>input_sequence_86211
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--------------------------------------------------------------------ATGGTGATTAAT
GGCGACGCACCTGCAAGAGGGAGTGCAGCAGCTGCGGCAAGCTTGCGCAGACGTAGAACCACCAGCGGTGCTGCTGCTGG
AGGTGGTGGTGGCGCCAGTACGATGCTTCAGTTCTACACTGACGAGGCTGCTGGGCGCAAGATGTCCCCAAATGCTGTTC
TGATCATGAGCATAGGGTTTGTTGCCGTCGTTGCTGTGCTCCATGTTTTCGGCAAGCTTTACCGTTAG------------
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>chr5B_1_TraesCS5B01G013400
GGAACTGCGGCGCCCGGGGCTGGGCGGGATCGGGGGAGGGGGAGGAGATATGTGACACGATTTTAGACGTG-----TGTG
TGTGTGCGCTTCCGCTGCGATTTTCCTGCTGCTTTGTTGTGCTACACATGCAAGAATTGCTAATGCAGATCCTTATAGTT
TTGCTGGATGTGAATTTTGTTCTGATTGCTGATTGATAAAGAGA--------GGTGACGGCTGGGAAAGAGATA------
GAGGTGCTGATGCTGACTTCTGCATTTTCTTCTCTG-GATATTGCAACCGCTGTTTCTGTTTCTGCTTCA----------
--AGAAACC------GACTGCTCATATAAAGAAAGAT--G----------------------AGATTGGGAGAGATGTAC
TATAGTTTCTATTGGTTTATAGCTGTGAGATTTTGCTTGTGCCGTTTTGATTTGTTTGTTCTCCAGAGCATCCGTGATGT
TACATCCAAGTTTACTCATCCTTGCACTTTGAGT--TGACTTTTGACAGTGAAGAAAAACATTGGGGACTATGTAGTCTG
AGATGCTATCATCTTCTTCTTTTG--TTTAATTTGCTTGTTTGTTTGTTTAT----GGCTTTTCGTTGCTCCAAGTCATG
GATCGATGATGTGATTGTAAACTGCGTTATCTATCTCGAA--CTTCTCAAGTACTGAAGAAAACATTACCTGCTGAGATC
CAAGGCACACTTGAAGTTCTTAACCTTTCCTTATTGTTTTGT------------------------AG------------
------AG-GTTTTTTTGTTCTCTGAGTAGTAT------------------------------------------ACTTT
GCTGGCTTTTGACTTCCCTATGTTTGCAAAAAA--GTAAGTCATATAAT-----GGTATAATGTACAGTTGTGTGTCGGT
CCGT---CTGTCTTTCTTTCTAGACACGAGATGTTCGATCGCATGTTCATCCATAGATTCTGAATTTGGTTTTGTATCCA
TAGATTCCGAGTTTGGTTTCGTAGATTCAGGTTGGGTCAT------TCGGAACACTCTTTATGTTTTGGTTATTTATGAT
-------TTACAAGCATTTTGATCAG--------AATTCATACTTCCATGCAGATAGATAAGAACAAGATGGTGATTAAT
GGCGACGCACCTGCAAGAGGGAGTGCAGCAGCTGCGGCAAGCTTGCGCAGACGTAGAACCACCAGCGGTGCTGCTGCTGG
AGGTGGTGGTGGCGCCAGTACGATGCTTCAGTTCTACACTGACGAGGCTGCTGGGCGCAAGATGTCCCCAAATGCTGTTC
TGATCATGAGCATAGGGTTTGTTGCCGTCGTTGCTGTGCTCCATGTTTTCGGCAAGCTTTACCGTTAGGTTCCATATGCA
AGCTGCCCCTATGAACAGATGAACCCATAGACTTAAATAACTGCATAGCAAATGACTGTCGGATCCTGA-----AGACAT
TTCCATATTAGCATATAAGTTTATATACCTGATAA--TATATACTGAGATGAGACG----TTATGGTCGAATCCTTGCAA
GAAGGTGCTTTGGCTTGTCACTCGTTCTTTATTACAGTTA---ATCTTCCTGGGTCCGTGCTTTGTTTCAAATATATGTT
GCATACAAGCCATTGCTGTAGTATTAGACTCCCTCCGTCCGATAACAAAAGACGTTTTTGCAACTTATGTAGCTTGCATA
AACGTCCTGTATTGTGGGACGGAGGGAATAGATTGGTTCCTGAGACTGAATCAAATGTTCC-------------------
--------GGTTGTGTAAAAACTTATGCTTGGCAAATCTCTGAATTGTCGCTTTCTGAATTCTTAGTCACTATAG-----
---------------------TAGTTAACTGATGATAAAAATCCAGTTTGTGGTGTCTAACTTGGGAATGATTAACGGTT
GTAAATTTACCAGTCGCTTGGTATAACTAAATGATTAACGGTTGTAAATTTACCAGTCGCTTGGTATAACTAAATGATTT
AACTTGGTATTTTGTTTTTGTTCCACATTTCAAAGATGGATATCAATTGCTTATGCTTGTAAACAATTCAATCACTTTAG
CAACCATTTAGGAATTTTGTCATAACACCACAAATATTTCAAATTCAATATTTTTGGGGCCTTCTCACAAGGAGAAGACC
CCCTTTAAAAATTAGGGTATGCTGCTTAATGTGGCGTGCACACGGTATTCTTTAGTAAAAGGCGAAAGAATAGTTCGCTT
TGTGCTCACCACG-CAGCTGCGTGCCTTTCACCGTCTGCACCCCACGATCTTATTTAGCTTTTTTTTTTTTTGAGGGAAA
CGATCTTATTTAGCTGAGCTCCCTGCTCTCTCCCCATTCCCAGGCGAGGTGGGACTAAACGATTGGCACCTTTTTTGTTT
TTCTTGTAACAATGGG
>chr5D_48
-----------------------------------------------ATATGGGACATGATTTTAGCCGTGTCCCGTGTG
TGTGTGTGCTTCCGCTGCGATTTTCCTGCTGCTTTGTTGTGCCACACATACAAGAGTTGCTAATGCAGATGCTTATAGGT
TTGCTGCATGTTAATTTTGTTGTGATTACCGATTGAGAAAGAGA--------GGCCACGGCTGGGGGAGAGAGA------
GAGAGG-----------TGCTGCTTTTTCTGCTTCAAGATATTGCAACCGTTGTTTGTGTTTCTGCTTCA----------
--AGAAATTGAGAGAGAATTCTCATACAAAGAAAGAGATAGATTGGTAGAAATGTATATTGTAGATTGGGAGAAATGTA-
--TATTGTCTATTAATTTGTAGCTGTGAGATTTTGCTTGTGCCGTTTTGATTAGTTTGTTCTCGAGAGCATCCATGATGT
TACATCCAAGTTTACTCATCCTTGCACTTTGAGTTTTGACTTTTGACAGTGAAGAAAAACATTGGGGACTATGTAGTCTG
AGATGCTCCCATCTTCTTTCTTTTATTTTAATTTGGTTGTTTGTTTGTTTGTTTATGGCTTTCTGTTGCT-CAAGTCATG
GATCGATGATGTGATTGTTAACTGCGTTATCTATCTTGAA--CTTCTCAAGTACTGAAGAAAACATTACCTGCTGAGATC
CAAGGCACCCTTGAAGTTCTTAACCTTTCCTTATTGTTTTGTCCGATTAACTTT------------------------GA
CAGTCAAG-GTTTTTTT--TCCCTGAGTAGTAT------------------------------------------ACCTT
GCTGGCTTTTGACTTCCGTATAGTTGCAAAAAAAAGTAAGTTATATAATAATATGGTATAATGTACAGTTGCGTGTCGGT
CCGT---CCGTCTTTCTTTCTAGTCATGTGATGTTCGATTGCGTGTTCATCCATAGAATCCATGTTTGGTTTCTTATCCA
TAGGTTCCGAGTTTGGTTTCGTAGATTCAGGTTGGGTCAT------TCATAACACTCTTTATGTTTTGGTCATTTATGAT
---AGTGTTACAAGCCTTCTGATCAG--------AACTCATACTTCTATGCAGATAAATAAGAACAAGATGGTGATTAAT
GGTGATGCACCTGCAAGAGGGAGTGCAGCAGCTGCGGCAAGCTTGCGCAGACGTAGAACCACCAGCGGTGCTGCTG---G
AGGTGGTGGTGGCGCCAGTACAATGCTTCAGTTCTACACTGACGAGGCTGCTGGGCGCAAGATGTCGCCAAATGCTGTTC
TGATCATGAGCATAGGGTTTGTTGCCGTCGTTGCTGTGCTCCATGTTTTCGGCAAGCTGTACCGTTAGGTTCCATATGCA
AGGTGCACCT-TGAACAGAGGAACTCATAGACTTAAATAACTGCATAGCAAATGACTGTCGTATCCTGA-----AGACAT
TTCCATATTACCATATAAGTTTATATACCTGATAA--TATATACTGAGATGAGAAGTTAATTATGGTCGAATACTTGCAA
GAAGC----TTGGCTGAGGACTTGTTCTTTATTACAGTTATTAATTTTCCTGAGTCA----TTTGTTTCAA--ATATGTT
CCATACAAGCCATTGCTGTTGTTTTACAC---------------------------------------------------
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>chr5A_76
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TGTGCGTGCTGCTGCTGCGATTTTCCTGCTGCCTTGTTGTGCGACACATACAAGAGTTGCTAATACACATGTTTATAGGT
CTGCTGCATGTGAATCTTGTTCTGAATGCTGATTGCTGATTAAGAAAGGGAGGGCCACGGCTGGGAGATAGATAGATAGA
GAGGCGCTGATGCTGACTGCTGCGTTTTCTTCTCTG-GATATTGCAACTGCTGTTTGTCTCTCTGCTTCACGGAATAGAG
AGAGACATTGAGAGAGACTGCTCATATAAAGAAAAGAGAG----------------------ATATTGCGAGAAATGTC-
--TATTGTCTATTGGTTTGTAGCTGCGAGATTTTGCTTGTGCCGTTTTGATTTGTTTGTTCTCGAGAGCATCCGTGATGT
TACATCCACTTTTACTCATCCTTGCACTTTGAATTTTGACTTTCGACAGTGAAGAAAAACATTGGGGACTACGTAGTCTG
AGATGCTCGTGCCTTCTTTCTTGTATCGTAATTTGGTTATTTGTTTGTTTGT----TGCTTTTCGTTGCTCCAAGTCATG
GATCAATGATGTGATTGTTAACTGCGTTATCTATCTTGAA--CTTCTCAAGTACTGAAGAAAACATTACCTGCTGAGATC
CAAGGCACCCTTGAAGTTCTTAACCTTTCGTTATTGTTTTGT------------------------ACAATTAACTTGGA
CAGTCAAGAGGTTTTATTTTCTCTGATTAATATACTCTGCTTATGACTCTGAGCTGAAGCATTGTACTGCTTATGACTCT
GCTGCCTTTTGACTTCCGTATGTCTGCAAAAAA--GTGTG--------TATAATGGTATAACATAGCGTTGTGT----GT
CGTTCGTCTGACTTTCTTTCTAGACATGTGATGTC-----------------------------TTTGGTTTTGTATCCA
TAGATTCCGAGTTTGGTTTCGTAGATTCAGGTTGGGTCATGCTGCTTCATAACTCTCTTTATGTTTTCGTCATTTATGAT
ACTAGTGTTACAAGCCTTTTGATGATCTGATCAAAACTCGTACTTTCATGCAGATAGATAAGAACAAGATGGTGATTAAT
GGTGATGCACCTGCAAGAGGGAGTGCAGCAGCTGCTGCAAGCTTGCGCAGACGTAGAACCACCAGCGGTGCTGCTGCTGG
AGGTGGCGGTGGCGCCAGTACAATGCTTCAGTTCTACACCGATGAGGCTGCTGGGCGCAAGATGTCCCCAAATGCTGTTC
TGATCATGAGCATAGGGTTTGTTGCTGTCGTTGCTGTGCTCCATGTTTTTGGCAAGCTCTACCGTTAGGTTCCATATGCA
AGCTGCACCTATGAACAGAGGAACCCATAGACTTAAATAACTACATAGCCAATGGCTGTCGGATCCTGA-----AGACAT
CTCGATATTACCATATAAGTTTATATACCTGATAA--TATATACTGAGATGAGACG----TTATGGTCGAATCCTTGCAA
GAAGGTGCTTTGGCCTGTCAGTTGTTCTTTATTACAGTTATGAATCTTCCTGGGTCCGTGCTTTGTTCCAA--ATATGTT
GCATACAAGCCATTGATGTAGTATTA------------------------------------------------------
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>chr5D_352
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-------------GGTTTGTAGCTGCGAGATTTTGCTTGTGCCGTTTAGATTTGTTTGTTCTCGAGAGCATCCGTGATGT
TACATCCACTTTTACCCATCCTTGCACTCTGAGTTTTGACTTTTGACAGTGAAGAAAAACATTGGGGACTATGTAGTCTG
AGATGCTATCATCTTCTTCTTTTG--CTTAATTTGCTTGTTTGTTTGTTTAT----GGCTTTTCGTTGCTCCAAGTCATG
GATCGATGATGTGATTCTTAACTGCGTTATCTATCTTTAAATCTTCTCAAGTACTGAAGAAAACATTACCTGCTGAGATC
CAAGGCACCCTTGAAGTTCTTAACCTTTCCTTATTGTTTTGTCCGATTAACTTTCCTTGACAGTCAAG------------
------AG-GTTTTTTTTCCCTCCGAGTAGTAT------------------------------------------ACTTT
GCTGGCTTTTGACTTCTGTATGTTTGCAAAAAA--GTAAGTTATGTAATAATATGGTATAATGTTCAGTTGCGT----GT
CGGT---CCGTCTTTCTTTCTAGACATGTGATGTTCGATCGCGTGTTCATCCATAGAATCCATGTTTGGTTTTGTATCCA
TAGGTTCCGAGTTTGGTTTCGTAGATTCAGGTTGGGTCAT------TCATAACACTCTTTATGTTCTGGTCATTTATGAT
ACTAGTGTTACAAGCCTTCTGATCAG--------AACTCGTACTTCCATGCAGATAGACAAGAACAAGATGGTGATTAAT
GGTGATGCACTTGCAAGGGGGAGTGCAGCAGCTGCTGCAAGCTTGCGCAGACGTAGAACCACCAGCGGTGCTGC---TGG
AGGTGGTGGTGGTGCCAGTACAATGCTTCAGTTCTACACTGATGAGGCTGCTGGGCGCAAGATGTCCCCAAATGCTGTTC
TGATCATGAGCATAGGGTTTGTTGCCGTCGTTGCTGTGCTCCATGTTTTCGGCAAGCTGTACCGTTAGGTTCCATATGCA
AGCTGCATCTATGAACAGAGGAACCCATAGACTTAAATAATTGCATAGCAGATGACTGTCGGATCCTGAAAAGAAGACAT
TTCCATATTACCATATAAGTTTATATACCTGATAATATATATACTGAGATGAGACG----TTATGGTCGAATCCTTGCAA
GAAGGTGCTTTGGCTGGTCACTAGTTCTGATATGTTA------------------------TTTATTGCAA--ATATATT
GCATACAAGCCATTGCTGTAGTTTTACAT---------------------------------------------------
-------------------------------ATTAGATCCCGAGTCAGAATGACATGTTTTTTTTTTAAACGAAGAATGA
CATGTTCTGGCTGCATAAAAATTATCCTTCGCAAAATCTCTGAAGTGTGATTTGTAACAGTCCAGTGCTGGGATAGGAAC
TGTATGCCAGTCCCTAGTCCCTAGTTAACTCATCATTAAAATCAAGTTTATGGCTGACTA-------------------T
GTAAATTTAGTCTCTTTGTGTGTATCATTAACCGAATAGAATGCCTAACATGGTA-------------------------
------GTATCTTGTTTCTGTCCTAG------------------------------------------CAATCACATTAA
CAACCATTTAGGCATTTTGTCAAAATACCATGAATATTTCAAATTCAGTATTGTTGGGGCCTTCTCACAAGG---AGACA
CCCTTTAAAAATTAGGGTATGCTGCTTAGTGTGGCGTGCACACGGTATTCTTTAGTAAAAGGCGAAAGAATAGTTTGCTT
TGTGCTCACCACGACAGCTGTGTGCCTTTCACTGTCTGCACCCCACACTCTTATGTGCCC--------------------
---------------GAGCTCGCTGCTCTCTCCC-ATTCCCAGGCGAGGTGGGACTAAACGAAGGGCACTTGTTTTTTTT
TTTTTT----------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----S----S--------S-------------
------S-----------------------------------S------S-----S--------------S-------S-
------S-----------------------------------------------SS----------S-------------
----S-------------S----S--------------------------------S-----------------------
-------SS---------------------------S------------------------------------S-----S
SS--S-S-----------S--------------------------------------------S----------------
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------------------S-----------------S-------------------------------------------
--------S-----------------------------------------------------------------------
-----------------S--------------------------------------------------------------
-----------------S-----------------------S--------------------------------------
--------------------------S-S-------------S--------------S--SSSS----------------
------------------------------------------------SS--------------------S---------
---------------S--------------------S-------------------------------------------
--S--S--------------------------------------------------------------------------
---------------------S----------------------------------------------------------
----------------------------------------------------------S---------------------
------S------------S------------------------------------------------------------
----------S---------------------------------------------------------------------
----------------------S------------------------------------------------SS-------
--------------------------S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S-S---S---S-S----S-S-----SS-------------------
----------S--SS------S-SSSSS-S-SS-----------S---SSS--SSSSS-S--SSSSS-SSSSSSS-----
------------------------------S--S--S------S-----S---SSSSSS-SSSSSSSSSSSSSSSSSSS-
---------SSSSSSSSS--SSSSSSS-S--SSSSSS-SSS-SSSS--SS-SSS-SSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSS----S------S---S-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------S---S
------------S---------S--S----SS---------------S----S-------------------SSS----S
----------------------------S----------------------------------------------S----
--------------------S-----------S-------------SS------S-SS-SSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS------S------------S---------------------------SS-----S-S----S---
--S--SSSSSSSSSSS
>forward_729
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---------------------------------------------------------------------CTGCTGAGATC
CAAGGCACA-----------------------------------------------------------------------
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>reverse_1766
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-----CCTGTATTGTGGGACGGAGG-------------------------------------------------------
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