>input_sequence_69474
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-----------------------------------------------------------ATGGCCGCCAGCGCCAACTGC
ATGTCCACGAACCAACATGTTGATGACCAGCCTTCGCTACCACCAGCGATCTCGCTAGCATCCTCCGCACACCACCCTAA
CCGTGGACTCAGCTCCGAGGAGGAGAACCTCGCCTTATCTCTGATGATGCTGGCTAGTGGCATCCGTGACAAGCATCCTG
CATCCCTCGACCATGCTACAA------CACCGT------CACTGCCTCTGCCACCACAGGTGGCAGATGTTCCAGCGGGT
GTAT------------CCCAGGGTGCGCCGGTGGCCAAAGCGACCAGCCAAACACCCGCTTCGGGGGTTGTGGTCGCTTC
AAGGCAAGGTCCCACACAAGTGCCTTCACTGTCGCCAGTGGTCGCTATCGGGCCAAATCTGGTGCTGGAGCAGGTGGTTC
CACCGAGCCAAGCGACAGACCTGGTGATCGTGCCTCAACAAGCCCCTGGTCTGGCATTGGCATCCACCCAAGTGCGGCCG
ATTGTCACGACGAACAAAGCACCATTCAGCAAGCCCAACAAAGTACCCACACGGC------------------CGATCAA
GCCCTGCAAATCGCTCAAGACCGTGGCTGCGATGACGGAGAACCAGACGCCACAACAGGAGAGCCAACAGCTGTTGCACG
AGTGCCCGTTGTGTCTCAAGAGGTTCAAGAAGTCTCGGGGCCTTAAGGTGGCGTTTGGTTTGAAGGCGGGATTGGCTGGG
GATACCCTTAACCATGTGGTTGGGGATACCCTTGATTCTTGTTTGGTTGTAAGGATTACAGAATGA--------------
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-----------------------------
>chr5B_1_TraesCS5B01G041300
GGCACATGGAGGCAAGGGCAAAATGTCCAACAAACGCCCCGTAGACGGTCAAACCCCTTTGACCGGATGGAAACGGAACG
GAAGGGCATTTCTGTAAGGGCACCTAACGGCGGAGGGACATTTTTGAGCAGGCTTTTGAATTAGGGGCAAATGTGAGTAG
TGGGTTCGAGTTAGGGACACAGCTGTAAAAGACCCTTATTCAATTGAGATAACAGATACTCCCTCCGTTCCAAAATAGAC
GGCTCAACTTTATACTAACATCATAGTATCTATGTATTGTTTCATAGTGCAACTTCGGATCTCGAACTGATTAGATAGTT
TTTCGTGACTAGATAGTTTTTCGTGACTAAGAGTGAAACTAATAAAATGTTGCATTGTATATGCAATGCGAATTAAATAC
ATATTCTACAATAGTGATACGAGACTAGAGCAAAAGTTCATAGGAACTTTTCATAAATTGGAAAAGGAAAAAAATGCTAT
CCAATAATAAAGCATGCCTATTTTGTATGGAGACATCTCGTGAATATTCGGTATCCAAAGCAAAAT-AAGCAAGTAGTCG
CTATA---AAAATAGTATGCATAGTCAAATTTACCGTTCATGCATGAATGGATGGCTTAGATTAAACATTTCTCTTACCT
CCTAGAAGCTAAGAGAGGATAATCTTAAAAGAGCTCATATTGAAAATCTACCATAGTGGTTACTCAACACATGATTTTCT
ACATACATGTGATGGTAGCATGCACCGATGGTAACGTGTGCCGCTAACT-TAGTGGTAGATCTATCGGCAACGTGGCCAT
GCTTACCGCTACCATGTGTCACATCACATAACACGAGCGTTACTAGTTGATAGATGATGACAGCATTGCTTCCCTTTCGG
GGGCCCCTTTATATCTATCTCTCGC--AGGCACAATAGAACACAAGCACACCAGCCCCCTTTCCCTT------------G
CTCCCAGATCACCTATCTCTTCCTCTCCCATCCCTCACCAAGTCTGTGACCAAGATCTCATGGCCGCCAGCGCCAACTGC
ATGTCCACGAACCAACATGTTGATGACCAGCCTTCGCTACCACCAGCGATCTCGCTAGCATCCTCCGCACACCACCCTAA
CCGTGGACTCAGCTCCGAGGAGGAGAACCTCGCCTTATCTCTGATGATGCTGGCTAGTGGCATCCGTGACAAGCATCCTG
CATCCCTCGACCATGCTACAA------CACCGT------CACTGCCTCTGCCACCACAGGTGGCAGATGTTCCAGCGGGT
GTAT------------CCCAGGGTGCGCCGGTGGCCAAAGCGACCAGCCAAACACCCGCTTCGGGGGTTGTGGTCGCTTC
AAGGCAAGGTCCCACACAAGTGCCTTCACTGTCGCCAGTGGTCGCTATCGGGCCAAATCTGGTGCTGGAGCAGGTGGTTC
CACCGAGCCAAGCGACAGACCTGGTGATCGTGCCTCAACAAGCCCCTGGTCTGGCATTGGCATCCACCCAAGTGCGGCCG
ATTGTCACGACGAACAAAGCACCATTCAGCAAGCCCAACAAAGTACCCACACGGC------------------CGATCAA
GCCCTGCAAATCGCTCAAGACCGTGGCTGCGATGACGGAGAACCAGACGCCACAACAGGAGAGCCAACAGCTGTTGCACG
AGTGCCCGTTGTGTCTCAAGAGGTTCAAGAAGTCTCGGGGCCTTAAGGTGGCGTTTGGTTTGAAGGCGGGATTGGCTGGG
GATACCCTTAACCATGTGGTTGGGGATACCCTTGATTCTTGTTTGGTTGTAAGGATTACAGAATGATGGGATGGCCACCT
CTTTTTGTTTGGTTGGAGGGATAAGAAACTGATACACACAGGCATCTACAGTTACGTGTGTAGATCACACTGACATTCCC
TCGGATTCACTTGCATTCCGATGAAGAACACACATCAGAGGGGGACAGCAGCTTGCAGCTCTTGCATAAATAAAAAACAC
GCACGCACGGTTCAACACAAACGTGGATCTACCAGCATATGCACGCATCCATCAGGCATGACCAACGCGCCTGCTCATTT
TCGCTGCTCCGCGTCGCCATAACAAGCCAGCCCCAGGACCTAGAGGCATCCACCGCTGCTCAACTCCGGCCACCACTATC
GCGCTTGATGTGCCGGCGTTGTCGACCTGGGTGGCTGGGTCCAACTGCCATGACGCATGTTCAGGGGATGAGACGAGATG
GAGAAAAGAGAAAAACGAAGAAAACGTTTCACAGCTGAACGAAGCGACGCGCGCGAGGGTGGTTGGCCATATCCGCCAGA
TTTTCGCGGATGAGCTCAACCGCGTTTTGAGGGAATATTCGCAGAATCTTGACTGCCCATGTCCCTGGCCATTCTTAAAC
CAAACATCCGATGGCCATCGAAAAGTTGGCTATCCCTAACCACCCCAAGGATAGCCAACGAACCAAACGCCACCTAATGT
GCACATGAAAACCCATCCTGATGGGAGGATGCACCCGTGTGTGTGGTGCATGAGCACTTTCCCAACCTCCTCCGCGCTTC
GCTCACACGTCAGGCGAAGCAATACCTGCGGCGGAAACAAGCCAAGAAGGCTTGCACGGTTGCACCCGTAGCCGCGGCGG
CGATTGCATGGCACACCATCGACCTGAACATGCCGGAGATTTAATTAGGTCGGCGATGGAGAAGGAGGAA---GACAGCG
ACAAAGAACTTGCGGTTGGTGTGTTAATGCGGCAATAAACGTCAGTTTCTGGTCCTCATATTAAAGTCCGTCAGTTTCAA
GTTGATGAACAGCTGTAGTATTTAATTTT
>chr5D_334
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-------------TAGTTTTTCGTGACTAAGAGTGAAACTAATAAAATGTTGCATCGTATATGCAGTGCAAATTAAATAC
ATATTCTACAATAGTGATATGAGACTAGAGCAAAAGTTCGTAGGAACTTTTCATAAATTGGAAAAGGAAAAAAATGCTAT
CCAATAATAAGGCATGCCTATTTTCTATGGAGACATCTCGTGAATATTCGGCATCCAAAGCAAAA--AAAAAAGTAATTG
CTATAATTAAAATAGTATGCATAGTCAAATTTACCGTTCATGCATGAATGGATGGCTTAGATTAAATATTTCTCTTGCCT
CCTAGAAGGTAAGAGAGGATAATCTTAAAAGAGCCCAAATTGAAAATCTACCATTGTGGTTACTCAACACATGATTTTCT
ACATACATGTGATGGTAGCATGCACCGATGGTAACGTGTGCTGCTAACT-TAGTGGTAGATCTATCGGCAACGTGGCCAT
GCTTATCGCTACCATGTGTCCCATCACATAACACGAGCGTTACTAGTTCATAGATGATGACAACATTGCTTCCCTTTCGG
GACTCCCTTTATATCTATCTCTCGC--AGGCACAATAGAACACAAGCACACCAGTCCCCTTTCT-----CTTGTTCCTTG
CTCCCACATCACCTATCTCTTCCTCTCTCATCCCTCACCAAGTCTGTGACCAAGATCTCATGGCCGCCAACGCCAACTGC
ATGTCCACGAACCGACATGCTGATGACCAGCCTTCGCTACCACCAGCAATCTCGCTAGCATCCTCCACACACCACCCTAA
CCGCGGACTCAGCTCCGAGGAGGAGAACCTCGCCTTCTCTCTGATGATGCTGGCTAGTGGCATCCGTGACGAGCATCCTG
CATCCCTCGACCATGTTACAA------CGCCGT------CATCGCCTCTGCCACCACACGTGACAGATGTTCCAGCGGGT
GTAT------------CCCAGGGTGCACCGGCGACCGAGGCGACCAGCCAAACACCCGCTTCGGTGGTTGTGGTCGCTTC
AAGGCAAGTTCCCACACAAGTGCCTTCACCGTCATCGGCAGTCGCTGTCAGGCCAAATATGGTGCTGGAGCAGGTGGTTC
CACCGAGCCAAGCGACAGGCCTGGTGACCGTGACTCAACCAGCCCCTGGTCTGGCATTGGCATCAACCCAAGTGCATCCG
ATTGTCGCGACGGGCAAAGCACCATTCAGCAAGCCCAACAAAGTATCCACACGGC------------------CGA----
--------------TCAAGACCGTGGCCACGATGGCGGAGAATCAGACACCACAACAGGAGAGCCAACAGCTGTTGCACG
AGTGCCCGTTGTGTCTCAAGAGGTTCAAGAAGTCTCGGGGCCTTAA----------------------------------
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-----------------------------------------------------------------------------TGT
GCACATGAAAACCCATCCAGATGGGAGGATGCACCCGTGTGTGTGGTGCACGAGCACTTTCCCAACCTCCTCCGCGCTTC
GCTCACACGTCAGGCGCAGCAATACCTGCGGTGGAAACAGGCCGAGAAGGCTTGCAC--------CCATAGCCGCGGCGG
CGATCGCATGGCACACCATCGACCTGAACATGCCGGAGATTTGATTAGTTCGGCGATGGAGAAGGAGG---AGGACATCG
ACAAAGAACTTGCGGTTGGTGTGTTAATGCGGCAATAAATGTCAGTTTCTAGTCCTCATATTAGAGTCCGGCAGTTTCCA
GTTGATGAACAGCTGTAGTATTTAATTTT
>chr5A_432
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-------------------------------AAAAGTTCATAGGAACTTTTCA-AAATTGGAAAAGGG-AAAAATGCTAT
CCAATAATAAGGCATGCCTATTTTGTATGGAGACATCTCGTGAATATTCGGTATCCAAAGCAAAACAAAACAAGTAGTCG
CTATAATTAAAATAGTATACATAGTCAAATTTACCGTTCATGCATGAATAGATGGCTTAGATTAAACATTTCTCTTGCCT
CCTAGAAGGTAAGAGGATATAATCTTAAAAGAGCTCATATTGAAAATCTACCATAGTGGTTACTCAACACATGATTTTCT
ACATACATGCGATGGTAGCATGCACCGATGGTAACGTGTGCTGCTAACT-TAGTGGTAGATCTATCGGCAACGTGGCCAT
GCTTATCGCTACCATGTGTCACATCACATAACACGAGCGTTACTAGTTCATAGATGATGACAGCATTGCTTCCCTTTTGG
GACCCCCTTTATATCTATATCTCTCGTAGGCACAATAGAACACAAGCACACCAGTCCCCTTTCCCTTCCCTTGTTCCTTG
CTCCCACATCATCTATCTCTTCCTCTCGCATCCCTCACCAGGTCTGTGACCAAGATCTCATGGCCGCCAGCGCCAACTGC
ATGTCCACGAACCGACATGCTGATGACCAGCCTTCGCTACCACCAGCGATCTCGCTAGCATCCTCCACACACCACCCTAA
CCGCGGACTCAGCTCCGAGGAGGAGAACCTCGCCTTCTCTCTGATGATGCTGGCTAGTGGCATCCGTGACGAGCATCCTG
CATCCCTCGACCATGTTACAA------CGCCGT------CATCGCCTCTGCCACCACACATGGCAGATGTTCCAGCGGGC
GTAT------------CCCAGGGTGCACCGGCGGCCGAGGCGACCGGCCAAACACCCGCTTCGGTGGTTGTGGTCGCTTC
AAGGCAAGTTCCCACACATGTGCCTTCACTGTCGCCGGCAATCGCTGTCAGGCCAAATATGGTGCTGGAGCAGGTGGTTC
CACCGACCCAAGCGCCACACCCGGCGATTGTGACTCAAGCGGCCCCTGCTCTGGCATTGGCATCCACCCAAGCGCGACAA
GTTGTCGCGACGAACAAAGTGCCATTCAACAAGCCCAAGAAAGCGTCCACACAACCAATCAAGCCATGTAAATCGC----
--------------TGAAGACCGTGGCCGCGATGGCGGAGAGCCAGACGCCACAACAGGAGAGCCAACAGCTGTTGCACG
AGTGCCCGTTGTGTCTCAAGAGGTTCAAGAAGTCTCGGGGCCTTAT----------------------------------
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-----------------------------------------------------------------------------TGT
GCACATGAAAACCCATCCAGATGGGAGGATGCACCCGTGTGTGTGGTGCACCAGCACTTTCCCAACCTCCTCCGCGCTTC
GCTCACACGTCAGGCGCAGCAACACCTGCGGTGGAAACAGGCCGAGAAGGCTTGCAC--------CCGTAGCCGCGGCGG
CGATCGCATGGCACACCATCGACCTGAACATGCCGGAGATTTAATTAGCTCCGCGATGGAGAAGGGGG---AGGACATCC
ACAAAGAACTTGCGGTTGGTGTGTTAATGCGGCAATAAATGTCAGTTTCTAGTCCTCATATTAGAGTCCGGCAGTTTCAG
GTTGATGAGCAGCTGTAGTATTTAATTT-
>chr5B_748
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-------------------------------TAATGTGCGCTGCTAACTGTAGTGATAGATCTATTGGCAACATGACCAT
GCTTATCGCTACCATGTGTCACGTCACATACCTCAGGCGTTACTAGTTGATAGATGATGACAACATTGCTCCCCTTTCAG
GACCCCCTTTATATTTATCTCGCGC--AAGCA-----CAACACAAGCACACTAGTCCTCTTTCCCTT-----GTTCTTTG
CTTCGACACCATCTATCTCTTCCGCTCTCGTCCCTCGTAAGGTCTATGACCAAGATCTCCTGGCCGCCAGCGCCAGCCGC
ATGCCCACGAGCCGACCTGCCGATAACCAGCCTTCGCTACCACCGGCAATCTCGCTACCATGCTCCACGCACCACCCTAG
CCGTGGACTCAGCTCCGAGGAGGAGAACCTCGCTTTTTCGCTGATGATGCTGGCCAATGGCATCTGGGGTGAGCATCCTG
CATTCCTTGACCATGATACAA------CGCGACCACCGCCACCGCCTTTGCCACCACACGTGGTAGATATTCCAGTGGGC
GTAGCCCGCGATTTAGCCCAGGGTGCGCCGGCAGCCGAGGTGACCAACCAAACATCGTCTTCAGTGATCGTGGTTGCTCC
AAGGCAAGGTCCCACACAAGCGCCGCCACCATCGTCGGTAGTCGCTGTCGGGCCAAATCTGGTGCTAGAGCGGGTGGTCC
CACTGAGCCAAGCGCCAAACCCGGTGATTGTGACTCAACCAGCCCCTGCTCTGGCATTGTCATCCACCCAAGCACGATAC
GTTGTCGCGACGAACAAAGTGCCATTCAGCAAGCCCAACAAAGCGTCCACACAACCAATCAAGCCCTGCAAATCGC----
--------------TCACGACCATGGCCACGGCAGTGGAGAACCAAGTGTTGCAGCAGGAGAGCCAACAACTGTTACACG
AGTGCCCCCTGTGTCTCAAGAGGTTCAACAAGTCTCGCGGCCTTAA----------------------------------
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-----------------------------------------------------------------------------TGC
GCACATGAAAATCCATCCAGATGGGAGATTGCACCCGTGTGTGTGGTGCATGAGCACTTTCCCCAACTCCTCCGCGCTTC
GCTCACATGTCAGGCGCAGCAACACCTACGGCGGAAACAAGC--------------------------------------
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>chr5D_749
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--------------------------------AACGTGTGATGCTAACTCTAGTGATAGATCTATTGGCAACGTGGTCAT
GCTTATAGCTGCCATGTGTCACGTCTTATAGCTCAGGCGTTACTAGTCGATAGATGATGACAGCATTGCTCCCCTTTCGG
GACCTGCTTTATATCTATCTCACGC--AGGCACAATACAACACAAACACACTAGTCCCCTTTCCCTT-----GTCCCTTG
CTCCCACACCATCTATCTCTTCCGCTCTCGTCCCTCATAAGGTCTGTGACCAAGATCTCATGGCCGCCGGCGCAGGCCGC
ATGCCCACGAACCGACTTGTTGATAATCAGCCTTCGCTACCACCAGCAATCTCAATACCATGCTCCACGCACCACCCTAG
TCGTGGACTCAGCTCCGAGGAGGAGAACCTCGCTTTTTCTCTGATGATGCTGGCCAACGGCATCCGGGATGAGTATCATG
TATTCCTTGACTATGATACAATGCGACCACCGC------CGCTGCCTTTGCCACCACACATGGTAGATATTCCGGTGAGC
GTAGCCCGCGATTTAGCCCAGGGTGTACTGGCGGCCGAGGTGACCAGCCAAACATCGGCTTCGGTGGTCGTGGTTGCTCC
AAGGCAAGGTCCCACACAAGCGCCGCCACCGTTGTCGGTAGTCGTCATCGGGGCAAATCTGGTGCTAGAGCAGGTGGTCC
CGTTGACCCAAGCGCCACACCTGGTGATTGTGACTCAAGCGGCCCCTGCTCTGGCATTGGCATCCACCCAAGCACGACAA
GTTGTCGCGAAGAACAAAGTGCCATTCAACAAGCCCAACAAAGCGTCCACACAACCAATCAAGCCATGCAAATCGC----
--------------TCAAGGCTGTGGTCACGACGGTGGAGAACCAAGTGCTGCAGCAGGGGAGCCAACAACTGTTACACG
AGTGGCCCGTGTGTGTCAAGAGGTTCAACAAGTCTCGGGGCCTTAA----------------------------------
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-----------------------------------------------------------------------------TGT
GCACATGAAAACCCATCCAGATGGGAGATTGCACCCATGTGTGTGGTGCATGAGCACTTTCCCCAACTCCTCTACGCTTC
GCTCACACGTCAGGCGCAACAATACTTGCGGTGGAAACAAGCCAAGAAAGCTTGGGC--------CCGTGGCCGCGGCGG
CGATAGCATGGCACACCATCAACCTGAACATGCCGGAGATTTAATTAGGCCGACGATGGAGAAGGAGGAGGAGGACACCG
ACAAAGAACATGTGGTTGGTGTGTTAATGCGATAGCAGATGTCAGTTTCTAGTCCTCATATCAGAGTCTGGCAGTTTCAA
GTTGGTGAGCAGCTGTAGCTTTTAATTTT
>chr6A_1663
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-------------------------------------------TAAGATGGCGTTTGGTTTGAAGGCGGGATTGGCTGGG
GATACCCTTAACCATGTGGTTGGGGATACCCTTGATTCTTGTTTGGTTGTAAGGATTACAGAGTGATGGGATAGCCACCT
CTTTTTGTTTGGTTGGAGGGATAAGAAACCGATACACACAGGCATCTACAGTTACGTGTGTAGATCACACTGACATTCCC
TCGGATTCACTTGCATTCCGATGAAGAACACACATCAGAGGGGGACAGCAGCTTGCAGCTCTTGCATAAATAAAAAACAC
GCACGCACGGTTCAACACAAACGTGGATCTACCAGCATATGCACGCATCCATCAGGCATGATCAACGCGCCTGCTCATTT
TCGCTGCTCCGCGTCGCCATAACAAGCCAGCCCCAGGACCTAGAGGCATCCACCGCTGCTCAACTCCGGCCACCACTATC
GCGCTTGATGTGCCGGCGTTGTCGACCTGGGTGGCTGGGTCCAACTGCCATGACGCATGTTCAGGGGATGAGACGAGATG
GAGAAAAGAGAAAAACGAAGAAAACGTTTCACAGCTGAACGAAGCGACGCGCGCGAGGGTGGTTGGCCATATCCGCCAGA
TTTTCGCGGATGAGCTCAACCGCGTTTTGAGGGAATATTCGCAGAATCTTGACTGCCCATGTCCCTGGCCATTCTTAAAC
CAAACATCCGATGGCCATCGAAAAGTTGGCTATCCCTAACCACCCCAAGGATAGCCAACGAACCAAACGCCACCT-----
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-----------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS------------------------------------------S---------S---S----------
-------------------S------------------------------------------------------------
----------S------------------------------------------------------S---S----------
----------------------------------------------------------------------------S---
--------S-----------------------------------------------------------------------
-----------------------------------------S--------------------------------------
-----S--------------------------------------------------------------------------
-SS---------------------------------------------------S-------------------------
------S--------------------S----------------------------------------------------
-------------S----------------------------------------------------S-------------
------------------------------------S---------------------------------S---------
---------------S------------------------------------------S---------------------
-------------------------------S----S-S-------------------------S---------------
------------------------------------S--S----------------------------------------
--------------------------------S------S------------------------------------S---
------S--------------------------------------S------------------------------SSSS
SSSSSSSSSSSSSS-------------S------S---------------------------------------------
-----------------------------------------------S--------------------------------
--------------------------------------------------------------S---------S-------
-----------------------------S--------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------S------------------
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---------------------------------------------------------------------------SS---
------------------S-------------------------------------------------------------
----------------S----------------------------------------SSSSSSSS---------------
----S----------------------------------------------------------------S-------S--
---------------------------------------S----------S------------S------S---------
-----------------------------
>forward_73
-----------------------------------------------------CCCCTTTGACCGGATGGAAA-------
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>reverse_1216
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---------------CTACAACACCGTCACTGCCT---------------------------------------------
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-----------------------------
>forward_123
--------------------------------------------------------------------------------
-----------------------CTAACGGCGGAGGGACATTT-------------------------------------
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>reverse_1606
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-----GCAAATCGCTCAAGACCGTG-------------------------------------------------------
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-----------------------------
>forward_1107
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-----------------------------------------------GATCTCGCTAGCATCCTCCG-------------
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>reverse_2718
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-----------------------------------------------------------------------------GCG
ACAAAGAACTTGCGGTT---------------------------------------------------------------
-----------------------------
