Multiple sequence alignment - TraesCS5B01G009200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G009200 chr5B 100.000 2633 0 0 1 2633 9297720 9300352 0.000000e+00 4863
1 TraesCS5B01G009200 chr5B 93.009 329 19 4 362 686 691456895 691456567 6.590000e-131 477
2 TraesCS5B01G009200 chr5B 91.014 345 26 3 363 702 57619186 57619530 6.640000e-126 460
3 TraesCS5B01G009200 chr5D 88.803 1545 86 40 1090 2620 9290951 9292422 0.000000e+00 1814
4 TraesCS5B01G009200 chr5D 85.172 580 40 20 688 1252 9290490 9291038 1.060000e-153 553
5 TraesCS5B01G009200 chr5D 89.493 276 16 5 89 363 9290226 9290489 1.170000e-88 337
6 TraesCS5B01G009200 chr5A 87.063 1546 98 47 1090 2620 7487295 7488753 0.000000e+00 1653
7 TraesCS5B01G009200 chr5A 82.696 601 37 24 685 1252 7486816 7487382 3.070000e-129 472
8 TraesCS5B01G009200 chr5A 86.301 292 16 12 89 365 7486535 7486817 1.980000e-76 296
9 TraesCS5B01G009200 chr3D 93.293 328 18 2 364 687 7429105 7428778 5.100000e-132 481
10 TraesCS5B01G009200 chr2A 92.966 327 19 2 364 686 301240561 301240235 8.530000e-130 473
11 TraesCS5B01G009200 chr7D 92.705 329 20 4 364 688 100765780 100765452 3.070000e-129 472
12 TraesCS5B01G009200 chr7D 92.470 332 20 4 361 687 522870432 522870763 1.100000e-128 470
13 TraesCS5B01G009200 chr1B 92.515 334 18 6 359 686 640026964 640027296 3.070000e-129 472
14 TraesCS5B01G009200 chr6D 92.683 328 20 4 363 686 304698233 304697906 1.100000e-128 470
15 TraesCS5B01G009200 chr7A 92.121 330 22 2 362 687 400048377 400048048 1.850000e-126 462


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G009200 chr5B 9297720 9300352 2632 False 4863.000000 4863 100.000000 1 2633 1 chr5B.!!$F1 2632
1 TraesCS5B01G009200 chr5D 9290226 9292422 2196 False 901.333333 1814 87.822667 89 2620 3 chr5D.!!$F1 2531
2 TraesCS5B01G009200 chr5A 7486535 7488753 2218 False 807.000000 1653 85.353333 89 2620 3 chr5A.!!$F1 2531

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
299 311 0.031178 CTGGTTCACAGCAGGCAAAC 59.969 55.0 0.0 0.0 43.72 2.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1873 2004 0.042967 GAAATCGGCGATGTTCGAGC 60.043 55.0 24.73 1.1 43.74 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.348036 AGGAAGGTGGTTGTGACTAGC 59.652 52.381 0.00 0.00 35.27 3.42
21 22 1.429463 GAAGGTGGTTGTGACTAGCG 58.571 55.000 0.00 0.00 39.42 4.26
22 23 1.000506 GAAGGTGGTTGTGACTAGCGA 59.999 52.381 0.00 0.00 39.42 4.93
23 24 1.045407 AGGTGGTTGTGACTAGCGAA 58.955 50.000 0.00 0.00 39.42 4.70
24 25 1.145803 GGTGGTTGTGACTAGCGAAC 58.854 55.000 0.00 0.00 0.00 3.95
25 26 1.539496 GGTGGTTGTGACTAGCGAACA 60.539 52.381 0.00 0.00 0.00 3.18
26 27 1.792949 GTGGTTGTGACTAGCGAACAG 59.207 52.381 0.00 0.00 0.00 3.16
27 28 1.684450 TGGTTGTGACTAGCGAACAGA 59.316 47.619 0.00 0.00 0.00 3.41
28 29 2.299013 TGGTTGTGACTAGCGAACAGAT 59.701 45.455 0.00 0.00 0.00 2.90
29 30 2.668457 GGTTGTGACTAGCGAACAGATG 59.332 50.000 0.00 0.00 0.00 2.90
30 31 2.654749 TGTGACTAGCGAACAGATGG 57.345 50.000 0.00 0.00 0.00 3.51
31 32 2.167662 TGTGACTAGCGAACAGATGGA 58.832 47.619 0.00 0.00 0.00 3.41
32 33 2.560981 TGTGACTAGCGAACAGATGGAA 59.439 45.455 0.00 0.00 0.00 3.53
33 34 3.006430 TGTGACTAGCGAACAGATGGAAA 59.994 43.478 0.00 0.00 0.00 3.13
34 35 3.994392 GTGACTAGCGAACAGATGGAAAA 59.006 43.478 0.00 0.00 0.00 2.29
35 36 3.994392 TGACTAGCGAACAGATGGAAAAC 59.006 43.478 0.00 0.00 0.00 2.43
36 37 3.994392 GACTAGCGAACAGATGGAAAACA 59.006 43.478 0.00 0.00 0.00 2.83
37 38 4.385825 ACTAGCGAACAGATGGAAAACAA 58.614 39.130 0.00 0.00 0.00 2.83
38 39 5.003804 ACTAGCGAACAGATGGAAAACAAT 58.996 37.500 0.00 0.00 0.00 2.71
39 40 4.164822 AGCGAACAGATGGAAAACAATG 57.835 40.909 0.00 0.00 0.00 2.82
40 41 3.057315 AGCGAACAGATGGAAAACAATGG 60.057 43.478 0.00 0.00 0.00 3.16
41 42 3.057596 GCGAACAGATGGAAAACAATGGA 60.058 43.478 0.00 0.00 0.00 3.41
42 43 4.726416 CGAACAGATGGAAAACAATGGAG 58.274 43.478 0.00 0.00 0.00 3.86
43 44 4.379813 CGAACAGATGGAAAACAATGGAGG 60.380 45.833 0.00 0.00 0.00 4.30
44 45 3.434309 ACAGATGGAAAACAATGGAGGG 58.566 45.455 0.00 0.00 0.00 4.30
45 46 3.075882 ACAGATGGAAAACAATGGAGGGA 59.924 43.478 0.00 0.00 0.00 4.20
46 47 4.088634 CAGATGGAAAACAATGGAGGGAA 58.911 43.478 0.00 0.00 0.00 3.97
47 48 4.713321 CAGATGGAAAACAATGGAGGGAAT 59.287 41.667 0.00 0.00 0.00 3.01
48 49 4.958581 AGATGGAAAACAATGGAGGGAATC 59.041 41.667 0.00 0.00 0.00 2.52
72 73 4.284123 GCGGTGTGCAATCAGAGA 57.716 55.556 0.00 0.00 45.45 3.10
73 74 2.084844 GCGGTGTGCAATCAGAGAG 58.915 57.895 0.00 0.00 45.45 3.20
74 75 0.390340 GCGGTGTGCAATCAGAGAGA 60.390 55.000 0.00 0.00 45.45 3.10
75 76 1.941209 GCGGTGTGCAATCAGAGAGAA 60.941 52.381 0.00 0.00 45.45 2.87
76 77 2.625737 CGGTGTGCAATCAGAGAGAAT 58.374 47.619 0.00 0.00 0.00 2.40
77 78 2.606725 CGGTGTGCAATCAGAGAGAATC 59.393 50.000 0.00 0.00 0.00 2.52
78 79 2.606725 GGTGTGCAATCAGAGAGAATCG 59.393 50.000 0.00 0.00 42.67 3.34
79 80 3.257393 GTGTGCAATCAGAGAGAATCGT 58.743 45.455 0.00 0.00 42.67 3.73
80 81 3.681897 GTGTGCAATCAGAGAGAATCGTT 59.318 43.478 0.00 0.00 42.67 3.85
81 82 3.928992 TGTGCAATCAGAGAGAATCGTTC 59.071 43.478 0.00 0.00 42.67 3.95
82 83 3.000277 GTGCAATCAGAGAGAATCGTTCG 60.000 47.826 0.00 0.00 42.67 3.95
83 84 2.537625 GCAATCAGAGAGAATCGTTCGG 59.462 50.000 0.00 0.00 42.67 4.30
84 85 3.775202 CAATCAGAGAGAATCGTTCGGT 58.225 45.455 0.00 0.00 42.67 4.69
85 86 4.733815 GCAATCAGAGAGAATCGTTCGGTA 60.734 45.833 0.00 0.00 42.67 4.02
86 87 4.555348 ATCAGAGAGAATCGTTCGGTAC 57.445 45.455 0.00 0.00 42.67 3.34
87 88 3.607741 TCAGAGAGAATCGTTCGGTACT 58.392 45.455 0.00 0.00 42.67 2.73
93 94 4.157289 AGAGAATCGTTCGGTACTTTAGCA 59.843 41.667 0.00 0.00 42.67 3.49
151 153 8.668653 ACCCATGAAATTACATGTCTCCATATA 58.331 33.333 0.00 0.00 44.00 0.86
152 154 9.690913 CCCATGAAATTACATGTCTCCATATAT 57.309 33.333 0.00 0.00 44.00 0.86
185 187 1.134098 CAACCTTGGATATCACCGGCT 60.134 52.381 0.00 0.00 0.00 5.52
187 199 2.404559 ACCTTGGATATCACCGGCTAA 58.595 47.619 0.00 0.00 0.00 3.09
200 212 4.693566 TCACCGGCTAATAAAGTGAAGTTG 59.306 41.667 0.00 0.00 34.68 3.16
299 311 0.031178 CTGGTTCACAGCAGGCAAAC 59.969 55.000 0.00 0.00 43.72 2.93
300 312 0.395586 TGGTTCACAGCAGGCAAACT 60.396 50.000 0.00 0.00 0.00 2.66
301 313 1.133945 TGGTTCACAGCAGGCAAACTA 60.134 47.619 0.00 0.00 0.00 2.24
342 354 4.610605 TTTAACCTTGTGACCATCGAGA 57.389 40.909 0.00 0.00 0.00 4.04
345 357 1.902508 ACCTTGTGACCATCGAGATGT 59.097 47.619 11.59 1.05 37.11 3.06
378 391 8.919777 AAATAAATTATACTCCCTCCTTTCCG 57.080 34.615 0.00 0.00 0.00 4.30
379 392 7.867160 ATAAATTATACTCCCTCCTTTCCGA 57.133 36.000 0.00 0.00 0.00 4.55
380 393 6.765355 AAATTATACTCCCTCCTTTCCGAT 57.235 37.500 0.00 0.00 0.00 4.18
381 394 6.765355 AATTATACTCCCTCCTTTCCGATT 57.235 37.500 0.00 0.00 0.00 3.34
382 395 6.765355 ATTATACTCCCTCCTTTCCGATTT 57.235 37.500 0.00 0.00 0.00 2.17
383 396 7.867160 ATTATACTCCCTCCTTTCCGATTTA 57.133 36.000 0.00 0.00 0.00 1.40
384 397 7.867160 TTATACTCCCTCCTTTCCGATTTAT 57.133 36.000 0.00 0.00 0.00 1.40
385 398 8.961293 TTATACTCCCTCCTTTCCGATTTATA 57.039 34.615 0.00 0.00 0.00 0.98
386 399 7.867160 ATACTCCCTCCTTTCCGATTTATAA 57.133 36.000 0.00 0.00 0.00 0.98
387 400 6.176014 ACTCCCTCCTTTCCGATTTATAAG 57.824 41.667 0.00 0.00 0.00 1.73
388 401 5.903589 ACTCCCTCCTTTCCGATTTATAAGA 59.096 40.000 0.00 0.00 0.00 2.10
389 402 6.170846 TCCCTCCTTTCCGATTTATAAGAC 57.829 41.667 0.00 0.00 0.00 3.01
390 403 5.903589 TCCCTCCTTTCCGATTTATAAGACT 59.096 40.000 0.00 0.00 0.00 3.24
391 404 6.041751 TCCCTCCTTTCCGATTTATAAGACTC 59.958 42.308 0.00 0.00 0.00 3.36
392 405 6.183360 CCCTCCTTTCCGATTTATAAGACTCA 60.183 42.308 0.00 0.00 0.00 3.41
393 406 7.272978 CCTCCTTTCCGATTTATAAGACTCAA 58.727 38.462 0.00 0.00 0.00 3.02
394 407 7.934120 CCTCCTTTCCGATTTATAAGACTCAAT 59.066 37.037 0.00 0.00 0.00 2.57
395 408 9.331282 CTCCTTTCCGATTTATAAGACTCAATT 57.669 33.333 0.00 0.00 0.00 2.32
396 409 9.326413 TCCTTTCCGATTTATAAGACTCAATTC 57.674 33.333 0.00 0.00 0.00 2.17
397 410 9.109393 CCTTTCCGATTTATAAGACTCAATTCA 57.891 33.333 0.00 0.00 0.00 2.57
409 422 7.587037 AAGACTCAATTCAAAAATCTCACCA 57.413 32.000 0.00 0.00 0.00 4.17
410 423 7.587037 AGACTCAATTCAAAAATCTCACCAA 57.413 32.000 0.00 0.00 0.00 3.67
411 424 7.428826 AGACTCAATTCAAAAATCTCACCAAC 58.571 34.615 0.00 0.00 0.00 3.77
412 425 6.515832 ACTCAATTCAAAAATCTCACCAACC 58.484 36.000 0.00 0.00 0.00 3.77
413 426 6.098124 ACTCAATTCAAAAATCTCACCAACCA 59.902 34.615 0.00 0.00 0.00 3.67
414 427 6.882656 TCAATTCAAAAATCTCACCAACCAA 58.117 32.000 0.00 0.00 0.00 3.67
415 428 6.985645 TCAATTCAAAAATCTCACCAACCAAG 59.014 34.615 0.00 0.00 0.00 3.61
416 429 6.729690 ATTCAAAAATCTCACCAACCAAGA 57.270 33.333 0.00 0.00 0.00 3.02
417 430 6.729690 TTCAAAAATCTCACCAACCAAGAT 57.270 33.333 0.00 0.00 0.00 2.40
418 431 7.831691 TTCAAAAATCTCACCAACCAAGATA 57.168 32.000 0.00 0.00 0.00 1.98
419 432 7.452880 TCAAAAATCTCACCAACCAAGATAG 57.547 36.000 0.00 0.00 0.00 2.08
420 433 7.230747 TCAAAAATCTCACCAACCAAGATAGA 58.769 34.615 0.00 0.00 0.00 1.98
421 434 7.890127 TCAAAAATCTCACCAACCAAGATAGAT 59.110 33.333 0.00 0.00 0.00 1.98
422 435 7.636150 AAAATCTCACCAACCAAGATAGATG 57.364 36.000 0.00 0.00 0.00 2.90
423 436 6.566079 AATCTCACCAACCAAGATAGATGA 57.434 37.500 0.00 0.00 0.00 2.92
424 437 6.760440 ATCTCACCAACCAAGATAGATGAT 57.240 37.500 0.00 0.00 0.00 2.45
425 438 5.922053 TCTCACCAACCAAGATAGATGATG 58.078 41.667 0.00 0.00 0.00 3.07
426 439 5.662657 TCTCACCAACCAAGATAGATGATGA 59.337 40.000 0.00 0.00 0.00 2.92
427 440 5.922053 TCACCAACCAAGATAGATGATGAG 58.078 41.667 0.00 0.00 0.00 2.90
428 441 5.426509 TCACCAACCAAGATAGATGATGAGT 59.573 40.000 0.00 0.00 0.00 3.41
429 442 5.526479 CACCAACCAAGATAGATGATGAGTG 59.474 44.000 0.00 0.00 0.00 3.51
430 443 5.061853 CCAACCAAGATAGATGATGAGTGG 58.938 45.833 0.00 0.00 0.00 4.00
431 444 5.397221 CCAACCAAGATAGATGATGAGTGGT 60.397 44.000 0.00 0.00 39.79 4.16
432 445 5.287674 ACCAAGATAGATGATGAGTGGTG 57.712 43.478 0.00 0.00 36.77 4.17
433 446 4.102210 ACCAAGATAGATGATGAGTGGTGG 59.898 45.833 0.00 0.00 36.77 4.61
434 447 4.346127 CCAAGATAGATGATGAGTGGTGGA 59.654 45.833 0.00 0.00 0.00 4.02
435 448 5.163269 CCAAGATAGATGATGAGTGGTGGAA 60.163 44.000 0.00 0.00 0.00 3.53
436 449 6.465464 CCAAGATAGATGATGAGTGGTGGAAT 60.465 42.308 0.00 0.00 0.00 3.01
437 450 7.256439 CCAAGATAGATGATGAGTGGTGGAATA 60.256 40.741 0.00 0.00 0.00 1.75
438 451 7.238486 AGATAGATGATGAGTGGTGGAATAC 57.762 40.000 0.00 0.00 0.00 1.89
439 452 7.015680 AGATAGATGATGAGTGGTGGAATACT 58.984 38.462 0.00 0.00 0.00 2.12
440 453 5.965033 AGATGATGAGTGGTGGAATACTT 57.035 39.130 0.00 0.00 0.00 2.24
441 454 6.319048 AGATGATGAGTGGTGGAATACTTT 57.681 37.500 0.00 0.00 0.00 2.66
442 455 6.725364 AGATGATGAGTGGTGGAATACTTTT 58.275 36.000 0.00 0.00 0.00 2.27
443 456 7.861629 AGATGATGAGTGGTGGAATACTTTTA 58.138 34.615 0.00 0.00 0.00 1.52
444 457 8.497745 AGATGATGAGTGGTGGAATACTTTTAT 58.502 33.333 0.00 0.00 0.00 1.40
445 458 9.778741 GATGATGAGTGGTGGAATACTTTTATA 57.221 33.333 0.00 0.00 0.00 0.98
446 459 9.784531 ATGATGAGTGGTGGAATACTTTTATAG 57.215 33.333 0.00 0.00 0.00 1.31
447 460 8.768397 TGATGAGTGGTGGAATACTTTTATAGT 58.232 33.333 0.00 0.00 41.04 2.12
448 461 9.614792 GATGAGTGGTGGAATACTTTTATAGTT 57.385 33.333 0.00 0.00 38.33 2.24
449 462 9.975218 ATGAGTGGTGGAATACTTTTATAGTTT 57.025 29.630 0.00 0.00 38.33 2.66
450 463 9.226606 TGAGTGGTGGAATACTTTTATAGTTTG 57.773 33.333 0.00 0.00 38.33 2.93
451 464 8.051901 AGTGGTGGAATACTTTTATAGTTTGC 57.948 34.615 0.00 0.00 38.33 3.68
452 465 7.668052 AGTGGTGGAATACTTTTATAGTTTGCA 59.332 33.333 0.00 0.00 38.33 4.08
453 466 8.301002 GTGGTGGAATACTTTTATAGTTTGCAA 58.699 33.333 0.00 0.00 38.33 4.08
454 467 8.861086 TGGTGGAATACTTTTATAGTTTGCAAA 58.139 29.630 8.05 8.05 38.33 3.68
455 468 9.699703 GGTGGAATACTTTTATAGTTTGCAAAA 57.300 29.630 14.67 0.00 38.33 2.44
457 470 9.699703 TGGAATACTTTTATAGTTTGCAAAACC 57.300 29.630 14.67 2.18 38.33 3.27
458 471 9.146984 GGAATACTTTTATAGTTTGCAAAACCC 57.853 33.333 14.67 1.37 38.33 4.11
459 472 9.699703 GAATACTTTTATAGTTTGCAAAACCCA 57.300 29.630 14.67 0.00 38.33 4.51
462 475 8.972458 ACTTTTATAGTTTGCAAAACCCAATT 57.028 26.923 14.67 0.00 31.29 2.32
467 480 5.687770 AGTTTGCAAAACCCAATTAATGC 57.312 34.783 14.67 0.00 35.06 3.56
468 481 5.375773 AGTTTGCAAAACCCAATTAATGCT 58.624 33.333 14.67 0.00 35.37 3.79
469 482 5.827267 AGTTTGCAAAACCCAATTAATGCTT 59.173 32.000 14.67 0.00 35.37 3.91
470 483 6.320926 AGTTTGCAAAACCCAATTAATGCTTT 59.679 30.769 14.67 0.00 35.37 3.51
471 484 6.705863 TTGCAAAACCCAATTAATGCTTTT 57.294 29.167 0.00 0.00 35.37 2.27
472 485 6.069684 TGCAAAACCCAATTAATGCTTTTG 57.930 33.333 11.88 11.88 37.76 2.44
473 486 5.591877 TGCAAAACCCAATTAATGCTTTTGT 59.408 32.000 14.94 0.00 37.41 2.83
474 487 6.096001 TGCAAAACCCAATTAATGCTTTTGTT 59.904 30.769 14.94 3.06 37.41 2.83
475 488 6.977502 GCAAAACCCAATTAATGCTTTTGTTT 59.022 30.769 14.94 7.14 37.41 2.83
476 489 7.490725 GCAAAACCCAATTAATGCTTTTGTTTT 59.509 29.630 14.94 10.76 37.41 2.43
477 490 9.018716 CAAAACCCAATTAATGCTTTTGTTTTC 57.981 29.630 0.00 0.00 34.07 2.29
478 491 6.875948 ACCCAATTAATGCTTTTGTTTTCC 57.124 33.333 0.00 0.00 0.00 3.13
479 492 6.600388 ACCCAATTAATGCTTTTGTTTTCCT 58.400 32.000 0.00 0.00 0.00 3.36
480 493 6.710295 ACCCAATTAATGCTTTTGTTTTCCTC 59.290 34.615 0.00 0.00 0.00 3.71
481 494 6.709846 CCCAATTAATGCTTTTGTTTTCCTCA 59.290 34.615 0.00 0.00 0.00 3.86
482 495 7.228308 CCCAATTAATGCTTTTGTTTTCCTCAA 59.772 33.333 0.00 0.00 0.00 3.02
483 496 8.619546 CCAATTAATGCTTTTGTTTTCCTCAAA 58.380 29.630 0.00 0.00 33.76 2.69
536 549 9.198837 ACAATGCATGCATACATAAATTACATG 57.801 29.630 32.36 22.49 35.31 3.21
544 557 9.628746 TGCATACATAAATTACATGCATTGATC 57.371 29.630 12.06 0.00 45.09 2.92
545 558 9.628746 GCATACATAAATTACATGCATTGATCA 57.371 29.630 0.00 0.00 41.25 2.92
595 608 9.932207 AATGATTTAATGCAACTTGAAATCTGA 57.068 25.926 16.39 0.00 37.39 3.27
596 609 9.932207 ATGATTTAATGCAACTTGAAATCTGAA 57.068 25.926 16.39 4.66 37.39 3.02
597 610 9.195411 TGATTTAATGCAACTTGAAATCTGAAC 57.805 29.630 16.39 0.00 37.39 3.18
598 611 9.195411 GATTTAATGCAACTTGAAATCTGAACA 57.805 29.630 0.00 0.00 34.91 3.18
599 612 9.715121 ATTTAATGCAACTTGAAATCTGAACAT 57.285 25.926 0.00 0.00 0.00 2.71
600 613 8.523523 TTAATGCAACTTGAAATCTGAACATG 57.476 30.769 0.00 0.00 0.00 3.21
601 614 5.518848 TGCAACTTGAAATCTGAACATGT 57.481 34.783 0.00 0.00 0.00 3.21
602 615 5.283294 TGCAACTTGAAATCTGAACATGTG 58.717 37.500 0.00 0.00 0.00 3.21
603 616 5.067544 TGCAACTTGAAATCTGAACATGTGA 59.932 36.000 0.00 0.00 0.00 3.58
604 617 6.154445 GCAACTTGAAATCTGAACATGTGAT 58.846 36.000 0.00 0.00 0.00 3.06
605 618 6.089016 GCAACTTGAAATCTGAACATGTGATG 59.911 38.462 0.00 0.00 0.00 3.07
606 619 6.263516 ACTTGAAATCTGAACATGTGATGG 57.736 37.500 0.00 0.00 33.60 3.51
607 620 6.005823 ACTTGAAATCTGAACATGTGATGGA 58.994 36.000 0.00 0.00 33.60 3.41
608 621 6.491062 ACTTGAAATCTGAACATGTGATGGAA 59.509 34.615 0.00 0.00 33.60 3.53
609 622 6.897706 TGAAATCTGAACATGTGATGGAAA 57.102 33.333 0.00 0.00 33.60 3.13
610 623 7.287512 TGAAATCTGAACATGTGATGGAAAA 57.712 32.000 0.00 0.00 33.60 2.29
611 624 7.147312 TGAAATCTGAACATGTGATGGAAAAC 58.853 34.615 0.00 0.00 33.60 2.43
612 625 6.653526 AATCTGAACATGTGATGGAAAACA 57.346 33.333 0.00 0.00 33.60 2.83
613 626 6.653526 ATCTGAACATGTGATGGAAAACAA 57.346 33.333 0.00 0.00 33.60 2.83
614 627 5.830912 TCTGAACATGTGATGGAAAACAAC 58.169 37.500 0.00 0.00 33.60 3.32
615 628 4.942852 TGAACATGTGATGGAAAACAACC 58.057 39.130 0.00 0.00 33.60 3.77
616 629 4.403752 TGAACATGTGATGGAAAACAACCA 59.596 37.500 0.00 0.00 41.83 3.67
617 630 5.105187 TGAACATGTGATGGAAAACAACCAA 60.105 36.000 0.00 0.00 40.93 3.67
618 631 5.350504 ACATGTGATGGAAAACAACCAAA 57.649 34.783 0.00 0.00 40.93 3.28
619 632 5.927819 ACATGTGATGGAAAACAACCAAAT 58.072 33.333 0.00 0.00 40.93 2.32
620 633 6.355747 ACATGTGATGGAAAACAACCAAATT 58.644 32.000 0.00 0.00 40.93 1.82
621 634 6.260493 ACATGTGATGGAAAACAACCAAATTG 59.740 34.615 0.00 0.00 40.93 2.32
622 635 5.982356 TGTGATGGAAAACAACCAAATTGA 58.018 33.333 0.00 0.00 41.23 2.57
623 636 6.409704 TGTGATGGAAAACAACCAAATTGAA 58.590 32.000 0.00 0.00 41.23 2.69
624 637 6.314896 TGTGATGGAAAACAACCAAATTGAAC 59.685 34.615 0.00 0.00 41.23 3.18
625 638 6.538381 GTGATGGAAAACAACCAAATTGAACT 59.462 34.615 0.00 0.00 41.23 3.01
626 639 7.065683 GTGATGGAAAACAACCAAATTGAACTT 59.934 33.333 0.00 0.00 41.23 2.66
627 640 7.609532 TGATGGAAAACAACCAAATTGAACTTT 59.390 29.630 0.00 0.00 41.23 2.66
628 641 9.103861 GATGGAAAACAACCAAATTGAACTTTA 57.896 29.630 0.00 0.00 41.23 1.85
629 642 9.625747 ATGGAAAACAACCAAATTGAACTTTAT 57.374 25.926 0.00 0.00 41.23 1.40
673 686 9.689501 ATTTTGAGATAAACCTTATAAACCGGA 57.310 29.630 9.46 0.00 0.00 5.14
674 687 9.517868 TTTTGAGATAAACCTTATAAACCGGAA 57.482 29.630 9.46 0.00 0.00 4.30
675 688 9.517868 TTTGAGATAAACCTTATAAACCGGAAA 57.482 29.630 9.46 0.00 0.00 3.13
676 689 8.726870 TGAGATAAACCTTATAAACCGGAAAG 57.273 34.615 9.46 3.38 0.00 2.62
678 691 7.864770 AGATAAACCTTATAAACCGGAAAGGA 58.135 34.615 22.02 8.15 45.00 3.36
679 692 7.991460 AGATAAACCTTATAAACCGGAAAGGAG 59.009 37.037 22.02 8.98 45.00 3.69
680 693 4.498894 ACCTTATAAACCGGAAAGGAGG 57.501 45.455 22.02 16.97 45.00 4.30
681 694 3.201487 ACCTTATAAACCGGAAAGGAGGG 59.799 47.826 22.02 13.60 45.00 4.30
682 695 3.457012 CCTTATAAACCGGAAAGGAGGGA 59.543 47.826 9.46 0.00 45.00 4.20
683 696 4.444449 CCTTATAAACCGGAAAGGAGGGAG 60.444 50.000 9.46 0.00 45.00 4.30
684 697 2.034436 TAAACCGGAAAGGAGGGAGT 57.966 50.000 9.46 0.00 45.00 3.85
685 698 2.034436 AAACCGGAAAGGAGGGAGTA 57.966 50.000 9.46 0.00 45.00 2.59
836 861 2.572284 GGACGTCCACGAGAAGGG 59.428 66.667 29.75 0.00 43.02 3.95
860 885 1.502527 AAACGGAGGTGGGCCCAATA 61.503 55.000 30.64 0.00 34.66 1.90
990 1016 4.020617 TGACGCTTCTGCCCCTGG 62.021 66.667 0.00 0.00 35.36 4.45
1052 1099 2.491022 CCTTCCTCGCCTACCTCGG 61.491 68.421 0.00 0.00 0.00 4.63
1118 1177 4.154347 GGAGGAGGGCGTGCTGAG 62.154 72.222 5.79 0.00 0.00 3.35
1119 1178 4.828925 GAGGAGGGCGTGCTGAGC 62.829 72.222 5.79 0.00 0.00 4.26
1162 1221 2.680312 TCTTCTTCTTCCCATGCTCG 57.320 50.000 0.00 0.00 0.00 5.03
1266 1391 4.867599 GGCACGTCGTCGGGATCC 62.868 72.222 8.88 1.92 43.98 3.36
1452 1577 4.821589 GCCGAGAAGCTCCGGGTG 62.822 72.222 19.35 0.00 45.42 4.61
1634 1759 2.490148 CCTCGCTGATCCGGTAGCA 61.490 63.158 21.53 9.50 39.87 3.49
1635 1760 1.437573 CTCGCTGATCCGGTAGCAA 59.562 57.895 21.53 8.25 39.87 3.91
1636 1761 0.179111 CTCGCTGATCCGGTAGCAAA 60.179 55.000 21.53 11.83 39.87 3.68
1637 1762 0.179111 TCGCTGATCCGGTAGCAAAG 60.179 55.000 21.53 10.31 39.87 2.77
1638 1763 1.766143 CGCTGATCCGGTAGCAAAGC 61.766 60.000 21.53 13.60 39.87 3.51
1767 1895 8.682936 ATTAATCACAACCCATAAGAAGCTAG 57.317 34.615 0.00 0.00 0.00 3.42
1768 1896 3.873910 TCACAACCCATAAGAAGCTAGC 58.126 45.455 6.62 6.62 0.00 3.42
1769 1897 3.263170 TCACAACCCATAAGAAGCTAGCA 59.737 43.478 18.83 0.00 0.00 3.49
1770 1898 3.375299 CACAACCCATAAGAAGCTAGCAC 59.625 47.826 18.83 10.61 0.00 4.40
1771 1899 3.264450 ACAACCCATAAGAAGCTAGCACT 59.736 43.478 18.83 12.86 0.00 4.40
1772 1900 4.469945 ACAACCCATAAGAAGCTAGCACTA 59.530 41.667 18.83 2.55 0.00 2.74
1773 1901 5.131142 ACAACCCATAAGAAGCTAGCACTAT 59.869 40.000 18.83 4.89 0.00 2.12
1774 1902 5.220710 ACCCATAAGAAGCTAGCACTATG 57.779 43.478 18.83 15.70 0.00 2.23
1775 1903 3.999663 CCCATAAGAAGCTAGCACTATGC 59.000 47.826 18.83 0.00 45.46 3.14
1792 1920 5.048013 CACTATGCATGCATGATCCTTGATT 60.048 40.000 37.43 14.58 37.82 2.57
1861 1992 2.015736 ACCTACTTGCTGCTTGATCG 57.984 50.000 0.00 0.00 0.00 3.69
1871 2002 1.009900 GCTTGATCGATGCTGCTGC 60.010 57.895 0.54 8.89 40.20 5.25
1872 2003 1.437772 GCTTGATCGATGCTGCTGCT 61.438 55.000 17.00 2.26 40.48 4.24
1873 2004 0.305009 CTTGATCGATGCTGCTGCTG 59.695 55.000 17.00 0.77 40.48 4.41
1942 2073 2.279120 GATCGGTCCAGCGAGCAG 60.279 66.667 11.25 0.00 36.22 4.24
2023 2154 1.396301 CTAGTGCTGCAGCTTTGCTAC 59.604 52.381 36.61 25.35 42.66 3.58
2024 2155 0.535780 AGTGCTGCAGCTTTGCTACA 60.536 50.000 36.61 13.65 42.66 2.74
2025 2156 0.524862 GTGCTGCAGCTTTGCTACAT 59.475 50.000 36.61 0.00 42.66 2.29
2118 2251 1.381928 CCTGTCACCCTCATGCATGC 61.382 60.000 22.25 11.82 0.00 4.06
2129 2262 3.752222 CCTCATGCATGCCTCTCTAAATC 59.248 47.826 22.25 0.00 0.00 2.17
2132 2265 6.370186 TCATGCATGCCTCTCTAAATCTAT 57.630 37.500 22.25 0.00 0.00 1.98
2133 2266 7.364497 CCTCATGCATGCCTCTCTAAATCTATA 60.364 40.741 22.25 0.00 0.00 1.31
2135 2268 9.205513 TCATGCATGCCTCTCTAAATCTATATA 57.794 33.333 22.25 0.00 0.00 0.86
2136 2269 9.828039 CATGCATGCCTCTCTAAATCTATATAA 57.172 33.333 14.93 0.00 0.00 0.98
2164 2297 2.281208 CCGGCCGAAAGTTGGTGA 60.281 61.111 30.73 0.00 0.00 4.02
2166 2299 1.574428 CGGCCGAAAGTTGGTGAAG 59.426 57.895 24.07 0.00 0.00 3.02
2196 2329 4.036027 CACATATGCTTGTCCTCATTGTCC 59.964 45.833 1.58 0.00 0.00 4.02
2224 2357 1.595058 TTCTCTCCCCTCCCTCCCTC 61.595 65.000 0.00 0.00 0.00 4.30
2225 2358 3.036959 TCTCCCCTCCCTCCCTCC 61.037 72.222 0.00 0.00 0.00 4.30
2226 2359 4.179599 CTCCCCTCCCTCCCTCCC 62.180 77.778 0.00 0.00 0.00 4.30
2228 2365 3.711782 CCCCTCCCTCCCTCCCTT 61.712 72.222 0.00 0.00 0.00 3.95
2233 2370 0.547712 CTCCCTCCCTCCCTTTGTGA 60.548 60.000 0.00 0.00 0.00 3.58
2234 2371 0.840722 TCCCTCCCTCCCTTTGTGAC 60.841 60.000 0.00 0.00 0.00 3.67
2235 2372 1.133809 CCCTCCCTCCCTTTGTGACA 61.134 60.000 0.00 0.00 0.00 3.58
2236 2373 0.036875 CCTCCCTCCCTTTGTGACAC 59.963 60.000 0.00 0.00 0.00 3.67
2237 2374 1.059913 CTCCCTCCCTTTGTGACACT 58.940 55.000 7.20 0.00 0.00 3.55
2238 2375 1.002544 CTCCCTCCCTTTGTGACACTC 59.997 57.143 7.20 0.00 0.00 3.51
2239 2376 1.059913 CCCTCCCTTTGTGACACTCT 58.940 55.000 7.20 0.00 0.00 3.24
2240 2377 1.002544 CCCTCCCTTTGTGACACTCTC 59.997 57.143 7.20 0.00 0.00 3.20
2241 2378 1.974236 CCTCCCTTTGTGACACTCTCT 59.026 52.381 7.20 0.00 0.00 3.10
2242 2379 2.028567 CCTCCCTTTGTGACACTCTCTC 60.029 54.545 7.20 0.00 0.00 3.20
2243 2380 2.896685 CTCCCTTTGTGACACTCTCTCT 59.103 50.000 7.20 0.00 0.00 3.10
2244 2381 2.894126 TCCCTTTGTGACACTCTCTCTC 59.106 50.000 7.20 0.00 0.00 3.20
2245 2382 2.630098 CCCTTTGTGACACTCTCTCTCA 59.370 50.000 7.20 0.00 0.00 3.27
2246 2383 3.260380 CCCTTTGTGACACTCTCTCTCAT 59.740 47.826 7.20 0.00 0.00 2.90
2247 2384 4.464244 CCCTTTGTGACACTCTCTCTCATA 59.536 45.833 7.20 0.00 0.00 2.15
2249 2386 5.417266 CCTTTGTGACACTCTCTCTCATAGA 59.583 44.000 7.20 0.00 0.00 1.98
2268 2405 7.766283 TCATAGAGAGAGAAAGTGTGTGTATG 58.234 38.462 0.00 0.00 0.00 2.39
2273 2410 7.394641 AGAGAGAGAAAGTGTGTGTATGTATGA 59.605 37.037 0.00 0.00 0.00 2.15
2275 2412 8.367911 AGAGAGAAAGTGTGTGTATGTATGAAA 58.632 33.333 0.00 0.00 0.00 2.69
2283 2427 5.936956 TGTGTGTATGTATGAAAGTGATGCA 59.063 36.000 0.00 0.00 0.00 3.96
2318 2462 6.583912 TTTTGTTGAGTATCGATCGATTCC 57.416 37.500 33.46 23.52 38.61 3.01
2319 2463 4.238761 TGTTGAGTATCGATCGATTCCC 57.761 45.455 33.46 20.79 38.61 3.97
2338 2482 5.633473 TCCCTTCTCCTATGGGTACATAT 57.367 43.478 0.00 0.00 42.23 1.78
2367 2511 2.029728 GCGGCTGCTTTATATATGCTCG 59.970 50.000 11.21 10.08 38.39 5.03
2383 2529 9.794685 ATATATGCTCGTCTATGTCTGTTTATG 57.205 33.333 0.00 0.00 0.00 1.90
2384 2530 4.682787 TGCTCGTCTATGTCTGTTTATGG 58.317 43.478 0.00 0.00 0.00 2.74
2406 2552 3.936203 GGTGGTGGTGGCGAGTCA 61.936 66.667 0.00 0.00 0.00 3.41
2498 2645 3.907194 GTCTCTAGTGTCTTTGACGAACG 59.093 47.826 0.00 0.00 34.95 3.95
2514 2661 0.663153 AACGACTGCCTCTTTTGTGC 59.337 50.000 0.00 0.00 0.00 4.57
2561 2712 2.234613 CGCTTTCGCCACTCTTTCA 58.765 52.632 0.00 0.00 0.00 2.69
2562 2713 0.110644 CGCTTTCGCCACTCTTTCAC 60.111 55.000 0.00 0.00 0.00 3.18
2564 2715 1.497991 CTTTCGCCACTCTTTCACGA 58.502 50.000 0.00 0.00 0.00 4.35
2620 2771 6.900194 ACAGTAATTACACCAGCCATAAGAT 58.100 36.000 17.65 0.00 0.00 2.40
2621 2772 8.029782 ACAGTAATTACACCAGCCATAAGATA 57.970 34.615 17.65 0.00 0.00 1.98
2622 2773 8.150945 ACAGTAATTACACCAGCCATAAGATAG 58.849 37.037 17.65 0.00 0.00 2.08
2623 2774 8.367911 CAGTAATTACACCAGCCATAAGATAGA 58.632 37.037 17.65 0.00 0.00 1.98
2624 2775 8.934697 AGTAATTACACCAGCCATAAGATAGAA 58.065 33.333 17.65 0.00 0.00 2.10
2625 2776 9.555727 GTAATTACACCAGCCATAAGATAGAAA 57.444 33.333 10.81 0.00 0.00 2.52
2627 2778 9.474313 AATTACACCAGCCATAAGATAGAAAAA 57.526 29.630 0.00 0.00 0.00 1.94
2628 2779 6.759497 ACACCAGCCATAAGATAGAAAAAC 57.241 37.500 0.00 0.00 0.00 2.43
2629 2780 5.652452 ACACCAGCCATAAGATAGAAAAACC 59.348 40.000 0.00 0.00 0.00 3.27
2630 2781 5.888161 CACCAGCCATAAGATAGAAAAACCT 59.112 40.000 0.00 0.00 0.00 3.50
2631 2782 6.378280 CACCAGCCATAAGATAGAAAAACCTT 59.622 38.462 0.00 0.00 0.00 3.50
2632 2783 6.954102 ACCAGCCATAAGATAGAAAAACCTTT 59.046 34.615 0.00 0.00 0.00 3.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.348036 GCTAGTCACAACCACCTTCCT 59.652 52.381 0.00 0.00 0.00 3.36
1 2 1.809684 GCTAGTCACAACCACCTTCC 58.190 55.000 0.00 0.00 0.00 3.46
2 3 1.000506 TCGCTAGTCACAACCACCTTC 59.999 52.381 0.00 0.00 0.00 3.46
3 4 1.045407 TCGCTAGTCACAACCACCTT 58.955 50.000 0.00 0.00 0.00 3.50
4 5 1.045407 TTCGCTAGTCACAACCACCT 58.955 50.000 0.00 0.00 0.00 4.00
5 6 1.145803 GTTCGCTAGTCACAACCACC 58.854 55.000 0.00 0.00 0.00 4.61
6 7 1.792949 CTGTTCGCTAGTCACAACCAC 59.207 52.381 0.00 0.00 0.00 4.16
7 8 1.684450 TCTGTTCGCTAGTCACAACCA 59.316 47.619 0.00 0.00 0.00 3.67
8 9 2.433868 TCTGTTCGCTAGTCACAACC 57.566 50.000 0.00 0.00 0.00 3.77
9 10 2.668457 CCATCTGTTCGCTAGTCACAAC 59.332 50.000 0.00 0.00 0.00 3.32
10 11 2.560981 TCCATCTGTTCGCTAGTCACAA 59.439 45.455 0.00 0.00 0.00 3.33
11 12 2.167662 TCCATCTGTTCGCTAGTCACA 58.832 47.619 0.00 0.00 0.00 3.58
12 13 2.941453 TCCATCTGTTCGCTAGTCAC 57.059 50.000 0.00 0.00 0.00 3.67
13 14 3.953712 TTTCCATCTGTTCGCTAGTCA 57.046 42.857 0.00 0.00 0.00 3.41
14 15 3.994392 TGTTTTCCATCTGTTCGCTAGTC 59.006 43.478 0.00 0.00 0.00 2.59
15 16 4.002906 TGTTTTCCATCTGTTCGCTAGT 57.997 40.909 0.00 0.00 0.00 2.57
16 17 5.327091 CATTGTTTTCCATCTGTTCGCTAG 58.673 41.667 0.00 0.00 0.00 3.42
17 18 4.155826 CCATTGTTTTCCATCTGTTCGCTA 59.844 41.667 0.00 0.00 0.00 4.26
18 19 3.057315 CCATTGTTTTCCATCTGTTCGCT 60.057 43.478 0.00 0.00 0.00 4.93
19 20 3.057596 TCCATTGTTTTCCATCTGTTCGC 60.058 43.478 0.00 0.00 0.00 4.70
20 21 4.379813 CCTCCATTGTTTTCCATCTGTTCG 60.380 45.833 0.00 0.00 0.00 3.95
21 22 4.082026 CCCTCCATTGTTTTCCATCTGTTC 60.082 45.833 0.00 0.00 0.00 3.18
22 23 3.834231 CCCTCCATTGTTTTCCATCTGTT 59.166 43.478 0.00 0.00 0.00 3.16
23 24 3.075882 TCCCTCCATTGTTTTCCATCTGT 59.924 43.478 0.00 0.00 0.00 3.41
24 25 3.700538 TCCCTCCATTGTTTTCCATCTG 58.299 45.455 0.00 0.00 0.00 2.90
25 26 4.402616 TTCCCTCCATTGTTTTCCATCT 57.597 40.909 0.00 0.00 0.00 2.90
26 27 4.100035 GGATTCCCTCCATTGTTTTCCATC 59.900 45.833 0.00 0.00 44.26 3.51
27 28 4.033009 GGATTCCCTCCATTGTTTTCCAT 58.967 43.478 0.00 0.00 44.26 3.41
28 29 3.440127 GGATTCCCTCCATTGTTTTCCA 58.560 45.455 0.00 0.00 44.26 3.53
29 30 2.766263 GGGATTCCCTCCATTGTTTTCC 59.234 50.000 14.98 0.00 46.98 3.13
30 31 2.427095 CGGGATTCCCTCCATTGTTTTC 59.573 50.000 19.63 0.00 46.98 2.29
31 32 2.456577 CGGGATTCCCTCCATTGTTTT 58.543 47.619 19.63 0.00 46.98 2.43
32 33 1.959989 GCGGGATTCCCTCCATTGTTT 60.960 52.381 19.63 0.00 46.98 2.83
33 34 0.395724 GCGGGATTCCCTCCATTGTT 60.396 55.000 19.63 0.00 46.98 2.83
34 35 1.227383 GCGGGATTCCCTCCATTGT 59.773 57.895 19.63 0.00 46.98 2.71
35 36 0.764890 TAGCGGGATTCCCTCCATTG 59.235 55.000 19.63 4.03 46.98 2.82
36 37 1.059913 CTAGCGGGATTCCCTCCATT 58.940 55.000 19.63 0.00 46.98 3.16
37 38 1.484444 GCTAGCGGGATTCCCTCCAT 61.484 60.000 19.63 5.30 46.98 3.41
38 39 2.140792 GCTAGCGGGATTCCCTCCA 61.141 63.158 19.63 0.00 46.98 3.86
39 40 2.744377 GCTAGCGGGATTCCCTCC 59.256 66.667 19.63 10.26 42.67 4.30
40 41 2.340443 CGCTAGCGGGATTCCCTC 59.660 66.667 29.29 12.02 42.67 4.30
50 51 2.028766 CTGATTGCACACCGCTAGCG 62.029 60.000 29.93 29.93 43.06 4.26
51 52 0.740868 TCTGATTGCACACCGCTAGC 60.741 55.000 4.06 4.06 43.06 3.42
52 53 1.134995 TCTCTGATTGCACACCGCTAG 60.135 52.381 0.00 0.00 43.06 3.42
53 54 0.894835 TCTCTGATTGCACACCGCTA 59.105 50.000 0.00 0.00 43.06 4.26
54 55 0.390866 CTCTCTGATTGCACACCGCT 60.391 55.000 0.00 0.00 43.06 5.52
55 56 0.390340 TCTCTCTGATTGCACACCGC 60.390 55.000 0.00 0.00 42.89 5.68
56 57 2.084610 TTCTCTCTGATTGCACACCG 57.915 50.000 0.00 0.00 0.00 4.94
57 58 2.606725 CGATTCTCTCTGATTGCACACC 59.393 50.000 0.00 0.00 0.00 4.16
58 59 3.257393 ACGATTCTCTCTGATTGCACAC 58.743 45.455 0.00 0.00 0.00 3.82
59 60 3.599730 ACGATTCTCTCTGATTGCACA 57.400 42.857 0.00 0.00 0.00 4.57
60 61 3.000277 CGAACGATTCTCTCTGATTGCAC 60.000 47.826 0.00 0.00 0.00 4.57
61 62 3.182182 CGAACGATTCTCTCTGATTGCA 58.818 45.455 0.00 0.00 0.00 4.08
62 63 2.537625 CCGAACGATTCTCTCTGATTGC 59.462 50.000 0.00 0.00 0.00 3.56
63 64 3.775202 ACCGAACGATTCTCTCTGATTG 58.225 45.455 0.00 0.00 0.00 2.67
64 65 4.641094 AGTACCGAACGATTCTCTCTGATT 59.359 41.667 0.00 0.00 0.00 2.57
65 66 4.200874 AGTACCGAACGATTCTCTCTGAT 58.799 43.478 0.00 0.00 0.00 2.90
66 67 3.607741 AGTACCGAACGATTCTCTCTGA 58.392 45.455 0.00 0.00 0.00 3.27
67 68 4.358494 AAGTACCGAACGATTCTCTCTG 57.642 45.455 0.00 0.00 0.00 3.35
68 69 5.448904 GCTAAAGTACCGAACGATTCTCTCT 60.449 44.000 0.00 0.00 0.00 3.10
69 70 4.734370 GCTAAAGTACCGAACGATTCTCTC 59.266 45.833 0.00 0.00 0.00 3.20
70 71 4.157289 TGCTAAAGTACCGAACGATTCTCT 59.843 41.667 0.00 0.00 0.00 3.10
71 72 4.418392 TGCTAAAGTACCGAACGATTCTC 58.582 43.478 0.00 0.00 0.00 2.87
72 73 4.445452 TGCTAAAGTACCGAACGATTCT 57.555 40.909 0.00 0.00 0.00 2.40
73 74 5.520022 TTTGCTAAAGTACCGAACGATTC 57.480 39.130 0.00 0.00 0.00 2.52
74 75 6.148150 TCAATTTGCTAAAGTACCGAACGATT 59.852 34.615 0.00 0.00 0.00 3.34
75 76 5.640357 TCAATTTGCTAAAGTACCGAACGAT 59.360 36.000 0.00 0.00 0.00 3.73
76 77 4.989797 TCAATTTGCTAAAGTACCGAACGA 59.010 37.500 0.00 0.00 0.00 3.85
77 78 5.272167 TCAATTTGCTAAAGTACCGAACG 57.728 39.130 0.00 0.00 0.00 3.95
78 79 6.128117 TGGATCAATTTGCTAAAGTACCGAAC 60.128 38.462 0.00 0.00 0.00 3.95
79 80 5.941058 TGGATCAATTTGCTAAAGTACCGAA 59.059 36.000 0.00 0.00 0.00 4.30
80 81 5.492895 TGGATCAATTTGCTAAAGTACCGA 58.507 37.500 0.00 0.00 0.00 4.69
81 82 5.811399 TGGATCAATTTGCTAAAGTACCG 57.189 39.130 0.00 0.00 0.00 4.02
82 83 6.461509 CCCATGGATCAATTTGCTAAAGTACC 60.462 42.308 15.22 0.00 0.00 3.34
83 84 6.461509 CCCCATGGATCAATTTGCTAAAGTAC 60.462 42.308 15.22 0.00 0.00 2.73
84 85 5.598005 CCCCATGGATCAATTTGCTAAAGTA 59.402 40.000 15.22 0.00 0.00 2.24
85 86 4.406649 CCCCATGGATCAATTTGCTAAAGT 59.593 41.667 15.22 0.00 0.00 2.66
86 87 4.650588 TCCCCATGGATCAATTTGCTAAAG 59.349 41.667 15.22 0.00 35.03 1.85
87 88 4.618635 TCCCCATGGATCAATTTGCTAAA 58.381 39.130 15.22 0.00 35.03 1.85
110 111 6.662865 TTCATGGGTTAATTCTTGCAGAAA 57.337 33.333 0.00 0.00 37.82 2.52
185 187 6.148150 CGGCCTTGTACAACTTCACTTTATTA 59.852 38.462 3.59 0.00 0.00 0.98
187 199 4.454504 CGGCCTTGTACAACTTCACTTTAT 59.545 41.667 3.59 0.00 0.00 1.40
200 212 4.823790 TTCTTTTCTTTCGGCCTTGTAC 57.176 40.909 0.00 0.00 0.00 2.90
250 262 6.210796 TCGACTGAGACTTTTGATTCGTTAA 58.789 36.000 0.00 0.00 0.00 2.01
251 263 5.765176 TCGACTGAGACTTTTGATTCGTTA 58.235 37.500 0.00 0.00 0.00 3.18
254 266 3.060098 GCTCGACTGAGACTTTTGATTCG 59.940 47.826 0.00 0.00 45.57 3.34
255 267 4.241681 AGCTCGACTGAGACTTTTGATTC 58.758 43.478 0.00 0.00 45.57 2.52
258 270 3.366476 GCTAGCTCGACTGAGACTTTTGA 60.366 47.826 7.70 0.00 45.57 2.69
259 271 2.920490 GCTAGCTCGACTGAGACTTTTG 59.080 50.000 7.70 0.00 45.57 2.44
260 272 2.823154 AGCTAGCTCGACTGAGACTTTT 59.177 45.455 12.68 0.00 45.57 2.27
261 273 2.163412 CAGCTAGCTCGACTGAGACTTT 59.837 50.000 16.15 0.00 45.57 2.66
299 311 9.616634 TTAAATACTCTGACAACAACGTAGTAG 57.383 33.333 0.00 0.00 45.00 2.57
300 312 9.398170 GTTAAATACTCTGACAACAACGTAGTA 57.602 33.333 0.00 0.00 45.00 1.82
365 378 6.042208 AGTCTTATAAATCGGAAAGGAGGGAG 59.958 42.308 0.00 0.00 0.00 4.30
366 379 5.903589 AGTCTTATAAATCGGAAAGGAGGGA 59.096 40.000 0.00 0.00 0.00 4.20
368 381 6.817184 TGAGTCTTATAAATCGGAAAGGAGG 58.183 40.000 0.00 0.00 0.00 4.30
369 382 8.894768 ATTGAGTCTTATAAATCGGAAAGGAG 57.105 34.615 0.00 0.00 0.00 3.69
370 383 9.326413 GAATTGAGTCTTATAAATCGGAAAGGA 57.674 33.333 0.00 0.00 0.00 3.36
371 384 9.109393 TGAATTGAGTCTTATAAATCGGAAAGG 57.891 33.333 0.00 0.00 0.00 3.11
383 396 9.300681 TGGTGAGATTTTTGAATTGAGTCTTAT 57.699 29.630 0.00 0.00 0.00 1.73
384 397 8.690203 TGGTGAGATTTTTGAATTGAGTCTTA 57.310 30.769 0.00 0.00 0.00 2.10
385 398 7.587037 TGGTGAGATTTTTGAATTGAGTCTT 57.413 32.000 0.00 0.00 0.00 3.01
386 399 7.428826 GTTGGTGAGATTTTTGAATTGAGTCT 58.571 34.615 0.00 0.00 0.00 3.24
387 400 6.642540 GGTTGGTGAGATTTTTGAATTGAGTC 59.357 38.462 0.00 0.00 0.00 3.36
388 401 6.098124 TGGTTGGTGAGATTTTTGAATTGAGT 59.902 34.615 0.00 0.00 0.00 3.41
389 402 6.514947 TGGTTGGTGAGATTTTTGAATTGAG 58.485 36.000 0.00 0.00 0.00 3.02
390 403 6.477053 TGGTTGGTGAGATTTTTGAATTGA 57.523 33.333 0.00 0.00 0.00 2.57
391 404 6.985645 TCTTGGTTGGTGAGATTTTTGAATTG 59.014 34.615 0.00 0.00 0.00 2.32
392 405 7.123355 TCTTGGTTGGTGAGATTTTTGAATT 57.877 32.000 0.00 0.00 0.00 2.17
393 406 6.729690 TCTTGGTTGGTGAGATTTTTGAAT 57.270 33.333 0.00 0.00 0.00 2.57
394 407 6.729690 ATCTTGGTTGGTGAGATTTTTGAA 57.270 33.333 0.00 0.00 0.00 2.69
395 408 7.230747 TCTATCTTGGTTGGTGAGATTTTTGA 58.769 34.615 0.00 0.00 32.68 2.69
396 409 7.452880 TCTATCTTGGTTGGTGAGATTTTTG 57.547 36.000 0.00 0.00 32.68 2.44
397 410 7.890127 TCATCTATCTTGGTTGGTGAGATTTTT 59.110 33.333 0.00 0.00 32.68 1.94
398 411 7.405292 TCATCTATCTTGGTTGGTGAGATTTT 58.595 34.615 0.00 0.00 32.68 1.82
399 412 6.962182 TCATCTATCTTGGTTGGTGAGATTT 58.038 36.000 0.00 0.00 32.68 2.17
400 413 6.566079 TCATCTATCTTGGTTGGTGAGATT 57.434 37.500 0.00 0.00 32.68 2.40
401 414 6.328410 TCATCATCTATCTTGGTTGGTGAGAT 59.672 38.462 0.00 0.00 34.67 2.75
402 415 5.662657 TCATCATCTATCTTGGTTGGTGAGA 59.337 40.000 0.00 0.00 0.00 3.27
403 416 5.922053 TCATCATCTATCTTGGTTGGTGAG 58.078 41.667 0.00 0.00 0.00 3.51
404 417 5.426509 ACTCATCATCTATCTTGGTTGGTGA 59.573 40.000 0.00 0.00 0.00 4.02
405 418 5.526479 CACTCATCATCTATCTTGGTTGGTG 59.474 44.000 0.00 0.00 0.00 4.17
406 419 5.397221 CCACTCATCATCTATCTTGGTTGGT 60.397 44.000 0.00 0.00 0.00 3.67
407 420 5.061853 CCACTCATCATCTATCTTGGTTGG 58.938 45.833 0.00 0.00 0.00 3.77
408 421 5.526479 CACCACTCATCATCTATCTTGGTTG 59.474 44.000 0.00 0.00 33.77 3.77
409 422 5.397221 CCACCACTCATCATCTATCTTGGTT 60.397 44.000 0.00 0.00 33.77 3.67
410 423 4.102210 CCACCACTCATCATCTATCTTGGT 59.898 45.833 0.00 0.00 36.53 3.67
411 424 4.346127 TCCACCACTCATCATCTATCTTGG 59.654 45.833 0.00 0.00 0.00 3.61
412 425 5.541953 TCCACCACTCATCATCTATCTTG 57.458 43.478 0.00 0.00 0.00 3.02
413 426 6.760440 ATTCCACCACTCATCATCTATCTT 57.240 37.500 0.00 0.00 0.00 2.40
414 427 7.015680 AGTATTCCACCACTCATCATCTATCT 58.984 38.462 0.00 0.00 0.00 1.98
415 428 7.238486 AGTATTCCACCACTCATCATCTATC 57.762 40.000 0.00 0.00 0.00 2.08
416 429 7.623999 AAGTATTCCACCACTCATCATCTAT 57.376 36.000 0.00 0.00 0.00 1.98
417 430 7.437713 AAAGTATTCCACCACTCATCATCTA 57.562 36.000 0.00 0.00 0.00 1.98
418 431 5.965033 AAGTATTCCACCACTCATCATCT 57.035 39.130 0.00 0.00 0.00 2.90
419 432 8.682936 ATAAAAGTATTCCACCACTCATCATC 57.317 34.615 0.00 0.00 0.00 2.92
420 433 9.784531 CTATAAAAGTATTCCACCACTCATCAT 57.215 33.333 0.00 0.00 0.00 2.45
421 434 8.768397 ACTATAAAAGTATTCCACCACTCATCA 58.232 33.333 0.00 0.00 36.36 3.07
422 435 9.614792 AACTATAAAAGTATTCCACCACTCATC 57.385 33.333 0.00 0.00 37.50 2.92
423 436 9.975218 AAACTATAAAAGTATTCCACCACTCAT 57.025 29.630 0.00 0.00 37.50 2.90
424 437 9.226606 CAAACTATAAAAGTATTCCACCACTCA 57.773 33.333 0.00 0.00 37.50 3.41
425 438 8.182227 GCAAACTATAAAAGTATTCCACCACTC 58.818 37.037 0.00 0.00 37.50 3.51
426 439 7.668052 TGCAAACTATAAAAGTATTCCACCACT 59.332 33.333 0.00 0.00 37.50 4.00
427 440 7.822658 TGCAAACTATAAAAGTATTCCACCAC 58.177 34.615 0.00 0.00 37.50 4.16
428 441 8.410673 TTGCAAACTATAAAAGTATTCCACCA 57.589 30.769 0.00 0.00 37.50 4.17
429 442 9.699703 TTTTGCAAACTATAAAAGTATTCCACC 57.300 29.630 12.39 0.00 37.50 4.61
431 444 9.699703 GGTTTTGCAAACTATAAAAGTATTCCA 57.300 29.630 12.39 0.00 37.50 3.53
432 445 9.146984 GGGTTTTGCAAACTATAAAAGTATTCC 57.853 33.333 12.39 0.00 37.50 3.01
433 446 9.699703 TGGGTTTTGCAAACTATAAAAGTATTC 57.300 29.630 12.39 0.00 37.50 1.75
437 450 8.972458 AATTGGGTTTTGCAAACTATAAAAGT 57.028 26.923 12.39 0.00 41.49 2.66
441 454 8.940952 GCATTAATTGGGTTTTGCAAACTATAA 58.059 29.630 12.39 6.01 31.63 0.98
442 455 8.317679 AGCATTAATTGGGTTTTGCAAACTATA 58.682 29.630 12.39 0.00 32.93 1.31
443 456 7.167535 AGCATTAATTGGGTTTTGCAAACTAT 58.832 30.769 12.39 0.38 32.93 2.12
444 457 6.529220 AGCATTAATTGGGTTTTGCAAACTA 58.471 32.000 12.39 0.00 32.93 2.24
445 458 5.375773 AGCATTAATTGGGTTTTGCAAACT 58.624 33.333 12.39 0.00 32.93 2.66
446 459 5.687770 AGCATTAATTGGGTTTTGCAAAC 57.312 34.783 12.39 7.26 32.93 2.93
447 460 6.705863 AAAGCATTAATTGGGTTTTGCAAA 57.294 29.167 8.05 8.05 32.93 3.68
448 461 6.705863 AAAAGCATTAATTGGGTTTTGCAA 57.294 29.167 12.36 0.00 41.52 4.08
452 465 8.194104 GGAAAACAAAAGCATTAATTGGGTTTT 58.806 29.630 8.92 8.92 43.21 2.43
453 466 7.559533 AGGAAAACAAAAGCATTAATTGGGTTT 59.440 29.630 0.00 0.00 36.38 3.27
454 467 7.059788 AGGAAAACAAAAGCATTAATTGGGTT 58.940 30.769 0.00 0.00 0.00 4.11
455 468 6.600388 AGGAAAACAAAAGCATTAATTGGGT 58.400 32.000 0.00 0.00 0.00 4.51
456 469 6.709846 TGAGGAAAACAAAAGCATTAATTGGG 59.290 34.615 0.00 0.00 0.00 4.12
457 470 7.727331 TGAGGAAAACAAAAGCATTAATTGG 57.273 32.000 0.00 0.00 0.00 3.16
510 523 9.198837 CATGTAATTTATGTATGCATGCATTGT 57.801 29.630 36.23 23.54 37.82 2.71
519 532 9.628746 TGATCAATGCATGTAATTTATGTATGC 57.371 29.630 0.00 12.50 43.21 3.14
558 571 9.299963 GTTGCATTAAATCATTACATGCAAGTA 57.700 29.630 21.58 0.00 44.52 2.24
559 572 8.036575 AGTTGCATTAAATCATTACATGCAAGT 58.963 29.630 21.58 21.37 44.52 3.16
560 573 8.415192 AGTTGCATTAAATCATTACATGCAAG 57.585 30.769 21.58 0.00 44.52 4.01
561 574 8.657729 CAAGTTGCATTAAATCATTACATGCAA 58.342 29.630 18.86 18.86 43.46 4.08
562 575 8.033626 TCAAGTTGCATTAAATCATTACATGCA 58.966 29.630 10.95 10.95 40.12 3.96
563 576 8.410030 TCAAGTTGCATTAAATCATTACATGC 57.590 30.769 0.00 6.72 36.78 4.06
569 582 9.932207 TCAGATTTCAAGTTGCATTAAATCATT 57.068 25.926 20.92 6.93 38.45 2.57
570 583 9.932207 TTCAGATTTCAAGTTGCATTAAATCAT 57.068 25.926 20.92 9.95 38.45 2.45
571 584 9.195411 GTTCAGATTTCAAGTTGCATTAAATCA 57.805 29.630 20.92 6.93 38.45 2.57
572 585 9.195411 TGTTCAGATTTCAAGTTGCATTAAATC 57.805 29.630 15.12 15.12 37.00 2.17
573 586 9.715121 ATGTTCAGATTTCAAGTTGCATTAAAT 57.285 25.926 0.00 0.00 0.00 1.40
574 587 8.980610 CATGTTCAGATTTCAAGTTGCATTAAA 58.019 29.630 0.00 0.00 0.00 1.52
575 588 8.143193 ACATGTTCAGATTTCAAGTTGCATTAA 58.857 29.630 0.00 0.00 0.00 1.40
576 589 7.595875 CACATGTTCAGATTTCAAGTTGCATTA 59.404 33.333 0.00 0.00 0.00 1.90
577 590 6.422701 CACATGTTCAGATTTCAAGTTGCATT 59.577 34.615 0.00 0.00 0.00 3.56
578 591 5.924254 CACATGTTCAGATTTCAAGTTGCAT 59.076 36.000 0.00 0.00 0.00 3.96
579 592 5.067544 TCACATGTTCAGATTTCAAGTTGCA 59.932 36.000 0.00 0.00 0.00 4.08
580 593 5.522456 TCACATGTTCAGATTTCAAGTTGC 58.478 37.500 0.00 0.00 0.00 4.17
581 594 6.584942 CCATCACATGTTCAGATTTCAAGTTG 59.415 38.462 0.00 0.00 0.00 3.16
582 595 6.491062 TCCATCACATGTTCAGATTTCAAGTT 59.509 34.615 0.00 0.00 0.00 2.66
583 596 6.005823 TCCATCACATGTTCAGATTTCAAGT 58.994 36.000 0.00 0.00 0.00 3.16
584 597 6.505044 TCCATCACATGTTCAGATTTCAAG 57.495 37.500 0.00 0.00 0.00 3.02
585 598 6.897706 TTCCATCACATGTTCAGATTTCAA 57.102 33.333 0.00 0.00 0.00 2.69
586 599 6.897706 TTTCCATCACATGTTCAGATTTCA 57.102 33.333 0.00 0.00 0.00 2.69
587 600 7.147312 TGTTTTCCATCACATGTTCAGATTTC 58.853 34.615 0.00 0.00 0.00 2.17
588 601 7.053316 TGTTTTCCATCACATGTTCAGATTT 57.947 32.000 0.00 0.00 0.00 2.17
589 602 6.653526 TGTTTTCCATCACATGTTCAGATT 57.346 33.333 0.00 0.00 0.00 2.40
590 603 6.449698 GTTGTTTTCCATCACATGTTCAGAT 58.550 36.000 0.00 0.00 0.00 2.90
591 604 5.221224 GGTTGTTTTCCATCACATGTTCAGA 60.221 40.000 0.00 0.00 0.00 3.27
592 605 4.984161 GGTTGTTTTCCATCACATGTTCAG 59.016 41.667 0.00 0.00 0.00 3.02
593 606 4.403752 TGGTTGTTTTCCATCACATGTTCA 59.596 37.500 0.00 0.00 0.00 3.18
594 607 4.942852 TGGTTGTTTTCCATCACATGTTC 58.057 39.130 0.00 0.00 0.00 3.18
595 608 5.350504 TTGGTTGTTTTCCATCACATGTT 57.649 34.783 0.00 0.00 34.75 2.71
596 609 5.350504 TTTGGTTGTTTTCCATCACATGT 57.649 34.783 0.00 0.00 34.75 3.21
597 610 6.482641 TCAATTTGGTTGTTTTCCATCACATG 59.517 34.615 0.00 0.00 38.95 3.21
598 611 6.590068 TCAATTTGGTTGTTTTCCATCACAT 58.410 32.000 0.00 0.00 38.95 3.21
599 612 5.982356 TCAATTTGGTTGTTTTCCATCACA 58.018 33.333 0.00 0.00 38.95 3.58
600 613 6.538381 AGTTCAATTTGGTTGTTTTCCATCAC 59.462 34.615 0.00 0.00 38.95 3.06
601 614 6.648192 AGTTCAATTTGGTTGTTTTCCATCA 58.352 32.000 0.00 0.00 38.95 3.07
602 615 7.552458 AAGTTCAATTTGGTTGTTTTCCATC 57.448 32.000 0.00 0.00 38.95 3.51
603 616 7.936496 AAAGTTCAATTTGGTTGTTTTCCAT 57.064 28.000 0.00 0.00 38.95 3.41
647 660 9.689501 TCCGGTTTATAAGGTTTATCTCAAAAT 57.310 29.630 0.00 0.00 0.00 1.82
648 661 9.517868 TTCCGGTTTATAAGGTTTATCTCAAAA 57.482 29.630 0.00 0.00 0.00 2.44
649 662 9.517868 TTTCCGGTTTATAAGGTTTATCTCAAA 57.482 29.630 0.00 0.00 0.00 2.69
650 663 9.169592 CTTTCCGGTTTATAAGGTTTATCTCAA 57.830 33.333 0.00 0.00 0.00 3.02
651 664 7.771826 CCTTTCCGGTTTATAAGGTTTATCTCA 59.228 37.037 0.00 0.00 33.93 3.27
652 665 7.989170 TCCTTTCCGGTTTATAAGGTTTATCTC 59.011 37.037 0.00 0.00 38.59 2.75
653 666 7.864770 TCCTTTCCGGTTTATAAGGTTTATCT 58.135 34.615 0.00 0.00 38.59 1.98
654 667 7.228108 CCTCCTTTCCGGTTTATAAGGTTTATC 59.772 40.741 0.00 0.00 38.59 1.75
655 668 7.058525 CCTCCTTTCCGGTTTATAAGGTTTAT 58.941 38.462 0.00 0.00 38.59 1.40
656 669 6.417258 CCTCCTTTCCGGTTTATAAGGTTTA 58.583 40.000 0.00 0.00 38.59 2.01
657 670 5.258841 CCTCCTTTCCGGTTTATAAGGTTT 58.741 41.667 0.00 0.00 38.59 3.27
658 671 4.324797 CCCTCCTTTCCGGTTTATAAGGTT 60.325 45.833 0.00 0.00 38.59 3.50
659 672 3.201487 CCCTCCTTTCCGGTTTATAAGGT 59.799 47.826 0.00 0.00 38.59 3.50
660 673 3.457012 TCCCTCCTTTCCGGTTTATAAGG 59.543 47.826 0.00 8.36 38.78 2.69
661 674 4.163649 ACTCCCTCCTTTCCGGTTTATAAG 59.836 45.833 0.00 0.00 0.00 1.73
662 675 4.106324 ACTCCCTCCTTTCCGGTTTATAA 58.894 43.478 0.00 0.00 0.00 0.98
663 676 3.727948 ACTCCCTCCTTTCCGGTTTATA 58.272 45.455 0.00 0.00 0.00 0.98
664 677 2.558974 ACTCCCTCCTTTCCGGTTTAT 58.441 47.619 0.00 0.00 0.00 1.40
665 678 2.034436 ACTCCCTCCTTTCCGGTTTA 57.966 50.000 0.00 0.00 0.00 2.01
666 679 2.034436 TACTCCCTCCTTTCCGGTTT 57.966 50.000 0.00 0.00 0.00 3.27
667 680 1.838077 CATACTCCCTCCTTTCCGGTT 59.162 52.381 0.00 0.00 0.00 4.44
668 681 1.497161 CATACTCCCTCCTTTCCGGT 58.503 55.000 0.00 0.00 0.00 5.28
669 682 0.106894 GCATACTCCCTCCTTTCCGG 59.893 60.000 0.00 0.00 0.00 5.14
670 683 0.830648 TGCATACTCCCTCCTTTCCG 59.169 55.000 0.00 0.00 0.00 4.30
671 684 1.475930 GCTGCATACTCCCTCCTTTCC 60.476 57.143 0.00 0.00 0.00 3.13
672 685 1.210478 TGCTGCATACTCCCTCCTTTC 59.790 52.381 0.00 0.00 0.00 2.62
673 686 1.289160 TGCTGCATACTCCCTCCTTT 58.711 50.000 0.00 0.00 0.00 3.11
674 687 1.289160 TTGCTGCATACTCCCTCCTT 58.711 50.000 1.84 0.00 0.00 3.36
675 688 1.289160 TTTGCTGCATACTCCCTCCT 58.711 50.000 1.84 0.00 0.00 3.69
676 689 1.745653 GTTTTGCTGCATACTCCCTCC 59.254 52.381 1.84 0.00 0.00 4.30
677 690 2.436417 TGTTTTGCTGCATACTCCCTC 58.564 47.619 1.84 0.00 0.00 4.30
678 691 2.584835 TGTTTTGCTGCATACTCCCT 57.415 45.000 1.84 0.00 0.00 4.20
679 692 3.874392 AATGTTTTGCTGCATACTCCC 57.126 42.857 1.84 0.00 0.00 4.30
680 693 3.928375 CCAAATGTTTTGCTGCATACTCC 59.072 43.478 1.84 0.00 0.00 3.85
681 694 4.559153 ACCAAATGTTTTGCTGCATACTC 58.441 39.130 1.84 0.00 0.00 2.59
682 695 4.605640 ACCAAATGTTTTGCTGCATACT 57.394 36.364 1.84 0.00 0.00 2.12
683 696 4.625311 GGTACCAAATGTTTTGCTGCATAC 59.375 41.667 7.15 5.81 0.00 2.39
684 697 4.526262 AGGTACCAAATGTTTTGCTGCATA 59.474 37.500 15.94 0.00 0.00 3.14
685 698 3.324556 AGGTACCAAATGTTTTGCTGCAT 59.675 39.130 15.94 0.00 0.00 3.96
773 795 0.737715 GAGTGCCCACTGACGATGAC 60.738 60.000 5.53 0.00 42.66 3.06
844 869 1.228245 CATATTGGGCCCACCTCCG 60.228 63.158 28.70 8.66 41.11 4.63
992 1018 3.771110 GAGAGGGCCATGGCAGCTC 62.771 68.421 36.56 30.67 44.11 4.09
994 1020 4.891037 GGAGAGGGCCATGGCAGC 62.891 72.222 36.56 24.06 44.11 5.25
1102 1161 4.828925 GCTCAGCACGCCCTCCTC 62.829 72.222 0.00 0.00 0.00 3.71
1133 1192 0.461961 AAGAAGAAGATCCGGCGAGG 59.538 55.000 9.30 0.00 42.97 4.63
1134 1193 1.537135 GGAAGAAGAAGATCCGGCGAG 60.537 57.143 9.30 0.00 0.00 5.03
1135 1194 0.460311 GGAAGAAGAAGATCCGGCGA 59.540 55.000 9.30 0.00 0.00 5.54
1136 1195 0.530870 GGGAAGAAGAAGATCCGGCG 60.531 60.000 0.00 0.00 33.90 6.46
1137 1196 0.541863 TGGGAAGAAGAAGATCCGGC 59.458 55.000 0.00 0.00 33.90 6.13
1138 1197 2.843701 CATGGGAAGAAGAAGATCCGG 58.156 52.381 0.00 0.00 33.90 5.14
1139 1198 2.158842 AGCATGGGAAGAAGAAGATCCG 60.159 50.000 0.00 0.00 33.90 4.18
1140 1199 3.475575 GAGCATGGGAAGAAGAAGATCC 58.524 50.000 0.00 0.00 0.00 3.36
1141 1200 3.129871 CGAGCATGGGAAGAAGAAGATC 58.870 50.000 0.00 0.00 0.00 2.75
1142 1201 2.744494 GCGAGCATGGGAAGAAGAAGAT 60.744 50.000 0.00 0.00 0.00 2.40
1143 1202 1.406069 GCGAGCATGGGAAGAAGAAGA 60.406 52.381 0.00 0.00 0.00 2.87
1144 1203 1.012841 GCGAGCATGGGAAGAAGAAG 58.987 55.000 0.00 0.00 0.00 2.85
1145 1204 0.740868 CGCGAGCATGGGAAGAAGAA 60.741 55.000 0.00 0.00 0.00 2.52
1220 1279 4.735132 ACGACGTGGTCATGGGCG 62.735 66.667 0.00 0.00 32.09 6.13
1221 1280 2.813908 GACGACGTGGTCATGGGC 60.814 66.667 23.70 0.00 36.91 5.36
1656 1781 1.617755 AACATCTTCTCGTGCGTGCG 61.618 55.000 0.00 0.00 0.00 5.34
1657 1782 0.512952 AAACATCTTCTCGTGCGTGC 59.487 50.000 0.00 0.00 0.00 5.34
1658 1783 2.949714 AAAACATCTTCTCGTGCGTG 57.050 45.000 0.00 0.00 0.00 5.34
1767 1895 2.160205 AGGATCATGCATGCATAGTGC 58.840 47.619 31.73 25.42 45.29 4.40
1768 1896 3.818773 TCAAGGATCATGCATGCATAGTG 59.181 43.478 31.73 21.76 34.91 2.74
1769 1897 4.094830 TCAAGGATCATGCATGCATAGT 57.905 40.909 31.73 22.49 34.91 2.12
1770 1898 5.644977 AATCAAGGATCATGCATGCATAG 57.355 39.130 31.73 23.99 34.91 2.23
1771 1899 8.990163 ATATAATCAAGGATCATGCATGCATA 57.010 30.769 31.73 19.92 34.91 3.14
1772 1900 7.898014 ATATAATCAAGGATCATGCATGCAT 57.102 32.000 27.46 27.46 37.08 3.96
1773 1901 8.990163 ATATATAATCAAGGATCATGCATGCA 57.010 30.769 25.04 25.04 0.00 3.96
1844 1975 2.033065 GCATCGATCAAGCAGCAAGTAG 60.033 50.000 0.00 0.00 0.00 2.57
1861 1992 2.104859 TTCGAGCAGCAGCAGCATC 61.105 57.895 12.92 5.94 45.49 3.91
1871 2002 1.148157 AATCGGCGATGTTCGAGCAG 61.148 55.000 24.73 0.00 43.74 4.24
1872 2003 0.739462 AAATCGGCGATGTTCGAGCA 60.739 50.000 24.73 3.86 43.74 4.26
1873 2004 0.042967 GAAATCGGCGATGTTCGAGC 60.043 55.000 24.73 1.10 43.74 5.03
1930 2061 1.227205 CATCTCCTGCTCGCTGGAC 60.227 63.158 12.72 0.00 38.79 4.02
2023 2154 5.614308 TCCAGTAATCAGCCAACAGATATG 58.386 41.667 0.00 0.00 0.00 1.78
2024 2155 5.894298 TCCAGTAATCAGCCAACAGATAT 57.106 39.130 0.00 0.00 0.00 1.63
2025 2156 5.455183 CCATCCAGTAATCAGCCAACAGATA 60.455 44.000 0.00 0.00 0.00 1.98
2062 2193 5.163499 GGAATAAGAAGGACACAGAGACGAT 60.163 44.000 0.00 0.00 0.00 3.73
2063 2194 4.158025 GGAATAAGAAGGACACAGAGACGA 59.842 45.833 0.00 0.00 0.00 4.20
2064 2195 4.158764 AGGAATAAGAAGGACACAGAGACG 59.841 45.833 0.00 0.00 0.00 4.18
2065 2196 5.186021 TGAGGAATAAGAAGGACACAGAGAC 59.814 44.000 0.00 0.00 0.00 3.36
2129 2262 5.120208 CGGCCGGTGACAAGAAATTATATAG 59.880 44.000 20.10 0.00 0.00 1.31
2132 2265 3.118702 TCGGCCGGTGACAAGAAATTATA 60.119 43.478 27.83 0.00 0.00 0.98
2133 2266 2.014128 CGGCCGGTGACAAGAAATTAT 58.986 47.619 20.10 0.00 0.00 1.28
2135 2268 0.250553 TCGGCCGGTGACAAGAAATT 60.251 50.000 27.83 0.00 0.00 1.82
2136 2269 0.250553 TTCGGCCGGTGACAAGAAAT 60.251 50.000 27.83 0.00 0.00 2.17
2139 2272 1.301401 CTTTCGGCCGGTGACAAGA 60.301 57.895 27.83 0.00 0.00 3.02
2141 2274 1.153127 AACTTTCGGCCGGTGACAA 60.153 52.632 27.83 9.02 0.00 3.18
2142 2275 1.890041 CAACTTTCGGCCGGTGACA 60.890 57.895 27.83 1.12 0.00 3.58
2143 2276 2.613506 CCAACTTTCGGCCGGTGAC 61.614 63.158 27.83 0.00 0.00 3.67
2196 2329 2.371510 GGAGGGGAGAGAAGAATGATGG 59.628 54.545 0.00 0.00 0.00 3.51
2224 2357 2.630098 TGAGAGAGAGTGTCACAAAGGG 59.370 50.000 5.62 0.00 0.00 3.95
2225 2358 4.533919 ATGAGAGAGAGTGTCACAAAGG 57.466 45.455 5.62 0.00 29.56 3.11
2226 2359 6.507958 TCTATGAGAGAGAGTGTCACAAAG 57.492 41.667 5.62 0.00 29.56 2.77
2242 2379 6.266168 ACACACACTTTCTCTCTCTATGAG 57.734 41.667 0.00 0.00 43.96 2.90
2243 2380 7.394641 ACATACACACACTTTCTCTCTCTATGA 59.605 37.037 0.00 0.00 0.00 2.15
2244 2381 7.542890 ACATACACACACTTTCTCTCTCTATG 58.457 38.462 0.00 0.00 0.00 2.23
2245 2382 7.710676 ACATACACACACTTTCTCTCTCTAT 57.289 36.000 0.00 0.00 0.00 1.98
2246 2383 8.678199 CATACATACACACACTTTCTCTCTCTA 58.322 37.037 0.00 0.00 0.00 2.43
2247 2384 7.394641 TCATACATACACACACTTTCTCTCTCT 59.605 37.037 0.00 0.00 0.00 3.10
2249 2386 7.468141 TCATACATACACACACTTTCTCTCT 57.532 36.000 0.00 0.00 0.00 3.10
2318 2462 4.080863 GGCATATGTACCCATAGGAGAAGG 60.081 50.000 4.29 0.00 37.49 3.46
2319 2463 4.080863 GGGCATATGTACCCATAGGAGAAG 60.081 50.000 12.28 0.00 46.22 2.85
2352 2496 7.971168 ACAGACATAGACGAGCATATATAAAGC 59.029 37.037 0.00 3.10 0.00 3.51
2353 2497 9.847706 AACAGACATAGACGAGCATATATAAAG 57.152 33.333 0.00 0.00 0.00 1.85
2367 2511 4.876107 CCACCACCATAAACAGACATAGAC 59.124 45.833 0.00 0.00 0.00 2.59
2381 2527 2.520458 CACCACCACCACCACCAT 59.480 61.111 0.00 0.00 0.00 3.55
2382 2528 3.814906 CCACCACCACCACCACCA 61.815 66.667 0.00 0.00 0.00 4.17
2406 2552 1.068474 CGGTCTTTGCTTTCGACGAT 58.932 50.000 0.00 0.00 0.00 3.73
2460 2606 6.019801 CACTAGAGACGTAAAATGATTTCCCG 60.020 42.308 0.00 7.38 32.43 5.14
2498 2645 0.039708 GCAGCACAAAAGAGGCAGTC 60.040 55.000 0.00 0.00 0.00 3.51
2561 2712 5.702865 CATCATTCCACAACATTCTTTCGT 58.297 37.500 0.00 0.00 0.00 3.85
2562 2713 4.560035 GCATCATTCCACAACATTCTTTCG 59.440 41.667 0.00 0.00 0.00 3.46
2564 2715 5.471556 TGCATCATTCCACAACATTCTTT 57.528 34.783 0.00 0.00 0.00 2.52
2570 2721 3.764972 ACATCATGCATCATTCCACAACA 59.235 39.130 0.00 0.00 0.00 3.33


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.