Multiple sequence alignment - TraesCS5B01G041300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G041300 chr5B 100.000 2765 0 0 1 2765 45533948 45536712 0.000000e+00 5107.0
1 TraesCS5B01G041300 chr5B 81.184 946 143 13 748 1665 45540969 45541907 0.000000e+00 728.0
2 TraesCS5B01G041300 chr5B 97.949 195 4 0 1 195 166828900 166829094 3.410000e-89 339.0
3 TraesCS5B01G041300 chr5B 96.954 197 6 0 1 197 341141814 341141618 5.710000e-87 331.0
4 TraesCS5B01G041300 chr5B 86.957 207 23 3 2563 2765 45555547 45555753 2.140000e-56 230.0
5 TraesCS5B01G041300 chr5B 89.655 145 10 4 1663 1802 252966241 252966385 2.190000e-41 180.0
6 TraesCS5B01G041300 chr5B 91.406 128 11 0 2414 2541 45541905 45542032 2.830000e-40 176.0
7 TraesCS5B01G041300 chr5B 93.333 45 3 0 212 256 18396566 18396522 1.780000e-07 67.6
8 TraesCS5B01G041300 chr5D 92.199 1346 76 12 334 1669 45484400 45485726 0.000000e+00 1877.0
9 TraesCS5B01G041300 chr5D 80.907 948 153 12 749 1669 45492029 45492975 0.000000e+00 723.0
10 TraesCS5B01G041300 chr5D 92.898 352 17 1 2414 2765 45485720 45486063 3.180000e-139 505.0
11 TraesCS5B01G041300 chr5D 87.324 355 34 4 2414 2765 45499571 45499917 2.000000e-106 396.0
12 TraesCS5B01G041300 chr5D 86.761 355 36 5 2414 2765 45492969 45493315 4.320000e-103 385.0
13 TraesCS5B01G041300 chr5A 91.607 1251 85 8 432 1664 36362406 36363654 0.000000e+00 1711.0
14 TraesCS5B01G041300 chr5A 91.453 351 22 1 2414 2764 36363653 36363995 2.490000e-130 475.0
15 TraesCS5B01G041300 chr5A 87.786 262 21 3 2423 2681 36368468 36368721 2.080000e-76 296.0
16 TraesCS5B01G041300 chr5A 87.640 89 9 1 353 439 36333586 36333674 4.870000e-18 102.0
17 TraesCS5B01G041300 chr6A 99.335 752 5 0 1663 2414 506187844 506187093 0.000000e+00 1362.0
18 TraesCS5B01G041300 chr6B 97.959 196 4 0 1 196 154431563 154431758 9.480000e-90 340.0
19 TraesCS5B01G041300 chr6B 96.410 195 7 0 1 195 343195139 343195333 3.440000e-84 322.0
20 TraesCS5B01G041300 chr6B 93.878 49 3 0 211 259 369835061 369835109 1.060000e-09 75.0
21 TraesCS5B01G041300 chr6B 91.837 49 4 0 210 258 495435907 495435859 4.940000e-08 69.4
22 TraesCS5B01G041300 chr6B 89.583 48 5 0 212 259 25432806 25432853 8.270000e-06 62.1
23 TraesCS5B01G041300 chr6B 89.583 48 5 0 212 259 25458098 25458145 8.270000e-06 62.1
24 TraesCS5B01G041300 chr4B 96.970 198 6 0 1 198 110662535 110662732 1.590000e-87 333.0
25 TraesCS5B01G041300 chr3B 96.500 200 7 0 1 200 254041675 254041476 5.710000e-87 331.0
26 TraesCS5B01G041300 chr3B 94.660 206 11 0 1 206 606124133 606123928 1.240000e-83 320.0
27 TraesCS5B01G041300 chr2B 96.923 195 6 0 1 195 39519961 39520155 7.380000e-86 327.0
28 TraesCS5B01G041300 chr7B 96.000 200 8 0 1 200 621883274 621883075 2.660000e-85 326.0
29 TraesCS5B01G041300 chr1D 88.966 145 11 4 1663 1802 426928222 426928366 1.020000e-39 174.0
30 TraesCS5B01G041300 chr1B 94.118 51 3 0 209 259 214173676 214173726 8.210000e-11 78.7
31 TraesCS5B01G041300 chr4D 90.000 50 5 0 210 259 53773490 53773539 6.390000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G041300 chr5B 45533948 45536712 2764 False 5107 5107 100.0000 1 2765 1 chr5B.!!$F1 2764
1 TraesCS5B01G041300 chr5B 45540969 45542032 1063 False 452 728 86.2950 748 2541 2 chr5B.!!$F5 1793
2 TraesCS5B01G041300 chr5D 45484400 45486063 1663 False 1191 1877 92.5485 334 2765 2 chr5D.!!$F2 2431
3 TraesCS5B01G041300 chr5D 45492029 45493315 1286 False 554 723 83.8340 749 2765 2 chr5D.!!$F3 2016
4 TraesCS5B01G041300 chr5A 36362406 36363995 1589 False 1093 1711 91.5300 432 2764 2 chr5A.!!$F3 2332
5 TraesCS5B01G041300 chr6A 506187093 506187844 751 True 1362 1362 99.3350 1663 2414 1 chr6A.!!$R1 751

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
72 73 0.039035 CCCCTTTGACCGGATGGAAA 59.961 55.0 9.46 0.0 39.21 3.13 F
122 123 0.107848 CTAACGGCGGAGGGACATTT 60.108 55.0 13.24 0.0 0.00 2.32 F
1087 1107 0.170116 GATCTCGCTAGCATCCTCCG 59.830 60.0 16.45 0.0 0.00 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1196 1216 0.033504 AGGCAGTGACGGTGTTGTAG 59.966 55.0 0.00 0.0 0.00 2.74 R
1544 1606 0.179215 CACGGTCTTGAGCGATTTGC 60.179 55.0 25.45 0.0 46.98 3.68 R
2653 2718 0.028902 AACCGCAAGTTCTTTGTCGC 59.971 50.0 0.00 0.0 39.08 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.757099 GGCACATGGAGGCAAGGG 60.757 66.667 8.75 0.00 0.00 3.95
18 19 3.455469 GCACATGGAGGCAAGGGC 61.455 66.667 0.00 0.00 40.13 5.19
19 20 2.036098 CACATGGAGGCAAGGGCA 59.964 61.111 0.00 0.00 43.71 5.36
20 21 1.607178 CACATGGAGGCAAGGGCAA 60.607 57.895 0.00 0.00 43.71 4.52
21 22 1.155859 ACATGGAGGCAAGGGCAAA 59.844 52.632 0.00 0.00 43.71 3.68
22 23 0.471591 ACATGGAGGCAAGGGCAAAA 60.472 50.000 0.00 0.00 43.71 2.44
23 24 0.906775 CATGGAGGCAAGGGCAAAAT 59.093 50.000 0.00 0.00 43.71 1.82
24 25 0.906775 ATGGAGGCAAGGGCAAAATG 59.093 50.000 0.00 0.00 43.71 2.32
25 26 0.471591 TGGAGGCAAGGGCAAAATGT 60.472 50.000 0.00 0.00 43.71 2.71
26 27 0.247460 GGAGGCAAGGGCAAAATGTC 59.753 55.000 0.00 0.00 43.71 3.06
27 28 0.247460 GAGGCAAGGGCAAAATGTCC 59.753 55.000 0.00 0.00 44.07 4.02
28 29 0.471591 AGGCAAGGGCAAAATGTCCA 60.472 50.000 3.53 0.00 46.77 4.02
29 30 0.396060 GGCAAGGGCAAAATGTCCAA 59.604 50.000 3.53 0.00 46.77 3.53
30 31 1.511850 GCAAGGGCAAAATGTCCAAC 58.488 50.000 3.53 0.00 46.77 3.77
31 32 1.202627 GCAAGGGCAAAATGTCCAACA 60.203 47.619 3.53 0.00 46.77 3.33
32 33 2.744494 GCAAGGGCAAAATGTCCAACAA 60.744 45.455 3.53 0.00 46.77 2.83
33 34 3.539604 CAAGGGCAAAATGTCCAACAAA 58.460 40.909 3.53 0.00 46.77 2.83
34 35 3.192541 AGGGCAAAATGTCCAACAAAC 57.807 42.857 3.53 0.00 46.77 2.93
35 36 1.864082 GGGCAAAATGTCCAACAAACG 59.136 47.619 0.00 0.00 42.98 3.60
36 37 1.260297 GGCAAAATGTCCAACAAACGC 59.740 47.619 0.00 0.00 0.00 4.84
37 38 1.260297 GCAAAATGTCCAACAAACGCC 59.740 47.619 0.00 0.00 0.00 5.68
38 39 1.864082 CAAAATGTCCAACAAACGCCC 59.136 47.619 0.00 0.00 0.00 6.13
39 40 0.391228 AAATGTCCAACAAACGCCCC 59.609 50.000 0.00 0.00 0.00 5.80
40 41 1.801309 AATGTCCAACAAACGCCCCG 61.801 55.000 0.00 0.00 0.00 5.73
41 42 2.903350 GTCCAACAAACGCCCCGT 60.903 61.111 0.00 0.00 43.97 5.28
42 43 1.597578 GTCCAACAAACGCCCCGTA 60.598 57.895 0.00 0.00 39.99 4.02
43 44 1.301874 TCCAACAAACGCCCCGTAG 60.302 57.895 0.00 0.00 39.99 3.51
44 45 1.301874 CCAACAAACGCCCCGTAGA 60.302 57.895 0.00 0.00 39.99 2.59
45 46 1.571215 CCAACAAACGCCCCGTAGAC 61.571 60.000 0.00 0.00 39.99 2.59
46 47 1.665599 AACAAACGCCCCGTAGACG 60.666 57.895 0.00 0.00 39.99 4.18
56 57 4.584688 CGTAGACGGTCAAACCCC 57.415 61.111 11.27 0.00 33.75 4.95
57 58 1.969862 CGTAGACGGTCAAACCCCT 59.030 57.895 11.27 0.00 33.75 4.79
58 59 0.319405 CGTAGACGGTCAAACCCCTT 59.681 55.000 11.27 0.00 33.75 3.95
59 60 1.270465 CGTAGACGGTCAAACCCCTTT 60.270 52.381 11.27 0.00 33.75 3.11
60 61 2.148768 GTAGACGGTCAAACCCCTTTG 58.851 52.381 11.27 0.00 38.56 2.77
61 62 0.841289 AGACGGTCAAACCCCTTTGA 59.159 50.000 11.27 0.00 42.93 2.69
65 66 4.911901 TCAAACCCCTTTGACCGG 57.088 55.556 0.00 0.00 40.76 5.28
66 67 2.232622 TCAAACCCCTTTGACCGGA 58.767 52.632 9.46 0.00 40.76 5.14
67 68 0.774908 TCAAACCCCTTTGACCGGAT 59.225 50.000 9.46 0.00 40.76 4.18
68 69 0.887933 CAAACCCCTTTGACCGGATG 59.112 55.000 9.46 0.00 39.43 3.51
69 70 0.251608 AAACCCCTTTGACCGGATGG 60.252 55.000 9.46 1.96 42.84 3.51
70 71 1.137594 AACCCCTTTGACCGGATGGA 61.138 55.000 9.46 0.00 39.21 3.41
71 72 1.137594 ACCCCTTTGACCGGATGGAA 61.138 55.000 9.46 0.00 39.21 3.53
72 73 0.039035 CCCCTTTGACCGGATGGAAA 59.961 55.000 9.46 0.00 39.21 3.13
73 74 1.173913 CCCTTTGACCGGATGGAAAC 58.826 55.000 9.46 0.00 39.21 2.78
74 75 0.802494 CCTTTGACCGGATGGAAACG 59.198 55.000 9.46 0.00 39.21 3.60
92 93 3.266240 GGAACGGAAGGGCATTTCT 57.734 52.632 0.00 0.00 0.00 2.52
93 94 0.811281 GGAACGGAAGGGCATTTCTG 59.189 55.000 7.91 7.91 38.99 3.02
94 95 1.534729 GAACGGAAGGGCATTTCTGT 58.465 50.000 8.99 8.99 46.02 3.41
95 96 2.617021 GGAACGGAAGGGCATTTCTGTA 60.617 50.000 13.63 0.00 43.93 2.74
96 97 2.871096 ACGGAAGGGCATTTCTGTAA 57.129 45.000 12.15 0.00 43.13 2.41
97 98 2.711542 ACGGAAGGGCATTTCTGTAAG 58.288 47.619 12.15 0.00 43.13 2.34
98 99 2.017049 CGGAAGGGCATTTCTGTAAGG 58.983 52.381 0.00 0.00 0.00 2.69
99 100 2.379005 GGAAGGGCATTTCTGTAAGGG 58.621 52.381 0.00 0.00 0.00 3.95
100 101 1.751351 GAAGGGCATTTCTGTAAGGGC 59.249 52.381 0.00 0.00 41.81 5.19
101 102 0.704076 AGGGCATTTCTGTAAGGGCA 59.296 50.000 7.44 0.00 44.04 5.36
102 103 0.817654 GGGCATTTCTGTAAGGGCAC 59.182 55.000 7.44 0.00 44.04 5.01
115 116 4.832608 GGCACCTAACGGCGGAGG 62.833 72.222 23.63 23.63 38.92 4.30
116 117 4.832608 GCACCTAACGGCGGAGGG 62.833 72.222 27.15 19.73 37.14 4.30
117 118 3.072468 CACCTAACGGCGGAGGGA 61.072 66.667 27.15 2.28 37.14 4.20
118 119 3.073101 ACCTAACGGCGGAGGGAC 61.073 66.667 27.15 0.00 37.14 4.46
119 120 3.072468 CCTAACGGCGGAGGGACA 61.072 66.667 19.19 0.00 0.00 4.02
120 121 2.432300 CCTAACGGCGGAGGGACAT 61.432 63.158 19.19 0.00 0.00 3.06
121 122 1.520666 CTAACGGCGGAGGGACATT 59.479 57.895 13.24 0.00 0.00 2.71
122 123 0.107848 CTAACGGCGGAGGGACATTT 60.108 55.000 13.24 0.00 0.00 2.32
123 124 0.325602 TAACGGCGGAGGGACATTTT 59.674 50.000 13.24 0.00 0.00 1.82
124 125 0.538746 AACGGCGGAGGGACATTTTT 60.539 50.000 13.24 0.00 0.00 1.94
125 126 1.241315 ACGGCGGAGGGACATTTTTG 61.241 55.000 13.24 0.00 0.00 2.44
126 127 0.958382 CGGCGGAGGGACATTTTTGA 60.958 55.000 0.00 0.00 0.00 2.69
127 128 0.811281 GGCGGAGGGACATTTTTGAG 59.189 55.000 0.00 0.00 0.00 3.02
128 129 0.171231 GCGGAGGGACATTTTTGAGC 59.829 55.000 0.00 0.00 0.00 4.26
129 130 1.533625 CGGAGGGACATTTTTGAGCA 58.466 50.000 0.00 0.00 0.00 4.26
130 131 1.470098 CGGAGGGACATTTTTGAGCAG 59.530 52.381 0.00 0.00 0.00 4.24
131 132 1.821136 GGAGGGACATTTTTGAGCAGG 59.179 52.381 0.00 0.00 0.00 4.85
132 133 1.203287 GAGGGACATTTTTGAGCAGGC 59.797 52.381 0.00 0.00 0.00 4.85
133 134 1.203100 AGGGACATTTTTGAGCAGGCT 60.203 47.619 0.00 0.00 0.00 4.58
134 135 1.620323 GGGACATTTTTGAGCAGGCTT 59.380 47.619 0.00 0.00 0.00 4.35
135 136 2.037641 GGGACATTTTTGAGCAGGCTTT 59.962 45.455 0.00 0.00 0.00 3.51
136 137 3.494924 GGGACATTTTTGAGCAGGCTTTT 60.495 43.478 0.00 0.00 0.00 2.27
137 138 3.495753 GGACATTTTTGAGCAGGCTTTTG 59.504 43.478 0.00 0.00 0.00 2.44
138 139 4.370917 GACATTTTTGAGCAGGCTTTTGA 58.629 39.130 0.00 0.00 0.00 2.69
139 140 4.768583 ACATTTTTGAGCAGGCTTTTGAA 58.231 34.783 0.00 0.00 0.00 2.69
140 141 5.370679 ACATTTTTGAGCAGGCTTTTGAAT 58.629 33.333 0.00 0.00 0.00 2.57
141 142 5.824097 ACATTTTTGAGCAGGCTTTTGAATT 59.176 32.000 0.00 0.00 0.00 2.17
142 143 6.991531 ACATTTTTGAGCAGGCTTTTGAATTA 59.008 30.769 0.00 0.00 0.00 1.40
143 144 7.172019 ACATTTTTGAGCAGGCTTTTGAATTAG 59.828 33.333 0.00 0.00 0.00 1.73
144 145 4.789012 TTGAGCAGGCTTTTGAATTAGG 57.211 40.909 0.00 0.00 0.00 2.69
145 146 3.091545 TGAGCAGGCTTTTGAATTAGGG 58.908 45.455 0.00 0.00 0.00 3.53
146 147 2.428530 GAGCAGGCTTTTGAATTAGGGG 59.571 50.000 0.00 0.00 0.00 4.79
147 148 1.134699 GCAGGCTTTTGAATTAGGGGC 60.135 52.381 0.00 0.00 0.00 5.80
148 149 2.178580 CAGGCTTTTGAATTAGGGGCA 58.821 47.619 0.00 0.00 0.00 5.36
149 150 2.566724 CAGGCTTTTGAATTAGGGGCAA 59.433 45.455 0.00 0.00 0.00 4.52
150 151 3.007831 CAGGCTTTTGAATTAGGGGCAAA 59.992 43.478 0.00 0.00 0.00 3.68
151 152 3.845992 AGGCTTTTGAATTAGGGGCAAAT 59.154 39.130 0.00 0.00 32.27 2.32
152 153 3.940852 GGCTTTTGAATTAGGGGCAAATG 59.059 43.478 0.00 0.00 32.27 2.32
153 154 4.565444 GGCTTTTGAATTAGGGGCAAATGT 60.565 41.667 0.00 0.00 32.27 2.71
154 155 4.392754 GCTTTTGAATTAGGGGCAAATGTG 59.607 41.667 0.00 0.00 32.27 3.21
155 156 5.792741 CTTTTGAATTAGGGGCAAATGTGA 58.207 37.500 0.00 0.00 32.27 3.58
156 157 5.404466 TTTGAATTAGGGGCAAATGTGAG 57.596 39.130 0.00 0.00 0.00 3.51
157 158 4.046286 TGAATTAGGGGCAAATGTGAGT 57.954 40.909 0.00 0.00 0.00 3.41
158 159 5.186256 TGAATTAGGGGCAAATGTGAGTA 57.814 39.130 0.00 0.00 0.00 2.59
159 160 5.192927 TGAATTAGGGGCAAATGTGAGTAG 58.807 41.667 0.00 0.00 0.00 2.57
160 161 4.862641 ATTAGGGGCAAATGTGAGTAGT 57.137 40.909 0.00 0.00 0.00 2.73
161 162 2.496899 AGGGGCAAATGTGAGTAGTG 57.503 50.000 0.00 0.00 0.00 2.74
162 163 1.004745 AGGGGCAAATGTGAGTAGTGG 59.995 52.381 0.00 0.00 0.00 4.00
163 164 1.463674 GGGCAAATGTGAGTAGTGGG 58.536 55.000 0.00 0.00 0.00 4.61
164 165 1.271926 GGGCAAATGTGAGTAGTGGGT 60.272 52.381 0.00 0.00 0.00 4.51
165 166 2.514803 GGCAAATGTGAGTAGTGGGTT 58.485 47.619 0.00 0.00 0.00 4.11
166 167 2.488153 GGCAAATGTGAGTAGTGGGTTC 59.512 50.000 0.00 0.00 0.00 3.62
167 168 2.159627 GCAAATGTGAGTAGTGGGTTCG 59.840 50.000 0.00 0.00 0.00 3.95
168 169 3.659786 CAAATGTGAGTAGTGGGTTCGA 58.340 45.455 0.00 0.00 0.00 3.71
169 170 3.594603 AATGTGAGTAGTGGGTTCGAG 57.405 47.619 0.00 0.00 0.00 4.04
170 171 1.991121 TGTGAGTAGTGGGTTCGAGT 58.009 50.000 0.00 0.00 0.00 4.18
171 172 2.313317 TGTGAGTAGTGGGTTCGAGTT 58.687 47.619 0.00 0.00 0.00 3.01
172 173 3.489355 TGTGAGTAGTGGGTTCGAGTTA 58.511 45.455 0.00 0.00 0.00 2.24
173 174 3.504906 TGTGAGTAGTGGGTTCGAGTTAG 59.495 47.826 0.00 0.00 0.00 2.34
174 175 3.087031 TGAGTAGTGGGTTCGAGTTAGG 58.913 50.000 0.00 0.00 0.00 2.69
175 176 2.426381 GAGTAGTGGGTTCGAGTTAGGG 59.574 54.545 0.00 0.00 0.00 3.53
176 177 2.042162 AGTAGTGGGTTCGAGTTAGGGA 59.958 50.000 0.00 0.00 0.00 4.20
177 178 1.264295 AGTGGGTTCGAGTTAGGGAC 58.736 55.000 0.00 0.00 0.00 4.46
178 179 0.971386 GTGGGTTCGAGTTAGGGACA 59.029 55.000 0.00 0.00 0.00 4.02
179 180 0.971386 TGGGTTCGAGTTAGGGACAC 59.029 55.000 0.00 0.00 0.00 3.67
180 181 0.971386 GGGTTCGAGTTAGGGACACA 59.029 55.000 0.00 0.00 0.00 3.72
181 182 1.067071 GGGTTCGAGTTAGGGACACAG 60.067 57.143 0.00 0.00 0.00 3.66
182 183 1.672145 GGTTCGAGTTAGGGACACAGC 60.672 57.143 0.00 0.00 0.00 4.40
183 184 1.272769 GTTCGAGTTAGGGACACAGCT 59.727 52.381 0.00 0.00 0.00 4.24
184 185 0.888619 TCGAGTTAGGGACACAGCTG 59.111 55.000 13.48 13.48 0.00 4.24
185 186 0.603569 CGAGTTAGGGACACAGCTGT 59.396 55.000 15.25 15.25 0.00 4.40
186 187 1.816835 CGAGTTAGGGACACAGCTGTA 59.183 52.381 21.20 0.00 0.00 2.74
187 188 2.230508 CGAGTTAGGGACACAGCTGTAA 59.769 50.000 21.20 6.18 0.00 2.41
188 189 3.305813 CGAGTTAGGGACACAGCTGTAAA 60.306 47.826 21.20 4.56 0.00 2.01
189 190 4.638304 GAGTTAGGGACACAGCTGTAAAA 58.362 43.478 21.20 4.93 0.00 1.52
190 191 4.642429 AGTTAGGGACACAGCTGTAAAAG 58.358 43.478 21.20 9.88 0.00 2.27
191 192 4.347000 AGTTAGGGACACAGCTGTAAAAGA 59.653 41.667 21.20 0.41 0.00 2.52
192 193 3.127425 AGGGACACAGCTGTAAAAGAC 57.873 47.619 21.20 7.43 0.00 3.01
193 194 2.152016 GGGACACAGCTGTAAAAGACC 58.848 52.381 21.20 16.08 0.00 3.85
194 195 2.152016 GGACACAGCTGTAAAAGACCC 58.848 52.381 21.20 10.12 0.00 4.46
195 196 2.224548 GGACACAGCTGTAAAAGACCCT 60.225 50.000 21.20 0.00 0.00 4.34
196 197 3.477530 GACACAGCTGTAAAAGACCCTT 58.522 45.455 21.20 0.00 0.00 3.95
197 198 4.504340 GGACACAGCTGTAAAAGACCCTTA 60.504 45.833 21.20 0.00 0.00 2.69
198 199 5.242795 ACACAGCTGTAAAAGACCCTTAT 57.757 39.130 21.20 0.00 0.00 1.73
199 200 5.631119 ACACAGCTGTAAAAGACCCTTATT 58.369 37.500 21.20 0.00 0.00 1.40
200 201 5.705905 ACACAGCTGTAAAAGACCCTTATTC 59.294 40.000 21.20 0.00 0.00 1.75
201 202 5.705441 CACAGCTGTAAAAGACCCTTATTCA 59.295 40.000 21.20 0.00 0.00 2.57
202 203 6.206634 CACAGCTGTAAAAGACCCTTATTCAA 59.793 38.462 21.20 0.00 0.00 2.69
203 204 6.948309 ACAGCTGTAAAAGACCCTTATTCAAT 59.052 34.615 20.16 0.00 0.00 2.57
204 205 7.451566 ACAGCTGTAAAAGACCCTTATTCAATT 59.548 33.333 20.16 0.00 0.00 2.32
205 206 7.756722 CAGCTGTAAAAGACCCTTATTCAATTG 59.243 37.037 5.25 0.00 0.00 2.32
206 207 7.669722 AGCTGTAAAAGACCCTTATTCAATTGA 59.330 33.333 3.38 3.38 0.00 2.57
207 208 7.970614 GCTGTAAAAGACCCTTATTCAATTGAG 59.029 37.037 8.41 0.00 0.00 3.02
208 209 9.231297 CTGTAAAAGACCCTTATTCAATTGAGA 57.769 33.333 8.41 0.72 0.00 3.27
209 210 9.753674 TGTAAAAGACCCTTATTCAATTGAGAT 57.246 29.630 8.41 8.05 0.00 2.75
213 214 9.753674 AAAGACCCTTATTCAATTGAGATAACA 57.246 29.630 8.41 0.00 0.00 2.41
214 215 8.970859 AGACCCTTATTCAATTGAGATAACAG 57.029 34.615 8.41 9.47 0.00 3.16
215 216 8.772250 AGACCCTTATTCAATTGAGATAACAGA 58.228 33.333 8.41 0.00 0.00 3.41
216 217 9.566432 GACCCTTATTCAATTGAGATAACAGAT 57.434 33.333 8.41 0.00 0.00 2.90
223 224 7.921041 TCAATTGAGATAACAGATACTCCCT 57.079 36.000 3.38 0.00 0.00 4.20
224 225 7.957002 TCAATTGAGATAACAGATACTCCCTC 58.043 38.462 3.38 0.00 0.00 4.30
225 226 6.926630 ATTGAGATAACAGATACTCCCTCC 57.073 41.667 0.00 0.00 0.00 4.30
226 227 4.399219 TGAGATAACAGATACTCCCTCCG 58.601 47.826 0.00 0.00 0.00 4.63
227 228 4.141228 TGAGATAACAGATACTCCCTCCGT 60.141 45.833 0.00 0.00 0.00 4.69
228 229 4.805744 AGATAACAGATACTCCCTCCGTT 58.194 43.478 0.00 0.00 0.00 4.44
229 230 4.828387 AGATAACAGATACTCCCTCCGTTC 59.172 45.833 0.00 0.00 0.00 3.95
230 231 1.777941 ACAGATACTCCCTCCGTTCC 58.222 55.000 0.00 0.00 0.00 3.62
231 232 1.006758 ACAGATACTCCCTCCGTTCCA 59.993 52.381 0.00 0.00 0.00 3.53
232 233 2.108168 CAGATACTCCCTCCGTTCCAA 58.892 52.381 0.00 0.00 0.00 3.53
233 234 2.500098 CAGATACTCCCTCCGTTCCAAA 59.500 50.000 0.00 0.00 0.00 3.28
234 235 3.055385 CAGATACTCCCTCCGTTCCAAAA 60.055 47.826 0.00 0.00 0.00 2.44
235 236 3.780850 AGATACTCCCTCCGTTCCAAAAT 59.219 43.478 0.00 0.00 0.00 1.82
236 237 4.966805 AGATACTCCCTCCGTTCCAAAATA 59.033 41.667 0.00 0.00 0.00 1.40
237 238 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
238 239 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
239 240 3.055312 ACTCCCTCCGTTCCAAAATAGAC 60.055 47.826 0.00 0.00 0.00 2.59
240 241 2.093869 TCCCTCCGTTCCAAAATAGACG 60.094 50.000 0.00 0.00 35.44 4.18
243 244 1.734163 CCGTTCCAAAATAGACGGCT 58.266 50.000 0.00 0.00 46.93 5.52
244 245 1.664151 CCGTTCCAAAATAGACGGCTC 59.336 52.381 0.00 0.00 46.93 4.70
245 246 2.343101 CGTTCCAAAATAGACGGCTCA 58.657 47.619 0.00 0.00 32.29 4.26
246 247 2.739913 CGTTCCAAAATAGACGGCTCAA 59.260 45.455 0.00 0.00 32.29 3.02
247 248 3.424433 CGTTCCAAAATAGACGGCTCAAC 60.424 47.826 0.00 0.00 32.29 3.18
248 249 3.695830 TCCAAAATAGACGGCTCAACT 57.304 42.857 0.00 0.00 0.00 3.16
249 250 4.015872 TCCAAAATAGACGGCTCAACTT 57.984 40.909 0.00 0.00 0.00 2.66
250 251 4.394729 TCCAAAATAGACGGCTCAACTTT 58.605 39.130 0.00 0.00 0.00 2.66
251 252 5.553123 TCCAAAATAGACGGCTCAACTTTA 58.447 37.500 0.00 0.00 0.00 1.85
252 253 6.177610 TCCAAAATAGACGGCTCAACTTTAT 58.822 36.000 0.00 0.00 0.00 1.40
253 254 7.332557 TCCAAAATAGACGGCTCAACTTTATA 58.667 34.615 0.00 0.00 0.00 0.98
254 255 7.279313 TCCAAAATAGACGGCTCAACTTTATAC 59.721 37.037 0.00 0.00 0.00 1.47
255 256 7.280205 CCAAAATAGACGGCTCAACTTTATACT 59.720 37.037 0.00 0.00 0.00 2.12
256 257 9.309516 CAAAATAGACGGCTCAACTTTATACTA 57.690 33.333 0.00 0.00 0.00 1.82
257 258 9.880157 AAAATAGACGGCTCAACTTTATACTAA 57.120 29.630 0.00 0.00 0.00 2.24
258 259 8.868635 AATAGACGGCTCAACTTTATACTAAC 57.131 34.615 0.00 0.00 0.00 2.34
259 260 6.276832 AGACGGCTCAACTTTATACTAACA 57.723 37.500 0.00 0.00 0.00 2.41
260 261 6.875076 AGACGGCTCAACTTTATACTAACAT 58.125 36.000 0.00 0.00 0.00 2.71
261 262 6.979238 AGACGGCTCAACTTTATACTAACATC 59.021 38.462 0.00 0.00 0.00 3.06
262 263 6.636705 ACGGCTCAACTTTATACTAACATCA 58.363 36.000 0.00 0.00 0.00 3.07
263 264 7.272978 ACGGCTCAACTTTATACTAACATCAT 58.727 34.615 0.00 0.00 0.00 2.45
264 265 8.418662 ACGGCTCAACTTTATACTAACATCATA 58.581 33.333 0.00 0.00 0.00 2.15
265 266 8.916654 CGGCTCAACTTTATACTAACATCATAG 58.083 37.037 0.00 0.00 0.00 2.23
266 267 9.765795 GGCTCAACTTTATACTAACATCATAGT 57.234 33.333 0.00 0.00 39.41 2.12
317 318 6.729391 TCGGATCTCGAACTGATTAGATAG 57.271 41.667 4.13 0.00 45.86 2.08
318 319 6.231951 TCGGATCTCGAACTGATTAGATAGT 58.768 40.000 4.13 0.00 45.86 2.12
319 320 6.711194 TCGGATCTCGAACTGATTAGATAGTT 59.289 38.462 4.13 0.00 45.86 2.24
320 321 7.228906 TCGGATCTCGAACTGATTAGATAGTTT 59.771 37.037 4.13 0.00 45.86 2.66
321 322 7.863375 CGGATCTCGAACTGATTAGATAGTTTT 59.137 37.037 0.00 0.00 42.43 2.43
322 323 9.535878 GGATCTCGAACTGATTAGATAGTTTTT 57.464 33.333 0.00 0.00 37.27 1.94
324 325 8.616377 TCTCGAACTGATTAGATAGTTTTTCG 57.384 34.615 0.00 0.00 37.27 3.46
325 326 8.242053 TCTCGAACTGATTAGATAGTTTTTCGT 58.758 33.333 0.00 0.00 37.27 3.85
326 327 8.169839 TCGAACTGATTAGATAGTTTTTCGTG 57.830 34.615 0.00 0.00 37.27 4.35
327 328 8.024865 TCGAACTGATTAGATAGTTTTTCGTGA 58.975 33.333 0.00 0.00 37.27 4.35
328 329 8.102716 CGAACTGATTAGATAGTTTTTCGTGAC 58.897 37.037 0.00 0.00 37.27 3.67
329 330 9.141400 GAACTGATTAGATAGTTTTTCGTGACT 57.859 33.333 0.00 0.00 37.27 3.41
331 332 9.790389 ACTGATTAGATAGTTTTTCGTGACTAG 57.210 33.333 0.00 0.00 32.37 2.57
545 546 7.920682 GTGAATATTCGGTATCCAAAGCAAAAT 59.079 33.333 10.80 0.00 0.00 1.82
548 550 9.965824 AATATTCGGTATCCAAAGCAAAATAAG 57.034 29.630 0.00 0.00 0.00 1.73
644 649 6.228616 ACATTTCTCTTACCTCCTAGAAGC 57.771 41.667 0.00 0.00 30.19 3.86
757 762 1.375013 ACCGATGGTAACGTGTGCC 60.375 57.895 0.00 0.00 42.51 5.01
800 806 1.154035 GCAACGTGGCCATGCTTAC 60.154 57.895 25.30 8.43 37.12 2.34
927 935 1.593196 TAGAACACAAGCACACCAGC 58.407 50.000 0.00 0.00 0.00 4.85
947 967 1.000396 CCCTTTCCCTTGCTCCCAG 60.000 63.158 0.00 0.00 0.00 4.45
968 988 4.766891 CAGATCACCTATCTCTTCCTCTCC 59.233 50.000 0.00 0.00 43.42 3.71
1034 1054 0.179032 AACTGCATGTCCACGAACCA 60.179 50.000 0.00 0.00 0.00 3.67
1087 1107 0.170116 GATCTCGCTAGCATCCTCCG 59.830 60.000 16.45 0.00 0.00 4.63
1171 1191 1.218047 GCTAGTGGCATCCGTGACA 59.782 57.895 0.00 0.00 42.40 3.58
1196 1216 1.890979 CTGCATCCCTCGACCATGC 60.891 63.158 10.30 10.30 42.81 4.06
1227 1259 2.359602 CTGCCTCTGCCACCACAG 60.360 66.667 0.00 0.00 39.12 3.66
1353 1397 2.280797 GTGCCTTCACTGTCGCCA 60.281 61.111 0.00 0.00 40.03 5.69
1429 1473 0.737715 GACAGACCTGGTGATCGTGC 60.738 60.000 2.82 0.00 34.19 5.34
1436 1480 0.320683 CTGGTGATCGTGCCTCAACA 60.321 55.000 3.08 0.00 37.98 3.33
1473 1517 3.443045 GCATCCACCCAAGTGCGG 61.443 66.667 0.00 0.00 43.09 5.69
1483 1527 2.031919 AAGTGCGGCCGATTGTCA 59.968 55.556 33.48 14.73 0.00 3.58
1522 1566 1.953686 TCAGCAAGCCCAACAAAGTAC 59.046 47.619 0.00 0.00 0.00 2.73
1535 1597 1.833787 AAAGTACCCACACGGCCGAT 61.834 55.000 35.90 17.41 33.26 4.18
1536 1598 2.202837 GTACCCACACGGCCGATC 60.203 66.667 35.90 8.41 33.26 3.69
1537 1599 2.680707 TACCCACACGGCCGATCA 60.681 61.111 35.90 6.18 33.26 2.92
1538 1600 2.284276 TACCCACACGGCCGATCAA 61.284 57.895 35.90 7.18 33.26 2.57
1539 1601 2.233605 TACCCACACGGCCGATCAAG 62.234 60.000 35.90 19.34 33.26 3.02
1540 1602 3.499737 CCACACGGCCGATCAAGC 61.500 66.667 35.90 0.00 0.00 4.01
1546 1608 4.802051 GGCCGATCAAGCCCTGCA 62.802 66.667 11.90 0.00 45.16 4.41
1547 1609 2.751436 GCCGATCAAGCCCTGCAA 60.751 61.111 0.00 0.00 0.00 4.08
1548 1610 2.342650 GCCGATCAAGCCCTGCAAA 61.343 57.895 0.00 0.00 0.00 3.68
1549 1611 1.669999 GCCGATCAAGCCCTGCAAAT 61.670 55.000 0.00 0.00 0.00 2.32
1550 1612 0.383231 CCGATCAAGCCCTGCAAATC 59.617 55.000 0.00 0.00 0.00 2.17
1551 1613 0.028505 CGATCAAGCCCTGCAAATCG 59.971 55.000 0.00 0.00 33.22 3.34
1552 1614 0.248784 GATCAAGCCCTGCAAATCGC 60.249 55.000 0.00 0.00 42.89 4.58
1566 1628 2.172483 AATCGCTCAAGACCGTGGCT 62.172 55.000 0.00 0.00 0.00 4.75
1573 1635 2.942796 AAGACCGTGGCTGCGATGA 61.943 57.895 5.37 0.00 0.00 2.92
1666 1728 0.178301 GAAGTCTCGGGGCCTTAAGG 59.822 60.000 17.81 17.81 38.53 2.69
1808 1870 5.077564 GTTTGGTTGGAGGGATAAGAAACT 58.922 41.667 0.00 0.00 0.00 2.66
2000 2062 0.816825 ACGCATCCATCAGGCATGAC 60.817 55.000 1.71 0.00 38.57 3.06
2414 2476 0.179051 AACGAACCAAACGCCACCTA 60.179 50.000 0.00 0.00 0.00 3.08
2415 2477 0.179051 ACGAACCAAACGCCACCTAA 60.179 50.000 0.00 0.00 0.00 2.69
2437 2499 1.895131 GTGCACATGAAAACCCATCCT 59.105 47.619 13.17 0.00 0.00 3.24
2558 2620 3.749981 CAAGAAGGCTTGCACGGT 58.250 55.556 3.46 0.00 44.41 4.83
2559 2621 2.032981 CAAGAAGGCTTGCACGGTT 58.967 52.632 3.46 0.00 44.41 4.44
2560 2622 0.318107 CAAGAAGGCTTGCACGGTTG 60.318 55.000 3.46 0.00 44.41 3.77
2648 2710 1.676678 CGGCGATGGAGAAGGAGGAA 61.677 60.000 0.00 0.00 0.00 3.36
2653 2718 2.100584 CGATGGAGAAGGAGGAAGACAG 59.899 54.545 0.00 0.00 0.00 3.51
2695 2760 3.610677 GGTGTGTTAATGCGGCAATAAAC 59.389 43.478 11.78 13.48 0.00 2.01
2706 2771 3.479006 CGGCAATAAACGTCAGTTTCTG 58.521 45.455 0.00 1.81 46.73 3.02
2719 2784 6.070995 ACGTCAGTTTCTGGTCCTCATATTAA 60.071 38.462 0.00 0.00 31.51 1.40
2726 2791 4.960469 TCTGGTCCTCATATTAAAGTCCGT 59.040 41.667 0.00 0.00 0.00 4.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.757099 CCCTTGCCTCCATGTGCC 60.757 66.667 0.00 0.00 0.00 5.01
1 2 3.455469 GCCCTTGCCTCCATGTGC 61.455 66.667 0.00 0.00 0.00 4.57
2 3 1.186917 TTTGCCCTTGCCTCCATGTG 61.187 55.000 0.00 0.00 36.33 3.21
3 4 0.471591 TTTTGCCCTTGCCTCCATGT 60.472 50.000 0.00 0.00 36.33 3.21
4 5 0.906775 ATTTTGCCCTTGCCTCCATG 59.093 50.000 0.00 0.00 36.33 3.66
5 6 0.906775 CATTTTGCCCTTGCCTCCAT 59.093 50.000 0.00 0.00 36.33 3.41
6 7 0.471591 ACATTTTGCCCTTGCCTCCA 60.472 50.000 0.00 0.00 36.33 3.86
7 8 0.247460 GACATTTTGCCCTTGCCTCC 59.753 55.000 0.00 0.00 36.33 4.30
8 9 0.247460 GGACATTTTGCCCTTGCCTC 59.753 55.000 0.00 0.00 36.33 4.70
9 10 0.471591 TGGACATTTTGCCCTTGCCT 60.472 50.000 0.00 0.00 36.33 4.75
10 11 0.396060 TTGGACATTTTGCCCTTGCC 59.604 50.000 0.00 0.00 36.33 4.52
11 12 1.202627 TGTTGGACATTTTGCCCTTGC 60.203 47.619 0.00 0.00 38.26 4.01
12 13 2.906691 TGTTGGACATTTTGCCCTTG 57.093 45.000 0.00 0.00 0.00 3.61
13 14 3.540617 GTTTGTTGGACATTTTGCCCTT 58.459 40.909 0.00 0.00 0.00 3.95
14 15 2.482839 CGTTTGTTGGACATTTTGCCCT 60.483 45.455 0.00 0.00 0.00 5.19
15 16 1.864082 CGTTTGTTGGACATTTTGCCC 59.136 47.619 0.00 0.00 0.00 5.36
16 17 1.260297 GCGTTTGTTGGACATTTTGCC 59.740 47.619 0.00 0.00 0.00 4.52
17 18 1.260297 GGCGTTTGTTGGACATTTTGC 59.740 47.619 0.00 0.00 0.00 3.68
18 19 1.864082 GGGCGTTTGTTGGACATTTTG 59.136 47.619 0.00 0.00 0.00 2.44
19 20 1.202592 GGGGCGTTTGTTGGACATTTT 60.203 47.619 0.00 0.00 0.00 1.82
20 21 0.391228 GGGGCGTTTGTTGGACATTT 59.609 50.000 0.00 0.00 0.00 2.32
21 22 1.801309 CGGGGCGTTTGTTGGACATT 61.801 55.000 0.00 0.00 0.00 2.71
22 23 2.265182 CGGGGCGTTTGTTGGACAT 61.265 57.895 0.00 0.00 0.00 3.06
23 24 2.321263 TACGGGGCGTTTGTTGGACA 62.321 55.000 0.00 0.00 41.54 4.02
24 25 1.571215 CTACGGGGCGTTTGTTGGAC 61.571 60.000 0.00 0.00 41.54 4.02
25 26 1.301874 CTACGGGGCGTTTGTTGGA 60.302 57.895 0.00 0.00 41.54 3.53
26 27 1.301874 TCTACGGGGCGTTTGTTGG 60.302 57.895 0.00 0.00 41.54 3.77
27 28 1.864176 GTCTACGGGGCGTTTGTTG 59.136 57.895 0.00 0.00 41.54 3.33
28 29 1.665599 CGTCTACGGGGCGTTTGTT 60.666 57.895 0.00 0.00 41.54 2.83
29 30 2.048877 CGTCTACGGGGCGTTTGT 60.049 61.111 0.00 0.00 41.54 2.83
39 40 0.319405 AAGGGGTTTGACCGTCTACG 59.681 55.000 0.00 0.00 39.83 3.51
40 41 2.148768 CAAAGGGGTTTGACCGTCTAC 58.851 52.381 0.00 0.00 39.83 2.59
41 42 2.048601 TCAAAGGGGTTTGACCGTCTA 58.951 47.619 0.00 0.00 39.83 2.59
42 43 0.841289 TCAAAGGGGTTTGACCGTCT 59.159 50.000 0.00 0.00 39.83 4.18
43 44 3.407443 TCAAAGGGGTTTGACCGTC 57.593 52.632 0.00 0.00 39.83 4.79
48 49 0.774908 ATCCGGTCAAAGGGGTTTGA 59.225 50.000 0.00 0.00 38.49 2.69
49 50 0.887933 CATCCGGTCAAAGGGGTTTG 59.112 55.000 0.00 0.00 0.00 2.93
50 51 0.251608 CCATCCGGTCAAAGGGGTTT 60.252 55.000 0.00 0.00 0.00 3.27
51 52 1.137594 TCCATCCGGTCAAAGGGGTT 61.138 55.000 0.00 0.00 0.00 4.11
52 53 1.137594 TTCCATCCGGTCAAAGGGGT 61.138 55.000 0.00 0.00 0.00 4.95
53 54 0.039035 TTTCCATCCGGTCAAAGGGG 59.961 55.000 0.00 0.00 0.00 4.79
54 55 1.173913 GTTTCCATCCGGTCAAAGGG 58.826 55.000 0.00 0.00 0.00 3.95
55 56 0.802494 CGTTTCCATCCGGTCAAAGG 59.198 55.000 0.00 0.00 0.00 3.11
56 57 0.802494 CCGTTTCCATCCGGTCAAAG 59.198 55.000 0.00 0.00 39.38 2.77
57 58 0.397187 TCCGTTTCCATCCGGTCAAA 59.603 50.000 0.00 0.00 44.51 2.69
58 59 0.397187 TTCCGTTTCCATCCGGTCAA 59.603 50.000 0.00 0.00 44.51 3.18
59 60 0.320946 GTTCCGTTTCCATCCGGTCA 60.321 55.000 0.00 0.00 44.51 4.02
60 61 1.356527 CGTTCCGTTTCCATCCGGTC 61.357 60.000 0.00 0.00 44.51 4.79
61 62 1.375013 CGTTCCGTTTCCATCCGGT 60.375 57.895 0.00 0.00 44.51 5.28
62 63 2.104253 CCGTTCCGTTTCCATCCGG 61.104 63.158 0.00 0.00 45.55 5.14
63 64 0.671163 TTCCGTTCCGTTTCCATCCG 60.671 55.000 0.00 0.00 0.00 4.18
64 65 1.084289 CTTCCGTTCCGTTTCCATCC 58.916 55.000 0.00 0.00 0.00 3.51
65 66 1.084289 CCTTCCGTTCCGTTTCCATC 58.916 55.000 0.00 0.00 0.00 3.51
66 67 0.322187 CCCTTCCGTTCCGTTTCCAT 60.322 55.000 0.00 0.00 0.00 3.41
67 68 1.071814 CCCTTCCGTTCCGTTTCCA 59.928 57.895 0.00 0.00 0.00 3.53
68 69 2.330372 GCCCTTCCGTTCCGTTTCC 61.330 63.158 0.00 0.00 0.00 3.13
69 70 0.958876 ATGCCCTTCCGTTCCGTTTC 60.959 55.000 0.00 0.00 0.00 2.78
70 71 0.538746 AATGCCCTTCCGTTCCGTTT 60.539 50.000 0.00 0.00 0.00 3.60
71 72 0.538746 AAATGCCCTTCCGTTCCGTT 60.539 50.000 0.00 0.00 0.00 4.44
72 73 0.958876 GAAATGCCCTTCCGTTCCGT 60.959 55.000 0.00 0.00 0.00 4.69
73 74 0.676782 AGAAATGCCCTTCCGTTCCG 60.677 55.000 0.00 0.00 0.00 4.30
74 75 0.811281 CAGAAATGCCCTTCCGTTCC 59.189 55.000 0.00 0.00 0.00 3.62
75 76 1.534729 ACAGAAATGCCCTTCCGTTC 58.465 50.000 0.00 0.00 0.00 3.95
76 77 2.871096 TACAGAAATGCCCTTCCGTT 57.129 45.000 0.00 0.00 0.00 4.44
77 78 2.618045 CCTTACAGAAATGCCCTTCCGT 60.618 50.000 0.00 0.00 0.00 4.69
78 79 2.017049 CCTTACAGAAATGCCCTTCCG 58.983 52.381 0.00 0.00 0.00 4.30
79 80 2.379005 CCCTTACAGAAATGCCCTTCC 58.621 52.381 0.00 0.00 0.00 3.46
80 81 1.751351 GCCCTTACAGAAATGCCCTTC 59.249 52.381 0.00 0.00 0.00 3.46
81 82 1.077005 TGCCCTTACAGAAATGCCCTT 59.923 47.619 0.00 0.00 0.00 3.95
82 83 0.704076 TGCCCTTACAGAAATGCCCT 59.296 50.000 0.00 0.00 0.00 5.19
83 84 0.817654 GTGCCCTTACAGAAATGCCC 59.182 55.000 0.00 0.00 0.00 5.36
84 85 0.817654 GGTGCCCTTACAGAAATGCC 59.182 55.000 0.00 0.00 0.00 4.40
85 86 1.839424 AGGTGCCCTTACAGAAATGC 58.161 50.000 0.00 0.00 0.00 3.56
86 87 3.374058 CGTTAGGTGCCCTTACAGAAATG 59.626 47.826 9.90 0.00 33.32 2.32
87 88 3.606687 CGTTAGGTGCCCTTACAGAAAT 58.393 45.455 9.90 0.00 33.32 2.17
88 89 2.289819 CCGTTAGGTGCCCTTACAGAAA 60.290 50.000 9.90 0.00 33.32 2.52
89 90 1.276989 CCGTTAGGTGCCCTTACAGAA 59.723 52.381 9.90 0.00 33.32 3.02
90 91 0.899720 CCGTTAGGTGCCCTTACAGA 59.100 55.000 9.90 0.00 33.32 3.41
91 92 0.743345 GCCGTTAGGTGCCCTTACAG 60.743 60.000 9.90 1.77 40.50 2.74
92 93 1.297364 GCCGTTAGGTGCCCTTACA 59.703 57.895 9.90 0.00 40.50 2.41
93 94 1.812507 CGCCGTTAGGTGCCCTTAC 60.813 63.158 0.00 0.31 41.64 2.34
94 95 2.580276 CGCCGTTAGGTGCCCTTA 59.420 61.111 0.00 0.00 41.64 2.69
95 96 4.404098 CCGCCGTTAGGTGCCCTT 62.404 66.667 0.00 0.00 46.42 3.95
97 98 4.832608 CTCCGCCGTTAGGTGCCC 62.833 72.222 0.00 0.00 46.42 5.36
98 99 4.832608 CCTCCGCCGTTAGGTGCC 62.833 72.222 0.00 0.00 46.42 5.01
99 100 4.832608 CCCTCCGCCGTTAGGTGC 62.833 72.222 2.55 0.00 46.42 5.01
101 102 3.073101 GTCCCTCCGCCGTTAGGT 61.073 66.667 2.55 0.00 40.50 3.08
102 103 1.968050 AATGTCCCTCCGCCGTTAGG 61.968 60.000 0.00 0.00 41.62 2.69
103 104 0.107848 AAATGTCCCTCCGCCGTTAG 60.108 55.000 0.00 0.00 0.00 2.34
104 105 0.325602 AAAATGTCCCTCCGCCGTTA 59.674 50.000 0.00 0.00 0.00 3.18
105 106 0.538746 AAAAATGTCCCTCCGCCGTT 60.539 50.000 0.00 0.00 0.00 4.44
106 107 1.074248 AAAAATGTCCCTCCGCCGT 59.926 52.632 0.00 0.00 0.00 5.68
107 108 0.958382 TCAAAAATGTCCCTCCGCCG 60.958 55.000 0.00 0.00 0.00 6.46
108 109 0.811281 CTCAAAAATGTCCCTCCGCC 59.189 55.000 0.00 0.00 0.00 6.13
109 110 0.171231 GCTCAAAAATGTCCCTCCGC 59.829 55.000 0.00 0.00 0.00 5.54
110 111 1.470098 CTGCTCAAAAATGTCCCTCCG 59.530 52.381 0.00 0.00 0.00 4.63
111 112 1.821136 CCTGCTCAAAAATGTCCCTCC 59.179 52.381 0.00 0.00 0.00 4.30
112 113 1.203287 GCCTGCTCAAAAATGTCCCTC 59.797 52.381 0.00 0.00 0.00 4.30
113 114 1.203100 AGCCTGCTCAAAAATGTCCCT 60.203 47.619 0.00 0.00 0.00 4.20
114 115 1.260544 AGCCTGCTCAAAAATGTCCC 58.739 50.000 0.00 0.00 0.00 4.46
115 116 3.391506 AAAGCCTGCTCAAAAATGTCC 57.608 42.857 0.00 0.00 0.00 4.02
116 117 4.370917 TCAAAAGCCTGCTCAAAAATGTC 58.629 39.130 0.00 0.00 0.00 3.06
117 118 4.405116 TCAAAAGCCTGCTCAAAAATGT 57.595 36.364 0.00 0.00 0.00 2.71
118 119 5.934935 ATTCAAAAGCCTGCTCAAAAATG 57.065 34.783 0.00 0.00 0.00 2.32
119 120 6.652062 CCTAATTCAAAAGCCTGCTCAAAAAT 59.348 34.615 0.00 0.00 0.00 1.82
120 121 5.990996 CCTAATTCAAAAGCCTGCTCAAAAA 59.009 36.000 0.00 0.00 0.00 1.94
121 122 5.511202 CCCTAATTCAAAAGCCTGCTCAAAA 60.511 40.000 0.00 0.00 0.00 2.44
122 123 4.021192 CCCTAATTCAAAAGCCTGCTCAAA 60.021 41.667 0.00 0.00 0.00 2.69
123 124 3.511146 CCCTAATTCAAAAGCCTGCTCAA 59.489 43.478 0.00 0.00 0.00 3.02
124 125 3.091545 CCCTAATTCAAAAGCCTGCTCA 58.908 45.455 0.00 0.00 0.00 4.26
125 126 2.428530 CCCCTAATTCAAAAGCCTGCTC 59.571 50.000 0.00 0.00 0.00 4.26
126 127 2.460669 CCCCTAATTCAAAAGCCTGCT 58.539 47.619 0.00 0.00 0.00 4.24
127 128 1.134699 GCCCCTAATTCAAAAGCCTGC 60.135 52.381 0.00 0.00 0.00 4.85
128 129 2.178580 TGCCCCTAATTCAAAAGCCTG 58.821 47.619 0.00 0.00 0.00 4.85
129 130 2.621556 TGCCCCTAATTCAAAAGCCT 57.378 45.000 0.00 0.00 0.00 4.58
130 131 3.694043 TTTGCCCCTAATTCAAAAGCC 57.306 42.857 0.00 0.00 0.00 4.35
131 132 4.392754 CACATTTGCCCCTAATTCAAAAGC 59.607 41.667 0.00 0.00 34.00 3.51
132 133 5.792741 TCACATTTGCCCCTAATTCAAAAG 58.207 37.500 0.00 0.00 34.00 2.27
133 134 5.306678 ACTCACATTTGCCCCTAATTCAAAA 59.693 36.000 0.00 0.00 34.00 2.44
134 135 4.837860 ACTCACATTTGCCCCTAATTCAAA 59.162 37.500 0.00 0.00 34.68 2.69
135 136 4.415596 ACTCACATTTGCCCCTAATTCAA 58.584 39.130 0.00 0.00 0.00 2.69
136 137 4.046286 ACTCACATTTGCCCCTAATTCA 57.954 40.909 0.00 0.00 0.00 2.57
137 138 5.066505 CACTACTCACATTTGCCCCTAATTC 59.933 44.000 0.00 0.00 0.00 2.17
138 139 4.949856 CACTACTCACATTTGCCCCTAATT 59.050 41.667 0.00 0.00 0.00 1.40
139 140 4.526970 CACTACTCACATTTGCCCCTAAT 58.473 43.478 0.00 0.00 0.00 1.73
140 141 3.308117 CCACTACTCACATTTGCCCCTAA 60.308 47.826 0.00 0.00 0.00 2.69
141 142 2.238646 CCACTACTCACATTTGCCCCTA 59.761 50.000 0.00 0.00 0.00 3.53
142 143 1.004745 CCACTACTCACATTTGCCCCT 59.995 52.381 0.00 0.00 0.00 4.79
143 144 1.463674 CCACTACTCACATTTGCCCC 58.536 55.000 0.00 0.00 0.00 5.80
144 145 1.271926 ACCCACTACTCACATTTGCCC 60.272 52.381 0.00 0.00 0.00 5.36
145 146 2.200373 ACCCACTACTCACATTTGCC 57.800 50.000 0.00 0.00 0.00 4.52
146 147 2.159627 CGAACCCACTACTCACATTTGC 59.840 50.000 0.00 0.00 0.00 3.68
147 148 3.659786 TCGAACCCACTACTCACATTTG 58.340 45.455 0.00 0.00 0.00 2.32
148 149 3.323979 ACTCGAACCCACTACTCACATTT 59.676 43.478 0.00 0.00 0.00 2.32
149 150 2.897969 ACTCGAACCCACTACTCACATT 59.102 45.455 0.00 0.00 0.00 2.71
150 151 2.526432 ACTCGAACCCACTACTCACAT 58.474 47.619 0.00 0.00 0.00 3.21
151 152 1.991121 ACTCGAACCCACTACTCACA 58.009 50.000 0.00 0.00 0.00 3.58
152 153 3.119566 CCTAACTCGAACCCACTACTCAC 60.120 52.174 0.00 0.00 0.00 3.51
153 154 3.087031 CCTAACTCGAACCCACTACTCA 58.913 50.000 0.00 0.00 0.00 3.41
154 155 2.426381 CCCTAACTCGAACCCACTACTC 59.574 54.545 0.00 0.00 0.00 2.59
155 156 2.042162 TCCCTAACTCGAACCCACTACT 59.958 50.000 0.00 0.00 0.00 2.57
156 157 2.165234 GTCCCTAACTCGAACCCACTAC 59.835 54.545 0.00 0.00 0.00 2.73
157 158 2.225091 TGTCCCTAACTCGAACCCACTA 60.225 50.000 0.00 0.00 0.00 2.74
158 159 1.264295 GTCCCTAACTCGAACCCACT 58.736 55.000 0.00 0.00 0.00 4.00
159 160 0.971386 TGTCCCTAACTCGAACCCAC 59.029 55.000 0.00 0.00 0.00 4.61
160 161 0.971386 GTGTCCCTAACTCGAACCCA 59.029 55.000 0.00 0.00 0.00 4.51
161 162 0.971386 TGTGTCCCTAACTCGAACCC 59.029 55.000 0.00 0.00 0.00 4.11
162 163 1.672145 GCTGTGTCCCTAACTCGAACC 60.672 57.143 0.00 0.00 0.00 3.62
163 164 1.272769 AGCTGTGTCCCTAACTCGAAC 59.727 52.381 0.00 0.00 0.00 3.95
164 165 1.272490 CAGCTGTGTCCCTAACTCGAA 59.728 52.381 5.25 0.00 0.00 3.71
165 166 0.888619 CAGCTGTGTCCCTAACTCGA 59.111 55.000 5.25 0.00 0.00 4.04
166 167 0.603569 ACAGCTGTGTCCCTAACTCG 59.396 55.000 20.97 0.00 26.76 4.18
167 168 3.955650 TTACAGCTGTGTCCCTAACTC 57.044 47.619 29.57 0.00 38.19 3.01
168 169 4.347000 TCTTTTACAGCTGTGTCCCTAACT 59.653 41.667 29.57 0.00 38.19 2.24
169 170 4.451435 GTCTTTTACAGCTGTGTCCCTAAC 59.549 45.833 29.57 13.89 38.19 2.34
170 171 4.504340 GGTCTTTTACAGCTGTGTCCCTAA 60.504 45.833 29.57 11.55 38.19 2.69
171 172 3.007614 GGTCTTTTACAGCTGTGTCCCTA 59.992 47.826 29.57 4.96 38.19 3.53
172 173 2.224548 GGTCTTTTACAGCTGTGTCCCT 60.225 50.000 29.57 3.26 38.19 4.20
173 174 2.152016 GGTCTTTTACAGCTGTGTCCC 58.848 52.381 29.57 15.29 38.19 4.46
174 175 2.152016 GGGTCTTTTACAGCTGTGTCC 58.848 52.381 29.57 17.88 38.19 4.02
175 176 3.127425 AGGGTCTTTTACAGCTGTGTC 57.873 47.619 29.57 9.89 38.19 3.67
176 177 3.577805 AAGGGTCTTTTACAGCTGTGT 57.422 42.857 29.57 6.74 41.06 3.72
177 178 5.705441 TGAATAAGGGTCTTTTACAGCTGTG 59.295 40.000 29.57 12.63 0.00 3.66
178 179 5.876357 TGAATAAGGGTCTTTTACAGCTGT 58.124 37.500 25.12 25.12 0.00 4.40
179 180 6.817765 TTGAATAAGGGTCTTTTACAGCTG 57.182 37.500 13.48 13.48 0.00 4.24
180 181 7.669722 TCAATTGAATAAGGGTCTTTTACAGCT 59.330 33.333 5.45 0.00 0.00 4.24
181 182 7.826690 TCAATTGAATAAGGGTCTTTTACAGC 58.173 34.615 5.45 0.00 0.00 4.40
182 183 9.231297 TCTCAATTGAATAAGGGTCTTTTACAG 57.769 33.333 9.88 0.00 0.00 2.74
183 184 9.753674 ATCTCAATTGAATAAGGGTCTTTTACA 57.246 29.630 9.88 0.00 0.00 2.41
187 188 9.753674 TGTTATCTCAATTGAATAAGGGTCTTT 57.246 29.630 9.88 0.00 0.00 2.52
188 189 9.401058 CTGTTATCTCAATTGAATAAGGGTCTT 57.599 33.333 9.88 0.00 0.00 3.01
189 190 8.772250 TCTGTTATCTCAATTGAATAAGGGTCT 58.228 33.333 9.88 0.00 0.00 3.85
190 191 8.964476 TCTGTTATCTCAATTGAATAAGGGTC 57.036 34.615 9.88 5.94 0.00 4.46
197 198 8.943085 AGGGAGTATCTGTTATCTCAATTGAAT 58.057 33.333 9.88 8.62 33.73 2.57
198 199 8.324191 AGGGAGTATCTGTTATCTCAATTGAA 57.676 34.615 9.88 1.39 33.73 2.69
199 200 7.015682 GGAGGGAGTATCTGTTATCTCAATTGA 59.984 40.741 8.12 8.12 33.73 2.57
200 201 7.158021 GGAGGGAGTATCTGTTATCTCAATTG 58.842 42.308 0.00 0.00 33.73 2.32
201 202 6.015010 CGGAGGGAGTATCTGTTATCTCAATT 60.015 42.308 0.00 0.00 33.73 2.32
202 203 5.478679 CGGAGGGAGTATCTGTTATCTCAAT 59.521 44.000 0.00 0.00 33.73 2.57
203 204 4.827835 CGGAGGGAGTATCTGTTATCTCAA 59.172 45.833 0.00 0.00 33.73 3.02
204 205 4.141228 ACGGAGGGAGTATCTGTTATCTCA 60.141 45.833 0.00 0.00 32.24 3.27
205 206 4.400120 ACGGAGGGAGTATCTGTTATCTC 58.600 47.826 0.00 0.00 32.24 2.75
206 207 4.456662 ACGGAGGGAGTATCTGTTATCT 57.543 45.455 0.00 0.00 32.24 1.98
207 208 4.022155 GGAACGGAGGGAGTATCTGTTATC 60.022 50.000 0.40 0.00 44.36 1.75
208 209 3.896272 GGAACGGAGGGAGTATCTGTTAT 59.104 47.826 0.40 0.00 44.36 1.89
209 210 3.294214 GGAACGGAGGGAGTATCTGTTA 58.706 50.000 0.40 0.00 44.36 2.41
210 211 2.108970 GGAACGGAGGGAGTATCTGTT 58.891 52.381 0.00 0.00 46.42 3.16
211 212 1.006758 TGGAACGGAGGGAGTATCTGT 59.993 52.381 0.00 0.00 37.90 3.41
212 213 1.776662 TGGAACGGAGGGAGTATCTG 58.223 55.000 0.00 0.00 33.73 2.90
213 214 2.544844 TTGGAACGGAGGGAGTATCT 57.455 50.000 0.00 0.00 33.73 1.98
214 215 3.622166 TTTTGGAACGGAGGGAGTATC 57.378 47.619 0.00 0.00 0.00 2.24
215 216 4.966805 TCTATTTTGGAACGGAGGGAGTAT 59.033 41.667 0.00 0.00 0.00 2.12
216 217 4.161001 GTCTATTTTGGAACGGAGGGAGTA 59.839 45.833 0.00 0.00 0.00 2.59
217 218 3.055312 GTCTATTTTGGAACGGAGGGAGT 60.055 47.826 0.00 0.00 0.00 3.85
218 219 3.532542 GTCTATTTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
219 220 2.093869 CGTCTATTTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
220 221 2.277084 CGTCTATTTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
221 222 2.277084 CCGTCTATTTTGGAACGGAGG 58.723 52.381 6.96 0.00 42.63 4.30
222 223 1.664151 GCCGTCTATTTTGGAACGGAG 59.336 52.381 16.22 0.00 42.63 4.63
223 224 1.276989 AGCCGTCTATTTTGGAACGGA 59.723 47.619 16.22 0.00 42.63 4.69
224 225 1.664151 GAGCCGTCTATTTTGGAACGG 59.336 52.381 8.34 8.34 42.86 4.44
225 226 2.343101 TGAGCCGTCTATTTTGGAACG 58.657 47.619 0.00 0.00 0.00 3.95
226 227 3.751698 AGTTGAGCCGTCTATTTTGGAAC 59.248 43.478 0.00 0.00 0.00 3.62
227 228 4.015872 AGTTGAGCCGTCTATTTTGGAA 57.984 40.909 0.00 0.00 0.00 3.53
228 229 3.695830 AGTTGAGCCGTCTATTTTGGA 57.304 42.857 0.00 0.00 0.00 3.53
229 230 4.766404 AAAGTTGAGCCGTCTATTTTGG 57.234 40.909 0.00 0.00 0.00 3.28
230 231 8.197988 AGTATAAAGTTGAGCCGTCTATTTTG 57.802 34.615 0.00 0.00 0.00 2.44
231 232 9.880157 TTAGTATAAAGTTGAGCCGTCTATTTT 57.120 29.630 0.00 0.00 0.00 1.82
232 233 9.310716 GTTAGTATAAAGTTGAGCCGTCTATTT 57.689 33.333 0.00 0.00 0.00 1.40
233 234 8.472413 TGTTAGTATAAAGTTGAGCCGTCTATT 58.528 33.333 0.00 0.00 0.00 1.73
234 235 8.004087 TGTTAGTATAAAGTTGAGCCGTCTAT 57.996 34.615 0.00 0.00 0.00 1.98
235 236 7.395190 TGTTAGTATAAAGTTGAGCCGTCTA 57.605 36.000 0.00 0.00 0.00 2.59
236 237 6.276832 TGTTAGTATAAAGTTGAGCCGTCT 57.723 37.500 0.00 0.00 0.00 4.18
237 238 6.755141 TGATGTTAGTATAAAGTTGAGCCGTC 59.245 38.462 0.00 0.00 0.00 4.79
238 239 6.636705 TGATGTTAGTATAAAGTTGAGCCGT 58.363 36.000 0.00 0.00 0.00 5.68
239 240 7.715265 ATGATGTTAGTATAAAGTTGAGCCG 57.285 36.000 0.00 0.00 0.00 5.52
240 241 9.765795 ACTATGATGTTAGTATAAAGTTGAGCC 57.234 33.333 0.00 0.00 30.65 4.70
267 268 9.618890 AGTTGCACTATGAAACAATACATAGAT 57.381 29.630 17.24 3.56 44.80 1.98
268 269 9.448438 AAGTTGCACTATGAAACAATACATAGA 57.552 29.630 17.24 0.00 44.80 1.98
269 270 9.708222 GAAGTTGCACTATGAAACAATACATAG 57.292 33.333 0.00 0.00 46.32 2.23
270 271 8.387354 CGAAGTTGCACTATGAAACAATACATA 58.613 33.333 2.59 0.00 0.00 2.29
271 272 7.243487 CGAAGTTGCACTATGAAACAATACAT 58.757 34.615 2.59 0.00 0.00 2.29
272 273 6.348132 CCGAAGTTGCACTATGAAACAATACA 60.348 38.462 2.59 0.00 0.00 2.29
273 274 6.021596 CCGAAGTTGCACTATGAAACAATAC 58.978 40.000 2.59 0.00 0.00 1.89
274 275 5.935206 TCCGAAGTTGCACTATGAAACAATA 59.065 36.000 2.59 0.00 0.00 1.90
275 276 4.759693 TCCGAAGTTGCACTATGAAACAAT 59.240 37.500 2.59 0.00 0.00 2.71
276 277 4.130857 TCCGAAGTTGCACTATGAAACAA 58.869 39.130 2.59 0.00 0.00 2.83
277 278 3.734463 TCCGAAGTTGCACTATGAAACA 58.266 40.909 2.59 0.00 0.00 2.83
278 279 4.631813 AGATCCGAAGTTGCACTATGAAAC 59.368 41.667 0.00 0.00 0.00 2.78
279 280 4.832248 AGATCCGAAGTTGCACTATGAAA 58.168 39.130 0.00 0.00 0.00 2.69
280 281 4.433615 GAGATCCGAAGTTGCACTATGAA 58.566 43.478 0.00 0.00 0.00 2.57
281 282 3.489229 CGAGATCCGAAGTTGCACTATGA 60.489 47.826 0.00 0.00 41.76 2.15
282 283 2.791560 CGAGATCCGAAGTTGCACTATG 59.208 50.000 0.00 0.00 41.76 2.23
283 284 2.688446 TCGAGATCCGAAGTTGCACTAT 59.312 45.455 4.13 0.00 45.43 2.12
284 285 2.089201 TCGAGATCCGAAGTTGCACTA 58.911 47.619 4.13 0.00 45.43 2.74
285 286 0.888619 TCGAGATCCGAAGTTGCACT 59.111 50.000 4.13 0.00 45.43 4.40
286 287 3.418675 TCGAGATCCGAAGTTGCAC 57.581 52.632 4.13 0.00 45.43 4.57
294 295 6.231951 ACTATCTAATCAGTTCGAGATCCGA 58.768 40.000 2.65 2.65 46.94 4.55
295 296 6.489127 ACTATCTAATCAGTTCGAGATCCG 57.511 41.667 0.00 0.00 40.25 4.18
296 297 9.535878 AAAAACTATCTAATCAGTTCGAGATCC 57.464 33.333 0.00 0.00 33.92 3.36
298 299 9.239002 CGAAAAACTATCTAATCAGTTCGAGAT 57.761 33.333 0.00 0.00 33.92 2.75
299 300 8.242053 ACGAAAAACTATCTAATCAGTTCGAGA 58.758 33.333 8.74 0.00 33.92 4.04
300 301 8.314635 CACGAAAAACTATCTAATCAGTTCGAG 58.685 37.037 8.74 0.00 33.92 4.04
301 302 8.024865 TCACGAAAAACTATCTAATCAGTTCGA 58.975 33.333 8.74 0.00 33.92 3.71
302 303 8.102716 GTCACGAAAAACTATCTAATCAGTTCG 58.897 37.037 0.00 0.00 33.92 3.95
303 304 9.141400 AGTCACGAAAAACTATCTAATCAGTTC 57.859 33.333 0.00 0.00 33.92 3.01
305 306 9.790389 CTAGTCACGAAAAACTATCTAATCAGT 57.210 33.333 0.00 0.00 0.00 3.41
316 317 8.485591 CGAAAAACTATCTAGTCACGAAAAACT 58.514 33.333 0.00 0.00 34.99 2.66
317 318 8.271487 ACGAAAAACTATCTAGTCACGAAAAAC 58.729 33.333 0.00 0.00 34.99 2.43
318 319 8.270799 CACGAAAAACTATCTAGTCACGAAAAA 58.729 33.333 0.00 0.00 34.99 1.94
319 320 7.648908 TCACGAAAAACTATCTAGTCACGAAAA 59.351 33.333 0.00 0.00 34.99 2.29
320 321 7.113965 GTCACGAAAAACTATCTAGTCACGAAA 59.886 37.037 0.00 0.00 34.99 3.46
321 322 6.580041 GTCACGAAAAACTATCTAGTCACGAA 59.420 38.462 0.00 0.00 34.99 3.85
322 323 6.072838 AGTCACGAAAAACTATCTAGTCACGA 60.073 38.462 0.00 0.00 34.99 4.35
323 324 6.084925 AGTCACGAAAAACTATCTAGTCACG 58.915 40.000 0.00 0.00 34.99 4.35
324 325 8.961294 TTAGTCACGAAAAACTATCTAGTCAC 57.039 34.615 0.00 0.00 34.99 3.67
325 326 9.006839 TCTTAGTCACGAAAAACTATCTAGTCA 57.993 33.333 0.00 0.00 34.99 3.41
326 327 9.493206 CTCTTAGTCACGAAAAACTATCTAGTC 57.507 37.037 0.00 0.00 34.99 2.59
327 328 9.012161 ACTCTTAGTCACGAAAAACTATCTAGT 57.988 33.333 0.00 0.00 38.39 2.57
328 329 9.279904 CACTCTTAGTCACGAAAAACTATCTAG 57.720 37.037 0.00 0.00 0.00 2.43
329 330 9.006839 TCACTCTTAGTCACGAAAAACTATCTA 57.993 33.333 0.00 0.00 0.00 1.98
330 331 7.883217 TCACTCTTAGTCACGAAAAACTATCT 58.117 34.615 0.00 0.00 0.00 1.98
331 332 8.516811 TTCACTCTTAGTCACGAAAAACTATC 57.483 34.615 0.00 0.00 0.00 2.08
332 333 8.762426 GTTTCACTCTTAGTCACGAAAAACTAT 58.238 33.333 0.00 0.00 0.00 2.12
419 420 5.746245 CCTATGAACTTTTGCTCTAGTCTCG 59.254 44.000 0.00 0.00 0.00 4.04
490 491 4.823989 GTCTCCATACAAAATAGGCATGCT 59.176 41.667 18.92 6.26 0.00 3.79
632 637 3.789274 TCCTCTCTTAGCTTCTAGGAGGT 59.211 47.826 8.07 8.07 39.61 3.85
757 762 6.402334 CCGATAGATCTACCACTAAGTTAGCG 60.402 46.154 9.92 0.08 39.76 4.26
800 806 1.290203 GATGTGACACATGGTAGCGG 58.710 55.000 25.45 0.00 39.27 5.52
876 882 4.202172 GCGAGAGATAGATATAAAGGGGCC 60.202 50.000 0.00 0.00 0.00 5.80
877 883 4.402793 TGCGAGAGATAGATATAAAGGGGC 59.597 45.833 0.00 0.00 0.00 5.80
927 935 2.360585 GGAGCAAGGGAAAGGGGG 59.639 66.667 0.00 0.00 0.00 5.40
947 967 4.086457 GGGAGAGGAAGAGATAGGTGATC 58.914 52.174 0.00 0.00 34.40 2.92
968 988 0.987294 ACAGACTTGGTGAGGGATGG 59.013 55.000 0.00 0.00 0.00 3.51
1034 1054 2.592102 AGGCTGGTCATCAACATGTT 57.408 45.000 4.92 4.92 0.00 2.71
1087 1107 1.964373 CACGGTTAGGGTGGTGTGC 60.964 63.158 0.00 0.00 0.00 4.57
1137 1157 3.007074 CACTAGCCAGCATCATCAGAGAT 59.993 47.826 0.00 0.00 0.00 2.75
1196 1216 0.033504 AGGCAGTGACGGTGTTGTAG 59.966 55.000 0.00 0.00 0.00 2.74
1227 1259 2.401766 CGCTGGAACATCTGCCACC 61.402 63.158 0.00 0.00 38.20 4.61
1273 1317 1.733526 GTGTTTGGCTGGTCGCTTT 59.266 52.632 0.00 0.00 39.13 3.51
1275 1319 2.594592 GGTGTTTGGCTGGTCGCT 60.595 61.111 0.00 0.00 39.13 4.93
1301 1345 1.515521 CCTTGAAGCGACCACAACCC 61.516 60.000 0.00 0.00 0.00 4.11
1353 1397 3.537874 GGCCCGATAGCGACCACT 61.538 66.667 0.00 0.00 40.82 4.00
1356 1400 1.227853 ATTTGGCCCGATAGCGACC 60.228 57.895 0.00 3.37 40.82 4.79
1429 1473 1.303643 GACCAGGGGCTTGTTGAGG 60.304 63.158 0.00 0.00 0.00 3.86
1473 1517 1.279527 TGTTCGTCGTGACAATCGGC 61.280 55.000 0.41 0.00 0.00 5.54
1483 1527 1.263217 GAATGGTGCTTTGTTCGTCGT 59.737 47.619 0.00 0.00 0.00 4.34
1522 1566 2.819595 CTTGATCGGCCGTGTGGG 60.820 66.667 27.15 10.29 39.58 4.61
1535 1597 3.277133 GCGATTTGCAGGGCTTGA 58.723 55.556 0.00 0.00 45.45 3.02
1544 1606 0.179215 CACGGTCTTGAGCGATTTGC 60.179 55.000 25.45 0.00 46.98 3.68
1545 1607 0.443869 CCACGGTCTTGAGCGATTTG 59.556 55.000 25.45 14.56 0.00 2.32
1546 1608 1.298859 GCCACGGTCTTGAGCGATTT 61.299 55.000 25.45 3.88 0.00 2.17
1547 1609 1.741770 GCCACGGTCTTGAGCGATT 60.742 57.895 25.45 4.57 0.00 3.34
1548 1610 2.125512 GCCACGGTCTTGAGCGAT 60.126 61.111 25.45 9.64 0.00 4.58
1549 1611 3.303135 AGCCACGGTCTTGAGCGA 61.303 61.111 25.45 0.00 0.00 4.93
1550 1612 3.114616 CAGCCACGGTCTTGAGCG 61.115 66.667 18.66 18.66 0.00 5.03
1551 1613 3.426568 GCAGCCACGGTCTTGAGC 61.427 66.667 0.00 0.00 0.00 4.26
1552 1614 2.842394 ATCGCAGCCACGGTCTTGAG 62.842 60.000 0.00 0.00 0.00 3.02
1566 1628 1.215382 CTGGTTCTCCGTCATCGCA 59.785 57.895 0.00 0.00 36.30 5.10
1573 1635 2.915659 TGGCGTCTGGTTCTCCGT 60.916 61.111 0.00 0.00 36.30 4.69
1666 1728 0.874175 GCCTTCAAACCAAACGCCAC 60.874 55.000 0.00 0.00 0.00 5.01
1771 1833 1.484653 ACCAAACAAAAAGAGGTGGCC 59.515 47.619 0.00 0.00 0.00 5.36
1808 1870 3.769300 ACTGTAGATGCCTGTGTGTATCA 59.231 43.478 0.00 0.00 0.00 2.15
2000 2062 2.476534 AAAATGAGCAGGCGCGTTGG 62.477 55.000 8.43 0.00 45.49 3.77
2414 2476 3.306919 GGATGGGTTTTCATGTGCACATT 60.307 43.478 29.48 12.05 33.61 2.71
2415 2477 2.234414 GGATGGGTTTTCATGTGCACAT 59.766 45.455 26.61 26.61 36.96 3.21
2437 2499 2.745308 CGGGTGCATCCTCCCATCA 61.745 63.158 15.59 0.00 43.56 3.07
2648 2710 1.599542 GCAAGTTCTTTGTCGCTGTCT 59.400 47.619 0.00 0.00 39.08 3.41
2653 2718 0.028902 AACCGCAAGTTCTTTGTCGC 59.971 50.000 0.00 0.00 39.08 5.19
2695 2760 2.751166 ATGAGGACCAGAAACTGACG 57.249 50.000 0.00 0.00 32.44 4.35
2706 2771 5.163437 ACTGACGGACTTTAATATGAGGACC 60.163 44.000 0.00 0.00 0.00 4.46
2719 2784 3.869065 TCAACTTGAAACTGACGGACTT 58.131 40.909 0.00 0.00 0.00 3.01
2726 2791 4.883585 AGCTGTTCATCAACTTGAAACTGA 59.116 37.500 13.42 4.25 37.36 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.