Multiple sequence alignment - TraesCS5B01G065800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G065800 chr5B 100.000 3095 0 0 1 3095 74141490 74138396 0.000000e+00 5716.0
1 TraesCS5B01G065800 chr5A 93.893 2145 109 8 102 2231 55340736 55342873 0.000000e+00 3216.0
2 TraesCS5B01G065800 chr5D 95.625 1417 56 3 840 2254 67954542 67953130 0.000000e+00 2268.0
3 TraesCS5B01G065800 chr5D 89.674 368 28 4 473 839 67959091 67958733 7.820000e-126 460.0
4 TraesCS5B01G065800 chr5D 92.537 67 1 1 1 67 67959487 67959425 3.290000e-15 93.5
5 TraesCS5B01G065800 chr5D 95.745 47 2 0 55 101 67959416 67959370 3.310000e-10 76.8
6 TraesCS5B01G065800 chrUn 90.295 474 34 6 2626 3095 221273393 221272928 7.340000e-171 610.0
7 TraesCS5B01G065800 chrUn 95.213 376 18 0 2227 2602 221273832 221273457 2.050000e-166 595.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G065800 chr5B 74138396 74141490 3094 True 5716.0 5716 100.000 1 3095 1 chr5B.!!$R1 3094
1 TraesCS5B01G065800 chr5A 55340736 55342873 2137 False 3216.0 3216 93.893 102 2231 1 chr5A.!!$F1 2129
2 TraesCS5B01G065800 chr5D 67953130 67954542 1412 True 2268.0 2268 95.625 840 2254 1 chr5D.!!$R1 1414
3 TraesCS5B01G065800 chr5D 67958733 67959487 754 True 210.1 460 92.652 1 839 3 chr5D.!!$R2 838
4 TraesCS5B01G065800 chrUn 221272928 221273832 904 True 602.5 610 92.754 2227 3095 2 chrUn.!!$R1 868

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
179 242 0.684153 ATTTTCCCTGATGGTGGCCG 60.684 55.0 0.0 0.0 34.77 6.13 F
1142 1307 0.609151 TGCCGACCTTGTCCGATAAA 59.391 50.0 0.0 0.0 0.00 1.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1870 2035 1.003355 CCACCGTTGGCATGTCTCT 60.003 57.895 0.00 0.0 35.56 3.10 R
2840 3061 0.032130 TCTAATGACCGCGATCTGGC 59.968 55.000 8.23 0.0 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
131 194 6.773638 ACTCCTATATGAATTACCTTGCCTG 58.226 40.000 0.00 0.00 0.00 4.85
143 206 6.969993 TTACCTTGCCTGTATCAAGTTTTT 57.030 33.333 0.00 0.00 39.30 1.94
152 215 7.923878 TGCCTGTATCAAGTTTTTCTTTTTACC 59.076 33.333 0.00 0.00 33.63 2.85
168 231 3.421919 TTACCGTTTCCGATTTTCCCT 57.578 42.857 0.00 0.00 35.63 4.20
179 242 0.684153 ATTTTCCCTGATGGTGGCCG 60.684 55.000 0.00 0.00 34.77 6.13
207 275 2.341318 GGTTTCCCGGTCAATTTTCG 57.659 50.000 0.00 0.00 0.00 3.46
298 366 3.450096 GTCTGGTATTTCTCCTACCGGTT 59.550 47.826 15.04 0.00 43.38 4.44
339 408 3.006940 TCCGGATTTCTTTGACCGAATG 58.993 45.455 0.00 0.00 46.94 2.67
602 766 5.104193 AGGCATGGAGTACTTGATTCTCATT 60.104 40.000 0.00 0.00 0.00 2.57
703 867 3.176924 TGCTCCTCATCTCCTATACCC 57.823 52.381 0.00 0.00 0.00 3.69
704 868 2.450886 TGCTCCTCATCTCCTATACCCA 59.549 50.000 0.00 0.00 0.00 4.51
705 869 3.078153 TGCTCCTCATCTCCTATACCCAT 59.922 47.826 0.00 0.00 0.00 4.00
706 870 4.294970 TGCTCCTCATCTCCTATACCCATA 59.705 45.833 0.00 0.00 0.00 2.74
776 940 6.851609 TGTATTGAGTGCATTAACAATGACC 58.148 36.000 15.49 8.04 41.46 4.02
788 952 7.596494 CATTAACAATGACCAACAGATGAGTT 58.404 34.615 0.00 0.00 41.46 3.01
813 977 6.773200 TGAGTTAATTGTGTGTTGGGTGAATA 59.227 34.615 0.00 0.00 0.00 1.75
816 980 8.646900 AGTTAATTGTGTGTTGGGTGAATAAAT 58.353 29.630 0.00 0.00 0.00 1.40
830 994 8.413229 TGGGTGAATAAATTTCAAAGCTATAGC 58.587 33.333 17.33 17.33 42.49 2.97
831 995 8.413229 GGGTGAATAAATTTCAAAGCTATAGCA 58.587 33.333 26.07 5.05 45.16 3.49
859 1023 8.344098 CAGATGCTTGAATTTTATCCTTCTCTC 58.656 37.037 0.00 0.00 0.00 3.20
983 1147 6.348498 TGCATACAAGCATCAGTACAAGTAT 58.652 36.000 0.00 0.00 40.11 2.12
1080 1245 0.663153 GCACTCCGGCCATTATGAAC 59.337 55.000 2.24 0.00 0.00 3.18
1142 1307 0.609151 TGCCGACCTTGTCCGATAAA 59.391 50.000 0.00 0.00 0.00 1.40
1143 1308 1.208535 TGCCGACCTTGTCCGATAAAT 59.791 47.619 0.00 0.00 0.00 1.40
1150 1315 3.381272 ACCTTGTCCGATAAATTGCCATG 59.619 43.478 0.00 0.00 0.00 3.66
1157 1322 4.022935 TCCGATAAATTGCCATGATCAAGC 60.023 41.667 12.86 12.86 0.00 4.01
1165 1330 2.026542 TGCCATGATCAAGCTGAAGAGT 60.027 45.455 18.64 0.00 0.00 3.24
1267 1432 6.741240 GCATGAAACACTTGGTATTCCCTTTT 60.741 38.462 0.00 0.00 0.00 2.27
1359 1524 0.836606 TGGTCAAGGACAAGCTCACA 59.163 50.000 0.00 0.00 33.68 3.58
1457 1622 3.037549 GCATTATTGGATTTGGGGGTGA 58.962 45.455 0.00 0.00 0.00 4.02
1504 1669 1.268066 TCGCCATACCAACTACACCA 58.732 50.000 0.00 0.00 0.00 4.17
1545 1710 4.344102 CCTGGTAATCATAGAAACGGAGGA 59.656 45.833 0.00 0.00 0.00 3.71
1797 1962 2.046023 ACAGCGGCAATGCTAGCA 60.046 55.556 21.85 21.85 45.23 3.49
1860 2025 2.913777 TCACGTCCACTAGTGATTCG 57.086 50.000 24.68 23.30 41.81 3.34
1870 2035 3.056821 CACTAGTGATTCGGTGAACTGGA 60.057 47.826 18.45 0.00 32.12 3.86
1983 2148 1.648467 GCTCCACATTTCGGCCAGAC 61.648 60.000 2.24 0.00 0.00 3.51
2085 2250 0.752658 AGTTTGGGTTTCAAGCTGGC 59.247 50.000 0.00 0.00 43.70 4.85
2088 2253 4.404654 GGGTTTCAAGCTGGCGCG 62.405 66.667 0.00 0.00 42.32 6.86
2100 2265 3.269347 GGCGCGTGTTGACACAGT 61.269 61.111 8.43 0.00 46.75 3.55
2308 2479 9.129532 GATGTTAATTGATTCCCAGAAATCTCT 57.870 33.333 0.00 0.00 36.73 3.10
2371 2542 6.044754 TGAGCAGGATCTGGATTTTATATGGT 59.955 38.462 0.00 0.00 31.21 3.55
2377 2548 7.293299 AGGATCTGGATTTTATATGGTGTCTCA 59.707 37.037 0.00 0.00 0.00 3.27
2412 2583 3.316071 TTTAGGTTTCGCGGACATACA 57.684 42.857 6.13 0.00 0.00 2.29
2466 2637 8.706492 TTTCAGCATTTTTAAGCCATTCATAG 57.294 30.769 0.00 0.00 0.00 2.23
2502 2673 5.186409 ACAAATGCAGCCAATAAGAGTCAAT 59.814 36.000 0.00 0.00 0.00 2.57
2511 2682 5.009310 GCCAATAAGAGTCAATGCATGATCA 59.991 40.000 0.00 0.00 40.97 2.92
2514 2685 7.255486 CCAATAAGAGTCAATGCATGATCACAT 60.255 37.037 0.00 0.00 40.97 3.21
2535 2706 1.700042 GGGGAATCCTGATGCTCCGT 61.700 60.000 0.00 0.00 24.20 4.69
2538 2709 1.139853 GGAATCCTGATGCTCCGTCTT 59.860 52.381 0.00 0.00 0.00 3.01
2557 2728 6.324819 CGTCTTCGGTCAGTATAGGTTAAAA 58.675 40.000 0.00 0.00 0.00 1.52
2585 2756 6.279513 AGTCCTTGTTGTGAGATAAGAGAG 57.720 41.667 0.00 0.00 0.00 3.20
2610 2828 1.136336 GTCGATGTGGCTTCGTGTTTC 60.136 52.381 0.00 0.00 37.82 2.78
2626 2844 0.742505 TTTCGTAGGTCATCCGCGAT 59.257 50.000 8.23 0.00 41.99 4.58
2627 2845 0.309922 TTCGTAGGTCATCCGCGATC 59.690 55.000 8.23 0.00 41.99 3.69
2628 2846 1.081376 CGTAGGTCATCCGCGATCC 60.081 63.158 8.23 2.04 38.49 3.36
2629 2847 1.081376 GTAGGTCATCCGCGATCCG 60.081 63.158 8.23 0.00 39.05 4.18
2646 2864 4.415332 GCGAGACGACGGGAGCAA 62.415 66.667 0.00 0.00 0.00 3.91
2690 2908 0.106868 TATTGGAGACGAGAGCCCGA 60.107 55.000 0.00 0.00 0.00 5.14
2698 2916 2.899044 CGAGAGCCCGATCGGAGAC 61.899 68.421 35.42 22.60 42.51 3.36
2699 2917 1.824329 GAGAGCCCGATCGGAGACA 60.824 63.158 35.42 0.00 42.51 3.41
2708 2926 2.315781 GATCGGAGACAGGCATGCCA 62.316 60.000 37.18 15.60 42.51 4.92
2714 2932 0.471617 AGACAGGCATGCCATAGTCC 59.528 55.000 34.28 23.68 38.92 3.85
2718 2938 2.818169 GGCATGCCATAGTCCCGGA 61.818 63.158 32.08 0.00 35.81 5.14
2744 2964 0.998226 CGCCAACACTTTGATGCGTG 60.998 55.000 0.00 0.00 38.11 5.34
2754 2974 1.438651 TTGATGCGTGTGAAGTAGGC 58.561 50.000 0.00 0.00 0.00 3.93
2760 2980 1.710013 CGTGTGAAGTAGGCGTTGAT 58.290 50.000 0.00 0.00 0.00 2.57
2776 2997 2.048444 TGATGGAGAGATGCTTTGGC 57.952 50.000 0.00 0.00 39.26 4.52
2797 3018 3.782443 GGGTGTGGTAGGCCTCGG 61.782 72.222 9.68 0.00 35.27 4.63
2829 3050 1.435515 GCTTTGGTTGCGGTTGTCA 59.564 52.632 0.00 0.00 0.00 3.58
2840 3061 0.321653 CGGTTGTCAAGGAAGAGGGG 60.322 60.000 0.00 0.00 0.00 4.79
2850 3071 3.798954 GAAGAGGGGCCAGATCGCG 62.799 68.421 4.39 0.00 0.00 5.87
2856 3077 2.203070 GGCCAGATCGCGGTCATT 60.203 61.111 23.39 0.00 0.00 2.57
2864 3085 2.120232 GATCGCGGTCATTAGAGTGTG 58.880 52.381 15.99 0.00 0.00 3.82
2903 3124 0.461548 TGGACGGACTGCATGATCTC 59.538 55.000 0.00 0.00 0.00 2.75
2905 3126 0.596083 GACGGACTGCATGATCTCGG 60.596 60.000 0.00 0.00 0.00 4.63
2906 3127 1.323271 ACGGACTGCATGATCTCGGT 61.323 55.000 0.00 0.00 0.00 4.69
2934 3155 0.528924 TGAGATACAACCACCGGACG 59.471 55.000 9.46 0.00 0.00 4.79
2958 3179 0.620556 ACCAATCGATCTGCTGGGTT 59.379 50.000 16.32 0.00 32.94 4.11
2968 3189 0.960364 CTGCTGGGTTTATGTGGCGT 60.960 55.000 0.00 0.00 0.00 5.68
2969 3190 0.958382 TGCTGGGTTTATGTGGCGTC 60.958 55.000 0.00 0.00 0.00 5.19
2970 3191 1.977594 GCTGGGTTTATGTGGCGTCG 61.978 60.000 0.00 0.00 0.00 5.12
2971 3192 1.977594 CTGGGTTTATGTGGCGTCGC 61.978 60.000 9.22 9.22 0.00 5.19
3008 3229 4.906618 GGAGGTGTCCAACAAGATCTTAA 58.093 43.478 7.86 0.00 43.31 1.85
3048 3269 3.002102 GGTTGCTTTCGTATTTCCGGTA 58.998 45.455 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 119 7.865706 AATTCATATAGGAGTTTTGCGAAGT 57.134 32.000 0.00 0.00 0.00 3.01
168 231 2.359354 CGTTTCCGGCCACCATCA 60.359 61.111 2.24 0.00 0.00 3.07
265 333 8.164070 AGGAGAAATACCAGACAGTTTTACAAT 58.836 33.333 0.00 0.00 0.00 2.71
288 356 1.987855 CTGGCCAGAACCGGTAGGA 60.988 63.158 29.88 3.93 41.02 2.94
289 357 1.550130 TTCTGGCCAGAACCGGTAGG 61.550 60.000 38.69 12.23 42.06 3.18
298 366 1.415672 AACCGGTCTTTCTGGCCAGA 61.416 55.000 32.00 32.00 46.11 3.86
339 408 3.349927 ACTAATACGGCCAGGGTTTTTC 58.650 45.455 2.24 0.00 0.00 2.29
395 464 4.683129 GCATGGAAAATGTTATTGGGACCC 60.683 45.833 2.45 2.45 0.00 4.46
467 624 3.239449 CACCTACCCAGTCATGCCTATA 58.761 50.000 0.00 0.00 0.00 1.31
703 867 9.859427 ACACAAATTTGAACTTCACCATATATG 57.141 29.630 24.64 5.68 0.00 1.78
705 869 9.906660 GAACACAAATTTGAACTTCACCATATA 57.093 29.630 24.64 0.00 0.00 0.86
706 870 8.641541 AGAACACAAATTTGAACTTCACCATAT 58.358 29.630 24.64 0.00 0.00 1.78
776 940 7.588854 CACACAATTAACTCAACTCATCTGTTG 59.411 37.037 0.00 0.00 46.09 3.33
788 952 4.527944 TCACCCAACACACAATTAACTCA 58.472 39.130 0.00 0.00 0.00 3.41
798 962 7.518211 GCTTTGAAATTTATTCACCCAACACAC 60.518 37.037 0.00 0.00 0.00 3.82
979 1143 7.168219 ACCATGTGTTCTGTACATTTGATACT 58.832 34.615 0.00 0.00 39.39 2.12
980 1144 7.377766 ACCATGTGTTCTGTACATTTGATAC 57.622 36.000 0.00 0.00 39.39 2.24
983 1147 7.120579 GGAATACCATGTGTTCTGTACATTTGA 59.879 37.037 0.00 0.00 36.67 2.69
1080 1245 1.153823 GGTGTCGATGGTGACGAGG 60.154 63.158 0.00 0.00 41.87 4.63
1142 1307 3.628008 TCTTCAGCTTGATCATGGCAAT 58.372 40.909 18.91 1.87 0.00 3.56
1143 1308 3.014623 CTCTTCAGCTTGATCATGGCAA 58.985 45.455 18.91 8.18 0.00 4.52
1150 1315 1.478510 TCCGGACTCTTCAGCTTGATC 59.521 52.381 0.00 0.00 0.00 2.92
1157 1322 3.998156 TCCGTCCGGACTCTTCAG 58.002 61.111 30.92 14.85 39.76 3.02
1267 1432 1.962822 CTTGCTCCTCGTTGCAGCA 60.963 57.895 0.24 0.00 41.45 4.41
1359 1524 6.899393 TCAATGCTGAAGTTGTTTCCTAAT 57.101 33.333 0.00 0.00 34.77 1.73
1457 1622 4.218852 CCTGACGAAAGAAGGAGTAAGTCT 59.781 45.833 0.00 0.00 39.70 3.24
1504 1669 1.689273 AGGAAAGCAGTGAGAGAACGT 59.311 47.619 0.00 0.00 0.00 3.99
1545 1710 1.056660 ACGGCCCGATGGATAGAAAT 58.943 50.000 11.71 0.00 0.00 2.17
1860 2025 1.677217 GGCATGTCTCTCCAGTTCACC 60.677 57.143 0.00 0.00 0.00 4.02
1870 2035 1.003355 CCACCGTTGGCATGTCTCT 60.003 57.895 0.00 0.00 35.56 3.10
1983 2148 1.669115 CCCTGTCAGTCCAGCAACG 60.669 63.158 0.00 0.00 0.00 4.10
2024 2189 3.753272 CACGACCCTGAATGATCTTGTTT 59.247 43.478 0.00 0.00 0.00 2.83
2088 2253 2.878406 AGCCATGTAACTGTGTCAACAC 59.122 45.455 6.33 6.33 46.59 3.32
2100 2265 1.486310 CTGCTCCAGGTAGCCATGTAA 59.514 52.381 8.05 0.00 42.05 2.41
2308 2479 1.976474 GCCAGGGATTGAAACGCCA 60.976 57.895 0.00 0.00 0.00 5.69
2371 2542 1.070134 ACGCCAAAACTAGCTGAGACA 59.930 47.619 0.00 0.00 0.00 3.41
2377 2548 3.483421 ACCTAAAACGCCAAAACTAGCT 58.517 40.909 0.00 0.00 0.00 3.32
2444 2615 7.259882 TGTCTATGAATGGCTTAAAAATGCTG 58.740 34.615 0.00 0.00 0.00 4.41
2466 2637 5.067674 TGGCTGCATTTGTAGGAATATTGTC 59.932 40.000 0.50 0.00 0.00 3.18
2502 2673 3.245016 GGATTCCCCTATGTGATCATGCA 60.245 47.826 0.00 0.00 35.70 3.96
2511 2682 2.641815 GAGCATCAGGATTCCCCTATGT 59.358 50.000 0.00 0.00 45.60 2.29
2514 2685 1.734655 GGAGCATCAGGATTCCCCTA 58.265 55.000 0.00 0.00 45.60 3.53
2535 2706 9.729281 AAAATTTTAACCTATACTGACCGAAGA 57.271 29.630 0.37 0.00 0.00 2.87
2557 2728 9.442047 CTCTTATCTCACAACAAGGACTAAAAT 57.558 33.333 0.00 0.00 0.00 1.82
2568 2739 3.367395 CCGTGCTCTCTTATCTCACAACA 60.367 47.826 0.00 0.00 0.00 3.33
2570 2741 2.826128 ACCGTGCTCTCTTATCTCACAA 59.174 45.455 0.00 0.00 0.00 3.33
2585 2756 2.740714 GAAGCCACATCGACCGTGC 61.741 63.158 10.60 7.06 32.85 5.34
2610 2828 1.081376 GGATCGCGGATGACCTACG 60.081 63.158 6.13 0.00 35.64 3.51
2629 2847 3.909258 TTTGCTCCCGTCGTCTCGC 62.909 63.158 0.00 0.00 0.00 5.03
2630 2848 0.736325 AATTTGCTCCCGTCGTCTCG 60.736 55.000 0.00 0.00 0.00 4.04
2631 2849 1.128692 CAAATTTGCTCCCGTCGTCTC 59.871 52.381 5.01 0.00 0.00 3.36
2632 2850 1.156736 CAAATTTGCTCCCGTCGTCT 58.843 50.000 5.01 0.00 0.00 4.18
2643 2861 1.150827 GGCCTCAGCAACAAATTTGC 58.849 50.000 18.12 5.24 45.22 3.68
2690 2908 1.703014 ATGGCATGCCTGTCTCCGAT 61.703 55.000 35.53 16.59 36.94 4.18
2698 2916 1.598962 CGGGACTATGGCATGCCTG 60.599 63.158 35.53 26.01 36.94 4.85
2699 2917 2.822637 CCGGGACTATGGCATGCCT 61.823 63.158 35.53 23.20 36.94 4.75
2708 2926 2.478890 CGACACGCTCCGGGACTAT 61.479 63.158 0.00 0.00 32.98 2.12
2739 2959 1.068417 AACGCCTACTTCACACGCA 59.932 52.632 0.00 0.00 0.00 5.24
2744 2964 2.094182 TCTCCATCAACGCCTACTTCAC 60.094 50.000 0.00 0.00 0.00 3.18
2754 2974 2.353889 CCAAAGCATCTCTCCATCAACG 59.646 50.000 0.00 0.00 0.00 4.10
2760 2980 1.078214 CCGCCAAAGCATCTCTCCA 60.078 57.895 0.00 0.00 39.83 3.86
2776 2997 3.782443 GGCCTACCACACCCTCCG 61.782 72.222 0.00 0.00 35.26 4.63
2811 3032 0.179124 TTGACAACCGCAACCAAAGC 60.179 50.000 0.00 0.00 0.00 3.51
2813 3034 0.457851 CCTTGACAACCGCAACCAAA 59.542 50.000 0.00 0.00 0.00 3.28
2829 3050 1.341156 CGATCTGGCCCCTCTTCCTT 61.341 60.000 0.00 0.00 0.00 3.36
2840 3061 0.032130 TCTAATGACCGCGATCTGGC 59.968 55.000 8.23 0.00 0.00 4.85
2850 3071 1.421410 CGGCGCACACTCTAATGACC 61.421 60.000 10.83 0.00 0.00 4.02
2856 3077 2.875485 GAGACGGCGCACACTCTA 59.125 61.111 10.83 0.00 0.00 2.43
2864 3085 3.335534 ACAACAACGAGACGGCGC 61.336 61.111 6.90 0.00 33.86 6.53
2903 3124 1.947456 TGTATCTCATCGTCTCCACCG 59.053 52.381 0.00 0.00 0.00 4.94
2905 3126 3.130516 TGGTTGTATCTCATCGTCTCCAC 59.869 47.826 0.00 0.00 0.00 4.02
2906 3127 3.130516 GTGGTTGTATCTCATCGTCTCCA 59.869 47.826 0.00 0.00 0.00 3.86
2913 3134 2.798499 CGTCCGGTGGTTGTATCTCATC 60.798 54.545 0.00 0.00 0.00 2.92
2914 3135 1.136305 CGTCCGGTGGTTGTATCTCAT 59.864 52.381 0.00 0.00 0.00 2.90
2934 3155 1.263484 CAGCAGATCGATTGGTGCATC 59.737 52.381 22.69 0.00 38.44 3.91
2946 3167 1.678101 GCCACATAAACCCAGCAGATC 59.322 52.381 0.00 0.00 0.00 2.75
2973 3194 4.933064 CCTCCATCGCTCCGACGC 62.933 72.222 0.00 0.00 39.18 5.19
2974 3195 3.518998 ACCTCCATCGCTCCGACG 61.519 66.667 0.00 0.00 39.18 5.12
2975 3196 2.105128 CACCTCCATCGCTCCGAC 59.895 66.667 0.00 0.00 39.18 4.79
2976 3197 2.362503 ACACCTCCATCGCTCCGA 60.363 61.111 0.00 0.00 41.13 4.55
3043 3264 8.765219 CATGACTCACTTATAAAGATTTACCGG 58.235 37.037 0.00 0.00 0.00 5.28
3048 3269 8.391106 GCGAACATGACTCACTTATAAAGATTT 58.609 33.333 0.00 0.00 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.