Multiple sequence alignment - TraesCS5B01G007100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5B01G007100 chr5B 100.000 3965 0 0 1 3965 8341588 8345552 0.000000e+00 7323.0
1 TraesCS5B01G007100 chr5D 90.723 2878 167 49 512 3340 8019517 8022343 0.000000e+00 3744.0
2 TraesCS5B01G007100 chr5D 91.296 494 26 4 1 493 8018987 8019464 0.000000e+00 658.0
3 TraesCS5B01G007100 chr5D 81.448 442 39 24 3356 3795 8022428 8022828 4.940000e-84 322.0
4 TraesCS5B01G007100 chr5D 84.868 152 23 0 577 728 388058334 388058485 1.910000e-33 154.0
5 TraesCS5B01G007100 chr5D 82.812 128 20 1 546 673 3569448 3569573 3.240000e-21 113.0
6 TraesCS5B01G007100 chr5A 91.705 2616 154 36 433 3005 6410501 6413096 0.000000e+00 3570.0
7 TraesCS5B01G007100 chr5A 74.569 1101 212 45 1009 2072 6422151 6423220 1.700000e-113 420.0
8 TraesCS5B01G007100 chr5A 89.080 348 23 9 115 458 6410140 6410476 6.130000e-113 418.0
9 TraesCS5B01G007100 chr5A 82.727 440 31 11 3357 3795 6413559 6413954 2.270000e-92 350.0
10 TraesCS5B01G007100 chr5A 79.452 146 29 1 539 684 564705367 564705223 7.010000e-18 102.0
11 TraesCS5B01G007100 chr5A 95.238 63 2 1 3063 3124 6413254 6413316 9.070000e-17 99.0
12 TraesCS5B01G007100 chr7D 79.439 214 37 6 555 762 629080192 629080404 1.150000e-30 145.0
13 TraesCS5B01G007100 chr7D 77.914 163 32 3 525 686 69577611 69577452 9.070000e-17 99.0
14 TraesCS5B01G007100 chr6B 74.583 240 49 9 514 747 673700263 673700496 1.170000e-15 95.3
15 TraesCS5B01G007100 chrUn 78.065 155 28 6 534 686 88466853 88467003 4.220000e-15 93.5
16 TraesCS5B01G007100 chr4A 88.158 76 8 1 82 157 631911270 631911344 5.460000e-14 89.8
17 TraesCS5B01G007100 chr1D 85.135 74 8 1 696 766 110782640 110782567 5.500000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5B01G007100 chr5B 8341588 8345552 3964 False 7323.000000 7323 100.000000 1 3965 1 chr5B.!!$F1 3964
1 TraesCS5B01G007100 chr5D 8018987 8022828 3841 False 1574.666667 3744 87.822333 1 3795 3 chr5D.!!$F3 3794
2 TraesCS5B01G007100 chr5A 6410140 6413954 3814 False 1109.250000 3570 89.687500 115 3795 4 chr5A.!!$F2 3680
3 TraesCS5B01G007100 chr5A 6422151 6423220 1069 False 420.000000 420 74.569000 1009 2072 1 chr5A.!!$F1 1063

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
574 668 1.201181 CACCTCCAAGAGACAGAGTCG 59.799 57.143 0.00 0.0 37.67 4.18 F
1510 1621 0.033920 TCAACACGCATCTGCTCAGT 59.966 50.000 0.09 0.0 39.32 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1603 1717 0.030773 TCAGTGTGAGCGTCTGTGTC 59.969 55.0 0.0 0.0 0.00 3.67 R
3126 3387 0.108585 GACTTGAGGTGGGTCAGCAA 59.891 55.0 0.0 0.0 33.95 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 3.217626 CCCCTCATATGGCAAAGAAGTC 58.782 50.000 2.13 0.00 0.00 3.01
117 118 1.617322 AAGTCGCTAGCCCATCGATA 58.383 50.000 9.66 0.00 34.61 2.92
201 202 2.478879 CGGCGAGGTTTGTTCAAGTTTT 60.479 45.455 0.00 0.00 0.00 2.43
210 211 5.229260 GGTTTGTTCAAGTTTTCGTGCTAAG 59.771 40.000 0.00 0.00 0.00 2.18
224 225 4.160439 TCGTGCTAAGATGAGGTCTTTGAT 59.840 41.667 3.96 0.00 44.80 2.57
243 244 1.843368 TACGGACAACCAGACTAGGG 58.157 55.000 0.00 0.00 35.59 3.53
251 252 3.591977 ACAACCAGACTAGGGGCTTTTAT 59.408 43.478 0.00 0.00 0.00 1.40
295 296 1.944024 ACGAACATCCGTTGCTTTTGA 59.056 42.857 0.00 0.00 40.17 2.69
314 315 8.450964 GCTTTTGATAGTAGTTGCATCTGTTTA 58.549 33.333 7.57 0.00 0.00 2.01
397 400 1.613630 AGACTGGACAAGGGCGGAT 60.614 57.895 0.00 0.00 0.00 4.18
409 412 1.564348 AGGGCGGATATTTGGTGACTT 59.436 47.619 0.00 0.00 0.00 3.01
474 528 9.569074 TGCCCCTATATATGGAAGATACTTTTA 57.431 33.333 5.67 0.00 0.00 1.52
531 625 4.765813 AACTACCCCTATTAACGCATGT 57.234 40.909 0.00 0.00 0.00 3.21
547 641 3.480470 GCATGTGCACATACCTTATCCT 58.520 45.455 30.92 4.06 41.59 3.24
551 645 6.878923 GCATGTGCACATACCTTATCCTTATA 59.121 38.462 30.92 0.00 41.59 0.98
574 668 1.201181 CACCTCCAAGAGACAGAGTCG 59.799 57.143 0.00 0.00 37.67 4.18
599 693 6.446318 GCACATTATCTTGAGGTTGACAAAA 58.554 36.000 0.00 0.00 0.00 2.44
608 702 2.028130 AGGTTGACAAAATCGCCACAA 58.972 42.857 0.00 0.00 0.00 3.33
678 772 6.019748 TCACCAAAAGGCCTGGAATAAATTA 58.980 36.000 16.13 0.00 37.40 1.40
732 826 2.257207 CTTGAACTCTGGTGGGTAGGA 58.743 52.381 0.00 0.00 0.00 2.94
741 835 3.012502 TCTGGTGGGTAGGAGATACAACT 59.987 47.826 0.00 0.00 35.96 3.16
772 869 6.017192 ACTATCCAACCACAAGTTCTCTCTA 58.983 40.000 0.00 0.00 36.18 2.43
982 1087 4.230657 GTGCTTATATAGAGAGCGTGTGG 58.769 47.826 1.49 0.00 39.23 4.17
1005 1110 2.078665 TAGGAGCCCAGCCATTCCC 61.079 63.158 0.00 0.00 0.00 3.97
1252 1363 2.286885 ATCGGTTCCCACCCCCAT 60.287 61.111 0.00 0.00 40.52 4.00
1510 1621 0.033920 TCAACACGCATCTGCTCAGT 59.966 50.000 0.09 0.00 39.32 3.41
1560 1671 1.334243 CCGCGAAGAAGAGGTACCTAG 59.666 57.143 16.29 1.85 0.00 3.02
1567 1678 5.221087 CGAAGAAGAGGTACCTAGCTAAAGG 60.221 48.000 16.29 0.62 42.82 3.11
1569 1680 3.399952 AGAGGTACCTAGCTAAAGGCA 57.600 47.619 16.29 0.00 44.79 4.75
1603 1717 8.752766 TCTTCTTTTATAGAAACACGGTACAG 57.247 34.615 0.00 0.00 42.19 2.74
1611 1725 2.503920 AACACGGTACAGACACAGAC 57.496 50.000 0.00 0.00 0.00 3.51
1712 1826 1.514678 GCAAGGCGTTGGACATGACA 61.515 55.000 19.88 0.00 33.87 3.58
1925 2042 0.112995 AGGCAATGGGAGTCAGCAAA 59.887 50.000 0.00 0.00 0.00 3.68
1964 2081 3.408389 CGAGCTCATCGCCGAATAT 57.592 52.632 15.40 0.00 45.98 1.28
2081 2213 6.127730 CCATCTTGGTGGTAATTAACTCAACC 60.128 42.308 1.50 1.93 34.46 3.77
2097 2230 6.259550 ACTCAACCTATCATTTGAAGTTGC 57.740 37.500 12.80 0.00 35.46 4.17
2283 2428 1.559965 GGTAAGGGAGTCCACACCCC 61.560 65.000 12.30 4.13 46.44 4.95
2411 2556 1.352352 CTCCCACACTTCTCCACCAAT 59.648 52.381 0.00 0.00 0.00 3.16
2421 2566 0.247460 CTCCACCAATGACTGCGAGA 59.753 55.000 0.00 0.00 0.00 4.04
2435 2580 1.121240 GCGAGATCAACGGATACACG 58.879 55.000 12.68 0.00 40.31 4.49
2465 2610 1.265905 GGAACACGGGTCATTGTGAAC 59.734 52.381 0.00 0.00 39.38 3.18
2573 2718 4.611943 CAGAGGTCGACATGTATGGTAAG 58.388 47.826 18.91 0.00 0.00 2.34
2591 2736 0.532862 AGGATATCCGCTTTGTGCCG 60.533 55.000 16.21 0.00 42.08 5.69
2597 2742 2.354539 CGCTTTGTGCCGTTTGGG 60.355 61.111 0.00 0.00 38.78 4.12
2732 2877 1.065551 GGCGCAAAGGTTGATATGTCC 59.934 52.381 10.83 0.00 0.00 4.02
2735 2880 2.872245 CGCAAAGGTTGATATGTCCGAT 59.128 45.455 0.00 0.00 0.00 4.18
2851 3002 1.470051 TACTGTCAGCTACCATCGCA 58.530 50.000 0.00 0.00 0.00 5.10
2852 3003 0.826715 ACTGTCAGCTACCATCGCAT 59.173 50.000 0.00 0.00 0.00 4.73
2863 3014 2.315925 CCATCGCATGGTCTGTTAGT 57.684 50.000 0.00 0.00 45.54 2.24
2864 3015 2.632377 CCATCGCATGGTCTGTTAGTT 58.368 47.619 0.00 0.00 45.54 2.24
2865 3016 2.352651 CCATCGCATGGTCTGTTAGTTG 59.647 50.000 0.00 0.00 45.54 3.16
2866 3017 3.261580 CATCGCATGGTCTGTTAGTTGA 58.738 45.455 0.00 0.00 0.00 3.18
2867 3018 2.959516 TCGCATGGTCTGTTAGTTGAG 58.040 47.619 0.00 0.00 0.00 3.02
2882 3033 8.074613 TGTTAGTTGAGTGCCTATTACTATGT 57.925 34.615 0.00 0.00 0.00 2.29
2911 3062 3.033368 TGTAGTCGTGTTGCATGCTTA 57.967 42.857 20.33 3.93 0.00 3.09
2912 3063 3.394719 TGTAGTCGTGTTGCATGCTTAA 58.605 40.909 20.33 2.28 0.00 1.85
2913 3064 4.000325 TGTAGTCGTGTTGCATGCTTAAT 59.000 39.130 20.33 0.00 0.00 1.40
2914 3065 5.172205 TGTAGTCGTGTTGCATGCTTAATA 58.828 37.500 20.33 0.74 0.00 0.98
2915 3066 4.864916 AGTCGTGTTGCATGCTTAATAG 57.135 40.909 20.33 6.29 0.00 1.73
2941 3092 1.873591 GGAGTTTGTTGCACACGAGAT 59.126 47.619 0.00 0.00 0.00 2.75
2950 3101 0.737715 GCACACGAGATGGACCTGTC 60.738 60.000 0.00 0.00 0.00 3.51
2959 3110 0.032117 ATGGACCTGTCGGATCCTCA 60.032 55.000 10.75 8.16 33.92 3.86
2961 3112 1.123928 GGACCTGTCGGATCCTCAAT 58.876 55.000 10.75 0.62 31.60 2.57
2974 3125 5.527214 CGGATCCTCAATAAATGTAACAGCA 59.473 40.000 10.75 0.00 0.00 4.41
2978 3129 9.241317 GATCCTCAATAAATGTAACAGCAAATG 57.759 33.333 0.00 0.00 0.00 2.32
2997 3148 9.807649 AGCAAATGATGAATAAAAGTATGGTTC 57.192 29.630 0.00 0.00 0.00 3.62
3032 3280 4.701765 AGATCAAAGATCATGGGTTCTCG 58.298 43.478 9.43 0.00 0.00 4.04
3033 3281 2.632377 TCAAAGATCATGGGTTCTCGC 58.368 47.619 0.00 0.00 0.00 5.03
3036 3284 0.467384 AGATCATGGGTTCTCGCCTG 59.533 55.000 0.00 0.00 0.00 4.85
3049 3300 0.898326 TCGCCTGACCTTACTCTGCA 60.898 55.000 0.00 0.00 0.00 4.41
3050 3301 0.459237 CGCCTGACCTTACTCTGCAG 60.459 60.000 7.63 7.63 0.00 4.41
3057 3308 3.327757 TGACCTTACTCTGCAGTTTGGAT 59.672 43.478 14.67 0.00 33.62 3.41
3058 3309 3.679389 ACCTTACTCTGCAGTTTGGATG 58.321 45.455 14.67 4.71 33.62 3.51
3059 3310 2.421424 CCTTACTCTGCAGTTTGGATGC 59.579 50.000 14.67 0.00 44.11 3.91
3060 3311 3.341823 CTTACTCTGCAGTTTGGATGCT 58.658 45.455 14.67 0.00 44.17 3.79
3124 3385 7.459795 AAACCTCTTCTCTTGGAATTTCATC 57.540 36.000 0.00 0.00 33.01 2.92
3125 3386 6.131972 ACCTCTTCTCTTGGAATTTCATCA 57.868 37.500 0.00 0.00 33.01 3.07
3126 3387 6.729428 ACCTCTTCTCTTGGAATTTCATCAT 58.271 36.000 0.00 0.00 33.01 2.45
3127 3388 7.180663 ACCTCTTCTCTTGGAATTTCATCATT 58.819 34.615 0.00 0.00 33.01 2.57
3128 3389 7.122353 ACCTCTTCTCTTGGAATTTCATCATTG 59.878 37.037 0.00 0.00 33.01 2.82
3129 3390 6.860080 TCTTCTCTTGGAATTTCATCATTGC 58.140 36.000 0.00 0.00 33.01 3.56
3130 3391 6.662234 TCTTCTCTTGGAATTTCATCATTGCT 59.338 34.615 0.00 0.00 33.01 3.91
3131 3392 6.203808 TCTCTTGGAATTTCATCATTGCTG 57.796 37.500 0.00 0.00 0.00 4.41
3132 3393 5.947566 TCTCTTGGAATTTCATCATTGCTGA 59.052 36.000 0.00 0.00 35.41 4.26
3133 3394 5.957798 TCTTGGAATTTCATCATTGCTGAC 58.042 37.500 0.00 0.00 33.22 3.51
3134 3395 4.724074 TGGAATTTCATCATTGCTGACC 57.276 40.909 0.00 0.00 33.22 4.02
3135 3396 3.448301 TGGAATTTCATCATTGCTGACCC 59.552 43.478 0.00 0.00 33.22 4.46
3136 3397 3.448301 GGAATTTCATCATTGCTGACCCA 59.552 43.478 0.00 0.00 33.22 4.51
3137 3398 4.427312 GAATTTCATCATTGCTGACCCAC 58.573 43.478 0.00 0.00 33.22 4.61
3138 3399 1.838112 TTCATCATTGCTGACCCACC 58.162 50.000 0.00 0.00 33.22 4.61
3139 3400 0.994247 TCATCATTGCTGACCCACCT 59.006 50.000 0.00 0.00 33.22 4.00
3140 3401 1.065199 TCATCATTGCTGACCCACCTC 60.065 52.381 0.00 0.00 33.22 3.85
3141 3402 0.994247 ATCATTGCTGACCCACCTCA 59.006 50.000 0.00 0.00 33.22 3.86
3142 3403 0.770499 TCATTGCTGACCCACCTCAA 59.230 50.000 0.00 0.00 0.00 3.02
3143 3404 1.171308 CATTGCTGACCCACCTCAAG 58.829 55.000 0.00 0.00 0.00 3.02
3144 3405 0.773644 ATTGCTGACCCACCTCAAGT 59.226 50.000 0.00 0.00 0.00 3.16
3145 3406 0.108585 TTGCTGACCCACCTCAAGTC 59.891 55.000 0.00 0.00 0.00 3.01
3146 3407 1.374758 GCTGACCCACCTCAAGTCG 60.375 63.158 0.00 0.00 33.09 4.18
3147 3408 1.374758 CTGACCCACCTCAAGTCGC 60.375 63.158 0.00 0.00 33.09 5.19
3148 3409 1.821061 CTGACCCACCTCAAGTCGCT 61.821 60.000 0.00 0.00 33.09 4.93
3149 3410 1.374758 GACCCACCTCAAGTCGCTG 60.375 63.158 0.00 0.00 0.00 5.18
3165 3434 4.459685 AGTCGCTGGCGTTAGAGATAATAT 59.540 41.667 14.55 0.00 40.74 1.28
3183 3452 0.395862 ATCGTCATCGTCCTCCCACT 60.396 55.000 0.00 0.00 38.33 4.00
3184 3453 1.139734 CGTCATCGTCCTCCCACTG 59.860 63.158 0.00 0.00 0.00 3.66
3192 3461 2.235402 TCGTCCTCCCACTGGTATTTTC 59.765 50.000 0.00 0.00 0.00 2.29
3196 3465 4.226620 GTCCTCCCACTGGTATTTTCCTAA 59.773 45.833 0.00 0.00 0.00 2.69
3200 3469 3.526019 CCCACTGGTATTTTCCTAAGGGA 59.474 47.826 0.00 0.00 40.36 4.20
3201 3470 4.524053 CCACTGGTATTTTCCTAAGGGAC 58.476 47.826 0.00 0.00 42.05 4.46
3272 3542 5.982356 TGAAAAATCAACATTCCAACCACA 58.018 33.333 0.00 0.00 0.00 4.17
3310 3594 7.552050 AGATATCTCTCTACAAAATGAGGGG 57.448 40.000 0.00 0.00 32.02 4.79
3311 3595 6.500049 AGATATCTCTCTACAAAATGAGGGGG 59.500 42.308 0.00 0.00 32.02 5.40
3314 3598 4.849810 TCTCTCTACAAAATGAGGGGGAAA 59.150 41.667 0.00 0.00 32.02 3.13
3411 3765 5.999205 TTCAAGGGAAAATGCATGTATGT 57.001 34.783 0.00 0.00 0.00 2.29
3417 3771 3.613737 GGAAAATGCATGTATGTGTGTGC 59.386 43.478 0.00 0.00 38.05 4.57
3418 3772 2.945447 AATGCATGTATGTGTGTGCC 57.055 45.000 0.00 0.00 36.79 5.01
3493 3847 4.274978 AGAAAGGGTGAGAGCTCTACTAC 58.725 47.826 18.25 15.54 0.00 2.73
3544 3899 8.594881 ATTGCACTATTACATCAACTAGTAGC 57.405 34.615 0.00 0.00 0.00 3.58
3545 3900 7.107639 TGCACTATTACATCAACTAGTAGCA 57.892 36.000 0.00 0.00 31.79 3.49
3546 3901 7.552459 TGCACTATTACATCAACTAGTAGCAA 58.448 34.615 0.00 0.00 31.56 3.91
3547 3902 8.204160 TGCACTATTACATCAACTAGTAGCAAT 58.796 33.333 0.00 0.00 31.56 3.56
3548 3903 9.046296 GCACTATTACATCAACTAGTAGCAATT 57.954 33.333 0.00 0.00 0.00 2.32
3602 3957 1.897473 TGGTCCTCATCATCATGGGT 58.103 50.000 0.00 0.00 0.00 4.51
3603 3958 1.491754 TGGTCCTCATCATCATGGGTG 59.508 52.381 0.00 0.00 0.00 4.61
3687 4043 5.983333 ATTGGACCCTTAGATGTCTTCAT 57.017 39.130 0.00 0.00 36.95 2.57
3691 4047 8.742125 TTGGACCCTTAGATGTCTTCATATAT 57.258 34.615 0.00 0.00 34.06 0.86
3769 4125 1.707427 AGAAGGCATCAAAGGTGACCT 59.293 47.619 0.00 0.00 36.31 3.85
3783 4139 4.024670 AGGTGACCTCATACCTTAGTGAC 58.975 47.826 0.00 0.00 44.72 3.67
3791 4147 6.151144 ACCTCATACCTTAGTGACAAATTTGC 59.849 38.462 18.12 11.21 0.00 3.68
3795 4151 4.134563 ACCTTAGTGACAAATTTGCGAGT 58.865 39.130 18.12 9.84 0.00 4.18
3796 4152 4.213482 ACCTTAGTGACAAATTTGCGAGTC 59.787 41.667 18.12 8.63 0.00 3.36
3797 4153 4.213270 CCTTAGTGACAAATTTGCGAGTCA 59.787 41.667 18.12 11.11 38.56 3.41
3798 4154 5.106555 CCTTAGTGACAAATTTGCGAGTCAT 60.107 40.000 18.12 7.19 42.28 3.06
3799 4155 4.151258 AGTGACAAATTTGCGAGTCATG 57.849 40.909 18.12 0.00 42.28 3.07
3800 4156 3.565482 AGTGACAAATTTGCGAGTCATGT 59.435 39.130 18.12 3.88 42.28 3.21
3801 4157 3.665409 GTGACAAATTTGCGAGTCATGTG 59.335 43.478 18.12 0.00 42.28 3.21
3802 4158 3.563390 TGACAAATTTGCGAGTCATGTGA 59.437 39.130 18.12 0.00 36.20 3.58
3803 4159 3.888934 ACAAATTTGCGAGTCATGTGAC 58.111 40.909 18.12 5.01 45.08 3.67
3815 4171 4.282950 GTCATGTGACTGCCATACAATG 57.717 45.455 5.91 0.00 41.65 2.82
3816 4172 3.065786 GTCATGTGACTGCCATACAATGG 59.934 47.826 5.91 1.37 45.94 3.16
3817 4173 5.402562 GTCATGTGACTGCCATACAATGGT 61.403 45.833 7.72 0.00 45.47 3.55
3818 4174 7.383629 GTCATGTGACTGCCATACAATGGTG 62.384 48.000 7.72 4.20 45.47 4.17
3827 4183 3.554934 CCATACAATGGTGTGCATAGGT 58.445 45.455 0.00 0.00 45.54 3.08
3828 4184 4.713553 CCATACAATGGTGTGCATAGGTA 58.286 43.478 0.00 0.00 45.54 3.08
3829 4185 4.515191 CCATACAATGGTGTGCATAGGTAC 59.485 45.833 0.00 0.00 45.54 3.34
3830 4186 3.712016 ACAATGGTGTGCATAGGTACA 57.288 42.857 0.00 0.00 36.31 2.90
3831 4187 4.027674 ACAATGGTGTGCATAGGTACAA 57.972 40.909 0.00 0.00 41.41 2.41
3832 4188 4.009675 ACAATGGTGTGCATAGGTACAAG 58.990 43.478 0.00 0.00 41.41 3.16
3833 4189 2.107950 TGGTGTGCATAGGTACAAGC 57.892 50.000 0.00 0.00 41.41 4.01
3834 4190 1.628340 TGGTGTGCATAGGTACAAGCT 59.372 47.619 0.00 0.00 41.41 3.74
3835 4191 2.835156 TGGTGTGCATAGGTACAAGCTA 59.165 45.455 0.00 0.00 41.41 3.32
3836 4192 3.118775 TGGTGTGCATAGGTACAAGCTAG 60.119 47.826 0.00 0.00 41.41 3.42
3837 4193 3.132289 GGTGTGCATAGGTACAAGCTAGA 59.868 47.826 0.00 0.00 41.41 2.43
3838 4194 4.363999 GTGTGCATAGGTACAAGCTAGAG 58.636 47.826 0.00 0.00 41.41 2.43
3839 4195 3.181475 TGTGCATAGGTACAAGCTAGAGC 60.181 47.826 0.00 0.00 36.65 4.09
3840 4196 3.031013 TGCATAGGTACAAGCTAGAGCA 58.969 45.455 4.01 10.23 45.16 4.26
3841 4197 3.068732 TGCATAGGTACAAGCTAGAGCAG 59.931 47.826 4.01 0.00 45.16 4.24
3842 4198 3.319405 GCATAGGTACAAGCTAGAGCAGA 59.681 47.826 4.01 0.00 45.16 4.26
3843 4199 4.202161 GCATAGGTACAAGCTAGAGCAGAA 60.202 45.833 4.01 0.00 45.16 3.02
3844 4200 5.527951 CATAGGTACAAGCTAGAGCAGAAG 58.472 45.833 4.01 0.00 45.16 2.85
3845 4201 3.702792 AGGTACAAGCTAGAGCAGAAGA 58.297 45.455 4.01 0.00 45.16 2.87
3846 4202 4.090090 AGGTACAAGCTAGAGCAGAAGAA 58.910 43.478 4.01 0.00 45.16 2.52
3847 4203 4.159506 AGGTACAAGCTAGAGCAGAAGAAG 59.840 45.833 4.01 0.00 45.16 2.85
3848 4204 3.608316 ACAAGCTAGAGCAGAAGAAGG 57.392 47.619 4.01 0.00 45.16 3.46
3849 4205 2.903135 ACAAGCTAGAGCAGAAGAAGGT 59.097 45.455 4.01 0.00 45.16 3.50
3850 4206 3.260740 CAAGCTAGAGCAGAAGAAGGTG 58.739 50.000 4.01 0.00 45.16 4.00
3851 4207 2.813907 AGCTAGAGCAGAAGAAGGTGA 58.186 47.619 4.01 0.00 45.16 4.02
3852 4208 3.169099 AGCTAGAGCAGAAGAAGGTGAA 58.831 45.455 4.01 0.00 45.16 3.18
3853 4209 3.774216 AGCTAGAGCAGAAGAAGGTGAAT 59.226 43.478 4.01 0.00 45.16 2.57
3854 4210 3.870419 GCTAGAGCAGAAGAAGGTGAATG 59.130 47.826 0.00 0.00 41.59 2.67
3855 4211 4.622695 GCTAGAGCAGAAGAAGGTGAATGT 60.623 45.833 0.00 0.00 41.59 2.71
3856 4212 4.363991 AGAGCAGAAGAAGGTGAATGTT 57.636 40.909 0.00 0.00 0.00 2.71
3857 4213 4.070716 AGAGCAGAAGAAGGTGAATGTTG 58.929 43.478 0.00 0.00 0.00 3.33
3858 4214 3.817647 GAGCAGAAGAAGGTGAATGTTGT 59.182 43.478 0.00 0.00 0.00 3.32
3859 4215 3.567164 AGCAGAAGAAGGTGAATGTTGTG 59.433 43.478 0.00 0.00 0.00 3.33
3860 4216 3.565482 GCAGAAGAAGGTGAATGTTGTGA 59.435 43.478 0.00 0.00 0.00 3.58
3861 4217 4.036734 GCAGAAGAAGGTGAATGTTGTGAA 59.963 41.667 0.00 0.00 0.00 3.18
3862 4218 5.514279 CAGAAGAAGGTGAATGTTGTGAAC 58.486 41.667 0.00 0.00 0.00 3.18
3863 4219 4.580580 AGAAGAAGGTGAATGTTGTGAACC 59.419 41.667 0.00 0.00 0.00 3.62
3864 4220 3.897239 AGAAGGTGAATGTTGTGAACCA 58.103 40.909 0.00 0.00 33.13 3.67
3865 4221 4.473444 AGAAGGTGAATGTTGTGAACCAT 58.527 39.130 0.00 0.00 33.13 3.55
3866 4222 4.520492 AGAAGGTGAATGTTGTGAACCATC 59.480 41.667 0.00 0.00 33.13 3.51
3867 4223 4.104383 AGGTGAATGTTGTGAACCATCT 57.896 40.909 0.00 0.00 33.13 2.90
3868 4224 3.822735 AGGTGAATGTTGTGAACCATCTG 59.177 43.478 0.00 0.00 33.13 2.90
3869 4225 3.569701 GGTGAATGTTGTGAACCATCTGT 59.430 43.478 0.00 0.00 0.00 3.41
3870 4226 4.539870 GTGAATGTTGTGAACCATCTGTG 58.460 43.478 0.00 0.00 0.00 3.66
3871 4227 4.275689 GTGAATGTTGTGAACCATCTGTGA 59.724 41.667 0.00 0.00 0.00 3.58
3872 4228 4.275689 TGAATGTTGTGAACCATCTGTGAC 59.724 41.667 0.00 0.00 0.00 3.67
3873 4229 3.558931 TGTTGTGAACCATCTGTGACT 57.441 42.857 0.00 0.00 0.00 3.41
3874 4230 4.681074 TGTTGTGAACCATCTGTGACTA 57.319 40.909 0.00 0.00 0.00 2.59
3875 4231 5.029807 TGTTGTGAACCATCTGTGACTAA 57.970 39.130 0.00 0.00 0.00 2.24
3876 4232 5.056480 TGTTGTGAACCATCTGTGACTAAG 58.944 41.667 0.00 0.00 0.00 2.18
3877 4233 4.271696 TGTGAACCATCTGTGACTAAGG 57.728 45.455 0.00 0.00 0.00 2.69
3878 4234 3.003480 GTGAACCATCTGTGACTAAGGC 58.997 50.000 0.00 0.00 0.00 4.35
3879 4235 2.637382 TGAACCATCTGTGACTAAGGCA 59.363 45.455 0.00 0.00 0.00 4.75
3880 4236 3.264193 TGAACCATCTGTGACTAAGGCAT 59.736 43.478 0.00 0.00 0.00 4.40
3881 4237 4.263462 TGAACCATCTGTGACTAAGGCATT 60.263 41.667 0.00 0.00 0.00 3.56
3882 4238 5.045942 TGAACCATCTGTGACTAAGGCATTA 60.046 40.000 0.00 0.00 0.00 1.90
3883 4239 5.028549 ACCATCTGTGACTAAGGCATTAG 57.971 43.478 16.24 16.24 43.50 1.73
3884 4240 4.141620 ACCATCTGTGACTAAGGCATTAGG 60.142 45.833 21.17 4.62 42.38 2.69
3885 4241 4.141620 CCATCTGTGACTAAGGCATTAGGT 60.142 45.833 21.17 7.84 42.38 3.08
3886 4242 4.471904 TCTGTGACTAAGGCATTAGGTG 57.528 45.455 21.17 7.26 42.38 4.00
3887 4243 3.838317 TCTGTGACTAAGGCATTAGGTGT 59.162 43.478 21.17 2.20 42.38 4.16
3888 4244 5.020795 TCTGTGACTAAGGCATTAGGTGTA 58.979 41.667 21.17 5.40 42.38 2.90
3889 4245 5.127194 TCTGTGACTAAGGCATTAGGTGTAG 59.873 44.000 21.17 13.58 42.38 2.74
3890 4246 4.775780 TGTGACTAAGGCATTAGGTGTAGT 59.224 41.667 21.17 2.31 42.38 2.73
3891 4247 5.247564 TGTGACTAAGGCATTAGGTGTAGTT 59.752 40.000 21.17 0.00 42.38 2.24
3892 4248 6.171213 GTGACTAAGGCATTAGGTGTAGTTT 58.829 40.000 21.17 0.00 42.38 2.66
3893 4249 6.313164 GTGACTAAGGCATTAGGTGTAGTTTC 59.687 42.308 21.17 8.30 42.38 2.78
3894 4250 6.212791 TGACTAAGGCATTAGGTGTAGTTTCT 59.787 38.462 21.17 0.00 42.38 2.52
3895 4251 7.017319 ACTAAGGCATTAGGTGTAGTTTCTT 57.983 36.000 21.17 0.00 42.38 2.52
3896 4252 8.142485 ACTAAGGCATTAGGTGTAGTTTCTTA 57.858 34.615 21.17 0.00 42.38 2.10
3897 4253 8.258708 ACTAAGGCATTAGGTGTAGTTTCTTAG 58.741 37.037 21.17 8.07 42.38 2.18
3898 4254 5.429130 AGGCATTAGGTGTAGTTTCTTAGC 58.571 41.667 0.00 0.00 0.00 3.09
3899 4255 5.045869 AGGCATTAGGTGTAGTTTCTTAGCA 60.046 40.000 0.00 0.00 0.00 3.49
3900 4256 5.823045 GGCATTAGGTGTAGTTTCTTAGCAT 59.177 40.000 0.00 0.00 0.00 3.79
3901 4257 6.318900 GGCATTAGGTGTAGTTTCTTAGCATT 59.681 38.462 0.00 0.00 0.00 3.56
3902 4258 7.497909 GGCATTAGGTGTAGTTTCTTAGCATTA 59.502 37.037 0.00 0.00 0.00 1.90
3903 4259 8.336080 GCATTAGGTGTAGTTTCTTAGCATTAC 58.664 37.037 0.00 0.00 0.00 1.89
3904 4260 9.378551 CATTAGGTGTAGTTTCTTAGCATTACA 57.621 33.333 0.00 0.00 0.00 2.41
3908 4264 9.547753 AGGTGTAGTTTCTTAGCATTACATATG 57.452 33.333 0.00 0.00 0.00 1.78
3909 4265 8.774586 GGTGTAGTTTCTTAGCATTACATATGG 58.225 37.037 7.80 0.00 0.00 2.74
3910 4266 9.542462 GTGTAGTTTCTTAGCATTACATATGGA 57.458 33.333 7.80 0.00 0.00 3.41
3913 4269 8.103948 AGTTTCTTAGCATTACATATGGATGC 57.896 34.615 26.34 26.34 44.89 3.91
3914 4270 7.720957 AGTTTCTTAGCATTACATATGGATGCA 59.279 33.333 31.01 20.94 46.48 3.96
3915 4271 8.352201 GTTTCTTAGCATTACATATGGATGCAA 58.648 33.333 31.01 24.16 46.48 4.08
3916 4272 8.640063 TTCTTAGCATTACATATGGATGCAAT 57.360 30.769 31.01 21.10 46.48 3.56
3917 4273 8.640063 TCTTAGCATTACATATGGATGCAATT 57.360 30.769 31.01 20.63 46.48 2.32
3918 4274 9.081204 TCTTAGCATTACATATGGATGCAATTT 57.919 29.630 31.01 20.39 46.48 1.82
3919 4275 9.701098 CTTAGCATTACATATGGATGCAATTTT 57.299 29.630 31.01 20.15 46.48 1.82
3920 4276 9.695526 TTAGCATTACATATGGATGCAATTTTC 57.304 29.630 31.01 12.98 46.48 2.29
3921 4277 7.959175 AGCATTACATATGGATGCAATTTTCT 58.041 30.769 31.01 16.47 46.48 2.52
3922 4278 8.426489 AGCATTACATATGGATGCAATTTTCTT 58.574 29.630 31.01 15.98 46.48 2.52
3923 4279 8.492748 GCATTACATATGGATGCAATTTTCTTG 58.507 33.333 27.64 4.56 44.18 3.02
3924 4280 9.537192 CATTACATATGGATGCAATTTTCTTGT 57.463 29.630 7.80 0.00 36.43 3.16
3937 4293 9.995003 TGCAATTTTCTTGTTAATTATTCCAGT 57.005 25.926 0.00 0.00 0.00 4.00
3945 4301 8.736244 TCTTGTTAATTATTCCAGTTAGTTGGC 58.264 33.333 0.00 0.00 38.16 4.52
3946 4302 8.410673 TTGTTAATTATTCCAGTTAGTTGGCA 57.589 30.769 0.00 0.00 38.16 4.92
3947 4303 8.410673 TGTTAATTATTCCAGTTAGTTGGCAA 57.589 30.769 0.00 0.00 38.16 4.52
3948 4304 9.030452 TGTTAATTATTCCAGTTAGTTGGCAAT 57.970 29.630 1.92 0.00 38.16 3.56
3949 4305 9.301153 GTTAATTATTCCAGTTAGTTGGCAATG 57.699 33.333 1.92 0.00 38.16 2.82
3950 4306 5.913137 TTATTCCAGTTAGTTGGCAATGG 57.087 39.130 1.92 6.85 38.16 3.16
3951 4307 3.517296 TTCCAGTTAGTTGGCAATGGA 57.483 42.857 13.99 13.99 38.16 3.41
3952 4308 2.790433 TCCAGTTAGTTGGCAATGGAC 58.210 47.619 13.99 8.19 38.16 4.02
3953 4309 2.107378 TCCAGTTAGTTGGCAATGGACA 59.893 45.455 13.99 0.00 38.16 4.02
3954 4310 2.890311 CCAGTTAGTTGGCAATGGACAA 59.110 45.455 10.60 0.00 40.58 3.18
3955 4311 3.511146 CCAGTTAGTTGGCAATGGACAAT 59.489 43.478 10.60 0.00 45.61 2.71
3956 4312 4.704540 CCAGTTAGTTGGCAATGGACAATA 59.295 41.667 10.60 0.00 45.61 1.90
3957 4313 5.163622 CCAGTTAGTTGGCAATGGACAATAG 60.164 44.000 10.60 0.09 45.61 1.73
3958 4314 5.415701 CAGTTAGTTGGCAATGGACAATAGT 59.584 40.000 1.92 0.00 45.61 2.12
3959 4315 5.648092 AGTTAGTTGGCAATGGACAATAGTC 59.352 40.000 1.92 0.00 45.61 2.59
3960 4316 4.032960 AGTTGGCAATGGACAATAGTCA 57.967 40.909 1.92 0.00 45.61 3.41
3961 4317 4.603131 AGTTGGCAATGGACAATAGTCAT 58.397 39.130 1.92 0.00 45.61 3.06
3962 4318 5.754782 AGTTGGCAATGGACAATAGTCATA 58.245 37.500 1.92 0.00 45.61 2.15
3963 4319 6.367983 AGTTGGCAATGGACAATAGTCATAT 58.632 36.000 1.92 0.00 45.61 1.78
3964 4320 6.835488 AGTTGGCAATGGACAATAGTCATATT 59.165 34.615 1.92 0.00 45.61 1.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 2.091665 ACTTCTTTGCCATATGAGGGGG 60.092 50.000 3.65 0.00 0.00 5.40
58 59 3.217626 GACTTCTTTGCCATATGAGGGG 58.782 50.000 3.65 0.00 0.00 4.79
59 60 3.889815 TGACTTCTTTGCCATATGAGGG 58.110 45.455 3.65 0.00 0.00 4.30
60 61 4.518211 GGATGACTTCTTTGCCATATGAGG 59.482 45.833 3.65 0.00 0.00 3.86
61 62 5.128205 TGGATGACTTCTTTGCCATATGAG 58.872 41.667 3.65 0.00 0.00 2.90
62 63 5.114764 TGGATGACTTCTTTGCCATATGA 57.885 39.130 3.65 0.00 0.00 2.15
63 64 5.533528 TCATGGATGACTTCTTTGCCATATG 59.466 40.000 0.00 0.00 34.57 1.78
64 65 5.698104 TCATGGATGACTTCTTTGCCATAT 58.302 37.500 0.00 0.00 34.57 1.78
65 66 5.114764 TCATGGATGACTTCTTTGCCATA 57.885 39.130 0.00 0.00 34.57 2.74
66 67 3.972133 TCATGGATGACTTCTTTGCCAT 58.028 40.909 0.00 0.00 36.62 4.40
67 68 3.438216 TCATGGATGACTTCTTTGCCA 57.562 42.857 0.00 0.00 0.00 4.92
68 69 3.003068 CGATCATGGATGACTTCTTTGCC 59.997 47.826 0.00 0.00 40.03 4.52
69 70 3.547613 GCGATCATGGATGACTTCTTTGC 60.548 47.826 0.00 0.00 40.03 3.68
79 80 2.785713 TTGCATTGCGATCATGGATG 57.214 45.000 3.84 0.00 0.00 3.51
117 118 5.569355 TGACCTCATGTTGAATGGTGTATT 58.431 37.500 0.00 0.00 26.66 1.89
153 154 0.375454 GTTTATGTGTATGCGCCGCA 59.625 50.000 16.69 16.69 44.86 5.69
210 211 4.386867 TGTCCGTATCAAAGACCTCATC 57.613 45.455 0.00 0.00 0.00 2.92
224 225 1.617804 CCCCTAGTCTGGTTGTCCGTA 60.618 57.143 0.00 0.00 36.30 4.02
243 244 6.992063 ATACATCCATCGATCATAAAAGCC 57.008 37.500 0.00 0.00 0.00 4.35
251 252 8.974408 CGTAAAGTTTTATACATCCATCGATCA 58.026 33.333 0.00 0.00 0.00 2.92
274 275 3.132160 TCAAAAGCAACGGATGTTCGTA 58.868 40.909 0.00 0.00 43.07 3.43
371 372 2.355513 CCCTTGTCCAGTCTCATTCCTG 60.356 54.545 0.00 0.00 0.00 3.86
397 400 4.873827 GCGGATCACTTAAGTCACCAAATA 59.126 41.667 4.77 0.00 0.00 1.40
409 412 3.254166 GTCCCTATAACGCGGATCACTTA 59.746 47.826 12.47 0.00 0.00 2.24
508 564 6.050432 CACATGCGTTAATAGGGGTAGTTAA 58.950 40.000 0.00 0.00 0.00 2.01
509 565 5.603596 CACATGCGTTAATAGGGGTAGTTA 58.396 41.667 0.00 0.00 0.00 2.24
510 566 4.448210 CACATGCGTTAATAGGGGTAGTT 58.552 43.478 0.00 0.00 0.00 2.24
513 569 2.170817 TGCACATGCGTTAATAGGGGTA 59.829 45.455 0.00 0.00 45.83 3.69
514 570 1.065053 TGCACATGCGTTAATAGGGGT 60.065 47.619 0.00 0.00 45.83 4.95
516 572 2.013400 TGTGCACATGCGTTAATAGGG 58.987 47.619 17.42 0.00 45.83 3.53
524 618 2.394930 TAAGGTATGTGCACATGCGT 57.605 45.000 36.72 32.96 45.83 5.24
529 623 8.268605 TGTTTATAAGGATAAGGTATGTGCACA 58.731 33.333 24.08 24.08 0.00 4.57
531 625 7.717875 GGTGTTTATAAGGATAAGGTATGTGCA 59.282 37.037 0.00 0.00 0.00 4.57
547 641 6.497259 ACTCTGTCTCTTGGAGGTGTTTATAA 59.503 38.462 0.00 0.00 0.00 0.98
551 645 3.041946 ACTCTGTCTCTTGGAGGTGTTT 58.958 45.455 0.00 0.00 0.00 2.83
574 668 4.009675 TGTCAACCTCAAGATAATGTGCC 58.990 43.478 0.00 0.00 0.00 5.01
599 693 2.677003 CGAAGGCGTTTGTGGCGAT 61.677 57.895 0.00 0.00 39.82 4.58
645 739 1.472480 GCCTTTTGGTGATGTGCGTAT 59.528 47.619 0.00 0.00 42.99 3.06
646 740 0.878416 GCCTTTTGGTGATGTGCGTA 59.122 50.000 0.00 0.00 42.99 4.42
732 826 7.147707 GGTTGGATAGTTAGGACAGTTGTATCT 60.148 40.741 0.00 0.00 0.00 1.98
741 835 4.595781 ACTTGTGGTTGGATAGTTAGGACA 59.404 41.667 0.00 0.00 0.00 4.02
837 934 4.917385 ACAAGTGGAATATGTTACCAGCA 58.083 39.130 0.00 0.00 34.21 4.41
982 1087 1.341156 ATGGCTGGGCTCCTACTCAC 61.341 60.000 0.00 0.00 0.00 3.51
1063 1168 2.438254 GATGTGCCATGGCCGACA 60.438 61.111 33.44 29.75 41.09 4.35
1213 1324 1.407656 GGTGGAGGTGGCCGATGATA 61.408 60.000 0.00 0.00 0.00 2.15
1240 1351 1.928567 GGAGACATGGGGGTGGGAA 60.929 63.158 0.00 0.00 0.00 3.97
1252 1363 2.282958 AGGTCGCGGAAGGAGACA 60.283 61.111 6.13 0.00 46.06 3.41
1510 1621 3.055819 GCTTGGAGTAGACCATCTTGACA 60.056 47.826 0.00 0.00 39.82 3.58
1603 1717 0.030773 TCAGTGTGAGCGTCTGTGTC 59.969 55.000 0.00 0.00 0.00 3.67
1712 1826 3.396822 ATACCCGCCCAGGAGCTCT 62.397 63.158 14.64 0.00 45.00 4.09
1925 2042 3.293337 GTTAAACAGGTTGTCCCACCTT 58.707 45.455 0.00 0.00 45.76 3.50
1964 2081 3.071479 GTTATCTTCCTTGCCGTGTTCA 58.929 45.455 0.00 0.00 0.00 3.18
2081 2213 5.001237 TGCATGGCAACTTCAAATGATAG 57.999 39.130 0.00 0.00 34.76 2.08
2131 2273 8.150945 ACAAGATCACACAAATCTTAGTACTGT 58.849 33.333 5.39 0.00 40.61 3.55
2283 2428 2.556287 GTCCAGCTTTTCGCCGTG 59.444 61.111 0.00 0.00 40.39 4.94
2411 2556 0.817654 ATCCGTTGATCTCGCAGTCA 59.182 50.000 0.00 0.00 0.00 3.41
2421 2566 2.545113 CGGGAATCGTGTATCCGTTGAT 60.545 50.000 0.00 0.00 36.54 2.57
2453 2598 0.240945 CCCAAGCGTTCACAATGACC 59.759 55.000 0.00 0.00 0.00 4.02
2621 2766 3.688136 GCGATCGCGAAAGTAGCA 58.312 55.556 26.12 0.00 40.82 3.49
2732 2877 0.652592 GCGTCATCCCAAACTGATCG 59.347 55.000 0.00 0.00 0.00 3.69
2735 2880 1.808411 GAAGCGTCATCCCAAACTGA 58.192 50.000 0.00 0.00 0.00 3.41
2802 2947 2.018515 ACAAACACAAACCTACGGTGG 58.981 47.619 0.00 0.00 35.34 4.61
2809 2954 4.460263 TCAGCTGATACAAACACAAACCT 58.540 39.130 13.74 0.00 0.00 3.50
2834 2985 1.215244 CATGCGATGGTAGCTGACAG 58.785 55.000 0.00 0.00 35.28 3.51
2835 2986 0.179076 CCATGCGATGGTAGCTGACA 60.179 55.000 0.00 0.00 45.54 3.58
2836 2987 2.609825 CCATGCGATGGTAGCTGAC 58.390 57.895 0.00 0.00 45.54 3.51
2848 2999 2.413112 CACTCAACTAACAGACCATGCG 59.587 50.000 0.00 0.00 0.00 4.73
2851 3002 2.639839 AGGCACTCAACTAACAGACCAT 59.360 45.455 0.00 0.00 0.00 3.55
2852 3003 2.047061 AGGCACTCAACTAACAGACCA 58.953 47.619 0.00 0.00 0.00 4.02
2854 3005 6.631962 AGTAATAGGCACTCAACTAACAGAC 58.368 40.000 0.00 0.00 41.75 3.51
2856 3007 8.198109 ACATAGTAATAGGCACTCAACTAACAG 58.802 37.037 0.00 0.00 41.75 3.16
2863 3014 5.661312 AGGTGACATAGTAATAGGCACTCAA 59.339 40.000 0.00 0.00 41.75 3.02
2864 3015 5.208890 AGGTGACATAGTAATAGGCACTCA 58.791 41.667 0.00 0.00 41.75 3.41
2865 3016 5.793030 AGGTGACATAGTAATAGGCACTC 57.207 43.478 0.00 0.00 41.75 3.51
2866 3017 7.670605 TTAAGGTGACATAGTAATAGGCACT 57.329 36.000 0.00 0.00 46.37 4.40
2867 3018 7.931948 ACATTAAGGTGACATAGTAATAGGCAC 59.068 37.037 0.00 0.00 0.00 5.01
2882 3033 3.991773 GCAACACGACTACATTAAGGTGA 59.008 43.478 2.37 0.00 0.00 4.02
2911 3062 2.711542 CAACAAACTCCCGGAGCTATT 58.288 47.619 14.86 4.73 32.04 1.73
2912 3063 1.679032 GCAACAAACTCCCGGAGCTAT 60.679 52.381 14.86 0.00 32.04 2.97
2913 3064 0.321298 GCAACAAACTCCCGGAGCTA 60.321 55.000 14.86 0.00 32.04 3.32
2914 3065 1.600916 GCAACAAACTCCCGGAGCT 60.601 57.895 14.86 0.00 32.04 4.09
2915 3066 1.896660 TGCAACAAACTCCCGGAGC 60.897 57.895 14.86 0.00 32.04 4.70
2916 3067 1.949257 GTGCAACAAACTCCCGGAG 59.051 57.895 13.31 13.31 36.32 4.63
2917 3068 4.150994 GTGCAACAAACTCCCGGA 57.849 55.556 0.73 0.00 36.32 5.14
2941 3092 0.252057 TTGAGGATCCGACAGGTCCA 60.252 55.000 5.98 0.00 39.00 4.02
2950 3101 5.527214 TGCTGTTACATTTATTGAGGATCCG 59.473 40.000 5.98 0.00 0.00 4.18
3002 3153 7.675062 ACCCATGATCTTTGATCTACTGATAC 58.325 38.462 8.71 0.00 32.19 2.24
3003 3154 7.862274 ACCCATGATCTTTGATCTACTGATA 57.138 36.000 8.71 0.00 32.19 2.15
3004 3155 6.760440 ACCCATGATCTTTGATCTACTGAT 57.240 37.500 8.71 0.00 35.26 2.90
3005 3156 6.385176 AGAACCCATGATCTTTGATCTACTGA 59.615 38.462 8.71 0.00 0.00 3.41
3006 3157 6.590068 AGAACCCATGATCTTTGATCTACTG 58.410 40.000 8.71 4.54 0.00 2.74
3007 3158 6.462207 CGAGAACCCATGATCTTTGATCTACT 60.462 42.308 8.71 0.00 0.00 2.57
3032 3280 0.610687 ACTGCAGAGTAAGGTCAGGC 59.389 55.000 23.35 0.00 0.00 4.85
3033 3281 3.070018 CAAACTGCAGAGTAAGGTCAGG 58.930 50.000 23.35 0.00 0.00 3.86
3036 3284 3.402628 TCCAAACTGCAGAGTAAGGTC 57.597 47.619 23.35 0.00 31.30 3.85
3049 3300 1.816835 CTGCACATCAGCATCCAAACT 59.183 47.619 0.00 0.00 44.68 2.66
3050 3301 2.273370 CTGCACATCAGCATCCAAAC 57.727 50.000 0.00 0.00 44.68 2.93
3059 3310 4.577693 AGTGTTTATATGGCTGCACATCAG 59.422 41.667 0.50 0.00 45.62 2.90
3060 3311 4.525996 AGTGTTTATATGGCTGCACATCA 58.474 39.130 0.50 0.00 32.39 3.07
3124 3385 1.171308 CTTGAGGTGGGTCAGCAATG 58.829 55.000 0.00 0.00 33.95 2.82
3125 3386 0.773644 ACTTGAGGTGGGTCAGCAAT 59.226 50.000 0.00 0.00 33.95 3.56
3126 3387 0.108585 GACTTGAGGTGGGTCAGCAA 59.891 55.000 0.00 0.00 33.95 3.91
3127 3388 1.754745 GACTTGAGGTGGGTCAGCA 59.245 57.895 0.00 0.00 33.95 4.41
3128 3389 1.374758 CGACTTGAGGTGGGTCAGC 60.375 63.158 0.00 0.00 0.00 4.26
3129 3390 1.374758 GCGACTTGAGGTGGGTCAG 60.375 63.158 0.00 0.00 0.00 3.51
3130 3391 1.837051 AGCGACTTGAGGTGGGTCA 60.837 57.895 0.00 0.00 28.57 4.02
3131 3392 1.374758 CAGCGACTTGAGGTGGGTC 60.375 63.158 0.00 0.00 32.30 4.46
3132 3393 2.743718 CAGCGACTTGAGGTGGGT 59.256 61.111 0.00 0.00 34.85 4.51
3135 3396 3.114616 CGCCAGCGACTTGAGGTG 61.115 66.667 6.06 0.00 42.83 4.00
3136 3397 1.812686 TAACGCCAGCGACTTGAGGT 61.813 55.000 20.32 0.00 42.83 3.85
3137 3398 1.078759 CTAACGCCAGCGACTTGAGG 61.079 60.000 20.32 0.00 42.83 3.86
3138 3399 0.109272 TCTAACGCCAGCGACTTGAG 60.109 55.000 20.32 7.87 42.83 3.02
3139 3400 0.109272 CTCTAACGCCAGCGACTTGA 60.109 55.000 20.32 10.29 42.83 3.02
3140 3401 0.109272 TCTCTAACGCCAGCGACTTG 60.109 55.000 20.32 6.53 42.83 3.16
3141 3402 0.818296 ATCTCTAACGCCAGCGACTT 59.182 50.000 20.32 6.07 42.83 3.01
3142 3403 1.676746 TATCTCTAACGCCAGCGACT 58.323 50.000 20.32 7.79 42.83 4.18
3143 3404 2.486951 TTATCTCTAACGCCAGCGAC 57.513 50.000 20.32 0.00 42.83 5.19
3144 3405 4.436986 CGATATTATCTCTAACGCCAGCGA 60.437 45.833 20.32 0.00 42.83 4.93
3145 3406 3.786576 CGATATTATCTCTAACGCCAGCG 59.213 47.826 11.05 11.05 46.03 5.18
3146 3407 4.734917 ACGATATTATCTCTAACGCCAGC 58.265 43.478 2.36 0.00 0.00 4.85
3147 3408 5.939457 TGACGATATTATCTCTAACGCCAG 58.061 41.667 2.36 0.00 0.00 4.85
3148 3409 5.952526 TGACGATATTATCTCTAACGCCA 57.047 39.130 2.36 0.00 0.00 5.69
3149 3410 5.677612 CGATGACGATATTATCTCTAACGCC 59.322 44.000 2.36 0.00 42.66 5.68
3165 3434 1.001269 AGTGGGAGGACGATGACGA 60.001 57.895 0.00 0.00 42.66 4.20
3259 3529 5.628797 AAATTCCTTTGTGGTTGGAATGT 57.371 34.783 7.17 0.00 46.30 2.71
3286 3570 6.500049 CCCCCTCATTTTGTAGAGAGATATCT 59.500 42.308 4.47 4.47 33.74 1.98
3287 3571 6.498651 TCCCCCTCATTTTGTAGAGAGATATC 59.501 42.308 0.00 0.00 33.74 1.63
3295 3579 4.733077 TGTTTCCCCCTCATTTTGTAGA 57.267 40.909 0.00 0.00 0.00 2.59
3309 3593 9.353999 GAATGTTCAGTAATTGTTATGTTTCCC 57.646 33.333 0.00 0.00 0.00 3.97
3336 3620 9.924650 GTATAAAGAACTCTCCAAAGACAAGTA 57.075 33.333 0.00 0.00 0.00 2.24
3361 3715 8.408043 TCCATTTCACTTATGACTTTTCATGT 57.592 30.769 0.00 0.00 42.79 3.21
3395 3749 3.613737 GCACACACATACATGCATTTTCC 59.386 43.478 0.00 0.00 38.00 3.13
3417 3771 4.260985 TGAACATTAGCTACACATGTGGG 58.739 43.478 28.64 20.72 31.37 4.61
3418 3772 6.317140 AGAATGAACATTAGCTACACATGTGG 59.683 38.462 28.64 13.70 31.37 4.17
3544 3899 9.630098 ACAAGAGTAGTGAATATTGCAAAATTG 57.370 29.630 1.71 0.00 0.00 2.32
3545 3900 9.630098 CACAAGAGTAGTGAATATTGCAAAATT 57.370 29.630 1.71 0.00 39.30 1.82
3546 3901 9.013229 TCACAAGAGTAGTGAATATTGCAAAAT 57.987 29.630 1.71 0.00 42.57 1.82
3547 3902 8.389779 TCACAAGAGTAGTGAATATTGCAAAA 57.610 30.769 1.71 0.00 42.57 2.44
3548 3903 7.977789 TCACAAGAGTAGTGAATATTGCAAA 57.022 32.000 1.71 0.00 42.57 3.68
3559 3914 9.778993 CCAATATGAAATTTCACAAGAGTAGTG 57.221 33.333 22.71 17.25 40.49 2.74
3560 3915 9.520515 ACCAATATGAAATTTCACAAGAGTAGT 57.479 29.630 22.71 7.14 40.49 2.73
3561 3916 9.994432 GACCAATATGAAATTTCACAAGAGTAG 57.006 33.333 22.71 9.65 40.49 2.57
3564 3919 8.059798 AGGACCAATATGAAATTTCACAAGAG 57.940 34.615 22.71 13.85 40.49 2.85
3602 3957 4.649218 TGCACATATACTCTCTTGTAGCCA 59.351 41.667 0.00 0.00 0.00 4.75
3603 3958 5.201713 TGCACATATACTCTCTTGTAGCC 57.798 43.478 0.00 0.00 0.00 3.93
3644 4000 7.878127 TCCAATATTTCTTGAACTCTTCTCGTT 59.122 33.333 0.00 0.00 0.00 3.85
3645 4001 7.332182 GTCCAATATTTCTTGAACTCTTCTCGT 59.668 37.037 0.00 0.00 0.00 4.18
3646 4002 7.201565 GGTCCAATATTTCTTGAACTCTTCTCG 60.202 40.741 0.00 0.00 0.00 4.04
3647 4003 7.066404 GGGTCCAATATTTCTTGAACTCTTCTC 59.934 40.741 0.00 0.00 0.00 2.87
3648 4004 6.887002 GGGTCCAATATTTCTTGAACTCTTCT 59.113 38.462 0.00 0.00 0.00 2.85
3649 4005 6.887002 AGGGTCCAATATTTCTTGAACTCTTC 59.113 38.462 0.00 0.00 0.00 2.87
3747 4103 1.815003 GTCACCTTTGATGCCTTCTGG 59.185 52.381 0.00 0.00 33.11 3.86
3769 4125 5.935206 TCGCAAATTTGTCACTAAGGTATGA 59.065 36.000 19.03 0.00 0.00 2.15
3795 4151 3.281158 CCATTGTATGGCAGTCACATGA 58.719 45.455 0.00 0.00 44.70 3.07
3796 4152 3.703286 CCATTGTATGGCAGTCACATG 57.297 47.619 0.00 0.00 44.70 3.21
3807 4163 5.122519 TGTACCTATGCACACCATTGTATG 58.877 41.667 0.00 0.00 35.34 2.39
3808 4164 5.366482 TGTACCTATGCACACCATTGTAT 57.634 39.130 0.00 0.00 35.34 2.29
3809 4165 4.828072 TGTACCTATGCACACCATTGTA 57.172 40.909 0.00 0.00 35.34 2.41
3810 4166 3.712016 TGTACCTATGCACACCATTGT 57.288 42.857 0.00 0.00 35.34 2.71
3811 4167 3.181497 GCTTGTACCTATGCACACCATTG 60.181 47.826 0.00 0.00 35.34 2.82
3812 4168 3.016736 GCTTGTACCTATGCACACCATT 58.983 45.455 0.00 0.00 35.34 3.16
3813 4169 2.239654 AGCTTGTACCTATGCACACCAT 59.760 45.455 0.00 0.00 37.97 3.55
3814 4170 1.628340 AGCTTGTACCTATGCACACCA 59.372 47.619 0.00 0.00 0.00 4.17
3815 4171 2.403252 AGCTTGTACCTATGCACACC 57.597 50.000 0.00 0.00 0.00 4.16
3816 4172 4.363999 CTCTAGCTTGTACCTATGCACAC 58.636 47.826 0.00 0.00 0.00 3.82
3817 4173 3.181475 GCTCTAGCTTGTACCTATGCACA 60.181 47.826 0.00 0.00 38.21 4.57
3818 4174 3.181475 TGCTCTAGCTTGTACCTATGCAC 60.181 47.826 3.26 0.00 42.66 4.57
3819 4175 3.031013 TGCTCTAGCTTGTACCTATGCA 58.969 45.455 3.26 0.00 42.66 3.96
3820 4176 3.319405 TCTGCTCTAGCTTGTACCTATGC 59.681 47.826 3.26 0.00 42.66 3.14
3821 4177 5.300539 TCTTCTGCTCTAGCTTGTACCTATG 59.699 44.000 3.26 0.00 42.66 2.23
3822 4178 5.450453 TCTTCTGCTCTAGCTTGTACCTAT 58.550 41.667 3.26 0.00 42.66 2.57
3823 4179 4.856509 TCTTCTGCTCTAGCTTGTACCTA 58.143 43.478 3.26 0.00 42.66 3.08
3824 4180 3.702792 TCTTCTGCTCTAGCTTGTACCT 58.297 45.455 3.26 0.00 42.66 3.08
3825 4181 4.429108 CTTCTTCTGCTCTAGCTTGTACC 58.571 47.826 3.26 0.00 42.66 3.34
3826 4182 4.081917 ACCTTCTTCTGCTCTAGCTTGTAC 60.082 45.833 3.26 0.00 42.66 2.90
3827 4183 4.081972 CACCTTCTTCTGCTCTAGCTTGTA 60.082 45.833 3.26 0.00 42.66 2.41
3828 4184 2.903135 ACCTTCTTCTGCTCTAGCTTGT 59.097 45.455 3.26 0.00 42.66 3.16
3829 4185 3.056250 TCACCTTCTTCTGCTCTAGCTTG 60.056 47.826 3.26 0.00 42.66 4.01
3830 4186 3.169099 TCACCTTCTTCTGCTCTAGCTT 58.831 45.455 3.26 0.00 42.66 3.74
3831 4187 2.813907 TCACCTTCTTCTGCTCTAGCT 58.186 47.619 3.26 0.00 42.66 3.32
3832 4188 3.601443 TTCACCTTCTTCTGCTCTAGC 57.399 47.619 0.00 0.00 42.50 3.42
3833 4189 5.083533 ACATTCACCTTCTTCTGCTCTAG 57.916 43.478 0.00 0.00 0.00 2.43
3834 4190 5.221722 ACAACATTCACCTTCTTCTGCTCTA 60.222 40.000 0.00 0.00 0.00 2.43
3835 4191 4.070716 CAACATTCACCTTCTTCTGCTCT 58.929 43.478 0.00 0.00 0.00 4.09
3836 4192 3.817647 ACAACATTCACCTTCTTCTGCTC 59.182 43.478 0.00 0.00 0.00 4.26
3837 4193 3.567164 CACAACATTCACCTTCTTCTGCT 59.433 43.478 0.00 0.00 0.00 4.24
3838 4194 3.565482 TCACAACATTCACCTTCTTCTGC 59.435 43.478 0.00 0.00 0.00 4.26
3839 4195 5.506317 GGTTCACAACATTCACCTTCTTCTG 60.506 44.000 0.00 0.00 0.00 3.02
3840 4196 4.580580 GGTTCACAACATTCACCTTCTTCT 59.419 41.667 0.00 0.00 0.00 2.85
3841 4197 4.338118 TGGTTCACAACATTCACCTTCTTC 59.662 41.667 0.00 0.00 0.00 2.87
3842 4198 4.277476 TGGTTCACAACATTCACCTTCTT 58.723 39.130 0.00 0.00 0.00 2.52
3843 4199 3.897239 TGGTTCACAACATTCACCTTCT 58.103 40.909 0.00 0.00 0.00 2.85
3844 4200 4.520492 AGATGGTTCACAACATTCACCTTC 59.480 41.667 0.00 0.00 33.74 3.46
3845 4201 4.279169 CAGATGGTTCACAACATTCACCTT 59.721 41.667 0.00 0.00 0.00 3.50
3846 4202 3.822735 CAGATGGTTCACAACATTCACCT 59.177 43.478 0.00 0.00 0.00 4.00
3847 4203 3.569701 ACAGATGGTTCACAACATTCACC 59.430 43.478 0.00 0.00 0.00 4.02
3848 4204 4.275689 TCACAGATGGTTCACAACATTCAC 59.724 41.667 0.00 0.00 0.00 3.18
3849 4205 4.275689 GTCACAGATGGTTCACAACATTCA 59.724 41.667 0.00 0.00 0.00 2.57
3850 4206 4.516698 AGTCACAGATGGTTCACAACATTC 59.483 41.667 0.00 0.00 0.00 2.67
3851 4207 4.464008 AGTCACAGATGGTTCACAACATT 58.536 39.130 0.00 0.00 0.00 2.71
3852 4208 4.090761 AGTCACAGATGGTTCACAACAT 57.909 40.909 0.00 0.00 0.00 2.71
3853 4209 3.558931 AGTCACAGATGGTTCACAACA 57.441 42.857 0.00 0.00 0.00 3.33
3854 4210 4.452455 CCTTAGTCACAGATGGTTCACAAC 59.548 45.833 0.00 0.00 0.00 3.32
3855 4211 4.641396 CCTTAGTCACAGATGGTTCACAA 58.359 43.478 0.00 0.00 0.00 3.33
3856 4212 3.557054 GCCTTAGTCACAGATGGTTCACA 60.557 47.826 0.00 0.00 0.00 3.58
3857 4213 3.003480 GCCTTAGTCACAGATGGTTCAC 58.997 50.000 0.00 0.00 0.00 3.18
3858 4214 2.637382 TGCCTTAGTCACAGATGGTTCA 59.363 45.455 0.00 0.00 0.00 3.18
3859 4215 3.334583 TGCCTTAGTCACAGATGGTTC 57.665 47.619 0.00 0.00 0.00 3.62
3860 4216 4.307032 AATGCCTTAGTCACAGATGGTT 57.693 40.909 0.00 0.00 0.00 3.67
3861 4217 4.141620 CCTAATGCCTTAGTCACAGATGGT 60.142 45.833 7.82 0.00 33.78 3.55
3862 4218 4.141620 ACCTAATGCCTTAGTCACAGATGG 60.142 45.833 7.82 0.00 33.78 3.51
3863 4219 4.813161 CACCTAATGCCTTAGTCACAGATG 59.187 45.833 7.82 0.00 33.78 2.90
3864 4220 4.471386 ACACCTAATGCCTTAGTCACAGAT 59.529 41.667 7.82 0.00 33.78 2.90
3865 4221 3.838317 ACACCTAATGCCTTAGTCACAGA 59.162 43.478 7.82 0.00 33.78 3.41
3866 4222 4.207891 ACACCTAATGCCTTAGTCACAG 57.792 45.455 7.82 0.00 33.78 3.66
3867 4223 4.775780 ACTACACCTAATGCCTTAGTCACA 59.224 41.667 7.82 0.00 33.78 3.58
3868 4224 5.340439 ACTACACCTAATGCCTTAGTCAC 57.660 43.478 7.82 0.00 33.78 3.67
3869 4225 6.212791 AGAAACTACACCTAATGCCTTAGTCA 59.787 38.462 7.82 0.00 33.78 3.41
3870 4226 6.641474 AGAAACTACACCTAATGCCTTAGTC 58.359 40.000 7.82 0.00 33.78 2.59
3871 4227 6.622427 AGAAACTACACCTAATGCCTTAGT 57.378 37.500 7.82 0.00 33.78 2.24
3872 4228 7.224949 GCTAAGAAACTACACCTAATGCCTTAG 59.775 40.741 2.01 2.01 35.06 2.18
3873 4229 7.046033 GCTAAGAAACTACACCTAATGCCTTA 58.954 38.462 0.00 0.00 0.00 2.69
3874 4230 5.880887 GCTAAGAAACTACACCTAATGCCTT 59.119 40.000 0.00 0.00 0.00 4.35
3875 4231 5.045869 TGCTAAGAAACTACACCTAATGCCT 60.046 40.000 0.00 0.00 0.00 4.75
3876 4232 5.183228 TGCTAAGAAACTACACCTAATGCC 58.817 41.667 0.00 0.00 0.00 4.40
3877 4233 6.927294 ATGCTAAGAAACTACACCTAATGC 57.073 37.500 0.00 0.00 0.00 3.56
3878 4234 9.378551 TGTAATGCTAAGAAACTACACCTAATG 57.621 33.333 0.00 0.00 0.00 1.90
3882 4238 9.547753 CATATGTAATGCTAAGAAACTACACCT 57.452 33.333 0.00 0.00 0.00 4.00
3883 4239 8.774586 CCATATGTAATGCTAAGAAACTACACC 58.225 37.037 1.24 0.00 0.00 4.16
3884 4240 9.542462 TCCATATGTAATGCTAAGAAACTACAC 57.458 33.333 1.24 0.00 0.00 2.90
3887 4243 9.219603 GCATCCATATGTAATGCTAAGAAACTA 57.780 33.333 23.25 0.00 41.95 2.24
3888 4244 7.720957 TGCATCCATATGTAATGCTAAGAAACT 59.279 33.333 27.27 0.00 44.75 2.66
3889 4245 7.874940 TGCATCCATATGTAATGCTAAGAAAC 58.125 34.615 27.27 8.81 44.75 2.78
3890 4246 8.462589 TTGCATCCATATGTAATGCTAAGAAA 57.537 30.769 27.27 16.95 44.75 2.52
3891 4247 8.640063 ATTGCATCCATATGTAATGCTAAGAA 57.360 30.769 27.27 18.92 43.96 2.52
3892 4248 8.640063 AATTGCATCCATATGTAATGCTAAGA 57.360 30.769 27.27 17.16 44.60 2.10
3893 4249 9.701098 AAAATTGCATCCATATGTAATGCTAAG 57.299 29.630 27.27 3.54 44.60 2.18
3894 4250 9.695526 GAAAATTGCATCCATATGTAATGCTAA 57.304 29.630 27.27 21.92 44.60 3.09
3895 4251 9.081204 AGAAAATTGCATCCATATGTAATGCTA 57.919 29.630 27.27 23.31 44.60 3.49
3896 4252 7.959175 AGAAAATTGCATCCATATGTAATGCT 58.041 30.769 27.27 15.26 44.60 3.79
3897 4253 8.492748 CAAGAAAATTGCATCCATATGTAATGC 58.507 33.333 23.55 23.55 44.60 3.56
3898 4254 9.537192 ACAAGAAAATTGCATCCATATGTAATG 57.463 29.630 1.24 6.48 44.60 1.90
3911 4267 9.995003 ACTGGAATAATTAACAAGAAAATTGCA 57.005 25.926 4.97 0.00 0.00 4.08
3919 4275 8.736244 GCCAACTAACTGGAATAATTAACAAGA 58.264 33.333 4.97 0.00 38.96 3.02
3920 4276 8.519526 TGCCAACTAACTGGAATAATTAACAAG 58.480 33.333 0.00 0.00 38.96 3.16
3921 4277 8.410673 TGCCAACTAACTGGAATAATTAACAA 57.589 30.769 0.00 0.00 38.96 2.83
3922 4278 8.410673 TTGCCAACTAACTGGAATAATTAACA 57.589 30.769 0.00 0.00 38.96 2.41
3923 4279 9.301153 CATTGCCAACTAACTGGAATAATTAAC 57.699 33.333 0.00 0.00 38.96 2.01
3924 4280 8.474025 CCATTGCCAACTAACTGGAATAATTAA 58.526 33.333 0.00 0.00 38.96 1.40
3925 4281 7.836685 TCCATTGCCAACTAACTGGAATAATTA 59.163 33.333 0.00 0.00 38.96 1.40
3926 4282 6.667414 TCCATTGCCAACTAACTGGAATAATT 59.333 34.615 0.00 0.00 38.96 1.40
3927 4283 6.096846 GTCCATTGCCAACTAACTGGAATAAT 59.903 38.462 0.00 0.00 38.96 1.28
3928 4284 5.417580 GTCCATTGCCAACTAACTGGAATAA 59.582 40.000 0.00 0.00 38.96 1.40
3929 4285 4.947388 GTCCATTGCCAACTAACTGGAATA 59.053 41.667 0.00 0.00 38.96 1.75
3930 4286 3.763897 GTCCATTGCCAACTAACTGGAAT 59.236 43.478 0.00 0.00 38.96 3.01
3931 4287 3.153919 GTCCATTGCCAACTAACTGGAA 58.846 45.455 0.00 0.00 38.96 3.53
3932 4288 2.107378 TGTCCATTGCCAACTAACTGGA 59.893 45.455 0.00 0.00 38.96 3.86
3933 4289 2.513753 TGTCCATTGCCAACTAACTGG 58.486 47.619 0.00 0.00 39.71 4.00
3934 4290 4.789012 ATTGTCCATTGCCAACTAACTG 57.211 40.909 0.00 0.00 0.00 3.16
3935 4291 5.570320 ACTATTGTCCATTGCCAACTAACT 58.430 37.500 0.00 0.00 0.00 2.24
3936 4292 5.414454 TGACTATTGTCCATTGCCAACTAAC 59.586 40.000 4.82 0.00 42.28 2.34
3937 4293 5.565509 TGACTATTGTCCATTGCCAACTAA 58.434 37.500 4.82 0.00 42.28 2.24
3938 4294 5.172687 TGACTATTGTCCATTGCCAACTA 57.827 39.130 4.82 0.00 42.28 2.24
3939 4295 4.032960 TGACTATTGTCCATTGCCAACT 57.967 40.909 4.82 0.00 42.28 3.16
3940 4296 4.989279 ATGACTATTGTCCATTGCCAAC 57.011 40.909 4.82 0.00 42.28 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.