>input_sequence_60849
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-------------------------------------------ATGGTATTCCTT-GAGGACGACAGAATCCATAAAGAT
CGGTTCCTCATGGCCATCGGCCTGGGCACTCCGGCCATTATGAACCTCGTCACCATCGACACCGGCTCGACACTTTCCTG
GGTTCAGTGCCGACCTTGTCCGATAAATTGCCATGATCAAGCTGAAGAGTCCGGACGGATATTTGACCCCCTTCAGTCCT
CAACTTACCAAAGCGTTGGCTGCTCAACTGAAGATTGTGGTTATGTGCATGAAACACTTGGTATTCCCTTTTGCTGCAAC
GAGGAGCAAGATAGCTGCCTTTACAGCTTGAGATATGCATCAGAAGAGTACACGGCCGGAAGCTTGGTCAAGGACAAGCT
CACATTAGGAAACAACTTCAGCATTGATGATTTCATGTTTGGCTGCAGTGGAGATGACAGGTACAATGCAGCTGATGCAG
GCATTATTGGATTTGGGGGTGAGACTTACTCCTTCTTTCGTCAGGTAGTTCGCCATACCAACTACACCACGTTCTCTCAC
TGCTTTCCTGGTAATCATAGAAACGGAGGATTTCTATCCATCGGGCCGTATGATCGGTACAATTTACAGTTCATTCCGTT
GGTCGAATACGGCTCGCACGGAGATAACCCGGCGTATGCTATTCAGCAGCTGGACATGATGGTCGACGGGATACGGCTTG
AAGTCGACCCGTCAATCTACGCAACTCGAATGACGATACTGGATTCTGGCACGATCGACACGTTCATTCTGTCCCCGGTG
TTTCGTGCGTTTGACAAGGCGATCACAGCGGCAATGCTAGCAAAGGGATATGCCCGAGAAGCAGCTGGAAGGAATAAAAT
TTGTTTCACGTCCACTAGTGATTCGGTGAACTGGAGAGACATGCCAACGGTGGAGATGAAATTTGTAAGGTCTATCTTGA
AGCTCCCGTCAGAGAATGTGTTCTATCGAGTGTCAGCAGATAAAATTTGCTCCACATTTCGGCCAGACGTTGCTGGACTG
ACAGGGGTTCCGATTCTGGGGAACAGGGAAACAAGATCATTCAGGGTCGTGTATGATATCCAAGACAGCAAGTTTGGGTT
TCAAGCTGGCGCGTGTTGA-------------------------------------------------------------
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>chr5B_1_TraesCS5B01G065800
ATCTCAGGATTACAGCCTTAATTAACTGATGCAATGCAACAGCTGACTTGTGATAACTTCTTCTT---------------
------TTCCCCAGATGTTTTCCATTTTGTTTACCTATACTTCG------------------------------------
-----CAAAACTCCTATATGAATTACCTTGCCTGTATCAAGTTTTTCTTTTTACCGTTTCCGATTTTCCCTGATGGTGGC
CGGAAACGGCGGTTTCCCG-----GTCAATTTTCGTCCAAAATCATTTGAAAATTTTCAAAGTTCGATCAATTTTTTTGA
ATTTGGGCAAAAATTGTAAAACTGTCTGGTATTTCTCCTACCGGTTCTGGCCAGAAAGACCGGTTTCCGGATTTCTTTGA
CCG-AATGAAAAACCCTGGCCGTATTAGTTACCAAAAGATCTGCACAGTAATAATATAGTTTTGGGTCCCAATAACATTT
TCCATGCTAATAATTTTGTTACTGAGCATATTGTATCTATTATA------------------------------------
----------------------------------------------------GTAAGCAGTGTTATAGGCA----TGACT
GGGTAGGTGGTGAGCTTGTTTTGCATGTCTCTAAGCAACTAGAGTACATATTGCCTGGTGAAGTTTTATGAAGCAAAGTT
TCTCTGGAGAATAACATTAGGCATGGAGTACT---TGATTCTCATTATGCTTGCACTAAGCTATACGTCTCAGTACTGCA
CCAGCTCTAGCTTATGCCCCTCAACCTACGGTAATGCTCTAGCTCATGCTCCTCATCTCCTATACCCATATATGGTGAAG
TTCAAATTTGTGTTCTGTGAGTTTTCTAAATATTATGTATTGAGTGCATTAACAATGACCAACAGATGAGTTGAGTTAAT
TGTGTGTTGGGTGAATAAATTTCAAAGCTATAGCAGCAGATGCTTGAATTTTATCCTTCTCTCAATTAATAATTACCCAA
TGTGTTATGTCTACTGCTAGCAGATCTTGGTCAGAACGGCGATGGTGCCTTTCAATTCCCAGTGTTCCACGAGATGCACC
CATGCATACAAGCATCAGTACAAGTATCAAATGTACAGAACACATGGTATTCCTT-GAGGACGACAGAATCCATAAAGAT
CGGTTCCTCATGGCCATCGGCCTGGGCACTCCGGCCATTATGAACCTCGTCACCATCGACACCGGCTCGACACTTTCCTG
GGTTCAGTGCCGACCTTGTCCGATAAATTGCCATGATCAAGCTGAAGAGTCCGGACGGATATTTGACCCCCTTCAGTCCT
CAACTTACCAAAGCGTTGGCTGCTCAACTGAAGATTGTGGTTATGTGCATGAAACACTTGGTATTCCCTTTTGCTGCAAC
GAGGAGCAAGATAGCTGCCTTTACAGCTTGAGATATGCATCAGAAGAGTACACGGCCGGAAGCTTGGTCAAGGACAAGCT
CACATTAGGAAACAACTTCAGCATTGATGATTTCATGTTTGGCTGCAGTGGAGATGACAGGTACAATGCAGCTGATGCAG
GCATTATTGGATTTGGGGGTGAGACTTACTCCTTCTTTCGTCAGGTAGTTCGCCATACCAACTACACCACGTTCTCTCAC
TGCTTTCCTGGTAATCATAGAAACGGAGGATTTCTATCCATCGGGCCGTATGATCGGTACAATTTACAGTTCATTCCGTT
GGTCGAATACGGCTCGCACGGAGATAACCCGGCGTATGCTATTCAGCAGCTGGACATGATGGTCGACGGGATACGGCTTG
AAGTCGACCCGTCAATCTACGCAACTCGAATGACGATACTGGATTCTGGCACGATCGACACGTTCATTCTGTCCCCGGTG
TTTCGTGCGTTTGACAAGGCGATCACAGCGGCAATGCTAGCAAAGGGATATGCCCGAGAAGCAGCTGGAAGGAATAAAAT
TTGTTTCACGTCCACTAGTGATTCGGTGAACTGGAGAGACATGCCAACGGTGGAGATGAAATTTGTAAGGTCTATCTTGA
AGCTCCCGTCAGAGAATGTGTTCTATCGAGTGTCAGCAGATAAAATTTGCTCCACATTTCGGCCAGACGTTGCTGGACTG
ACAGGGGTTCCGATTCTGGGGAACAGGGAAACAAGATCATTCAGGGTCGTGTATGATATCCAAGACAGCAAGTTTGGGTT
TCAAGCTGGCGCGTGTTGACACAGT-----TACATGGCTACCTGGAGCAGACAAGACTAT-ATATTTTGATGTACAAACT
GATGAAGGTCCTCAGTATTGATTGGTGTTGGTACTGGATTAACAGTGCATCTATGTTGTGTGCCTTTTTTGTTTTCTAAA
TATACAATCATATAAGTATTTGCAGCAGTGGTAGGAATCATAAGTTCATAAGGATGTTAATTGATTCCCAGAAATCTCTG
GCGTTTCAATCCCTGGCCGCCCGGCTTTTATAAGCTTGAGCAGGATCTGGATTTTATATGGTGTCTCAGCTAGTTTTGGC
GTTTTAGGTTTCGCGGACATACACTATAATTTCTACATTTTTACACGACAATTTCAGCATTTTTAAGCCATTCATAGACA
ATATTCCTACAAATGCAGCCAATAAGAGTCAATGCATGATCACATAGGGGAATCCTGATGCTCCGTCTTCGGTCAGTATA
GGTTAAAATTTTAGTCCTTGTTGTGAGATAAGAGAGCACGGTCGATGTGGCT----------------------------
-------------------TCGTGTTTCGTAGGTCATCCGCGATCCGCGAGACGACGGGAGCAAATTTGTTGCTGAGGCC
ACATACCATATTGGAGACGAGAGCCCGATCGGAGACAGGCATGCCATAGTCC--CGGAGCGTGTCGCCAACACTTTGATG
CGTGTGAAGTAGGCGTTGATGGAGAGATGCT-TTGGCGGAGGGTGTGGTAGGCCTCGGGTGCCTGGCAGCCGCTTTGGTT
GCGGTTGTCAAGGAAGAGGGGCCAGATCGCGGTCATTAGAGTGTGCGCCGTCTCGTTGTTGTGTTGGACGGACTGCATGA
TCTCGGTGGAGACGATGAGATACAACCACCGGACGATGCACCAATCGATCTGCTGGGTTTATGTGGCGTCGCCGCGTCGG
AGCGATGGAGGTGTCCAACAAGATCTTAATATAATTTTTATATGTTAGGTTGCTTTCGTATTTCCGGTAAATCTTTATAA
GTGAGTCATGTTCGCAAAAA-ACAATGATCACATAA
>chr5D_1
ATCTCAGGATTACAGCCTTAC----CTGATGCAATGCAACAGCTGACTTGTGATAACTTCTTCTTTTAAAATTCAAACTA
CTTCTTTTCCCCAGATGTTTTCCATTTTGTTTACCTATGCTTATTAGTTAAAGAAGAACACACAATGGAATTTCAGTCAC
TGATACAAAACTCTTATATGACTTACCTTGCC------------------------------------------------
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--------------------CGTATTAGTTACCAGTAGATCCGCACAATT----TATAGTTTTAGGCCCCAATAACATTT
TCCTTCCTAATAATTTTGTTAGTGAGCATATGCCATCTATTATACTCCCTCCATAAAGAAATATATAAGAACATTTATAT
CACTACTTTAGTGATCTAAACGCTCTTGTATTTCTTCACAGAGGGAGTACTAGTTAGCAGTGTGGTAAGCATGCATGACT
GGGTAGGTGCTGAGCTTGTTTTGCATGTCTCTAAGCC-----AGTACATATTGCCTGGTGAAGTTCTATGAAGCAAAGTT
TCTTCAGAGAATAATATTAGCCATGGAGTACT---TGATTCTCATGATGCTTGCACTAAGCTATACGTCTCAGTACTGCA
CCAGCTCTAGCTTATGCCCCTCAACCTACGGTAATCTTCTAGCTCATGCTCCTCATCTCCTATACC----TATGGTGAAG
TTCAAGTCTGTTTTCTACGATTTTTCCAAATATTATGTACTGCGTGCATTAACAGTGGCTAACAGATGAGTGGAGTTAAT
TATGTGTTGGGTAAATTAAATTCAAAGCTATA---GCAGTAAGATG----------------------------------
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>chr5A_102
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------------------------------------------CG------------------------------------
-----CAAAACTCCTATATAAATTACCTTGCCTATATCAAGTTTTACTTTTTACTGTTTCCGATTTTCCCCGATGGTGGC
CAGAAACGACGGTTTCCCGGCCCAGTCAATTTTCATCCAAAATCATTTGAAAAATTTCAAAGTTTGATCAATTTTTTTGA
ATTTGGGCAAAACTTGTAAAACTGTCTGGTATTTCAACTACCGGTGCTGGCCAGAAAGGCCGGTTTCCGGATTTCTTTGA
CCGGAATAAAAAACCCTGGCCATATTAGTTACAAAAATATCTTCACAGTAATAATTTAGTTTTAGGTCCCAATAACATTT
TCCATGCTAATAATTTTGTTACTGAGCATATGGTATCTATTAATGA----------------------------------
------------------------------------------------------AAGCAGTGTCATAGGCA----TGACT
GGGTAGGTGGTGAGCTTGTTTTGCATGTCTCTAAGAAACTAGAGTACATATTGCCTGGTGAAGTTTTATCAAGCAAAGTT
TCTCTGGAGAATAACATTAGGCATGGAGTACTACTTGATTCTCATGATGCTTGCACTAAGCTATACGTCTCAGTACTGCG
CCAGCTCTAGCTTATGCCCCTCAACCTACGGTAATGCTCTAGCTCATGCTCCTCATCTCCTATACC----TATGGTGAAG
TTCAAGTTTGTGTTCTGTGAGTTTTCTAAATATTATGTATTGAGTGCATTAACAATGACTAACAGATGAGTGGAGTTAAT
TATGTGTTGGGTGAATTAAATTCAAATCTATA---GCAGATGCTTGAATTTTATCCTTCTCTGAATTAATAATTACCCAA
TGTGTTATGTCTACTGCTAGCAGATTTTGGTCAGAACGGCGATGGTGCCTTTCAATTCCCAGTGTTCCATGAGATGCATC
CATGCATACAAGCATCAGCACATATAGCAAATGTACAGGAAACATGGTATTCCTTTGAGGACGACAGAATCCATAAAGAT
CGGTTCCTCATGGCCATCGGTCTGGGCACTCCCGCCATTATGAATCTCGTCACCATTGACAGCGGATCGGCACTTTCCTG
GGTTCAGTGCCGACCTTGTCCGATAAGATGCCATAATCAAGATGAAGAGGCCGGACGGATATTTGAGCCCCATCAGTCCT
CAACTTACCAAAGCGTTGGCTGCTCAACTGAAGATTGTGGTTATGTGCATGAAACACTTGGTATTCCCTTTGGCTGCAAC
GAGGAGCAAGATAGCTGCCTTTACAGCTTGAGATATGCATCAGAAGAGTACACAGCCGGAAGCTTGGCCAAGGACAAGCT
CACTTTAGGAAACAACTTCAGCATTGATGATTTCTTGTTTGGCTGCAGTGGAGATGACAGGTACAATGCAGCTGATGCAG
GCATTATTGGATTTGGGGGTGCGAGTTACTCCTTCTTTCTTCAGGTAGTTCGTCATACGAACTACACTGCATTTTCACAC
TGCTTTCCTGGTAATAATAGAAATGGAGGTTTTCTATCCATCGGACCGTATGATCGGTTCAATTTACAGTTCATTCCGTT
GGTCGAATATGGCTCGCATGGCGATAACCCGGTGTATGCTCTTCAGCAGCTGGACATGTTAGTCAACGGGATACGGCTTG
AAGTCGACCCGTCAGTCTACGCAACTCGAATGACAATACTGGATTCTGGCACGATCGACACGTTCATTCTGTCCCCGGTG
TTTCGTGCATTTGACAAGGCGATCACAGCGGCAATGCTAGCTAAGGGATATGCCCGAGAAGCAGCTGGAAAGAATGAAAT
CTGTTTCACGTCCACTAGTGATTCAGCGAACTGGCGTGACATGCCAACGGTGGAGATGAAATTTGTAAGGTCTACCTTGA
AGCTCCCGTCAGAGAATGTGTTCTATCGAGTGTCAGCAGATAAAATTTGCTCCACATTTCGGCCAGATGTTGCCGGACTG
ACAGGGGTTCCAATTCTGGGGAACAGGGCAACAAGATCATTCAGGGTCGTGTATGATATCCAAGACAGCAAGTTTGGGTT
TCAAGCTGGTGCTTGTTGACACAGGTGGAGTACATGGCTACCTGGAGCAGACAAGACTAT-ATATTTTGATGTACAAACT
GATGAAGGTCCTCAGTATTGATTGGTGTTGGTACTGGATTAACAGTGCACCTATGTTGTGTGCCTTTTTTGTTTTCTAAA
T-------------------------------------------------------------------------------
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>chr5D_840
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------------------------------------------CTTGTATTTAATCCTTCTCCGAAATATTAATTATTGAA
----TTATATCTACTGCTAGCAGATCTTGGTCAGACTGGCGCTGGTGCCTTTCAATTCCCGGTGTTCCACGAGAAGCACC
CATGCATACAAGCATCAGTACATATAGCAAATGTACAGAAAACATGGTATTCCTTTGAGGATGACAGAATCCATAAAGAT
CGGTTCCTCATGGCCATTGGTCTGGGCACTCCGGCCTTTGTGAATCTCGTCACCATCGACACCGGCTCAACACTTTCCTG
GGTTCAGTGCCGACCTTGTCCGATAAGATGCCATAATCAAGATGAAGAGGCCGGACGGATATTTGACCCCCTTCAGTCCT
CAACTTACCAAAGCGTTGGCTGCTCAACTGAAGATTGTGGTTATGTGCATGAAACACTTGGTATTCCCTTTGGCTGCAAC
GAGGAGCAAGATAGCTGCCTTTACAGCTTGAGATATGCATCAGAAGAGTACACGGCCGGAAGCTTGGTCAAGGACAAGCT
CACTTTAGGAAACAACTTCAGCATTGATGATTTCATGTTTGGCTGCAGTGGAGATGACAGGTACAATGCAGCTGATGCAG
GCATTATTGGATTTGGGGGTGCGACTTACTCCTTCTTTCGTCAGGTAGTTCGCCATACCAACTACACCGCGTTCTCTCAC
TGCTTTCCTGGTAATCATAGAAACGGAGGGTTTCTATCCATCGGGCCGTATGATCGGTACAGTTTACAGTTCATTCCGTT
GGTCGAGTACGGCTCGCACGGAGATAACCCGGTGTATGCTATTCAGCAGCTGGACATGATGGTCGACGGGATACGGCTTG
AAGTCGACCCGTCAATCTACGCAACTCGAATGACGATACTGGATTCTGGCACGATCGACACGTTCATTCTGTCCCCAGTG
TTTCGTGCGTTTGACAAGACCATCACAGCGGCAATGCTAGCTAAGGGATATGCCCGGGAAACAGCTGGAAGGAATAAAAT
TTGTTTCACATCCACTAGTGATTCAGTGAACTGGCGAGACATGCCAACGGTGGAGATGAAATTTGTAAGGTCTATCTTGA
AGCTCCCGTCAGAGAATGTGTTCTATCGAGTGTCAGCAGATAAAATTTGCTCCACATTTCAGCCAGATGTTGCTGGACTG
ACAGGGGTTCCGATTCTGGGGAACAGGGCAACAAGATCATTCAGGGTCGTGTATGATATCCAAGACAGCAAGTTTGGGTT
TCAAGCTGGTGCTTGTTGACACAG-----GTACATGGCTACCTGGAGCAGACAAGACTATAATATTTTGATGTACAAACT
GATGAAGGTCCTCAGTATTGATTGGTGTTGGTACTGGATTAACAGTGCATCTATGTTGTGTGCCTTTTTTGTTTTCTAAA
TATACAATCATATAAGTGTTCGCA--------------------------------------------------------
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>chrUn_2227
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----------------------------------------------------------------------------TAAA
TATACAATCATATAAGTATTTGCGGCAGTGGTAGGAATCATAAGTTCATAAGGATGTTAATTGATTCCCAGAAATCTCCG
GCGTTTCAATCCCTGGCCGCCCGGCTTTTATAAGCTTGAGCAGGATCTGGATTTTATATGGCGTCTCGGCTAGTTTTGGC
GTTTTAGGTTTCGCGGACATACGCTATAATTTCTACATTTTTACACGACAATTTTAGCATTTTTAAGCCATTCATACACA
ATATTCCTACAAATGCAGCCAATAAGAGTCAACGCATGATCGCACAGGGGAATCCTGATGCTCCGGCTCCGACCAGTATA
GGTTAAAGTTTTAGTCCTAGCTGTGAGATAAGAGAACACGGTCGATGTGGCTCTCCTTGCGCAGCAGGTACGTGTTCTCT
TTGATGAAGGAGGGCAGCTTCGTGTTTTGTAGGTCATCCGCGA-------GACGACGGGAACAGATTTGTTGCTGAGGCC
ACATACCATATTGGAGACGAGAGCCCGGTCGGAGATGGGCATGCCGTAGTCTCTCGGTGCGTGTCGCTAACACTTTGAGG
CGTTTGAAGTAGGTGTTGACGGAGAGATGCTTTTGGTGGAGGGTGTGGTAGGCCTCGAGTGCCTGGCAGCCACATTGGTT
GCGGTTGTCGAGGAAGAGGGACCAGATCGCCGTCATGAGAGTGTACGCCGTCTCGTTGTTGTGTTGGACGGACTGCATGA
TCTAGTCGGAGACAGTGAGATACAACCACCGGACAATGCACCAATCTATCTGCTGGGTCTATGTGGCGC--------CGG
AGCGATGGAGGTGTCCAACAAGACCTTAGTATAATTTTTATATGTTAGGTTGCTTTTGTATTTTCGGTGAATCTTTATAA
GTGAGTCATGTTCGCAAAAACACAATGATCACATAA
>SNPs
--------------------SSSSS-------------------------------------------------------
--------------------------------------S-----------------------------------------
---------------------------------S-----------S--------S---------------S---------
-S------S-------------------------S------------------S----------S---------------
------------S----------------------SS--------S------------S---------------------
-------S-------------------------------------------------------S----------------
-------------------------------S------------------------------------------------
---------------------------------------------------------------S----------------
--------------------------------------------------------------------------------
---------------------------------------------S----------------------------------
------------------------------------------------------------------SSSS----------
-----S-----------------------------------------------------S-----------S--------
-S--------------S--S------------SSS---------------------------S-----------------
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----------------------SS--S-------------S---------------------------------------
--------------------S-----------------------S-----------------------------------
--------------------------SS------S------S-------S------------------------------
-----------------------------------------------------------------------S--------
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---S----------------------------------------------------------------------------
---------------------S----------------------------------------------S-----------
-----------------------------S--------------------------------------------------
--------------------------------S-----------------------------------------------
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-----------------------------------------S--------------------------------------
------------------------S---------S---------------------------------------------
-------------------------------------------------------------------S------------
----------------------------S---------------------------------------------------
---------S--S-----------S-------------------------------------------------------
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------------------------------------------------------------------------------S-
-------------------------------------------------------------S-----S------------
----------------------S-------------------------------S---------------------S---
--------------------------------S--------S--S--------------------S--S--SS-------
-------S----------S-S--------------S--------------------------------------------
---------------------------S---------------SSSSSSS----------S--S----------------
---------------------------S-------SS--------S-----S-----S---------S----------S-
---S---------S-----S----------------S--------------------S-------------S-S------
---------S----------S---------S-----S-------S-----------------------------------
---S-SS------SS-------------------S-----------S-----------S---------SSSSSSSSS---
-----------------------S----S---------------------------S------S----S-----------
------------------------------------
>forward_242
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--------------------------------------------------------------ATTTTCCCTGATGGTGGC
CG------------------------------------------------------------------------------
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>reverse_2035
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----------------------------------AGAGACATGCCAACGGTGG---------------------------
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>forward_1307
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-------TGCCGACCTTGTCCGATAAA-----------------------------------------------------
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>reverse_3061
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--------------------GCCAGATCGCGGTCATTAGA----------------------------------------
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