.008911 AGCCAAGCAAAATTTTGAAATGTCC 59.991 36.000 30.40 17.27 40.55 4.02
2565 3173 9.398538 ACACCTTGTTAGTTTTGTGAACTAATA 57.601 29.630 12.77 8.69 42.54 0.98
2575 3183 8.597662 TTAGCTAGTACACCTTGTTAGTTTTG 57.402 34.615 0.00 0.00 0.00 2.44
2603 3211 3.438216 TCAAATTGAGGGAGCACATGA 57.562 42.857 0.00 0.00 0.00 3.07
2609 3217 1.203287 GGCAGTTCAAATTGAGGGAGC 59.797 52.381 0.00 0.06 0.00 4.70
2610 3218 2.517959 TGGCAGTTCAAATTGAGGGAG 58.482 47.619 0.00 0.00 0.00 4.30
2611 3219 2.673775 TGGCAGTTCAAATTGAGGGA 57.326 45.000 0.00 0.00 0.00 4.20
2612 3220 3.749665 TTTGGCAGTTCAAATTGAGGG 57.250 42.857 0.00 0.00 32.39 4.30
2613 3221 5.058490 ACATTTTGGCAGTTCAAATTGAGG 58.942 37.500 14.81 0.00 38.89 3.86
2614 3222 5.754406 TGACATTTTGGCAGTTCAAATTGAG 59.246 36.000 14.81 0.00 38.89 3.02
2615 3223 5.668471 TGACATTTTGGCAGTTCAAATTGA 58.332 33.333 14.81 0.00 38.89 2.57
2616 3224 5.987777 TGACATTTTGGCAGTTCAAATTG 57.012 34.783 0.00 0.00 40.69 2.32
2619 3227 9.941325 AAATATATGACATTTTGGCAGTTCAAA 57.059 25.926 0.00 0.00 39.76 2.69
2622 3230 9.683069 CCTAAATATATGACATTTTGGCAGTTC 57.317 33.333 0.00 0.00 39.76 3.01
2623 3231 9.420118 TCCTAAATATATGACATTTTGGCAGTT 57.580 29.630 0.00 0.00 39.76 3.16
2624 3232 8.995027 TCCTAAATATATGACATTTTGGCAGT 57.005 30.769 0.00 0.00 39.76 4.40
2625 3233 9.683069 GTTCCTAAATATATGACATTTTGGCAG 57.317 33.333 0.00 0.00 39.76 4.85
2626 3234 9.194972 TGTTCCTAAATATATGACATTTTGGCA 57.805 29.630 0.00 0.00 41.29 4.92
2627 3235 9.683069 CTGTTCCTAAATATATGACATTTTGGC 57.317 33.333 0.00 0.00 37.84 4.52
2631 3239 9.799106 CCCTCTGTTCCTAAATATATGACATTT 57.201 33.333 0.00 0.00 0.00 2.32
2632 3240 9.170890 TCCCTCTGTTCCTAAATATATGACATT 57.829 33.333 0.00 0.00 0.00 2.71
2633 3241 8.742125 TCCCTCTGTTCCTAAATATATGACAT 57.258 34.615 0.00 0.00 0.00 3.06
2634 3242 7.789831 ACTCCCTCTGTTCCTAAATATATGACA 59.210 37.037 0.00 0.00 0.00 3.58
2635 3243 8.196378 ACTCCCTCTGTTCCTAAATATATGAC 57.804 38.462 0.00 0.00 0.00 3.06
2636 3244 9.892444 TTACTCCCTCTGTTCCTAAATATATGA 57.108 33.333 0.00 0.00 0.00 2.15
2638 3246 9.900112 ACTTACTCCCTCTGTTCCTAAATATAT 57.100 33.333 0.00 0.00 0.00 0.86
2639 3247 9.144298 CACTTACTCCCTCTGTTCCTAAATATA 57.856 37.037 0.00 0.00 0.00 0.86
2640 3248 7.624077 ACACTTACTCCCTCTGTTCCTAAATAT 59.376 37.037 0.00 0.00 0.00 1.28
2641 3249 6.958192 ACACTTACTCCCTCTGTTCCTAAATA 59.042 38.462 0.00 0.00 0.00 1.40
2642 3250 5.785940 ACACTTACTCCCTCTGTTCCTAAAT 59.214 40.000 0.00 0.00 0.00 1.40
2643 3251 5.152934 ACACTTACTCCCTCTGTTCCTAAA 58.847 41.667 0.00 0.00 0.00 1.85
2644 3252 4.748701 ACACTTACTCCCTCTGTTCCTAA 58.251 43.478 0.00 0.00 0.00 2.69
2645 3253 4.399483 ACACTTACTCCCTCTGTTCCTA 57.601 45.455 0.00 0.00 0.00 2.94
2646 3254 3.261818 ACACTTACTCCCTCTGTTCCT 57.738 47.619 0.00 0.00 0.00 3.36
2647 3255 5.479124 TTAACACTTACTCCCTCTGTTCC 57.521 43.478 0.00 0.00 0.00 3.62
2648 3256 6.756221 TCTTTAACACTTACTCCCTCTGTTC 58.244 40.000 0.00 0.00 0.00 3.18
2649 3257 6.326843 ACTCTTTAACACTTACTCCCTCTGTT 59.673 38.462 0.00 0.00 0.00 3.16
2650 3258 5.839606 ACTCTTTAACACTTACTCCCTCTGT 59.160 40.000 0.00 0.00 0.00 3.41
2651 3259 6.159988 CACTCTTTAACACTTACTCCCTCTG 58.840 44.000 0.00 0.00 0.00 3.35
2652 3260 5.839606 ACACTCTTTAACACTTACTCCCTCT 59.160 40.000 0.00 0.00 0.00 3.69
2653 3261 6.099159 ACACTCTTTAACACTTACTCCCTC 57.901 41.667 0.00 0.00 0.00 4.30
2654 3262 7.793948 ATACACTCTTTAACACTTACTCCCT 57.206 36.000 0.00 0.00 0.00 4.20
2655 3263 7.978414 GGTATACACTCTTTAACACTTACTCCC 59.022 40.741 5.01 0.00 0.00 4.30
2656 3264 7.978414 GGGTATACACTCTTTAACACTTACTCC 59.022 40.741 5.01 0.00 0.00 3.85
2657 3265 8.526147 TGGGTATACACTCTTTAACACTTACTC 58.474 37.037 6.69 0.00 0.00 2.59
2658 3266 8.426569 TGGGTATACACTCTTTAACACTTACT 57.573 34.615 6.69 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.