>input_sequence_73449
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------ATGGCCCTCTCCGACGTCGACCTCGACTTCGAGGCCTTCCTCGCCTACCTCGGCTCCGGCCTGGACGAGGCGCC
---GCCGT---------CCGTGCCGGCCATGTCCTCGCCGGAGGAGGGCGTGCTGAGCCCCGCTGCCCCGTCCTCGCCGG
ATCTTCTTCTTCCCATGCTCGCGTCGTCGCCGGAGGAGGGCATGCTGCTGAGCCCCGCCGCCCCGTCGCTGGAGGCGCCG
------------------------------------------------------------------CCCATGACCACGTC
GTCGCCGGAGGAGGGCACGTCGTCGGGATCCGCGGGGACCGTCGCCGCCGCCGGACCAGACGACGGCGACAGGGAGCGGA
GGCTCCGCCGCAAGGTGTCCAACCGCGAGTCGGCGCGCCGGTCACGCGCGCGCAAGCAGCGGCACCTCGAGGAGCAGCGC
GCCGCGGCCGCCACGCTCCGGGCCGGGAACCGGCACCTCGCCGAGAAGCTCCGGGTGGCCAGGGCGCGCGCGGGGCTCGT
CGCGCTCGCCAACGCCCGCCTCCGCGCCCAGGGCCAGGCCCTGAGCCGCCGCCTCGACGCCGCGCGCCAGGCCCTCGCCC
TCAGGCAGCTCTACGCCGCCGCGTCGGCCTCCGGCGGCGCCCTGGACATGCAGGCGCTCGCCTCGCTGATCCGGTAG---
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>chr5B_1_TraesCS5B01G009200
AGGAAGGTGGTTGTGACTAGCGAACAGATGGAAAACAATGGAGGGAATCCCGCTAGCGGTGTGCAATCAGAGAGAATCGT
TCGGTACTTTAGCAAATTGATCCATGGGGATTTCTGCA-AGAATTAACCCATGAAATTACATGTCTCCATATATATCCTG
GTTGACCAACCTTGGATATCACCGGCT----------AATAAAGTGAAGTTGTACAAGGCCGAAAGAAAAGAATCTCAAG
TGCCGTGAGGTAATTAATTAATTAACGAATCAAAAGTCTCAGTCGAGCTAGCTGGTTCACAGCAGGCAAACTACTACGTT
GTTGTCAGAGTATTTAACCTTGTGACCATCGAGATGTAATA-AATAAATAAATTATACTCCCTCCTTTCCGATTTATAAG
ACTCAATTCAAAAATCTCACCAACCAAGATAGATGATGAGTGGTGGAATACTTTTATAGTTTGCAAAACCCAATTAATGC
TTTTGTTTTCCTCAAAAAAATATGTTTATCAATGCATTAATTACAATGCATGCATACATAAATTACATGCATTGATCAAT
TTTCTCTTAATACTTGCATGTAATGATTTAATGCAACTTGAAATCTGAACATGTGATGGAAAACAACCAAATTGAACTTT
ATAAAATGGAAAAACTAAAATTTTGAGATAAACCTTATAAACCGGAAAGGAGGGAGTATGCAGCAAAACATTTGGTACCT
CGACGTCGAGATCGATCGACAACGCACCACCATCGGCACGAC-------TTTTTTTTAA--AAAAAGAAAAAAGG-TCAT
CGTCAGTGGGCACTCGCTACCGAGGCGCGTG--GGCCCACGCGGGACGTCCACGAGAAGGGGAAAAAACGGAGGTGGGCC
CAATATGGCAGCCCGCCACCGGCCG-TCCGAAACGGGCTATAAATAGGGCCCTCCTACACTTGTCTCCCTCCCTTTTCCC
TCTCCCGCCACTCGCACAGCACACTCCAGGTTACGCTGTGACGCTTCTGCCCCTGGCGAG--------------------
-CTGCCATGGCCCTCTCCGACGTCGACCTCGACTTCGAGGCCTTCCTCGCCTACCTCGGCTCCGGCCTGGACGAGGCGCC
---GCCGT---------CCGTGCCGGCCATGTCCTCGCCGGAGGAGGGCGTGCTGAGCCCCGCTGCCCCGTCCTCGCCGG
ATCTTCTTCTTCCCATGCTCGCGTCGTCGCCGGAGGAGGGCATGCTGCTGAGCCCCGCCGCCCCGTCGCTGGAGGCGCCG
------------------------------------------------------------------CCCATGACCACGTC
GTCGCCGGAGGAGGGCACGTCGTCGGGATCCGCGGGGACCGTCGCCGCCGCCGGACCAGACGACGGCGACAGGGAGCGGA
GGCTCCGCCGCAAGGTGTCCAACCGCGAGTCGGCGCGCCGGTCACGCGCGCGCAAGCAGCGGCACCTCGAGGAGCAGCGC
GCCGCGGCCGCCACGCTCCGGGCCGGGAACCGGCACCTCGCCGAGAAGCTCCGGGTGGCCAGGGCGCGCGCGGGGCTCGT
CGCGCTCGCCAACGCCCGCCTCCGCGCCCAGGGCCAGGCCCTGAGCCGCCGCCTCGACGCCGCGCGCCAGGCCCTCGCCC
TCAGGCAGCTCTACGCCGCCGCGTCGGCCTCCGGCGGCGCCCTGGACATGCAGGCGCTCGCCTCGCTGATCCGGTAGCAA
AGCGCATGGCACGGCGCGGGCGCACGCACGAGAAGATGTTTTTTGACCTGCTG---CAACATCGATCGAACGAACGAACG
GACGACGAACGTACGACGGACGGGCTGCTATTAATCACAACCCATAAGAAGCTAGCACTATGCATGCATGATCCTTGATT
ATATATAAAAGCAAGAAATTGTGGATGGAAAATGGCACCAAA---AAAACGTACCTACTTGCTGCTTGATCGATGCTGCT
GCTGCTCGAACATCGCCGATTTCTGCGCTCCCTCTGATCGGAAATGGACGGCCAGGATCGGTCCAGCGAGCAGGAGATGC
TCTTCGACTCCCTCCGCTGGATCTCAATTATTGTTGTCTCTGTGATTTAGTAGCTAGTGCTGCAGCTTTGCTACATATCT
GTTGGCTGATTACTGGATGGATGTATCCATCGATCG--TCTCTGTGTCCTTCTTATTCCTCATGTTTGGCACCTGTCACC
CTCATGCATGCCTCTCTAAATCTATATAATTTCTTGTCACCGGCCGAAAGTTGGTGAAGGAGTTGCACATATGCTTGTCC
TCATTGTCCCATCATTCTTCTCTCCCCTCCCTCCCTCCCT----TTGTGACACTCTCTCTCATAGAGAGAGAAAGTGTGT
GTATGTATGAAAG-------TGATGCACCATATATTAATTTTGTTGAGTATCGATCGATTCCCTTCTCCTATGGGTACAT
ATGCCCATGGCGGCTGCTTTATATATGCTCGTC--TATGTCTGTTTATGGTGGTGGTGGTGGTGGCGAGTCATCGTCGAA
AGCAAAGACCGCGAGGTAGTCATTGCGGTTTACGTCTCCTTTTTTC-GGGAAATCATTTTACGTCTCTAGTGTCTTTGAC
GAACGACTGCCTCTTTTGTGCTGCTTTT-CCAAGCTGATTTTGA---TGATGGCGCTTTCGCCACTCTTTCACGAAAGAA
TGTTGTGGAATGATGCATGATGTGAAACAGTAATTACACCAGCCATAAGATAGAAAAACCTTT
>chr5D_89
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--------TTAACTAATTGAGCCATGAGGACTTCTACACAGAATTAACCCATGAAATTACATGTCTCGATAT--ATCCTG
GTTGACCAAGCTTGGATATCACCGGC-------------TAAAGTGAAGTTCTACAAGGCCGAAAGAAAAGAATCTCAAG
TGCCGTGAGGTAATTAATTAACGAATCGG----AAGTCTCAGTCGAGCTAGCTGGTTCACAGCAGGCAAA---CTACGTT
GTTGTCAGAGTATTTAACCTTGTGACCATCGAGTGGCAATC-AATAAATTAATTAGCAGCA-------------------
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----------------------------------------------------------------AAAAGATTTGCTACCT
CGACGTCGAGATCGATCGACAACGCACCACCATCGGCACGAC-------TTTTTTTTTTCTAAAAGGAAAAAAGC-TCAT
CGTCAGTGGGCACTCGCTACCGAGGCGCGTG--GGCCCACGCGGGACGTCCACGAGAAGGA-AAAAAAAGGAGGTGGGCC
CAATGTGCCAGCCCGCCACCCGTCTCTCCGAAACGGGCTATAAATAGGGCCCTCCTACACTTGTCTCCCTCCCTTTTCCC
TCTCCCGCCACTCGCACAGCACACTCCAGGTTACGCTGTGACGCTTCTG----------CCCCTAGCCAACTGCTAGTGC
ACTGCCATGGCCCTCTCCGACGTCGACCTCGACTTCGAGGCCTTCCTCGCCCACCTCGCCTCCGGCCTCGACGCGCCGCC
TCCGACGCAGACGTCCCCCGTGCCGGCTCTGTCGTCGTCGCCGGA-----------------------------------
----TCTTCTTCCCATGCTCACGTCGTCGCCGGAGGCGGGC---CTGCTGAGCCCCGCTGCCCCGTCGCCGCTGGAAGTA
CCCATGGACACGTCGTCGCCGTCGGAGGGCGGCCTGCTGACCCCAGGTGCGCTGTCGCCGGATCTTCCCATGACCACGTC
GTCGCCGGAGGAGGGCACGTCGTCGGGATCGGCGGGGACCGTCGCCGTCGCCGGACCAGACGACGGCGACAGGGAGCGGA
GGCTCCGCCGCAAGGTGTCCAACCGCGAGTCGGCGCGCCGGTCACGCGCGCGCAAGCAGCGGCACCTCGAGGAGCAGCGC
GCCGCGGCCGCCACGCTCCGGGCCGGGAACCGGCACCTCGCCGAGAAGCTCCGGGTCGCCAGGGCGCGCGCGGGGCTCGT
CGCGCTCGCCAACGCCCGCCTCCGCGCCCAGGGCCAGGCCCTGAGCCGACGCCTCGACGCCGCGCGCCAGGCCCTCGCCC
TCAGGCAGCTCTACGCCGCCGCGTCGGCCTCCGGCGGCGCCCTGGACATGCAGGCGCTCGCCTCGCTGATCCGGTAGC--
---GCATGGCACGGCGCGGG----CGCACGAGAAGATGTTTTTTGACCTGCTGGTGCAACATCGATCGAACGAACGAACG
ACGA-----------ACGTACGGGCTGCTATTAATCGAAACCCATAAGAAGCTATT-------ATGCATGATCCTTGAT-
--ATATAAAAGCAAGAAATTGTGTACGGAAAATGGCACCAAAAA--------ACGTACTTGCTGCTTGATCCATGCTGCT
G---CTCGAACATCGCCGATTTCTGCGCTCCCTTTGATCGGAAACGGACGGCCAGGATCGATCCAGCGAGCATGAGATGC
TCTTCCGCTCG--CCGCTGGATCTCAATTATTGTTGTCTCTGTGATTTAGTAGCTAGTGCTGCAGCTTTGCTATCGATCT
GTTGGCTGATTACTGGATGGATGTATCCATCGTCTCTCTCTCTGTGTCCTTCTTATTCCTCATGTTTGGCACCTGTCACC
CTCATGCTTGTCTCTCTAAATATAATTCCTTGC---TCACCGGCCGAAAGTTGGTGGACGAGTTGCACATATGCTTGTCC
TCATTGTCTCATCATTCTTCTCTCCCCTCCCTCCCTTTGTGTATGTGTGT--------------GCGAGAGAATGTGTGT
GTATATATGTATGAAAGCGATGATGCGCCATATATTAATTTTGTTGAGTATCGATCGATTA--TTCTCCTATGGGTACAT
ACGCCCATGGCGGCT---TTATATATGCTCATC--TATGTCTGTTTC---TGATGGTGGTGGTGGCGAGTCGTCGTCGGA
AGCATAGACCGCGAGGTAGTCATTGTGGTTTGCGTCTCCTTTTTTGA--GAAATCAATTTACGTCCCTAGTGTCTTT-AC
GAACCACTGCCTCTTTTGTGTTGCTTTTTCCAAGCTCATTTCGG---TGATGGCGCTTTCACCATTCTTTCTGGGAAGAA
CGTTGTGGAATGATGCATGATGTGAAACAGTAATTACACCAGCCATAAGA-------------
>chr5A_89
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--------TTAGCTAATTGATCCATGGGGACTTCTGCA-AGAATTAACCCATGAAATTACATGTCTCCATAT--ATCCCG
GTTGACCAACCTAGATATGAAATTACATGGTTAGCTAATTAAAGCGAAGTGCTACAAGGCCGGAAGAAAAGAATCTCAAG
TGAAGTGAGGTAATTAATTAACAAATCAAAAGGCAGTCTCAGTCGAGCTAGCTGGTTCACAGCAGGCAAA---CTACGTT
GTTGTCAGAGTATTTAACCTTGTGACCATCGAGCTGCAATATAATAAATAAATTATA-----------------------
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----------------------------------------------------------TGCAGCAAAACATTTGGTACCT
CGACGTCGAGATCGATCGACAACGCACCACCATCATCGACACGACTTTTTTTTTCTTTTCTAGAAAGAAAAAAGCTTCAT
CGTCAGTGGGCACTCGCTACCGAGGCGCGTGTGGGCCCACGCGGGACGTCCACGAGAAGAA-AAATAATGGAAGTGGGCC
CAATGTGGCAGCCCGCCACGGGCCG-TCCGGAACGGGCTATAAATAGGGCCCTCCTACACTTGTCTCCCTCCCTTTTCCC
TCTCCCGCCACTCGCACAGCACACTCCAGGTTACGCTGTGACGCTTCTGCCCCTGCCCACCCCTAGCGAACTGCTAGTGC
ACTGCCATGGCCCTCTCGGACGTCGACCACGACTTCGAGGCCTTCCTCGCCTTCCTCGCCTCCGGCCTGGACGCGCCGCC
---GACGCAGACGTCCCCCGTGCCGGCTCCGTCGTCGTCGCCGGA-----------------------------------
----TCTTCTTCCCATGCTCACGTCGTCGCCGGAGGAGGGC---CTGCTGAGCCCCGCTGCCCCGTCGCCGCTGGAAGTA
CCCATGGCCACGTCGTCACCGTCGGAGGGCGGCCTGCTGACCCCAGTTGCGCTGTCGCCGGATCTTCCCATGACCACGTC
GTCGCCGGAGGAGGGCACGTCGTCGGGATCGGCGGGGGCCGTTGCCGTCGCCGGG---GACGACGGCGACAGGGAGCGGA
GGCTCCGCCGCAAGGTGTCCAACCGCGAGTCGGCGCGCCGGTCGCGCGCGCGCAAGCAGCGGCACCTCGAGGAGCAGCGC
GCCGCGGCCGCCACGCTCCGGGCCGGGAACCGGCACCTCGCCGAGAAGCTCCGGGTCGCCAGGGCGCGCGCTGGGCTCAT
CACGCTCGCCAACGCCCGCCTCCGCGCCCAGGGCCAGGCTCTGGGCCAGCGTCTCGCCGCAGCACGCCAGGCCCTCGCCC
TCAGGCAGCTATACGCCGCCGCGTCGGCCTCCGGCGGCGCCCTGGACATGCAGGCGCTCGCCTCGCTGATCCGGTAGC--
---GCATGGCACGGCGCGGG----CGCACGAGAAGATGTTTTTTGACCTGCTG---CAAGATT--------GAACGAACG
AACGACGAACGTACGTACGACGGGCTGCTATTAATCACAACCCATAAGATGCTATT-------ATGCATGATCCTTGATG
ATATATAAAAGCAAGAAATTATGGATGGAAAATGGTACCGAAATTAAAACGTACGTACTTGCTGCTTGA-----------
-----TCGAACATCGCCGATTTCTGCGCTCCCTCCGATTGGAAATGGACGGCCAGGATCGATCCAGCGAGCATGAGATGC
T--TCGACTCCCTCCGCTGGATCTCAATTATTGT---CTCTGTGATTTAGTAGCTAGTGCTTCAGCTTTGCTATCGATCT
GTTGGCCGATTACTGGATGGATGTATCCATCGTCTCTCTT--TGTGTCCTTCTTATTCCTCATGTTTGGCACCTGTCACC
CTCATTCATGTCTCTCTAAATATAATTTCTTGC---TCACCGGCCGAAAGTTGGTGGAAGAGTTGCACATATGCTTCTCC
TCATTGTCTCATCATTCTTCTC-CCCCTCCCTTCCTTTGT----GTGTGT--------------GCGAAAGAAAGTGTGT
GTGTATATGTATGAAAGC---GATGCGCCATATATTAATTTTGTTGAGTATCGGTTGATT-----CTCCTATGGGTACAT
ACGCCCGTGGCGGCT---TTATATATGCTCATCTATATGTCTGTTTC---TAGTGGTGGTGGTGGCGAGTCGTCGTCGAA
AGCAAAGACCGCGAGGTAGTCATTGCGGTTTACATCTCCTTTTTTGGGGGAAATCATTTTACGTCTCTAGTGTCTTTGAC
GAACCACTGTCTCTTTTGTGTTGCTTTTTCCAAGCTGACTCTTTCATTGATGGCACTTTCGCCACTCTTTTTGCGAAGAA
CGTTGTGGAATGATGCATGATGTGAAACAGTAATTACACCAGCCATAAGA-------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS-----S----------------S-----------------------------------------SS------
--------------------------S-----------S------------S----------------------------
---------------------SS--SS--SSSS-------------------------------------SSS-------
---------------------------------S--S--------------------SS-SSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------
---------------------------------------------------------SS---------------S-----
------------------------------------------------------------SS------S-----------
----S---------------------------------------------------------------------------
-------------------------------------------------------S-S-S--------------------
----------------------------------------------------------S--------------S-S----
----S--S-------------------SS----S---S--SS---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS----------------S--------------------SSS--------------S----------S-SS--SSSSS
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------------------------------S----------------S--------------------------------
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--------------------------------------------------------S-----------------------
------------------------------------------------S-------------------------------
------------------------------------------------------------------------------SS
SSS-----------------SSSS--------------------------------------------------------
S-----------------------------------------------------SSSSSSSSS----------------S
------------------------------------------------------S----------------S--------
-SSS--------------------------------------------------------S-----------S-------
-------------------------------------------------------------------------SSS----
--------------------------------SSSS--------------------------------------------
----------S----------S--SS-SS--S-SSS--------------------S-S---------------------
--------S---------------------------SSS-----S----SSSSSSSSSSSSSSS-S--------------
----S----S-S--------------S---------------------------------SSS-----------------
-S-------------SSS------------S---------------SSSS---------------------S--------
---------------------------------------------S----------------------------------
----S---------------S----------------------S---------------------------SS-S-----
S-------------------------------------------------SSSSSSSSSSSSS
>forward_311
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---------------------------------------------------CTGGTTCACAGCAGGCAAAC---------
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>reverse_2004
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---GCTCGAACATCGCCGATTTC---------------------------------------------------------
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