>input_sequence_71840
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-------------------------------------CACACTCCCCTCACTCCTTCATTCATCACTCACTCACTCAGCT
CCGCACACAAAGCTCTGAAGAGGACGAGAAGAAGTCC------------------GATCGATCTTGCCATGGACTCCAGG
GTGTCCAAGAGCCCACCTTCGTCTCCGCCCCCGGCGGCGGCGCAAGAAGACGAGGGG---GACGCGGCGGCGGCGGTGCG
GGTGACGAGCCGGCTGTACCTGCACAGGCCCGGGCCCGGCGCGGGGCCGCTGGAGAAGGACGCCGTGCTCCGCCGCATCC
GCCACCGGAGGCGCGCCAACCGCCTCCGGGACACGCTGCGCTCCCTCCTCGTCCTGCAGCAACAGCAGCCCACCGCGCCG
GAGCCGGAG---------------------------GACGCGTTCACGTCTCCGTAGCCGCGGG-----ACCTCCCCGGA
CCTTCTGGATCTCCTCCCTCTCCGTGGCGCACGCTCTGCCTCGTGTACCGCTGCTGCCTCGCGCACGCACGTTCGACGGT
GACCACGAGCGGCTGCGAATTCCACGAGCATTCATGTGTCCCATGCTTTTCTTTATAATGTACT----------GTACTA
CTTGTGTTTGTGTATTTGTGGTAGAGTAGGAGTACTAATTCAG--TGTGTAAGTCACTTAATTATTGCATGGATGCAAAT
GAGTAACCGAGTCT-GTTTCTGTTCAAATTATTTATACCTAGGGAGTAATAATGTCAGGTGTAATGG-------------
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>chr5B_1_TraesCS5B01G070300
TTTACTACTACCAGTATCTCTTTAACTGAAATCTTTATGTGTGGCTCTAGCTTAGCTTAGTTCTTGCGTGCTCAGTGCTC
ACAAGCATCTCCAAATTAATTAGCTTGACCAAACTAA-------------------------------------------
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----------------------------------------------TACTACTGCAAGTCTTTTATTTACCAAAGACTAG
TGTACAAGCTTCATCAGGCAGCCATGGGAATGGCATGGCGAGCTGTGAGTGTAAAGTGACGTCGCCCGAATCAAAGGTGG
TGTTTTCCTGGCGTGGCAGCCGAAATGTGTTCTTACCCAACTGGTCGTTGTCTCACGGAGAACAGATTCTAACCTTTCAG
TGTCACTCCTAGTCAATTACAGAGGACTTGCGCTACTAATCTTTTTTTTTTACCATCCCTCTCTCCCTCTCTCTAGAAA-
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-------------------------------------------------CTGCGGCTGGGCTAATAT-TTTCAGACCGAA
ACCGGCAAAGTTATGACACAAA-CTATTTAAAAAAAAATCGGGTCGTCATCGACACACCTAATCGTTGCATTCTGTTCG-
--TGCATGAGATTAATTAACTTGCAATGATTTGGGCAAAGCGGTCGTTTGAATGTGCTCCACAAC-------TCATCCCT
CATCACCATTTGTGCGTGAGCAGTGCGTGCGAGAGGAAAG----AAACAAAACAAAAAC-AAAAACAAACAGGCGGCGCT
GACACGTGAAACCATGTCCTCCAGCTACCTGTTTCCATAATACTACCTCCGTTCGGGTTTATTGGTCCTCATTATATTTC
GTGCCAAATTTTGATCATAGATTAAACTAACAAAATATTCACGCATATCATCAAACATTATATTTTTAAAAACTATGTTC
AAATATAAATCCAATGAAATAATTTTTCTTGACATGCATTAACATTTTGTTAGTTAAATCTTTAGTCAAAATTTAGCACA
AACTATAAAGAGGACCTGTAAATGAGGACGGAGGTAGTAAACAGCAACCCGGAGTACTAAAATC-ACAATTGAGCTCCCC
GAAACCGTCTATAAATGGCCCCTGCCTCGCCACCTTTCACACTCCCCTCACTCCTTCATTCATCACTCACTCACTCAGCT
CCGCACACAAAGCTCTGAAGAGGACGAGAAGAAGTCC------------------GATCGATCTTGCCATGGACTCCAGG
GTGTCCAAGAGCCCACCTTCGTCTCCGCCCCCGGCGGCGGCGCAAGAAGACGAGGGG---GACGCGGCGGCGGCGGTGCG
GGTGACGAGCCGGCTGTACCTGCACAGGCCCGGGCCCGGCGCGGGGCCGCTGGAGAAGGACGCCGTGCTCCGCCGCATCC
GCCACCGGAGGCGCGCCAACCGCCTCCGGGACACGCTGCGCTCCCTCCTCGTCCTGCAGCAACAGCAGCCCACCGCGCCG
GAGCCGGAG---------------------------GACGCGTTCACGTCTCCGTAGCCGCGGG-----ACCTCCCCGGA
CCTTCTGGATCTCCTCCCTCTCCGTGGCGCACGCTCTGCCTCGTGTACCGCTGCTGCCTCGCGCACGCACGTTCGACGGT
GACCACGAGCGGCTGCGAATTCCACGAGCATTCATGTGTCCCATGCTTTTCTTTATAATGTACT----------GTACTA
CTTGTGTTTGTGTATTTGTGGTAGAGTAGGAGTACTAATTCAG--TGTGTAAGTCACTTAATTATTGCATGGATGCAAAT
GAGTAACCGAGTCT-GTTTCTGTTCAAATTATTTATACCTAGGGAGTAATAATGTCAGGTGTAATGGCAAGAATAAAAAT
CAGCTC-------------------CCTTCTTTGTCCCAGACAAGGGCTCCATTTTTGGTTTGGATTCCATTATCCAAGT
TGCAACTTGCTTAAGAAATCCT-----GTGGGTGGGTATAGAGACTGATTGGGAAAACCACAGCCATTAAACTAAGTTGT
TTCTAGACTGTTGTTCCAATGGATACAAATCAA-----------------------------------------------
-------------------------------------------------------------------TCTTGAGCATGTG
CTGTTCAAATGCAACTTATTACTACCAAACACTGAGATGAAGAAAACAAATACAGTTCCCACGCACTGCACTTGTGGATA
AGCGCTAATTGT---ACTGTTGCGCAAGATGATTGCAGCTGCATTTGAACAGTTGCAAGGAGAACAGAACCAAAAGGATA
AAGCGTCAACCTCAGATTGTTGATGTGCAGATCAGCTAGGCAGATAGTC-TCTGTAAAGGTGCCAAATAACATTATTTGT
TTTTGGTATTACTATCA-TTGTCTGGATTCAAGACTGTTACATACGGGCACACGTGCCAACAACTTCATTTT-GTGTGTA
AACCTATCCTGTATAATTGGCCCTCTGAGCTCTAGAGATATTACGAGAAAGAACCTCGCAAGGACCGCGCTATAAGACTG
TTTAGAATGTAGGGTCAGACTGTATGGCTGTTAGAATCCAGTAGCCTATCTGCTTCCGAAGGCAGCATATCAGAGGACAT
TTCAAAATTTTGCTTGGCTGTCATCTTGTTCCACTCATTCTCGACGCGGAAAAAGACCCACTGGAACCGCCTCACCATTT
CCAAAGCTGTTATCGCAAACACTGTCAGGTAGTTGTGCCGCAGATGCGCCGATAGCTTGTATGTCCATGTACATCGGAGA
ATGAGATTGCTACCTAACACCCAATAAAATACCTGTAGAGCAATCAGGAAAGTATTAGTTCACAAAACTAACAAGGTGTA
CTAGCTAAAATCATGTGCTCCCTCAATTTGAACTGCCAAAATGTCATATATTTAGGAACAGAGGGAGTAAGTGTTAAAGA
GTGTATACCCA
>chr5D_1
TTTACAA-TACTAGTATCTCTTTAGCTGAAATCTTTATGTGTGGTTCTAGCTTAGCTTAGTTCTTGCGTGCTCAGTGCTC
ACAAGCGTCTCCCAATTAATGAGCTGTCTGTCTCAGATGTAGGAGTTGTCAGTTACAGCCATTCTTCTCGTTGTGTCAAG
GTTATGACTTGCGCTGCATCCGGTTGATAGTAGCTTGTATCTCGATAGGACTATGTAGCCAGGAGTTGTCTTAGGTTAAT
TAGTCAAACCATCTAGGTTATGTTTGTTCTGAAGGCTCGACCAAACTAATACTGCAAGTCTTTTAATTATCAAGC-CTAG
TGTAC-AACTTTCTTAGGGAGCCATGGCAAA-----------CTGTGAGTGTAAAGTGACGTCGCCCGAATCAAAGGTGG
TGTTTTCCTGGCGTGGCAGCAGAAATGTGTTGTTACCCAACTGGTCGTTGTCTCATGGAGAACAGATTCTAACCTTTCAG
TGTCACTCCTAGTCAATTACAGAGGACTTGCGCTACTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGCGGCTGAGCTAGTTGATTTCAGACCGAA
ACCGGCAAAGTTAGGACACAAG-CTAAATTTTTTAATTTCGAGTCGTCATCGACACACCTAATCGTGGCATTCTCTTTG-
--TACATGGGATTAATTAACTTGCAATGATTTGGGCAAAGCAGTCACTTGAATGTGCTCCACAAT-CACAAGTCATCTCC
CATCACCATCTGTGCGTGAGCAGTGCGTGCAAGAGGAG-----AAAACGAAACAAAAAC-AAAAACAAGCAAGCGACGCT
GACACGTGAAACCATGTCCTCCGGCTACCTGTTTCCATAA----------------------------------------
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-------------------------------------TAAACAGCAACCCGGAGTACTAAAATT-ATAATTGAGCTCTCC
GAAACCGCCTATAAATGCCCCCTGCCTCGCCACCTTTCACACTCCCCTCGTTCGCTCATTCATCGCTCACCCATTCT---
--GCACACAAAGATCTCGAGATCTCTCAACAAGTTAGATTGCCTTCTCGTCGTTGGATCAGTCTTGCCATGGACTCCAGG
ATGTCCAAGAGCCCCCTTTCGTCTCCGCCGGCGGCAGCCGCGCACGACGAGGGGGACGGTGACGCAGCGGCGGTGGTGCG
GGTCACGAGCCGAATGTACCTGCACAGGCCCGGGCCCGGTGCGGGGCCGCTGGAGAAGGATGCCGTGCTCCGCCGGATCC
GCCACCGGAGGCGCGCCAACCGCCTCCGGGACACGCTGCGCTCGCTCCTTGTCCTGCAGCAGCACG------CCGCGCCG
GAGCCGGAGGACGGCGAGCGGCCGGCGTGGCTCGACGACGCGTTCACGTCTCCCTAACCCCGGAAACCCA-CTGCCTGGA
CATTCTGGATCTCC---CTCTCCGTGGTGCACACTCTGCCTCGTGTACCGCTGCTGCTTCACGCACGCACGTTCGACGGT
GACCACGAGCGGCTGCGAATTCGACGGGCATTCATGTGCCCCATGCTTTTCTTTATATGCACACTGTACTAGTAGTAGTA
CTTTTGTTTGTGTATTTGTGGTAGGAATAC--TACTAATTCAG--TGTGTAAGTC-------------------------
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>chr5A_3
TACTACCAG--TAGTATCTCTTTAACTGAAATCTTTAGGTGTGGCTCTTGCTTAGCTTAGTTCTTGTGTGCTCAGTGCTC
ACAAGCGTCTCCAAATTAATTAGCTTGACCAAACTAA-------------------------------------------
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----------------------------------------------TA-------------------------------G
TGTAC-AACTTTCTTAGGCAGCCATGGCAAA-----------CTGTGAGTGTAAAGTGACGTCGCCCGAATCAAAGGTGG
TGTTTTCCTGGCGTGGCAGCTGAAATGTGTTCTTACCCAACTGGTCGTT-TCTCACGGAGAACAGATTCTAACCTTTCAC
TGTCACTCCTAGTCAATTTCAGAGGACTTGCGCCACTAATCTTTTTTACCATCC-TCTCTCTCTCTCTCTCTCTAGAAA-
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-------------------------------------------------CTGCGGCTGAGCTAGTTGATTTCAGACTGAA
ACCGGCAAAGTTAGGACACAAAACTAAAATTTATAATTTCGGGTCGTCATCGACACACCTACTCGTGGCATTCTCTTTGT
ACTACATGGGATTAATTAACTTGCAATGATTTGGGCAAAGCATTCACCTGAATGTGCTCCACAAACCACAAGTCATCTCC
CATCACCATCTGTGAGTG-----------CGAGAGGAAGAAACAAAACAAAACAAAAAC-AAAAGCAAACAAGCGGCGCT
GACACGTGAAACCATGTCCTCCGGCTCCCCGTTTCCGTAA----------------------------------------
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-------------------------------------TAAACAGCAACCCGGGGTACTAAAATCAATAATTGAGCTCCCC
GAAACCGCCTATAAATGGCCCCTGCCTCGCCACCTTTCACACTCCCCTCACTCGCTCATTCATCACTC------------
--GCACACGAAGCTCTCA--------AGAAGAAGTCT------------------GATCGATCTTGCCATGGACTCCAGG
ATGTCCAAGAGCCCACCTTCGTCGCCGCCCCCGGCGGCGGCGCAAGAAGACGAGGGG---GAC---GCGGCGGCGGTGCG
GGTGACGAGCCGGCTGTACCTGCACAGGCCCGGGCCCGGCGCGGGGCCGCTGGAGAAGGACGCCGTGCTCCGCCGCATCC
GCCACCGGAGGCGCGCCAACCGCCTCCGGGACACGCTGCGCTCGCTCCTCGTCCTGCAGCAGCACG------CCGCGCCG
GAGCCGGAGGACGGCGAGCGGCCGGCGTGGCTCGACGACGCGTTCACGTCTCCGTAGCCGCGCGCGGAAACCCCCCCGGA
CCTTCTGGATCTCCTCCCTCTCCGTGGCGCACACTCTGCCTCGTGTACCGCTGCTGCCTCACGCACGCACGCTCGACGGT
GACCACGAGCGGCTGCGAATTCGACGAGCATTGATGTGTCCCATGCTTTTCTTTATATGTACACT------GTATTAGTA
CTTGTGTTTGTGTATTTGTGGTAGAGTAGGAGTACTAGTAATTCATGTGTAAGTCACTTAATTATTGCATGGATGCAA-G
GAATAACCGAGCTTGGTTTCTGTTCAAATTATTTACCTAA------TAATAATGTCAGGTGTGATGGCAAGAATGAAAAT
CAGCTCATTTCTCGGGAGAAATCTTCCTTCAGTGTCCTGAATGAGGGCTCCA-TTTTGGTTTGGATTCCATTATCCAAGT
TGCAACTTGCTTAGGAAAATAAAATCCGTTGGTGGGTATATACACTGACTGCAAACACCACAAGCATTAAACTAAGCTGT
TTCTAGACTGTTCCAATGGGTAACTGTTACTTCATCCGGGCCCAGCCATTATCTGATAGCAGGAAATACTCTGCTTATGA
GTTGTGACAATCAATCTTGTCTGCTTCAGCCAATGATATGATAAACAAGATGAGATAATCATGACTTTCTTGACAATGTG
CTGTTCAAGTGCAACTTA------CCAGACATTGCGATGAAGAAAACAAATACGATTCGCACCCATTGCACTTGCGCATG
AGCGCTAATTGTTGTACTGTTGCACAAGATGATTACAGATGCATCTGAACAGTTGCAAGTTGAACAGAAACAAAAGGATA
AAGCATCAAACTCAGATTGTTGATATGCAGATCAGCTAAGCAGATTATC-TTTGTAAAGGTGCCAAATCATAAATT---T
TTTTGGTATCACTATCATTTGTCTGGATTCAAGAGTGTTACATAT-GGCACATGTGCCAACAACTTCATTTC-GTGTGGA
AATCTATCTTGTACAATTGGCCTTCCGAGCTCTAGAGATATTACGAGA--GAACCTCATACGGACCATGCTATAAGATTG
TTTTGAGTGTAGGGTTAGACTTTATGGCTGTTAGAATCCAGTAGCCTATCTGATTCTGAAGGCAGCATATCAGATGACAA
TTCAAAATTTTGCTTGGCTGTCATCTTGTTCCACTCATTCTCGACGCGGAAAAAGACCCACTGGAACCGCCTCACCATTT
CCAGAGCTGTTATCGCAAACACTGTCAGGTAGTTGTGCCGAAGATGCGCCGAAAGCTTGTATGTCCATGTACACCGGAGA
ATGAGATTGCTACCTAACACCCAATAAAATACCTGTAGAGCAATCATGTAAGGATTAGTTCAGAAAATTAACAAGGTGTA
CTAGCTAAAACCATGT----------------------------------------------------------------
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>chr5D_610
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--------------------------------------------AAAAAAACAAAAAACAAAAAACAAACAGGCGGCGCT
GACACGTGAAACCATGTCCTCCGGCTACCCGTTTCCATAA----------------------------------------
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-------------------------------------TAAACAGCAACCCGGAGTACTAAAATC-ATAATTGCGCTCCCC
GAAACCGGCTATAAATGGCCCCTGCCTCGCCACCTTTCACACTCCCCTCACTCGCTCTCTCATCACTCACTCACTCAGCT
CCGCACACAAAGCTCTCAAGAAGACGAGAAGAAGTCC------------------GATCGATCTTGCCATGGACTCCAGG
GTGTCCAAGAGCCCACCGTCGTCTCCGCCGCCGGCGGCTGCGCACGACGAGGGGGACGGTGACGCGGCGGCGGCGGTGCG
GGTCACGAGCCGGCTGTACCTGCACAGGCCCGGGCCCGGCGCGGGGCCGCTGGAGAAGGACGCCGTGCTCCGCCGCATCC
GCCACCGGAGGCGCGCCAACCGCCTCCGGGACACGCTGCGCTCGCTCCTCGTCCTGCAGCAGCAGCAGCCCACCGCACCG
GAGCCGGAG---------------------------GACGCGTTCACGTCTCCGTAGCCGCGGG-----ACCTCCCCGGA
CCTTCTGGATCTCC---CTCCCCGTGGTGCACAATGTGCCTCGTGTACCGCTGCTGCCTCGCGCACGCACGTTCGACGCT
GACCACGAGCGGCTGCGAATTCGACGAGCATTGATGTGTCCCATGCTTTTCTTTTTATGTAT-------TGATAGTAGTT
GTATTTGTGTAGTATTTGTGGTAGAGTAGGAGTACTAATTCAG--TGTGTAGGTCACTTAATTATTGCGTGGATGCAAAG
GAATAACCGGGTTT-GTTTCTGTTCAAATTATTTACCTAA------TAACAATGTCAGGTGTAGTGGCAAGAATAAAAAT
CAGCTCATTTCTCGGAAGAAATCTTCCTAGTGTCCC---AATGAGGGCTCCA-TTTTGGTTTGGATTCCATTATCCAAGT
GGCAACTTGCTTAAGAAATCCT-----GTGGGTGGGTATATACACTGATTGGAAAAACCACAGCCATTAAACTAAGTTGT
TTCTAGACTGTTCCAATGGGTAACCGTTACTTCATTCGGGCCCAGACATCATCTGGTAGAAGGAAATACTCTGC------
-TTGTGACAATCAATCTTGTCTGCTTCAGCCAATGATATGATAAACAAGATGAGATAATCATGACTTTCTTGACAATGTG
CTGTTCAAGTGCAACTTA------CCAAACATTAAGATGACGAAAACAAATACATTTCGCACCCGCTGCACTTGTGCTTG
AGCGCTAATTGTTGTACCGTTGCACAAGATGATTACAGATGGATCTGAACAGTTGCAAGTTGAACAGAAACAAAAGGATA
GAGCATTAACCTCAGATTGTCGATATGCAGATCAGCTAAGCAGATAATCTTTTGTAAAGGTGCCAAATCATAA-TT---T
TTTTGGTATCACTATCA-TTGTCTGGATTCAAGAGTGTTACATAC-GGCACATGTGCCAACAACTTCATTTTTGTGTGGA
AATCTATCTTGTATAATTGGCCTTCTGAGCTCTAGAGATAGTACGAGAAAGAACATCATAAGGACCGCGCTATAAGATTG
TTTTGAGTGTAGGGTCAGACTTTATGGCTGTTAGAATCCAGTAGCCTATCTGATTCCGAAGGCATCACATCAGACGACAT
TTCAAAATTTTGCTTGGCTGTCATCTTGTTCCACTCATTCTCGACGCGGAAAAAGACCCACTGGAACCGCCTCACCACTT
CCAAAGCTGTTATCGCAAACACTGTCAGGTAGTTGTGCCGAAGATGCGCCGATAGCTTGTATGTCCATGTACATCGGAGA
ATGAGATTGCTACCTAACACCCAATAAAATACCTGTAGAGCAATCATGAAAGGATTAGTTCAGAAAACTACCAAGGTGTA
CCAGCTAAAACCATG-----------------------------------------------------------------
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>SNPs
-----S-S---S--------------------------------------------------------------------
------S-------------------------------------------------------------------------
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------------------------------------------------S----------------S---S---SSS----
-----S-S---SS-S------------S--SSSSSSSSSSSS--------------------------------------
--------------------S-----------------------------------------------------------
-----------------------------------------------SSSSS--S--S-------S--------------
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----------------------------------------------------------S----S-SS-------------
-------------S------------SS-SSS-S--SS----------------------------S-------S--S--
---S----S--------------------------------S---SS-----------------S------------S-S
---------S----------------------------SS----------------------------------------
----------------------S-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------S-------------
-------S---------------------------------------------SS-------------------------
----------------S----S----------------------------------------------------------
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-------------------------------------------S-----------------S------------------
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--------------------------------S-----------------------------------------------
----------------------S----------------------------------SSSSSSS-------------S--
-------------------------------------------------------------------------------S
--S---------S----------------------SSSSSSSSSSS----------------------------------
-------------------------------S-----SSS-SS---------S---------------------------
----------------------------------------S-S---------S---------------------------
------------SSSSSSSSSS-SSSSS-SSSS-----------------------------------------------
-------------------------------------------------------------------------SS-----
--------S---------SSSSSS-------S----------------------S---S---S-------------S--S
-----------------------S----------S---S-----S--------------SS--------S----------
----S-------------------S-------------S-------S----S----------------S-S-SSS-SSS-
---------S------------------------S----------S------S-------------------------S-
--S-----S-------------S----------------------------------SS------------------S--
---S--S--------------S------------------------------S---------------------S-----
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----------------------------------------S---------------------------------------
----------------------------------------------S-----S---------S-----------------
----------S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSS
>forward_786
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----------------------------------------------AAACTGCGGCTGGGCTAATA--------------
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>reverse_2858
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---------------------------------------------------------GCAAGGACCGCGCTATAAGA---
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