Multiple sequence alignment - TraesCS5B01G013400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G013400 chr5B 100.000 2240 0 0 1 2240 13226265 13224026 0.000000e+00 4137.0
1 TraesCS5B01G013400 chr5B 98.148 54 0 1 1732 1784 13224491 13224438 2.370000e-15 93.5
2 TraesCS5B01G013400 chr5B 98.148 54 0 1 1775 1828 13224534 13224482 2.370000e-15 93.5
3 TraesCS5B01G013400 chr5D 86.411 1538 102 50 48 1507 13812719 13811211 0.000000e+00 1583.0
4 TraesCS5B01G013400 chr5D 90.062 1127 54 15 352 1429 13790553 13789436 0.000000e+00 1408.0
5 TraesCS5B01G013400 chr5D 91.150 226 16 2 1894 2118 13789115 13788893 1.010000e-78 303.0
6 TraesCS5B01G013400 chr5D 88.732 71 6 2 2160 2229 13788886 13788817 3.960000e-13 86.1
7 TraesCS5B01G013400 chr5A 91.207 671 33 7 858 1504 10835809 10835141 0.000000e+00 889.0
8 TraesCS5B01G013400 chr5A 84.885 655 56 20 76 691 10836654 10836004 2.440000e-174 621.0
9 TraesCS5B01G013400 chr5A 93.204 206 13 1 1919 2123 10860757 10860552 3.620000e-78 302.0
10 TraesCS5B01G013400 chr5A 89.083 229 24 1 1894 2121 10830827 10830599 1.310000e-72 283.0
11 TraesCS5B01G013400 chr2B 87.600 500 38 14 98 586 483994607 483995093 1.940000e-155 558.0
12 TraesCS5B01G013400 chr2B 90.476 189 14 4 1936 2123 154500279 154500094 1.720000e-61 246.0
13 TraesCS5B01G013400 chr2B 89.175 194 17 4 1932 2123 151107763 151107954 2.870000e-59 239.0
14 TraesCS5B01G013400 chr2B 89.894 188 16 3 1937 2123 154490793 154490608 2.870000e-59 239.0
15 TraesCS5B01G013400 chr2B 87.500 208 19 5 1896 2096 154718375 154718582 1.340000e-57 233.0
16 TraesCS5B01G013400 chr3D 87.278 338 30 8 910 1236 274727681 274728016 7.550000e-100 374.0
17 TraesCS5B01G013400 chr3A 91.667 264 18 2 976 1236 365966207 365966469 1.640000e-96 363.0
18 TraesCS5B01G013400 chr3B 89.591 269 21 3 974 1236 367480263 367480530 3.560000e-88 335.0
19 TraesCS5B01G013400 chr2D 90.674 193 16 2 1932 2123 99658759 99658568 2.850000e-64 255.0
20 TraesCS5B01G013400 chr2A 89.062 192 20 1 1934 2124 98879688 98879497 1.030000e-58 237.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G013400 chr5B 13224026 13226265 2239 True 1441.333333 4137 98.765333 1 2240 3 chr5B.!!$R1 2239
1 TraesCS5B01G013400 chr5D 13811211 13812719 1508 True 1583.000000 1583 86.411000 48 1507 1 chr5D.!!$R1 1459
2 TraesCS5B01G013400 chr5D 13788817 13790553 1736 True 599.033333 1408 89.981333 352 2229 3 chr5D.!!$R2 1877
3 TraesCS5B01G013400 chr5A 10835141 10836654 1513 True 755.000000 889 88.046000 76 1504 2 chr5A.!!$R3 1428

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
656 729 0.035725 CTGCTGAGATCCAAGGCACA 60.036 55.0 0.0 0.0 0.0 4.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1563 1766 0.178068 CCTCCGTCCCACAATACAGG 59.822 60.0 0.0 0.0 0.0 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 4.964241 GGATCGGGGGAGGGGGAG 62.964 77.778 0.00 0.00 0.00 4.30
44 45 4.964241 GATCGGGGGAGGGGGAGG 62.964 77.778 0.00 0.00 0.00 4.30
52 53 0.494095 GGGAGGGGGAGGAGATATGT 59.506 60.000 0.00 0.00 0.00 2.29
57 58 1.694696 GGGGGAGGAGATATGTGACAC 59.305 57.143 0.00 0.00 0.00 3.67
66 67 7.348080 AGGAGATATGTGACACGATTTTAGA 57.652 36.000 0.22 0.00 0.00 2.10
81 87 1.282817 TTAGACGTGTGTGTGTGTGC 58.717 50.000 0.00 0.00 0.00 4.57
117 123 0.752743 TCCTGCTGCTTTGTTGTGCT 60.753 50.000 0.00 0.00 0.00 4.40
124 130 3.302555 CTGCTTTGTTGTGCTACACATG 58.697 45.455 0.57 0.00 44.16 3.21
130 136 2.948315 TGTTGTGCTACACATGCAAGAA 59.052 40.909 0.57 0.00 44.16 2.52
161 167 4.883585 TGCAGATCCTTATAGTTTTGCTGG 59.116 41.667 0.00 0.00 0.00 4.85
201 215 6.656902 TGATTGCTGATTGATAAAGAGAGGT 58.343 36.000 0.00 0.00 0.00 3.85
202 216 6.541278 TGATTGCTGATTGATAAAGAGAGGTG 59.459 38.462 0.00 0.00 0.00 4.00
213 227 2.203788 AGAGGTGACGGCTGGGAA 60.204 61.111 0.00 0.00 0.00 3.97
225 245 2.403561 GGCTGGGAAAGAGATAGAGGT 58.596 52.381 0.00 0.00 0.00 3.85
239 259 0.982704 AGAGGTGCTGATGCTGACTT 59.017 50.000 0.00 0.00 40.48 3.01
276 297 2.163412 TGGATATTGCAACCGCTGTTTC 59.837 45.455 0.00 0.00 39.64 2.78
318 357 6.821388 ACCGACTGCTCATATAAAGAAAGAT 58.179 36.000 0.00 0.00 0.00 2.40
337 400 6.418057 AAGATGAGATTGGGAGAGATGTAC 57.582 41.667 0.00 0.00 0.00 2.90
338 401 5.714863 AGATGAGATTGGGAGAGATGTACT 58.285 41.667 0.00 0.00 0.00 2.73
339 402 6.857848 AGATGAGATTGGGAGAGATGTACTA 58.142 40.000 0.00 0.00 0.00 1.82
342 405 8.821686 ATGAGATTGGGAGAGATGTACTATAG 57.178 38.462 0.00 0.00 0.00 1.31
344 407 8.228206 TGAGATTGGGAGAGATGTACTATAGTT 58.772 37.037 11.40 0.00 0.00 2.24
401 464 4.026062 GCCGTTTTGATTTGTTTGTTCTCC 60.026 41.667 0.00 0.00 0.00 3.71
588 659 5.928264 GTCATGGATCGATGATGTGATTGTA 59.072 40.000 21.37 0.00 34.86 2.41
606 677 8.480853 GTGATTGTAAACTGCGTTATCTATCTC 58.519 37.037 13.75 10.18 0.00 2.75
656 729 0.035725 CTGCTGAGATCCAAGGCACA 60.036 55.000 0.00 0.00 0.00 4.57
740 898 1.039856 TTGCTGGCTTTTGACTTCCC 58.960 50.000 0.00 0.00 0.00 3.97
819 987 4.918583 CCGTCTGTCTTTCTTTCTAGACAC 59.081 45.833 0.00 0.00 44.20 3.67
821 989 5.560375 CGTCTGTCTTTCTTTCTAGACACGA 60.560 44.000 0.00 0.00 44.20 4.35
850 1018 4.082026 TCGATCGCATGTTCATCCATAGAT 60.082 41.667 11.09 0.00 0.00 1.98
853 1021 5.219343 TCGCATGTTCATCCATAGATTCT 57.781 39.130 0.00 0.00 0.00 2.40
854 1022 4.992951 TCGCATGTTCATCCATAGATTCTG 59.007 41.667 0.00 0.00 0.00 3.02
855 1023 4.992951 CGCATGTTCATCCATAGATTCTGA 59.007 41.667 0.00 0.00 0.00 3.27
856 1024 5.467735 CGCATGTTCATCCATAGATTCTGAA 59.532 40.000 0.00 0.00 0.00 3.02
915 1089 2.991250 AGATTCAGGTTGGGTCATTCG 58.009 47.619 0.00 0.00 0.00 3.34
916 1090 2.017049 GATTCAGGTTGGGTCATTCGG 58.983 52.381 0.00 0.00 0.00 4.30
937 1111 5.591067 TCGGAACACTCTTTATGTTTTGGTT 59.409 36.000 0.00 0.00 40.36 3.67
1014 1203 5.841957 AGAACAAGATGGTGATTAATGGC 57.158 39.130 0.00 0.00 0.00 4.40
1017 1206 3.627577 ACAAGATGGTGATTAATGGCGAC 59.372 43.478 0.00 0.00 0.00 5.19
1230 1419 1.270550 CTCCATGTTTTCGGCAAGCTT 59.729 47.619 0.00 0.00 0.00 3.74
1258 1447 0.386838 GGTTCCATATGCAAGCTGCC 59.613 55.000 1.21 0.00 44.23 4.85
1271 1460 1.516110 AGCTGCCCCTATGAACAGAT 58.484 50.000 0.00 0.00 31.67 2.90
1337 1531 7.332926 CGGATCCTGAAGACATTTCCATATTAG 59.667 40.741 10.75 0.00 0.00 1.73
1423 1623 0.312102 GGTGCTTTGGCTTGTCACTC 59.688 55.000 0.00 0.00 39.59 3.51
1469 1672 1.135333 GGGTCCGTGCTTTGTTTCAAA 59.865 47.619 0.00 0.00 0.00 2.69
1470 1673 2.223947 GGGTCCGTGCTTTGTTTCAAAT 60.224 45.455 0.00 0.00 0.00 2.32
1509 1712 4.991687 GCCATTGCTGTAGTATTAGACTCC 59.008 45.833 0.00 0.00 35.45 3.85
1510 1713 5.542779 CCATTGCTGTAGTATTAGACTCCC 58.457 45.833 0.00 0.00 39.81 4.30
1511 1714 5.305644 CCATTGCTGTAGTATTAGACTCCCT 59.694 44.000 0.00 0.00 39.81 4.20
1512 1715 6.451393 CATTGCTGTAGTATTAGACTCCCTC 58.549 44.000 0.00 0.00 39.81 4.30
1513 1716 4.471548 TGCTGTAGTATTAGACTCCCTCC 58.528 47.826 0.00 0.00 39.81 4.30
1514 1717 3.502979 GCTGTAGTATTAGACTCCCTCCG 59.497 52.174 0.00 0.00 39.81 4.63
1515 1718 4.716794 CTGTAGTATTAGACTCCCTCCGT 58.283 47.826 0.00 0.00 39.81 4.69
1516 1719 4.712476 TGTAGTATTAGACTCCCTCCGTC 58.288 47.826 0.00 0.00 39.81 4.79
1517 1720 3.226682 AGTATTAGACTCCCTCCGTCC 57.773 52.381 0.00 0.00 29.95 4.79
1518 1721 1.878734 GTATTAGACTCCCTCCGTCCG 59.121 57.143 0.00 0.00 31.83 4.79
1519 1722 0.549950 ATTAGACTCCCTCCGTCCGA 59.450 55.000 0.00 0.00 31.83 4.55
1520 1723 0.549950 TTAGACTCCCTCCGTCCGAT 59.450 55.000 0.00 0.00 31.83 4.18
1521 1724 1.427809 TAGACTCCCTCCGTCCGATA 58.572 55.000 0.00 0.00 31.83 2.92
1522 1725 0.549950 AGACTCCCTCCGTCCGATAA 59.450 55.000 0.00 0.00 31.83 1.75
1523 1726 0.667453 GACTCCCTCCGTCCGATAAC 59.333 60.000 0.00 0.00 0.00 1.89
1524 1727 0.033796 ACTCCCTCCGTCCGATAACA 60.034 55.000 0.00 0.00 0.00 2.41
1525 1728 1.108776 CTCCCTCCGTCCGATAACAA 58.891 55.000 0.00 0.00 0.00 2.83
1526 1729 1.479323 CTCCCTCCGTCCGATAACAAA 59.521 52.381 0.00 0.00 0.00 2.83
1527 1730 1.901159 TCCCTCCGTCCGATAACAAAA 59.099 47.619 0.00 0.00 0.00 2.44
1528 1731 2.093869 TCCCTCCGTCCGATAACAAAAG 60.094 50.000 0.00 0.00 0.00 2.27
1529 1732 2.093869 CCCTCCGTCCGATAACAAAAGA 60.094 50.000 0.00 0.00 0.00 2.52
1530 1733 2.928116 CCTCCGTCCGATAACAAAAGAC 59.072 50.000 0.00 0.00 0.00 3.01
1532 1735 2.030007 TCCGTCCGATAACAAAAGACGT 60.030 45.455 9.63 0.00 46.62 4.34
1533 1736 2.733026 CCGTCCGATAACAAAAGACGTT 59.267 45.455 9.63 0.00 46.62 3.99
1534 1737 3.184986 CCGTCCGATAACAAAAGACGTTT 59.815 43.478 9.63 0.00 46.62 3.60
1535 1738 4.318974 CCGTCCGATAACAAAAGACGTTTT 60.319 41.667 9.63 0.00 46.62 2.43
1536 1739 5.199726 CGTCCGATAACAAAAGACGTTTTT 58.800 37.500 0.00 0.00 43.89 1.94
1537 1740 5.112937 CGTCCGATAACAAAAGACGTTTTTG 59.887 40.000 22.78 22.78 43.89 2.44
1538 1741 4.971220 TCCGATAACAAAAGACGTTTTTGC 59.029 37.500 23.62 13.45 41.66 3.68
1539 1742 4.735822 CCGATAACAAAAGACGTTTTTGCA 59.264 37.500 23.62 16.85 41.66 4.08
1540 1743 5.230306 CCGATAACAAAAGACGTTTTTGCAA 59.770 36.000 23.62 16.83 41.66 4.08
1541 1744 6.111050 CGATAACAAAAGACGTTTTTGCAAC 58.889 36.000 23.62 15.03 41.66 4.17
1542 1745 6.020995 CGATAACAAAAGACGTTTTTGCAACT 60.021 34.615 23.62 14.39 41.66 3.16
1543 1746 5.915812 AACAAAAGACGTTTTTGCAACTT 57.084 30.435 23.62 14.22 41.66 2.66
1544 1747 8.690680 ATAACAAAAGACGTTTTTGCAACTTA 57.309 26.923 23.62 17.88 41.66 2.24
1545 1748 7.589574 AACAAAAGACGTTTTTGCAACTTAT 57.410 28.000 23.62 9.59 41.66 1.73
1546 1749 6.988329 ACAAAAGACGTTTTTGCAACTTATG 58.012 32.000 23.62 12.22 41.66 1.90
1547 1750 6.588373 ACAAAAGACGTTTTTGCAACTTATGT 59.412 30.769 23.62 12.69 41.66 2.29
1548 1751 7.755822 ACAAAAGACGTTTTTGCAACTTATGTA 59.244 29.630 23.62 0.00 41.66 2.29
1549 1752 7.908193 AAAGACGTTTTTGCAACTTATGTAG 57.092 32.000 2.87 0.00 0.00 2.74
1550 1753 5.449304 AGACGTTTTTGCAACTTATGTAGC 58.551 37.500 0.00 0.00 0.00 3.58
1551 1754 5.238650 AGACGTTTTTGCAACTTATGTAGCT 59.761 36.000 0.00 0.00 0.00 3.32
1552 1755 5.827666 ACGTTTTTGCAACTTATGTAGCTT 58.172 33.333 0.00 0.00 0.00 3.74
1553 1756 5.685511 ACGTTTTTGCAACTTATGTAGCTTG 59.314 36.000 0.00 0.00 0.00 4.01
1554 1757 5.387342 CGTTTTTGCAACTTATGTAGCTTGC 60.387 40.000 0.00 0.00 39.36 4.01
1555 1758 4.844998 TTTGCAACTTATGTAGCTTGCA 57.155 36.364 0.00 1.41 43.07 4.08
1556 1759 5.389859 TTTGCAACTTATGTAGCTTGCAT 57.610 34.783 0.00 7.36 43.61 3.96
1557 1760 6.507958 TTTGCAACTTATGTAGCTTGCATA 57.492 33.333 0.00 6.46 43.61 3.14
1558 1761 6.507958 TTGCAACTTATGTAGCTTGCATAA 57.492 33.333 17.08 17.08 43.61 1.90
1559 1762 6.507958 TGCAACTTATGTAGCTTGCATAAA 57.492 33.333 18.04 6.48 41.54 1.40
1560 1763 6.321717 TGCAACTTATGTAGCTTGCATAAAC 58.678 36.000 18.04 11.61 41.54 2.01
1561 1764 5.452302 GCAACTTATGTAGCTTGCATAAACG 59.548 40.000 18.04 12.68 39.05 3.60
1562 1765 6.542852 CAACTTATGTAGCTTGCATAAACGT 58.457 36.000 18.04 13.11 38.05 3.99
1563 1766 6.345920 ACTTATGTAGCTTGCATAAACGTC 57.654 37.500 18.04 0.00 38.05 4.34
1564 1767 5.293569 ACTTATGTAGCTTGCATAAACGTCC 59.706 40.000 18.04 0.00 38.05 4.79
1565 1768 3.328382 TGTAGCTTGCATAAACGTCCT 57.672 42.857 0.00 0.00 0.00 3.85
1566 1769 3.000041 TGTAGCTTGCATAAACGTCCTG 59.000 45.455 0.00 0.00 0.00 3.86
1567 1770 2.185004 AGCTTGCATAAACGTCCTGT 57.815 45.000 0.00 0.00 0.00 4.00
1568 1771 3.328382 AGCTTGCATAAACGTCCTGTA 57.672 42.857 0.00 0.00 0.00 2.74
1569 1772 3.873910 AGCTTGCATAAACGTCCTGTAT 58.126 40.909 0.00 0.00 0.00 2.29
1570 1773 4.261801 AGCTTGCATAAACGTCCTGTATT 58.738 39.130 0.00 0.00 0.00 1.89
1571 1774 4.094887 AGCTTGCATAAACGTCCTGTATTG 59.905 41.667 0.00 0.00 0.00 1.90
1572 1775 4.142687 GCTTGCATAAACGTCCTGTATTGT 60.143 41.667 0.00 0.00 0.00 2.71
1573 1776 4.937696 TGCATAAACGTCCTGTATTGTG 57.062 40.909 0.00 0.00 0.00 3.33
1574 1777 3.687212 TGCATAAACGTCCTGTATTGTGG 59.313 43.478 0.00 0.00 0.00 4.17
1575 1778 3.064820 GCATAAACGTCCTGTATTGTGGG 59.935 47.826 0.00 0.00 0.00 4.61
1576 1779 4.509616 CATAAACGTCCTGTATTGTGGGA 58.490 43.478 0.00 0.00 0.00 4.37
1577 1780 2.467566 AACGTCCTGTATTGTGGGAC 57.532 50.000 0.00 0.00 44.16 4.46
1579 1782 3.453559 GTCCTGTATTGTGGGACGG 57.546 57.895 0.00 0.00 39.80 4.79
1580 1783 0.899720 GTCCTGTATTGTGGGACGGA 59.100 55.000 0.00 0.00 39.80 4.69
1581 1784 1.134788 GTCCTGTATTGTGGGACGGAG 60.135 57.143 0.00 0.00 39.80 4.63
1582 1785 0.178068 CCTGTATTGTGGGACGGAGG 59.822 60.000 0.00 0.00 0.00 4.30
1583 1786 0.178068 CTGTATTGTGGGACGGAGGG 59.822 60.000 0.00 0.00 0.00 4.30
1584 1787 0.252330 TGTATTGTGGGACGGAGGGA 60.252 55.000 0.00 0.00 0.00 4.20
1585 1788 0.906775 GTATTGTGGGACGGAGGGAA 59.093 55.000 0.00 0.00 0.00 3.97
1586 1789 1.489230 GTATTGTGGGACGGAGGGAAT 59.511 52.381 0.00 0.00 0.00 3.01
1587 1790 1.887797 ATTGTGGGACGGAGGGAATA 58.112 50.000 0.00 0.00 0.00 1.75
1588 1791 1.200519 TTGTGGGACGGAGGGAATAG 58.799 55.000 0.00 0.00 0.00 1.73
1592 1795 2.047061 TGGGACGGAGGGAATAGATTG 58.953 52.381 0.00 0.00 0.00 2.67
1594 1797 2.047830 GGACGGAGGGAATAGATTGGT 58.952 52.381 0.00 0.00 0.00 3.67
1598 1801 2.706190 CGGAGGGAATAGATTGGTTCCT 59.294 50.000 4.36 0.00 42.76 3.36
1602 1805 4.635473 AGGGAATAGATTGGTTCCTGAGA 58.365 43.478 4.36 0.00 42.76 3.27
1604 1807 4.410555 GGGAATAGATTGGTTCCTGAGACT 59.589 45.833 4.36 0.00 42.76 3.24
1609 1812 5.096443 AGATTGGTTCCTGAGACTGAATC 57.904 43.478 0.00 0.00 0.00 2.52
1611 1814 4.705110 TTGGTTCCTGAGACTGAATCAA 57.295 40.909 0.00 0.00 38.81 2.57
1617 1820 6.348868 GGTTCCTGAGACTGAATCAAATGTTC 60.349 42.308 0.00 0.00 0.00 3.18
1618 1821 5.248640 TCCTGAGACTGAATCAAATGTTCC 58.751 41.667 0.00 0.00 0.00 3.62
1621 1851 4.003648 GAGACTGAATCAAATGTTCCGGT 58.996 43.478 0.00 0.00 0.00 5.28
1624 1854 3.888930 ACTGAATCAAATGTTCCGGTTGT 59.111 39.130 0.00 0.00 0.00 3.32
1625 1855 4.229096 CTGAATCAAATGTTCCGGTTGTG 58.771 43.478 0.00 0.00 0.00 3.33
1632 1862 5.805994 TCAAATGTTCCGGTTGTGTAAAAAC 59.194 36.000 0.00 0.00 31.60 2.43
1634 1864 5.585820 ATGTTCCGGTTGTGTAAAAACTT 57.414 34.783 0.00 0.00 33.46 2.66
1635 1865 6.696441 ATGTTCCGGTTGTGTAAAAACTTA 57.304 33.333 0.00 0.00 33.46 2.24
1636 1866 6.696441 TGTTCCGGTTGTGTAAAAACTTAT 57.304 33.333 0.00 0.00 33.46 1.73
1637 1867 6.496571 TGTTCCGGTTGTGTAAAAACTTATG 58.503 36.000 0.00 0.00 33.46 1.90
1638 1868 5.110940 TCCGGTTGTGTAAAAACTTATGC 57.889 39.130 0.00 0.00 33.46 3.14
1640 1870 5.299782 TCCGGTTGTGTAAAAACTTATGCTT 59.700 36.000 0.00 0.00 33.46 3.91
1642 1872 5.401079 CGGTTGTGTAAAAACTTATGCTTGG 59.599 40.000 0.00 0.00 33.46 3.61
1643 1873 5.176774 GGTTGTGTAAAAACTTATGCTTGGC 59.823 40.000 0.00 0.00 33.46 4.52
1655 1885 5.655532 ACTTATGCTTGGCAAATCTCTGAAT 59.344 36.000 0.00 0.00 43.62 2.57
1659 1889 4.171754 GCTTGGCAAATCTCTGAATTGTC 58.828 43.478 0.00 0.00 28.96 3.18
1660 1890 4.409570 CTTGGCAAATCTCTGAATTGTCG 58.590 43.478 0.00 0.00 30.63 4.35
1661 1891 2.162208 TGGCAAATCTCTGAATTGTCGC 59.838 45.455 0.00 0.00 30.63 5.19
1664 1894 4.479619 GCAAATCTCTGAATTGTCGCTTT 58.520 39.130 0.00 0.00 0.00 3.51
1665 1895 4.556523 GCAAATCTCTGAATTGTCGCTTTC 59.443 41.667 0.00 0.00 0.00 2.62
1666 1896 5.618640 GCAAATCTCTGAATTGTCGCTTTCT 60.619 40.000 0.00 0.00 0.00 2.52
1667 1897 5.542616 AATCTCTGAATTGTCGCTTTCTG 57.457 39.130 0.00 0.00 0.00 3.02
1668 1898 4.257267 TCTCTGAATTGTCGCTTTCTGA 57.743 40.909 0.00 0.00 0.00 3.27
1670 1900 5.240891 TCTCTGAATTGTCGCTTTCTGAAT 58.759 37.500 0.00 0.00 31.95 2.57
1673 1903 5.702670 TCTGAATTGTCGCTTTCTGAATTCT 59.297 36.000 7.05 0.00 35.15 2.40
1674 1904 6.205464 TCTGAATTGTCGCTTTCTGAATTCTT 59.795 34.615 7.05 0.00 35.15 2.52
1675 1905 7.387673 TCTGAATTGTCGCTTTCTGAATTCTTA 59.612 33.333 7.05 0.00 35.15 2.10
1676 1906 7.521529 TGAATTGTCGCTTTCTGAATTCTTAG 58.478 34.615 7.05 0.00 35.15 2.18
1677 1907 7.173218 TGAATTGTCGCTTTCTGAATTCTTAGT 59.827 33.333 7.05 0.00 35.15 2.24
1679 1909 5.538118 TGTCGCTTTCTGAATTCTTAGTCA 58.462 37.500 7.05 0.00 0.00 3.41
1680 1910 5.405571 TGTCGCTTTCTGAATTCTTAGTCAC 59.594 40.000 7.05 1.72 0.00 3.67
1681 1911 5.635700 GTCGCTTTCTGAATTCTTAGTCACT 59.364 40.000 7.05 0.00 0.00 3.41
1682 1912 6.807230 GTCGCTTTCTGAATTCTTAGTCACTA 59.193 38.462 7.05 0.00 0.00 2.74
1683 1913 7.489757 GTCGCTTTCTGAATTCTTAGTCACTAT 59.510 37.037 7.05 0.00 0.00 2.12
1684 1914 8.683615 TCGCTTTCTGAATTCTTAGTCACTATA 58.316 33.333 7.05 0.00 0.00 1.31
1685 1915 8.963130 CGCTTTCTGAATTCTTAGTCACTATAG 58.037 37.037 7.05 0.00 0.00 1.31
1728 1984 4.552166 CCAGTTTGTGGTGTCTAACTTG 57.448 45.455 0.00 0.00 42.17 3.16
1729 1985 3.315191 CCAGTTTGTGGTGTCTAACTTGG 59.685 47.826 0.00 0.00 42.17 3.61
1730 1986 3.315191 CAGTTTGTGGTGTCTAACTTGGG 59.685 47.826 0.00 0.00 32.92 4.12
1731 1987 3.201266 AGTTTGTGGTGTCTAACTTGGGA 59.799 43.478 0.00 0.00 31.68 4.37
1732 1988 3.935818 TTGTGGTGTCTAACTTGGGAA 57.064 42.857 0.00 0.00 0.00 3.97
1733 1989 4.447138 TTGTGGTGTCTAACTTGGGAAT 57.553 40.909 0.00 0.00 0.00 3.01
1734 1990 3.750371 TGTGGTGTCTAACTTGGGAATG 58.250 45.455 0.00 0.00 0.00 2.67
1735 1991 3.392947 TGTGGTGTCTAACTTGGGAATGA 59.607 43.478 0.00 0.00 0.00 2.57
1736 1992 4.042809 TGTGGTGTCTAACTTGGGAATGAT 59.957 41.667 0.00 0.00 0.00 2.45
1737 1993 5.010282 GTGGTGTCTAACTTGGGAATGATT 58.990 41.667 0.00 0.00 0.00 2.57
1738 1994 6.177610 GTGGTGTCTAACTTGGGAATGATTA 58.822 40.000 0.00 0.00 0.00 1.75
1739 1995 6.657541 GTGGTGTCTAACTTGGGAATGATTAA 59.342 38.462 0.00 0.00 0.00 1.40
1740 1996 6.657541 TGGTGTCTAACTTGGGAATGATTAAC 59.342 38.462 0.00 0.00 0.00 2.01
1741 1997 6.183360 GGTGTCTAACTTGGGAATGATTAACG 60.183 42.308 0.00 0.00 0.00 3.18
1742 1998 5.878116 TGTCTAACTTGGGAATGATTAACGG 59.122 40.000 0.00 0.00 0.00 4.44
1743 1999 5.878669 GTCTAACTTGGGAATGATTAACGGT 59.121 40.000 0.00 0.00 0.00 4.83
1754 2010 9.292846 GGGAATGATTAACGGTTGTAAATTTAC 57.707 33.333 19.44 19.44 0.00 2.01
1755 2011 9.292846 GGAATGATTAACGGTTGTAAATTTACC 57.707 33.333 22.47 11.46 32.72 2.85
1756 2012 9.843334 GAATGATTAACGGTTGTAAATTTACCA 57.157 29.630 22.47 11.40 32.72 3.25
1757 2013 9.849166 AATGATTAACGGTTGTAAATTTACCAG 57.151 29.630 22.47 12.67 32.72 4.00
1758 2014 8.393671 TGATTAACGGTTGTAAATTTACCAGT 57.606 30.769 22.47 13.21 32.72 4.00
1759 2015 8.505625 TGATTAACGGTTGTAAATTTACCAGTC 58.494 33.333 22.47 11.47 32.72 3.51
1760 2016 4.996062 ACGGTTGTAAATTTACCAGTCG 57.004 40.909 22.47 20.60 32.72 4.18
1761 2017 3.187022 ACGGTTGTAAATTTACCAGTCGC 59.813 43.478 22.47 8.46 32.72 5.19
1762 2018 3.434299 CGGTTGTAAATTTACCAGTCGCT 59.566 43.478 22.47 0.00 32.72 4.93
1765 2021 5.151389 GTTGTAAATTTACCAGTCGCTTGG 58.849 41.667 22.47 3.77 44.09 3.61
1777 2033 6.287107 CCAGTCGCTTGGTATAACTAAATG 57.713 41.667 0.00 0.00 33.38 2.32
1778 2034 6.046593 CCAGTCGCTTGGTATAACTAAATGA 58.953 40.000 0.00 0.00 33.38 2.57
1779 2035 6.706270 CCAGTCGCTTGGTATAACTAAATGAT 59.294 38.462 0.00 0.00 33.38 2.45
1780 2036 7.226720 CCAGTCGCTTGGTATAACTAAATGATT 59.773 37.037 0.00 0.00 33.38 2.57
1781 2037 9.256477 CAGTCGCTTGGTATAACTAAATGATTA 57.744 33.333 0.00 0.00 0.00 1.75
1783 2039 9.859692 GTCGCTTGGTATAACTAAATGATTAAC 57.140 33.333 0.00 0.00 0.00 2.01
1784 2040 8.757789 TCGCTTGGTATAACTAAATGATTAACG 58.242 33.333 0.00 0.00 0.00 3.18
1785 2041 8.007716 CGCTTGGTATAACTAAATGATTAACGG 58.992 37.037 0.00 0.00 0.00 4.44
1789 2045 9.669887 TGGTATAACTAAATGATTAACGGTTGT 57.330 29.630 3.07 0.00 0.00 3.32
1800 2056 9.849166 AATGATTAACGGTTGTAAATTTACCAG 57.151 29.630 22.47 12.67 32.72 4.00
1801 2057 8.393671 TGATTAACGGTTGTAAATTTACCAGT 57.606 30.769 22.47 13.21 32.72 4.00
1802 2058 8.505625 TGATTAACGGTTGTAAATTTACCAGTC 58.494 33.333 22.47 11.47 32.72 3.51
1803 2059 4.996062 ACGGTTGTAAATTTACCAGTCG 57.004 40.909 22.47 20.60 32.72 4.18
1804 2060 3.187022 ACGGTTGTAAATTTACCAGTCGC 59.813 43.478 22.47 8.46 32.72 5.19
1805 2061 3.434299 CGGTTGTAAATTTACCAGTCGCT 59.566 43.478 22.47 0.00 32.72 4.93
1806 2062 4.083696 CGGTTGTAAATTTACCAGTCGCTT 60.084 41.667 22.47 0.00 32.72 4.68
1807 2063 5.151389 GGTTGTAAATTTACCAGTCGCTTG 58.849 41.667 22.47 0.00 32.72 4.01
1808 2064 5.151389 GTTGTAAATTTACCAGTCGCTTGG 58.849 41.667 22.47 3.77 44.09 3.61
1820 2076 6.287107 CCAGTCGCTTGGTATAACTAAATG 57.713 41.667 0.00 0.00 33.38 2.32
1821 2077 6.046593 CCAGTCGCTTGGTATAACTAAATGA 58.953 40.000 0.00 0.00 33.38 2.57
1822 2078 6.706270 CCAGTCGCTTGGTATAACTAAATGAT 59.294 38.462 0.00 0.00 33.38 2.45
1823 2079 7.226720 CCAGTCGCTTGGTATAACTAAATGATT 59.773 37.037 0.00 0.00 33.38 2.57
1824 2080 8.612619 CAGTCGCTTGGTATAACTAAATGATTT 58.387 33.333 0.00 0.00 0.00 2.17
1825 2081 9.826574 AGTCGCTTGGTATAACTAAATGATTTA 57.173 29.630 0.00 0.00 0.00 1.40
1850 2106 7.603963 ACTTGGTATTTTGTTTTTGTTCCAC 57.396 32.000 0.00 0.00 0.00 4.02
1851 2107 7.162082 ACTTGGTATTTTGTTTTTGTTCCACA 58.838 30.769 0.00 0.00 0.00 4.17
1852 2108 7.826744 ACTTGGTATTTTGTTTTTGTTCCACAT 59.173 29.630 0.00 0.00 0.00 3.21
1853 2109 8.567285 TTGGTATTTTGTTTTTGTTCCACATT 57.433 26.923 0.00 0.00 0.00 2.71
1854 2110 8.567285 TGGTATTTTGTTTTTGTTCCACATTT 57.433 26.923 0.00 0.00 0.00 2.32
1855 2111 8.669243 TGGTATTTTGTTTTTGTTCCACATTTC 58.331 29.630 0.00 0.00 0.00 2.17
1856 2112 8.669243 GGTATTTTGTTTTTGTTCCACATTTCA 58.331 29.630 0.00 0.00 0.00 2.69
1859 2115 9.623350 ATTTTGTTTTTGTTCCACATTTCAAAG 57.377 25.926 0.00 0.00 32.67 2.77
1860 2116 7.969536 TTGTTTTTGTTCCACATTTCAAAGA 57.030 28.000 0.00 0.00 32.67 2.52
1861 2117 8.558973 TTGTTTTTGTTCCACATTTCAAAGAT 57.441 26.923 0.00 0.00 32.67 2.40
1862 2118 7.972527 TGTTTTTGTTCCACATTTCAAAGATG 58.027 30.769 0.00 0.00 32.67 2.90
1863 2119 7.065563 TGTTTTTGTTCCACATTTCAAAGATGG 59.934 33.333 0.00 0.00 32.67 3.51
1864 2120 6.477053 TTTGTTCCACATTTCAAAGATGGA 57.523 33.333 1.65 1.65 37.68 3.41
1865 2121 6.669125 TTGTTCCACATTTCAAAGATGGAT 57.331 33.333 6.07 0.00 39.18 3.41
1866 2122 7.773489 TTGTTCCACATTTCAAAGATGGATA 57.227 32.000 6.07 0.00 39.18 2.59
1867 2123 7.959658 TGTTCCACATTTCAAAGATGGATAT 57.040 32.000 6.07 0.00 39.18 1.63
1868 2124 7.999679 TGTTCCACATTTCAAAGATGGATATC 58.000 34.615 6.07 0.00 39.18 1.63
1869 2125 7.614974 TGTTCCACATTTCAAAGATGGATATCA 59.385 33.333 4.83 4.56 39.18 2.15
1870 2126 8.469200 GTTCCACATTTCAAAGATGGATATCAA 58.531 33.333 4.83 0.00 39.18 2.57
1871 2127 8.771521 TCCACATTTCAAAGATGGATATCAAT 57.228 30.769 4.83 0.00 34.50 2.57
1872 2128 9.204337 TCCACATTTCAAAGATGGATATCAATT 57.796 29.630 4.83 0.00 34.50 2.32
1873 2129 9.256477 CCACATTTCAAAGATGGATATCAATTG 57.744 33.333 4.83 0.00 35.70 2.32
1874 2130 8.761497 CACATTTCAAAGATGGATATCAATTGC 58.239 33.333 4.83 0.00 34.77 3.56
1875 2131 8.701895 ACATTTCAAAGATGGATATCAATTGCT 58.298 29.630 4.83 0.00 34.77 3.91
1876 2132 9.542462 CATTTCAAAGATGGATATCAATTGCTT 57.458 29.630 4.83 0.00 34.77 3.91
1880 2136 8.301720 TCAAAGATGGATATCAATTGCTTATGC 58.698 33.333 4.83 6.67 34.77 3.14
1881 2137 8.304596 CAAAGATGGATATCAATTGCTTATGCT 58.695 33.333 4.83 6.45 36.58 3.79
1882 2138 8.418597 AAGATGGATATCAATTGCTTATGCTT 57.581 30.769 4.83 11.53 36.58 3.91
1883 2139 7.827701 AGATGGATATCAATTGCTTATGCTTG 58.172 34.615 4.83 0.00 36.58 4.01
1884 2140 6.964807 TGGATATCAATTGCTTATGCTTGT 57.035 33.333 4.83 0.00 40.48 3.16
1885 2141 8.640063 ATGGATATCAATTGCTTATGCTTGTA 57.360 30.769 4.83 2.73 40.48 2.41
1886 2142 8.462589 TGGATATCAATTGCTTATGCTTGTAA 57.537 30.769 4.83 0.00 40.48 2.41
1887 2143 8.911965 TGGATATCAATTGCTTATGCTTGTAAA 58.088 29.630 4.83 0.00 40.48 2.01
1888 2144 9.185192 GGATATCAATTGCTTATGCTTGTAAAC 57.815 33.333 4.83 0.00 40.48 2.01
1889 2145 9.734620 GATATCAATTGCTTATGCTTGTAAACA 57.265 29.630 0.00 0.00 40.48 2.83
1892 2148 8.830201 TCAATTGCTTATGCTTGTAAACAATT 57.170 26.923 0.00 10.13 39.26 2.32
1900 2156 9.630098 CTTATGCTTGTAAACAATTCAATCACT 57.370 29.630 0.00 0.00 35.02 3.41
1904 2160 9.462174 TGCTTGTAAACAATTCAATCACTTTAG 57.538 29.630 0.00 0.00 35.02 1.85
1917 2173 6.945435 TCAATCACTTTAGCAACCATTTAGGA 59.055 34.615 0.00 0.00 41.22 2.94
1927 2183 7.008021 AGCAACCATTTAGGAATTTTGTCAT 57.992 32.000 0.00 0.00 41.22 3.06
1930 2186 8.655970 GCAACCATTTAGGAATTTTGTCATAAC 58.344 33.333 0.00 0.00 41.22 1.89
1935 2191 9.139174 CATTTAGGAATTTTGTCATAACACCAC 57.861 33.333 0.00 0.00 34.35 4.16
1936 2192 7.825331 TTAGGAATTTTGTCATAACACCACA 57.175 32.000 0.00 0.00 34.35 4.17
1977 2233 1.065410 TTGGGGCCTTCTCACAAGGA 61.065 55.000 0.84 0.00 39.81 3.36
1978 2234 1.301293 GGGGCCTTCTCACAAGGAG 59.699 63.158 0.84 0.00 45.49 3.69
2060 2316 9.756461 CTTTAGTAAAAGGCGAAAGAATAGTTC 57.244 33.333 0.00 0.00 38.77 3.01
2096 2353 2.980233 AGCTGCGTGCCTTTCACC 60.980 61.111 0.00 0.00 42.69 4.02
2118 2375 1.837439 TCTGCACCCCACGATCTTATT 59.163 47.619 0.00 0.00 0.00 1.40
2120 2377 3.452990 TCTGCACCCCACGATCTTATTTA 59.547 43.478 0.00 0.00 0.00 1.40
2121 2378 3.804036 TGCACCCCACGATCTTATTTAG 58.196 45.455 0.00 0.00 0.00 1.85
2123 2380 3.744530 GCACCCCACGATCTTATTTAGCT 60.745 47.826 0.00 0.00 0.00 3.32
2124 2381 4.451900 CACCCCACGATCTTATTTAGCTT 58.548 43.478 0.00 0.00 0.00 3.74
2125 2382 4.881850 CACCCCACGATCTTATTTAGCTTT 59.118 41.667 0.00 0.00 0.00 3.51
2126 2383 5.357032 CACCCCACGATCTTATTTAGCTTTT 59.643 40.000 0.00 0.00 0.00 2.27
2127 2384 5.949952 ACCCCACGATCTTATTTAGCTTTTT 59.050 36.000 0.00 0.00 0.00 1.94
2157 2414 6.920569 TTGAGGGAAACGATCTTATTTAGC 57.079 37.500 0.00 0.00 0.00 3.09
2158 2415 6.235231 TGAGGGAAACGATCTTATTTAGCT 57.765 37.500 0.00 0.00 0.00 3.32
2165 2422 4.877282 ACGATCTTATTTAGCTGAGCTCC 58.123 43.478 11.68 0.00 40.44 4.70
2178 2435 3.160748 GCTCCCTGCTCTCTCCCC 61.161 72.222 0.00 0.00 38.95 4.81
2206 2463 0.175073 GCGAGGTGGGACTAAACGAT 59.825 55.000 0.00 0.00 0.00 3.73
2207 2464 1.405121 GCGAGGTGGGACTAAACGATT 60.405 52.381 0.00 0.00 0.00 3.34
2213 2470 1.092348 GGGACTAAACGATTGGCACC 58.908 55.000 0.00 0.00 0.00 5.01
2215 2472 2.433436 GGACTAAACGATTGGCACCTT 58.567 47.619 0.00 0.00 0.00 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.964241 CTCCCCCTCCCCCGATCC 62.964 77.778 0.00 0.00 0.00 3.36
27 28 4.964241 CCTCCCCCTCCCCCGATC 62.964 77.778 0.00 0.00 0.00 3.69
31 32 1.465189 ATATCTCCTCCCCCTCCCCC 61.465 65.000 0.00 0.00 0.00 5.40
32 33 0.252927 CATATCTCCTCCCCCTCCCC 60.253 65.000 0.00 0.00 0.00 4.81
33 34 0.494095 ACATATCTCCTCCCCCTCCC 59.506 60.000 0.00 0.00 0.00 4.30
34 35 1.150135 TCACATATCTCCTCCCCCTCC 59.850 57.143 0.00 0.00 0.00 4.30
35 36 2.252714 GTCACATATCTCCTCCCCCTC 58.747 57.143 0.00 0.00 0.00 4.30
36 37 1.580658 TGTCACATATCTCCTCCCCCT 59.419 52.381 0.00 0.00 0.00 4.79
37 38 1.694696 GTGTCACATATCTCCTCCCCC 59.305 57.143 0.00 0.00 0.00 5.40
38 39 1.341531 CGTGTCACATATCTCCTCCCC 59.658 57.143 3.42 0.00 0.00 4.81
39 40 2.307768 TCGTGTCACATATCTCCTCCC 58.692 52.381 3.42 0.00 0.00 4.30
40 41 4.592485 AATCGTGTCACATATCTCCTCC 57.408 45.455 3.42 0.00 0.00 4.30
41 42 7.380065 GTCTAAAATCGTGTCACATATCTCCTC 59.620 40.741 3.42 0.00 0.00 3.71
42 43 7.203910 GTCTAAAATCGTGTCACATATCTCCT 58.796 38.462 3.42 0.00 0.00 3.69
43 44 6.142480 CGTCTAAAATCGTGTCACATATCTCC 59.858 42.308 3.42 0.00 0.00 3.71
44 45 6.691818 ACGTCTAAAATCGTGTCACATATCTC 59.308 38.462 3.42 0.00 38.85 2.75
45 46 6.561614 ACGTCTAAAATCGTGTCACATATCT 58.438 36.000 3.42 0.00 38.85 1.98
46 47 6.807708 ACGTCTAAAATCGTGTCACATATC 57.192 37.500 3.42 0.00 38.85 1.63
57 58 3.244345 ACACACACACACGTCTAAAATCG 59.756 43.478 0.00 0.00 0.00 3.34
66 67 3.860125 GCGCACACACACACACGT 61.860 61.111 0.30 0.00 0.00 4.49
145 151 6.757897 TTCACATCCAGCAAAACTATAAGG 57.242 37.500 0.00 0.00 0.00 2.69
153 159 6.258287 CAGAACAAAATTCACATCCAGCAAAA 59.742 34.615 0.00 0.00 0.00 2.44
161 167 6.864685 TCAGCAATCAGAACAAAATTCACATC 59.135 34.615 0.00 0.00 0.00 3.06
201 215 1.757118 CTATCTCTTTCCCAGCCGTCA 59.243 52.381 0.00 0.00 0.00 4.35
202 216 2.032620 TCTATCTCTTTCCCAGCCGTC 58.967 52.381 0.00 0.00 0.00 4.79
213 227 3.069872 CAGCATCAGCACCTCTATCTCTT 59.930 47.826 0.00 0.00 45.49 2.85
225 245 0.035739 TGCAGAAGTCAGCATCAGCA 59.964 50.000 0.00 0.00 45.49 4.41
239 259 6.039047 GCAATATCCAGAGAAGAAAATGCAGA 59.961 38.462 0.00 0.00 0.00 4.26
244 264 6.183360 CGGTTGCAATATCCAGAGAAGAAAAT 60.183 38.462 0.59 0.00 0.00 1.82
295 328 6.925718 TCATCTTTCTTTATATGAGCAGTCGG 59.074 38.462 0.00 0.00 0.00 4.79
296 329 7.864882 TCTCATCTTTCTTTATATGAGCAGTCG 59.135 37.037 0.00 0.00 43.21 4.18
318 357 7.760607 ACTATAGTACATCTCTCCCAATCTCA 58.239 38.462 2.75 0.00 0.00 3.27
342 405 8.718102 TCTCACAGCTATAAACCAATAGAAAC 57.282 34.615 0.00 0.00 32.13 2.78
344 407 9.905713 AAATCTCACAGCTATAAACCAATAGAA 57.094 29.630 0.00 0.00 32.13 2.10
356 419 4.380233 GCACAAGCAAAATCTCACAGCTAT 60.380 41.667 0.00 0.00 41.58 2.97
401 464 2.892374 TGTAACATCACGGATGCTCTG 58.108 47.619 12.16 0.00 43.15 3.35
606 677 7.010183 TGTTTTCTTCAGTACTTGAGAAGTTCG 59.990 37.037 16.73 0.00 42.81 3.95
656 729 9.642343 AATAAGGAAAGGTTAAGAACTTCAAGT 57.358 29.630 0.00 0.00 0.00 3.16
702 818 6.975772 CCAGCAAAGTATACTACTCAGAGAAC 59.024 42.308 5.65 0.00 38.26 3.01
821 989 2.892374 TGAACATGCGATCGAACATCT 58.108 42.857 21.57 3.11 0.00 2.90
835 1003 8.857098 CCAAATTCAGAATCTATGGATGAACAT 58.143 33.333 13.68 0.00 34.90 2.71
915 1089 9.758651 AAATAACCAAAACATAAAGAGTGTTCC 57.241 29.630 0.00 0.00 38.76 3.62
968 1157 9.093458 TCTTATCTATCTGCATGGAAGTATGAA 57.907 33.333 0.00 0.00 0.00 2.57
1014 1203 3.114616 CCTCTTGCAGGTGCGTCG 61.115 66.667 0.00 0.00 45.83 5.12
1017 1206 2.435586 CTCCCTCTTGCAGGTGCG 60.436 66.667 0.00 0.00 45.83 5.34
1230 1419 4.757019 TGCATATGGAACCTAACGGTAA 57.243 40.909 4.56 0.00 44.73 2.85
1258 1447 3.931907 TGGGTTCATCTGTTCATAGGG 57.068 47.619 0.00 0.00 0.00 3.53
1271 1460 7.398829 TGCAGTTATTTAAGTCTATGGGTTCA 58.601 34.615 0.00 0.00 0.00 3.18
1469 1672 6.392354 GCAATGGCTTGTATGCAACATATAT 58.608 36.000 0.00 0.00 38.10 0.86
1470 1673 5.771469 GCAATGGCTTGTATGCAACATATA 58.229 37.500 0.00 0.00 38.10 0.86
1504 1707 0.667453 GTTATCGGACGGAGGGAGTC 59.333 60.000 0.00 0.00 37.86 3.36
1507 1710 1.559368 TTTGTTATCGGACGGAGGGA 58.441 50.000 0.00 0.00 0.00 4.20
1508 1711 2.093869 TCTTTTGTTATCGGACGGAGGG 60.094 50.000 0.00 0.00 0.00 4.30
1509 1712 2.928116 GTCTTTTGTTATCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
1510 1713 2.597305 CGTCTTTTGTTATCGGACGGAG 59.403 50.000 0.00 0.00 43.69 4.63
1511 1714 2.598589 CGTCTTTTGTTATCGGACGGA 58.401 47.619 0.00 0.00 43.69 4.69
1514 1717 5.108518 GCAAAAACGTCTTTTGTTATCGGAC 60.109 40.000 23.92 10.84 40.47 4.79
1515 1718 4.971220 GCAAAAACGTCTTTTGTTATCGGA 59.029 37.500 23.92 0.00 40.47 4.55
1516 1719 4.735822 TGCAAAAACGTCTTTTGTTATCGG 59.264 37.500 23.92 8.83 40.47 4.18
1517 1720 5.858159 TGCAAAAACGTCTTTTGTTATCG 57.142 34.783 23.92 9.28 40.47 2.92
1518 1721 7.216920 AGTTGCAAAAACGTCTTTTGTTATC 57.783 32.000 23.92 16.69 40.47 1.75
1519 1722 7.589574 AAGTTGCAAAAACGTCTTTTGTTAT 57.410 28.000 23.92 13.16 40.47 1.89
1520 1723 8.587950 CATAAGTTGCAAAAACGTCTTTTGTTA 58.412 29.630 23.92 18.14 40.47 2.41
1521 1724 5.915812 AAGTTGCAAAAACGTCTTTTGTT 57.084 30.435 23.92 14.59 40.47 2.83
1522 1725 6.588373 ACATAAGTTGCAAAAACGTCTTTTGT 59.412 30.769 23.92 7.97 40.47 2.83
1523 1726 6.988329 ACATAAGTTGCAAAAACGTCTTTTG 58.012 32.000 21.37 21.37 41.09 2.44
1524 1727 7.043656 GCTACATAAGTTGCAAAAACGTCTTTT 60.044 33.333 0.00 0.00 44.32 2.27
1525 1728 6.416750 GCTACATAAGTTGCAAAAACGTCTTT 59.583 34.615 0.00 0.00 44.32 2.52
1526 1729 5.912955 GCTACATAAGTTGCAAAAACGTCTT 59.087 36.000 0.00 1.48 44.32 3.01
1527 1730 5.238650 AGCTACATAAGTTGCAAAAACGTCT 59.761 36.000 0.00 0.00 46.76 4.18
1528 1731 5.449304 AGCTACATAAGTTGCAAAAACGTC 58.551 37.500 0.00 0.00 46.76 4.34
1529 1732 5.432885 AGCTACATAAGTTGCAAAAACGT 57.567 34.783 0.00 0.00 46.76 3.99
1530 1733 5.387342 GCAAGCTACATAAGTTGCAAAAACG 60.387 40.000 0.00 0.00 46.76 3.60
1531 1734 5.461737 TGCAAGCTACATAAGTTGCAAAAAC 59.538 36.000 0.00 0.00 46.76 2.43
1532 1735 5.595885 TGCAAGCTACATAAGTTGCAAAAA 58.404 33.333 0.00 0.00 46.76 1.94
1533 1736 5.193663 TGCAAGCTACATAAGTTGCAAAA 57.806 34.783 0.00 0.00 46.76 2.44
1534 1737 4.844998 TGCAAGCTACATAAGTTGCAAA 57.155 36.364 0.00 0.00 46.76 3.68
1535 1738 6.507958 TTATGCAAGCTACATAAGTTGCAA 57.492 33.333 14.87 0.00 46.03 4.08
1536 1739 6.321717 GTTTATGCAAGCTACATAAGTTGCA 58.678 36.000 17.04 13.18 46.76 4.08
1537 1740 5.452302 CGTTTATGCAAGCTACATAAGTTGC 59.548 40.000 17.04 8.54 45.09 4.17
1538 1741 6.542852 ACGTTTATGCAAGCTACATAAGTTG 58.457 36.000 17.04 14.09 40.18 3.16
1539 1742 6.183360 GGACGTTTATGCAAGCTACATAAGTT 60.183 38.462 17.04 9.25 40.18 2.66
1540 1743 5.293569 GGACGTTTATGCAAGCTACATAAGT 59.706 40.000 17.04 14.00 40.18 2.24
1541 1744 5.523916 AGGACGTTTATGCAAGCTACATAAG 59.476 40.000 17.04 11.80 40.18 1.73
1542 1745 5.293324 CAGGACGTTTATGCAAGCTACATAA 59.707 40.000 14.87 14.87 38.02 1.90
1543 1746 4.808895 CAGGACGTTTATGCAAGCTACATA 59.191 41.667 5.48 5.48 0.00 2.29
1544 1747 3.623060 CAGGACGTTTATGCAAGCTACAT 59.377 43.478 7.28 7.28 0.00 2.29
1545 1748 3.000041 CAGGACGTTTATGCAAGCTACA 59.000 45.455 0.00 0.00 0.00 2.74
1546 1749 3.000727 ACAGGACGTTTATGCAAGCTAC 58.999 45.455 0.00 0.00 0.00 3.58
1547 1750 3.328382 ACAGGACGTTTATGCAAGCTA 57.672 42.857 0.00 0.00 0.00 3.32
1548 1751 2.185004 ACAGGACGTTTATGCAAGCT 57.815 45.000 0.00 0.00 0.00 3.74
1549 1752 4.142687 ACAATACAGGACGTTTATGCAAGC 60.143 41.667 0.00 0.00 0.00 4.01
1550 1753 5.323900 CACAATACAGGACGTTTATGCAAG 58.676 41.667 0.00 0.00 0.00 4.01
1551 1754 4.155099 CCACAATACAGGACGTTTATGCAA 59.845 41.667 0.00 0.00 0.00 4.08
1552 1755 3.687212 CCACAATACAGGACGTTTATGCA 59.313 43.478 0.00 0.00 0.00 3.96
1553 1756 3.064820 CCCACAATACAGGACGTTTATGC 59.935 47.826 0.00 0.00 0.00 3.14
1554 1757 4.331717 GTCCCACAATACAGGACGTTTATG 59.668 45.833 0.00 0.00 40.65 1.90
1555 1758 4.510571 GTCCCACAATACAGGACGTTTAT 58.489 43.478 0.00 0.00 40.65 1.40
1556 1759 3.929094 GTCCCACAATACAGGACGTTTA 58.071 45.455 0.00 0.00 40.65 2.01
1557 1760 2.774687 GTCCCACAATACAGGACGTTT 58.225 47.619 0.00 0.00 40.65 3.60
1558 1761 2.467566 GTCCCACAATACAGGACGTT 57.532 50.000 0.00 0.00 40.65 3.99
1561 1764 0.899720 TCCGTCCCACAATACAGGAC 59.100 55.000 0.00 0.00 45.49 3.85
1562 1765 1.191535 CTCCGTCCCACAATACAGGA 58.808 55.000 0.00 0.00 0.00 3.86
1563 1766 0.178068 CCTCCGTCCCACAATACAGG 59.822 60.000 0.00 0.00 0.00 4.00
1564 1767 0.178068 CCCTCCGTCCCACAATACAG 59.822 60.000 0.00 0.00 0.00 2.74
1565 1768 0.252330 TCCCTCCGTCCCACAATACA 60.252 55.000 0.00 0.00 0.00 2.29
1566 1769 0.906775 TTCCCTCCGTCCCACAATAC 59.093 55.000 0.00 0.00 0.00 1.89
1567 1770 1.887797 ATTCCCTCCGTCCCACAATA 58.112 50.000 0.00 0.00 0.00 1.90
1568 1771 1.768870 CTATTCCCTCCGTCCCACAAT 59.231 52.381 0.00 0.00 0.00 2.71
1569 1772 1.200519 CTATTCCCTCCGTCCCACAA 58.799 55.000 0.00 0.00 0.00 3.33
1570 1773 0.337082 TCTATTCCCTCCGTCCCACA 59.663 55.000 0.00 0.00 0.00 4.17
1571 1774 1.718280 ATCTATTCCCTCCGTCCCAC 58.282 55.000 0.00 0.00 0.00 4.61
1572 1775 2.047061 CAATCTATTCCCTCCGTCCCA 58.953 52.381 0.00 0.00 0.00 4.37
1573 1776 1.348036 CCAATCTATTCCCTCCGTCCC 59.652 57.143 0.00 0.00 0.00 4.46
1574 1777 2.047830 ACCAATCTATTCCCTCCGTCC 58.952 52.381 0.00 0.00 0.00 4.79
1575 1778 3.494573 GGAACCAATCTATTCCCTCCGTC 60.495 52.174 0.00 0.00 38.81 4.79
1576 1779 2.438392 GGAACCAATCTATTCCCTCCGT 59.562 50.000 0.00 0.00 38.81 4.69
1577 1780 2.706190 AGGAACCAATCTATTCCCTCCG 59.294 50.000 0.00 0.00 44.78 4.63
1578 1781 3.716872 TCAGGAACCAATCTATTCCCTCC 59.283 47.826 0.00 0.00 44.78 4.30
1579 1782 4.656112 TCTCAGGAACCAATCTATTCCCTC 59.344 45.833 0.00 0.00 44.78 4.30
1580 1783 4.410555 GTCTCAGGAACCAATCTATTCCCT 59.589 45.833 0.00 0.00 44.78 4.20
1581 1784 4.410555 AGTCTCAGGAACCAATCTATTCCC 59.589 45.833 0.00 0.00 44.78 3.97
1582 1785 5.129485 TCAGTCTCAGGAACCAATCTATTCC 59.871 44.000 0.00 0.00 44.14 3.01
1583 1786 6.227298 TCAGTCTCAGGAACCAATCTATTC 57.773 41.667 0.00 0.00 0.00 1.75
1584 1787 6.627087 TTCAGTCTCAGGAACCAATCTATT 57.373 37.500 0.00 0.00 0.00 1.73
1585 1788 6.385176 TGATTCAGTCTCAGGAACCAATCTAT 59.615 38.462 0.00 0.00 0.00 1.98
1586 1789 5.721480 TGATTCAGTCTCAGGAACCAATCTA 59.279 40.000 0.00 0.00 0.00 1.98
1587 1790 4.533707 TGATTCAGTCTCAGGAACCAATCT 59.466 41.667 0.00 0.00 0.00 2.40
1588 1791 4.836825 TGATTCAGTCTCAGGAACCAATC 58.163 43.478 0.00 0.00 0.00 2.67
1592 1795 5.006386 ACATTTGATTCAGTCTCAGGAACC 58.994 41.667 0.00 0.00 0.00 3.62
1594 1797 5.707298 GGAACATTTGATTCAGTCTCAGGAA 59.293 40.000 0.00 0.00 0.00 3.36
1598 1801 4.002982 CCGGAACATTTGATTCAGTCTCA 58.997 43.478 0.00 0.00 0.00 3.27
1602 1805 3.888930 ACAACCGGAACATTTGATTCAGT 59.111 39.130 9.46 0.00 0.00 3.41
1604 1807 3.634448 ACACAACCGGAACATTTGATTCA 59.366 39.130 9.46 0.00 0.00 2.57
1609 1812 5.808030 AGTTTTTACACAACCGGAACATTTG 59.192 36.000 9.46 3.91 0.00 2.32
1611 1814 5.585820 AGTTTTTACACAACCGGAACATT 57.414 34.783 9.46 0.00 0.00 2.71
1617 1820 5.116069 AGCATAAGTTTTTACACAACCGG 57.884 39.130 0.00 0.00 0.00 5.28
1618 1821 5.401079 CCAAGCATAAGTTTTTACACAACCG 59.599 40.000 0.00 0.00 0.00 4.44
1621 1851 5.907207 TGCCAAGCATAAGTTTTTACACAA 58.093 33.333 0.00 0.00 31.71 3.33
1624 1854 7.441017 AGATTTGCCAAGCATAAGTTTTTACA 58.559 30.769 0.00 0.00 38.76 2.41
1625 1855 7.814587 AGAGATTTGCCAAGCATAAGTTTTTAC 59.185 33.333 0.00 0.00 38.76 2.01
1632 1862 5.571784 TTCAGAGATTTGCCAAGCATAAG 57.428 39.130 0.00 0.00 38.76 1.73
1634 1864 5.419788 ACAATTCAGAGATTTGCCAAGCATA 59.580 36.000 0.00 0.00 38.76 3.14
1635 1865 4.222145 ACAATTCAGAGATTTGCCAAGCAT 59.778 37.500 0.00 0.00 38.76 3.79
1636 1866 3.575256 ACAATTCAGAGATTTGCCAAGCA 59.425 39.130 0.00 0.00 36.47 3.91
1637 1867 4.171754 GACAATTCAGAGATTTGCCAAGC 58.828 43.478 0.00 0.00 0.00 4.01
1638 1868 4.409570 CGACAATTCAGAGATTTGCCAAG 58.590 43.478 0.00 0.00 0.00 3.61
1640 1870 2.162208 GCGACAATTCAGAGATTTGCCA 59.838 45.455 0.00 0.00 0.00 4.92
1642 1872 3.754188 AGCGACAATTCAGAGATTTGC 57.246 42.857 0.00 0.00 0.00 3.68
1643 1873 5.793952 CAGAAAGCGACAATTCAGAGATTTG 59.206 40.000 0.00 0.00 0.00 2.32
1655 1885 5.989168 TGACTAAGAATTCAGAAAGCGACAA 59.011 36.000 8.44 0.00 0.00 3.18
1659 1889 7.763172 ATAGTGACTAAGAATTCAGAAAGCG 57.237 36.000 8.44 0.00 0.00 4.68
1660 1890 9.810545 ACTATAGTGACTAAGAATTCAGAAAGC 57.189 33.333 4.10 0.00 0.00 3.51
1695 1951 7.378181 ACACCACAAACTGGATTTTTATCATC 58.622 34.615 0.00 0.00 43.95 2.92
1698 1954 6.981722 AGACACCACAAACTGGATTTTTATC 58.018 36.000 0.00 0.00 43.95 1.75
1701 1957 6.379988 AGTTAGACACCACAAACTGGATTTTT 59.620 34.615 0.00 0.00 43.95 1.94
1708 1964 3.315191 CCCAAGTTAGACACCACAAACTG 59.685 47.826 0.00 0.00 32.69 3.16
1714 1970 4.015872 TCATTCCCAAGTTAGACACCAC 57.984 45.455 0.00 0.00 0.00 4.16
1718 1974 5.878116 CCGTTAATCATTCCCAAGTTAGACA 59.122 40.000 0.00 0.00 0.00 3.41
1719 1975 5.878669 ACCGTTAATCATTCCCAAGTTAGAC 59.121 40.000 0.00 0.00 0.00 2.59
1720 1976 6.057321 ACCGTTAATCATTCCCAAGTTAGA 57.943 37.500 0.00 0.00 0.00 2.10
1721 1977 6.150474 ACAACCGTTAATCATTCCCAAGTTAG 59.850 38.462 0.00 0.00 0.00 2.34
1722 1978 6.005198 ACAACCGTTAATCATTCCCAAGTTA 58.995 36.000 0.00 0.00 0.00 2.24
1723 1979 4.830600 ACAACCGTTAATCATTCCCAAGTT 59.169 37.500 0.00 0.00 0.00 2.66
1725 1981 6.503589 TTACAACCGTTAATCATTCCCAAG 57.496 37.500 0.00 0.00 0.00 3.61
1726 1982 6.896021 TTTACAACCGTTAATCATTCCCAA 57.104 33.333 0.00 0.00 0.00 4.12
1727 1983 7.469537 AATTTACAACCGTTAATCATTCCCA 57.530 32.000 0.00 0.00 0.00 4.37
1728 1984 9.292846 GTAAATTTACAACCGTTAATCATTCCC 57.707 33.333 20.95 0.00 33.88 3.97
1729 1985 9.292846 GGTAAATTTACAACCGTTAATCATTCC 57.707 33.333 25.59 2.91 35.37 3.01
1730 1986 9.843334 TGGTAAATTTACAACCGTTAATCATTC 57.157 29.630 25.59 6.85 35.98 2.67
1731 1987 9.849166 CTGGTAAATTTACAACCGTTAATCATT 57.151 29.630 25.59 0.00 35.98 2.57
1732 1988 9.016438 ACTGGTAAATTTACAACCGTTAATCAT 57.984 29.630 25.59 3.28 35.98 2.45
1733 1989 8.393671 ACTGGTAAATTTACAACCGTTAATCA 57.606 30.769 25.59 11.80 35.98 2.57
1734 1990 7.689400 CGACTGGTAAATTTACAACCGTTAATC 59.311 37.037 25.59 8.35 35.98 1.75
1735 1991 7.520686 CGACTGGTAAATTTACAACCGTTAAT 58.479 34.615 25.59 4.57 35.98 1.40
1736 1992 6.565623 GCGACTGGTAAATTTACAACCGTTAA 60.566 38.462 25.59 0.00 35.98 2.01
1737 1993 5.107143 GCGACTGGTAAATTTACAACCGTTA 60.107 40.000 25.59 5.92 35.98 3.18
1738 1994 4.319694 GCGACTGGTAAATTTACAACCGTT 60.320 41.667 25.59 6.17 35.98 4.44
1739 1995 3.187022 GCGACTGGTAAATTTACAACCGT 59.813 43.478 25.59 16.81 35.98 4.83
1740 1996 3.434299 AGCGACTGGTAAATTTACAACCG 59.566 43.478 25.59 21.55 35.98 4.44
1741 1997 5.151389 CAAGCGACTGGTAAATTTACAACC 58.849 41.667 25.59 14.64 35.37 3.77
1742 1998 5.151389 CCAAGCGACTGGTAAATTTACAAC 58.849 41.667 25.59 12.64 35.37 3.32
1743 1999 5.365403 CCAAGCGACTGGTAAATTTACAA 57.635 39.130 25.59 16.41 35.37 2.41
1754 2010 6.046593 TCATTTAGTTATACCAAGCGACTGG 58.953 40.000 1.88 1.88 42.68 4.00
1755 2011 7.715265 ATCATTTAGTTATACCAAGCGACTG 57.285 36.000 0.00 0.00 0.00 3.51
1756 2012 9.826574 TTAATCATTTAGTTATACCAAGCGACT 57.173 29.630 0.00 0.00 0.00 4.18
1757 2013 9.859692 GTTAATCATTTAGTTATACCAAGCGAC 57.140 33.333 0.00 0.00 0.00 5.19
1758 2014 8.757789 CGTTAATCATTTAGTTATACCAAGCGA 58.242 33.333 0.00 0.00 0.00 4.93
1759 2015 8.007716 CCGTTAATCATTTAGTTATACCAAGCG 58.992 37.037 0.00 0.00 0.00 4.68
1760 2016 8.833493 ACCGTTAATCATTTAGTTATACCAAGC 58.167 33.333 0.00 0.00 0.00 4.01
1776 2032 8.393671 ACTGGTAAATTTACAACCGTTAATCA 57.606 30.769 25.59 11.80 35.98 2.57
1777 2033 7.689400 CGACTGGTAAATTTACAACCGTTAATC 59.311 37.037 25.59 8.35 35.98 1.75
1778 2034 7.520686 CGACTGGTAAATTTACAACCGTTAAT 58.479 34.615 25.59 4.57 35.98 1.40
1779 2035 6.565623 GCGACTGGTAAATTTACAACCGTTAA 60.566 38.462 25.59 0.00 35.98 2.01
1780 2036 5.107143 GCGACTGGTAAATTTACAACCGTTA 60.107 40.000 25.59 5.92 35.98 3.18
1781 2037 4.319694 GCGACTGGTAAATTTACAACCGTT 60.320 41.667 25.59 6.17 35.98 4.44
1783 2039 3.434299 AGCGACTGGTAAATTTACAACCG 59.566 43.478 25.59 21.55 35.98 4.44
1784 2040 5.151389 CAAGCGACTGGTAAATTTACAACC 58.849 41.667 25.59 14.64 35.37 3.77
1785 2041 5.151389 CCAAGCGACTGGTAAATTTACAAC 58.849 41.667 25.59 12.64 35.37 3.32
1797 2053 6.046593 TCATTTAGTTATACCAAGCGACTGG 58.953 40.000 1.88 1.88 42.68 4.00
1798 2054 7.715265 ATCATTTAGTTATACCAAGCGACTG 57.285 36.000 0.00 0.00 0.00 3.51
1823 2079 9.720769 TGGAACAAAAACAAAATACCAAGTTAA 57.279 25.926 0.00 0.00 31.92 2.01
1824 2080 9.152595 GTGGAACAAAAACAAAATACCAAGTTA 57.847 29.630 0.00 0.00 44.16 2.24
1825 2081 8.035165 GTGGAACAAAAACAAAATACCAAGTT 57.965 30.769 0.00 0.00 44.16 2.66
1826 2082 7.603963 GTGGAACAAAAACAAAATACCAAGT 57.396 32.000 0.00 0.00 44.16 3.16
1846 2102 8.771521 ATTGATATCCATCTTTGAAATGTGGA 57.228 30.769 12.01 12.01 42.62 4.02
1848 2104 8.761497 GCAATTGATATCCATCTTTGAAATGTG 58.239 33.333 10.34 0.00 31.79 3.21
1850 2106 9.542462 AAGCAATTGATATCCATCTTTGAAATG 57.458 29.630 10.34 0.00 31.79 2.32
1854 2110 8.301720 GCATAAGCAATTGATATCCATCTTTGA 58.698 33.333 10.34 0.00 41.58 2.69
1855 2111 8.304596 AGCATAAGCAATTGATATCCATCTTTG 58.695 33.333 10.34 3.66 45.49 2.77
1856 2112 8.418597 AGCATAAGCAATTGATATCCATCTTT 57.581 30.769 10.34 0.00 45.49 2.52
1857 2113 8.304596 CAAGCATAAGCAATTGATATCCATCTT 58.695 33.333 10.34 2.90 45.49 2.40
1858 2114 7.450634 ACAAGCATAAGCAATTGATATCCATCT 59.549 33.333 10.34 0.00 45.49 2.90
1859 2115 7.600065 ACAAGCATAAGCAATTGATATCCATC 58.400 34.615 10.34 0.00 45.49 3.51
1860 2116 7.534723 ACAAGCATAAGCAATTGATATCCAT 57.465 32.000 10.34 0.00 45.49 3.41
1861 2117 6.964807 ACAAGCATAAGCAATTGATATCCA 57.035 33.333 10.34 0.00 45.49 3.41
1862 2118 9.185192 GTTTACAAGCATAAGCAATTGATATCC 57.815 33.333 10.34 0.00 45.49 2.59
1863 2119 9.734620 TGTTTACAAGCATAAGCAATTGATATC 57.265 29.630 10.34 0.00 45.49 1.63
1866 2122 9.439500 AATTGTTTACAAGCATAAGCAATTGAT 57.561 25.926 19.68 0.00 45.95 2.57
1867 2123 8.830201 AATTGTTTACAAGCATAAGCAATTGA 57.170 26.923 19.68 0.00 45.95 2.57
1868 2124 8.710551 TGAATTGTTTACAAGCATAAGCAATTG 58.289 29.630 22.72 0.00 46.83 2.32
1870 2126 8.830201 TTGAATTGTTTACAAGCATAAGCAAT 57.170 26.923 9.92 9.92 43.60 3.56
1871 2127 8.830201 ATTGAATTGTTTACAAGCATAAGCAA 57.170 26.923 1.50 6.98 45.49 3.91
1872 2128 8.087136 TGATTGAATTGTTTACAAGCATAAGCA 58.913 29.630 1.50 1.41 45.49 3.91
1873 2129 8.375465 GTGATTGAATTGTTTACAAGCATAAGC 58.625 33.333 0.00 0.00 40.84 3.09
1874 2130 9.630098 AGTGATTGAATTGTTTACAAGCATAAG 57.370 29.630 0.00 0.00 40.84 1.73
1875 2131 9.979578 AAGTGATTGAATTGTTTACAAGCATAA 57.020 25.926 0.00 0.00 40.84 1.90
1876 2132 9.979578 AAAGTGATTGAATTGTTTACAAGCATA 57.020 25.926 0.00 0.00 40.84 3.14
1877 2133 8.891671 AAAGTGATTGAATTGTTTACAAGCAT 57.108 26.923 0.00 0.00 40.84 3.79
1878 2134 9.462174 CTAAAGTGATTGAATTGTTTACAAGCA 57.538 29.630 1.50 0.00 39.47 3.91
1879 2135 8.427774 GCTAAAGTGATTGAATTGTTTACAAGC 58.572 33.333 1.50 0.00 39.47 4.01
1880 2136 9.462174 TGCTAAAGTGATTGAATTGTTTACAAG 57.538 29.630 1.50 0.00 39.47 3.16
1881 2137 9.809096 TTGCTAAAGTGATTGAATTGTTTACAA 57.191 25.926 0.00 0.00 40.51 2.41
1882 2138 9.243637 GTTGCTAAAGTGATTGAATTGTTTACA 57.756 29.630 0.00 0.00 0.00 2.41
1883 2139 8.699749 GGTTGCTAAAGTGATTGAATTGTTTAC 58.300 33.333 0.00 0.00 0.00 2.01
1884 2140 8.417106 TGGTTGCTAAAGTGATTGAATTGTTTA 58.583 29.630 0.00 0.00 0.00 2.01
1885 2141 7.271511 TGGTTGCTAAAGTGATTGAATTGTTT 58.728 30.769 0.00 0.00 0.00 2.83
1886 2142 6.815089 TGGTTGCTAAAGTGATTGAATTGTT 58.185 32.000 0.00 0.00 0.00 2.83
1887 2143 6.403866 TGGTTGCTAAAGTGATTGAATTGT 57.596 33.333 0.00 0.00 0.00 2.71
1888 2144 7.894376 AATGGTTGCTAAAGTGATTGAATTG 57.106 32.000 0.00 0.00 0.00 2.32
1889 2145 9.643693 CTAAATGGTTGCTAAAGTGATTGAATT 57.356 29.630 0.00 0.00 0.00 2.17
1890 2146 8.253113 CCTAAATGGTTGCTAAAGTGATTGAAT 58.747 33.333 0.00 0.00 0.00 2.57
1891 2147 7.450014 TCCTAAATGGTTGCTAAAGTGATTGAA 59.550 33.333 0.00 0.00 37.07 2.69
1892 2148 6.945435 TCCTAAATGGTTGCTAAAGTGATTGA 59.055 34.615 0.00 0.00 37.07 2.57
1900 2156 8.424918 TGACAAAATTCCTAAATGGTTGCTAAA 58.575 29.630 0.00 0.00 37.07 1.85
1904 2160 8.655970 GTTATGACAAAATTCCTAAATGGTTGC 58.344 33.333 0.00 0.00 37.07 4.17
1952 2208 4.059773 TGTGAGAAGGCCCCAAAAATAT 57.940 40.909 0.00 0.00 0.00 1.28
1957 2213 0.178964 CCTTGTGAGAAGGCCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
1977 2233 6.261435 CCCTAATTTTTAAAGGGGGTCTTCT 58.739 40.000 2.61 0.00 45.43 2.85
1978 2234 6.540438 CCCTAATTTTTAAAGGGGGTCTTC 57.460 41.667 2.61 0.00 45.43 2.87
2096 2353 2.507110 AAGATCGTGGGGTGCAGACG 62.507 60.000 0.00 0.00 34.38 4.18
2131 2388 8.241367 GCTAAATAAGATCGTTTCCCTCAAAAA 58.759 33.333 0.00 0.00 0.00 1.94
2132 2389 7.610305 AGCTAAATAAGATCGTTTCCCTCAAAA 59.390 33.333 0.00 0.00 0.00 2.44
2133 2390 7.065803 CAGCTAAATAAGATCGTTTCCCTCAAA 59.934 37.037 0.00 0.00 0.00 2.69
2134 2391 6.538742 CAGCTAAATAAGATCGTTTCCCTCAA 59.461 38.462 0.00 0.00 0.00 3.02
2135 2392 6.049149 CAGCTAAATAAGATCGTTTCCCTCA 58.951 40.000 0.00 0.00 0.00 3.86
2136 2393 6.281405 TCAGCTAAATAAGATCGTTTCCCTC 58.719 40.000 0.00 0.00 0.00 4.30
2137 2394 6.235231 TCAGCTAAATAAGATCGTTTCCCT 57.765 37.500 0.00 0.00 0.00 4.20
2138 2395 5.050023 GCTCAGCTAAATAAGATCGTTTCCC 60.050 44.000 0.00 0.00 0.00 3.97
2139 2396 5.755861 AGCTCAGCTAAATAAGATCGTTTCC 59.244 40.000 0.00 0.00 36.99 3.13
2140 2397 6.074034 GGAGCTCAGCTAAATAAGATCGTTTC 60.074 42.308 17.19 0.00 39.88 2.78
2141 2398 5.755861 GGAGCTCAGCTAAATAAGATCGTTT 59.244 40.000 17.19 0.00 39.88 3.60
2142 2399 5.293560 GGAGCTCAGCTAAATAAGATCGTT 58.706 41.667 17.19 0.00 39.88 3.85
2143 2400 4.262249 GGGAGCTCAGCTAAATAAGATCGT 60.262 45.833 17.19 0.00 39.88 3.73
2144 2401 4.021544 AGGGAGCTCAGCTAAATAAGATCG 60.022 45.833 17.19 0.00 39.88 3.69
2145 2402 5.237048 CAGGGAGCTCAGCTAAATAAGATC 58.763 45.833 17.19 0.00 39.88 2.75
2146 2403 4.504689 GCAGGGAGCTCAGCTAAATAAGAT 60.505 45.833 17.19 0.00 39.88 2.40
2147 2404 3.181461 GCAGGGAGCTCAGCTAAATAAGA 60.181 47.826 17.19 0.00 39.88 2.10
2148 2405 3.137533 GCAGGGAGCTCAGCTAAATAAG 58.862 50.000 17.19 0.00 39.88 1.73
2149 2406 3.199880 GCAGGGAGCTCAGCTAAATAA 57.800 47.619 17.19 0.00 39.88 1.40
2150 2407 2.918712 GCAGGGAGCTCAGCTAAATA 57.081 50.000 17.19 0.00 39.88 1.40
2151 2408 3.796764 GCAGGGAGCTCAGCTAAAT 57.203 52.632 17.19 0.00 39.88 1.40
2165 2422 1.704007 GGGAATGGGGAGAGAGCAGG 61.704 65.000 0.00 0.00 0.00 4.85
2178 2435 2.124570 CCACCTCGCCTGGGAATG 60.125 66.667 0.00 0.00 0.00 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.