Multiple sequence alignment - TraesCS5A01G553700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G553700 chr5A 100.000 2564 0 0 1 2564 706019613 706022176 0.000000e+00 4735.0
1 TraesCS5A01G553700 chrUn 92.513 1870 59 20 751 2563 134314045 134312200 0.000000e+00 2603.0
2 TraesCS5A01G553700 chr4B 91.314 1842 87 30 751 2563 666612414 666610617 0.000000e+00 2447.0
3 TraesCS5A01G553700 chr4B 82.927 82 9 5 640 718 666819157 666819078 4.580000e-08 69.4
4 TraesCS5A01G553700 chr4B 97.436 39 1 0 293 331 599954988 599954950 1.650000e-07 67.6
5 TraesCS5A01G553700 chr3D 85.000 100 8 5 1 95 25988968 25988871 7.550000e-16 95.3
6 TraesCS5A01G553700 chr3D 91.489 47 2 2 282 327 611591362 611591407 2.130000e-06 63.9
7 TraesCS5A01G553700 chr2D 81.356 118 19 2 1 116 618181898 618181782 2.720000e-15 93.5
8 TraesCS5A01G553700 chr7D 84.375 96 11 3 1 95 32483930 32484022 9.770000e-15 91.6
9 TraesCS5A01G553700 chr3B 98.077 52 1 0 1822 1873 196142697 196142748 9.770000e-15 91.6
10 TraesCS5A01G553700 chr3B 97.297 37 1 0 291 327 829306309 829306345 2.130000e-06 63.9
11 TraesCS5A01G553700 chr5B 81.034 116 19 1 10 122 417003545 417003430 3.510000e-14 89.8
12 TraesCS5A01G553700 chr5B 97.872 47 1 0 1822 1868 10310917 10310963 5.880000e-12 82.4
13 TraesCS5A01G553700 chr1B 84.043 94 11 3 1 90 357418242 357418335 1.260000e-13 87.9
14 TraesCS5A01G553700 chr1B 81.720 93 11 4 18 106 556988032 556987942 3.540000e-09 73.1
15 TraesCS5A01G553700 chr1D 80.342 117 18 5 11 122 425205575 425205459 1.630000e-12 84.2
16 TraesCS5A01G553700 chr1D 81.915 94 11 5 1 90 255502350 255502259 9.840000e-10 75.0
17 TraesCS5A01G553700 chr3A 79.661 118 21 3 1 115 141820352 141820235 5.880000e-12 82.4
18 TraesCS5A01G553700 chr6B 95.745 47 2 0 1822 1868 236300674 236300628 2.740000e-10 76.8
19 TraesCS5A01G553700 chr2B 84.146 82 8 5 640 718 635154189 635154268 9.840000e-10 75.0
20 TraesCS5A01G553700 chr2A 100.000 29 0 0 1 29 14455871 14455843 1.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G553700 chr5A 706019613 706022176 2563 False 4735 4735 100.000 1 2564 1 chr5A.!!$F1 2563
1 TraesCS5A01G553700 chrUn 134312200 134314045 1845 True 2603 2603 92.513 751 2563 1 chrUn.!!$R1 1812
2 TraesCS5A01G553700 chr4B 666610617 666612414 1797 True 2447 2447 91.314 751 2563 1 chr4B.!!$R2 1812

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
568 569 0.034477 GGCTCCCGGGAATTCTGAAA 60.034 55.0 26.68 0.0 0.0 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1694 1751 0.170116 CCAACCACACACACACACAC 59.83 55.0 0.0 0.0 0.0 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 5.826601 TTTTTGTGTGTATGTGAGAAGCA 57.173 34.783 0.00 0.00 0.00 3.91
76 77 6.389830 TTTTTGTGTGTATGTGAGAAGCAT 57.610 33.333 0.00 0.00 0.00 3.79
77 78 6.389830 TTTTGTGTGTATGTGAGAAGCATT 57.610 33.333 0.00 0.00 0.00 3.56
78 79 6.389830 TTTGTGTGTATGTGAGAAGCATTT 57.610 33.333 0.00 0.00 0.00 2.32
79 80 6.389830 TTGTGTGTATGTGAGAAGCATTTT 57.610 33.333 0.00 0.00 0.00 1.82
80 81 6.000891 TGTGTGTATGTGAGAAGCATTTTC 57.999 37.500 0.00 0.00 0.00 2.29
81 82 5.764686 TGTGTGTATGTGAGAAGCATTTTCT 59.235 36.000 0.00 0.00 0.00 2.52
82 83 6.073058 TGTGTGTATGTGAGAAGCATTTTCTC 60.073 38.462 9.40 9.40 43.85 2.87
93 94 8.976986 GAGAAGCATTTTCTCAATACACATTT 57.023 30.769 11.04 0.00 43.25 2.32
95 96 9.846248 AGAAGCATTTTCTCAATACACATTTAC 57.154 29.630 0.00 0.00 0.00 2.01
96 97 8.986477 AAGCATTTTCTCAATACACATTTACC 57.014 30.769 0.00 0.00 0.00 2.85
97 98 8.121305 AGCATTTTCTCAATACACATTTACCA 57.879 30.769 0.00 0.00 0.00 3.25
98 99 8.584157 AGCATTTTCTCAATACACATTTACCAA 58.416 29.630 0.00 0.00 0.00 3.67
99 100 8.647226 GCATTTTCTCAATACACATTTACCAAC 58.353 33.333 0.00 0.00 0.00 3.77
100 101 9.912634 CATTTTCTCAATACACATTTACCAACT 57.087 29.630 0.00 0.00 0.00 3.16
103 104 9.959749 TTTCTCAATACACATTTACCAACTTTC 57.040 29.630 0.00 0.00 0.00 2.62
104 105 8.684386 TCTCAATACACATTTACCAACTTTCA 57.316 30.769 0.00 0.00 0.00 2.69
105 106 9.126151 TCTCAATACACATTTACCAACTTTCAA 57.874 29.630 0.00 0.00 0.00 2.69
106 107 9.912634 CTCAATACACATTTACCAACTTTCAAT 57.087 29.630 0.00 0.00 0.00 2.57
109 110 6.843069 ACACATTTACCAACTTTCAATTGC 57.157 33.333 0.00 0.00 0.00 3.56
110 111 6.581712 ACACATTTACCAACTTTCAATTGCT 58.418 32.000 0.00 0.00 0.00 3.91
111 112 7.047271 ACACATTTACCAACTTTCAATTGCTT 58.953 30.769 0.00 0.00 0.00 3.91
112 113 7.011295 ACACATTTACCAACTTTCAATTGCTTG 59.989 33.333 0.00 0.00 0.00 4.01
113 114 7.224362 CACATTTACCAACTTTCAATTGCTTGA 59.776 33.333 0.00 0.00 39.62 3.02
114 115 7.933033 ACATTTACCAACTTTCAATTGCTTGAT 59.067 29.630 0.00 0.00 40.95 2.57
115 116 8.776470 CATTTACCAACTTTCAATTGCTTGATT 58.224 29.630 0.00 0.00 40.95 2.57
116 117 9.995003 ATTTACCAACTTTCAATTGCTTGATTA 57.005 25.926 0.00 0.00 40.95 1.75
117 118 9.823647 TTTACCAACTTTCAATTGCTTGATTAA 57.176 25.926 0.00 0.00 40.95 1.40
118 119 7.713764 ACCAACTTTCAATTGCTTGATTAAC 57.286 32.000 0.00 0.00 40.95 2.01
119 120 6.705825 ACCAACTTTCAATTGCTTGATTAACC 59.294 34.615 0.00 0.00 40.95 2.85
120 121 6.930722 CCAACTTTCAATTGCTTGATTAACCT 59.069 34.615 0.00 0.00 40.95 3.50
121 122 7.442062 CCAACTTTCAATTGCTTGATTAACCTT 59.558 33.333 0.00 0.00 40.95 3.50
122 123 9.474920 CAACTTTCAATTGCTTGATTAACCTTA 57.525 29.630 0.00 0.00 40.95 2.69
219 220 9.457110 AAAACTTGAAAACAAAAACATGAAACC 57.543 25.926 0.00 0.00 0.00 3.27
220 221 7.139896 ACTTGAAAACAAAAACATGAAACCC 57.860 32.000 0.00 0.00 0.00 4.11
221 222 6.150307 ACTTGAAAACAAAAACATGAAACCCC 59.850 34.615 0.00 0.00 0.00 4.95
222 223 4.944317 TGAAAACAAAAACATGAAACCCCC 59.056 37.500 0.00 0.00 0.00 5.40
237 238 3.978876 CCCCCAGAAAATTCGAGGT 57.021 52.632 6.84 0.00 0.00 3.85
238 239 2.215942 CCCCCAGAAAATTCGAGGTT 57.784 50.000 6.84 0.00 0.00 3.50
239 240 1.818674 CCCCCAGAAAATTCGAGGTTG 59.181 52.381 6.84 0.17 0.00 3.77
240 241 2.514803 CCCCAGAAAATTCGAGGTTGT 58.485 47.619 6.84 0.00 0.00 3.32
241 242 2.228822 CCCCAGAAAATTCGAGGTTGTG 59.771 50.000 6.84 0.00 0.00 3.33
242 243 2.228822 CCCAGAAAATTCGAGGTTGTGG 59.771 50.000 11.71 11.71 35.88 4.17
243 244 2.351738 CCAGAAAATTCGAGGTTGTGGC 60.352 50.000 7.68 0.00 30.00 5.01
244 245 2.554032 CAGAAAATTCGAGGTTGTGGCT 59.446 45.455 0.00 0.00 0.00 4.75
245 246 3.004734 CAGAAAATTCGAGGTTGTGGCTT 59.995 43.478 0.00 0.00 0.00 4.35
246 247 3.636764 AGAAAATTCGAGGTTGTGGCTTT 59.363 39.130 0.00 0.00 0.00 3.51
247 248 3.643159 AAATTCGAGGTTGTGGCTTTC 57.357 42.857 0.00 0.00 0.00 2.62
248 249 1.156736 ATTCGAGGTTGTGGCTTTCG 58.843 50.000 0.00 0.00 0.00 3.46
249 250 0.882927 TTCGAGGTTGTGGCTTTCGG 60.883 55.000 0.00 0.00 32.52 4.30
250 251 1.597027 CGAGGTTGTGGCTTTCGGT 60.597 57.895 0.00 0.00 0.00 4.69
251 252 1.841663 CGAGGTTGTGGCTTTCGGTG 61.842 60.000 0.00 0.00 0.00 4.94
252 253 0.534203 GAGGTTGTGGCTTTCGGTGA 60.534 55.000 0.00 0.00 0.00 4.02
253 254 0.535102 AGGTTGTGGCTTTCGGTGAG 60.535 55.000 0.00 0.00 0.00 3.51
254 255 1.282875 GTTGTGGCTTTCGGTGAGC 59.717 57.895 0.00 0.00 39.41 4.26
255 256 1.148273 TTGTGGCTTTCGGTGAGCT 59.852 52.632 0.00 0.00 40.01 4.09
256 257 1.165907 TTGTGGCTTTCGGTGAGCTG 61.166 55.000 0.00 0.00 40.01 4.24
257 258 2.032528 TGGCTTTCGGTGAGCTGG 59.967 61.111 0.00 0.00 40.01 4.85
258 259 2.747855 GGCTTTCGGTGAGCTGGG 60.748 66.667 0.00 0.00 40.01 4.45
259 260 3.435186 GCTTTCGGTGAGCTGGGC 61.435 66.667 0.00 0.00 37.18 5.36
260 261 2.747855 CTTTCGGTGAGCTGGGCC 60.748 66.667 0.00 0.00 0.00 5.80
261 262 3.551496 CTTTCGGTGAGCTGGGCCA 62.551 63.158 5.85 5.85 0.00 5.36
262 263 3.551496 TTTCGGTGAGCTGGGCCAG 62.551 63.158 29.44 29.44 34.12 4.85
278 279 1.211969 CAGCACATCTGGCACTTGC 59.788 57.895 0.00 0.00 39.15 4.01
279 280 1.074423 AGCACATCTGGCACTTGCT 59.926 52.632 0.38 2.43 41.70 3.91
280 281 1.211969 GCACATCTGGCACTTGCTG 59.788 57.895 0.38 0.00 41.70 4.41
281 282 1.521450 GCACATCTGGCACTTGCTGT 61.521 55.000 0.38 0.00 41.70 4.40
287 288 4.374702 GGCACTTGCTGTGACGCG 62.375 66.667 3.53 3.53 45.75 6.01
290 291 2.356313 ACTTGCTGTGACGCGAGG 60.356 61.111 15.93 0.00 44.11 4.63
291 292 3.114616 CTTGCTGTGACGCGAGGG 61.115 66.667 15.93 0.00 37.69 4.30
292 293 3.865929 CTTGCTGTGACGCGAGGGT 62.866 63.158 15.93 0.00 37.69 4.34
293 294 3.454587 TTGCTGTGACGCGAGGGTT 62.455 57.895 15.93 0.00 0.00 4.11
294 295 3.112709 GCTGTGACGCGAGGGTTC 61.113 66.667 15.93 0.00 0.00 3.62
295 296 2.432628 CTGTGACGCGAGGGTTCC 60.433 66.667 15.93 0.00 0.00 3.62
296 297 3.934391 CTGTGACGCGAGGGTTCCC 62.934 68.421 15.93 0.00 0.00 3.97
297 298 3.692406 GTGACGCGAGGGTTCCCT 61.692 66.667 15.93 10.51 39.51 4.20
298 299 3.691342 TGACGCGAGGGTTCCCTG 61.691 66.667 15.93 8.74 36.43 4.45
301 302 4.473520 CGCGAGGGTTCCCTGCAT 62.474 66.667 15.80 0.00 36.43 3.96
302 303 2.514824 GCGAGGGTTCCCTGCATC 60.515 66.667 15.80 0.00 36.43 3.91
303 304 3.036429 GCGAGGGTTCCCTGCATCT 62.036 63.158 15.80 0.00 36.43 2.90
304 305 1.144936 CGAGGGTTCCCTGCATCTC 59.855 63.158 15.80 0.00 36.43 2.75
305 306 1.617018 CGAGGGTTCCCTGCATCTCA 61.617 60.000 15.80 0.00 36.43 3.27
306 307 0.107459 GAGGGTTCCCTGCATCTCAC 60.107 60.000 15.80 0.00 36.43 3.51
307 308 0.548682 AGGGTTCCCTGCATCTCACT 60.549 55.000 9.88 0.00 34.71 3.41
308 309 1.204146 GGGTTCCCTGCATCTCACTA 58.796 55.000 0.00 0.00 0.00 2.74
309 310 1.771255 GGGTTCCCTGCATCTCACTAT 59.229 52.381 0.00 0.00 0.00 2.12
310 311 2.972713 GGGTTCCCTGCATCTCACTATA 59.027 50.000 0.00 0.00 0.00 1.31
311 312 3.391296 GGGTTCCCTGCATCTCACTATAA 59.609 47.826 0.00 0.00 0.00 0.98
312 313 4.503991 GGGTTCCCTGCATCTCACTATAAG 60.504 50.000 0.00 0.00 0.00 1.73
313 314 4.061596 GTTCCCTGCATCTCACTATAAGC 58.938 47.826 0.00 0.00 0.00 3.09
314 315 2.297315 TCCCTGCATCTCACTATAAGCG 59.703 50.000 0.00 0.00 0.00 4.68
315 316 2.297315 CCCTGCATCTCACTATAAGCGA 59.703 50.000 0.00 0.00 0.00 4.93
316 317 3.573598 CCTGCATCTCACTATAAGCGAG 58.426 50.000 0.00 0.00 0.00 5.03
317 318 3.254411 CCTGCATCTCACTATAAGCGAGA 59.746 47.826 0.00 0.00 37.75 4.04
318 319 4.225984 CTGCATCTCACTATAAGCGAGAC 58.774 47.826 0.00 0.00 36.37 3.36
319 320 3.632145 TGCATCTCACTATAAGCGAGACA 59.368 43.478 0.00 0.00 36.37 3.41
320 321 4.279420 TGCATCTCACTATAAGCGAGACAT 59.721 41.667 0.00 0.00 36.37 3.06
321 322 5.473504 TGCATCTCACTATAAGCGAGACATA 59.526 40.000 0.00 0.00 36.37 2.29
322 323 6.027131 GCATCTCACTATAAGCGAGACATAG 58.973 44.000 0.00 0.00 36.37 2.23
323 324 6.550843 CATCTCACTATAAGCGAGACATAGG 58.449 44.000 0.00 0.00 36.37 2.57
324 325 5.004448 TCTCACTATAAGCGAGACATAGGG 58.996 45.833 0.00 0.00 29.23 3.53
325 326 4.079970 TCACTATAAGCGAGACATAGGGG 58.920 47.826 0.00 0.00 0.00 4.79
326 327 2.826725 ACTATAAGCGAGACATAGGGGC 59.173 50.000 0.00 0.00 0.00 5.80
327 328 0.603569 ATAAGCGAGACATAGGGGCG 59.396 55.000 0.00 0.00 0.00 6.13
328 329 0.754217 TAAGCGAGACATAGGGGCGT 60.754 55.000 0.00 0.00 0.00 5.68
329 330 2.017559 AAGCGAGACATAGGGGCGTC 62.018 60.000 0.00 0.00 0.00 5.19
330 331 2.728817 CGAGACATAGGGGCGTCC 59.271 66.667 0.00 0.00 32.33 4.79
342 343 3.890674 GCGTCCTGCCTTACCTTG 58.109 61.111 0.00 0.00 37.76 3.61
343 344 1.003718 GCGTCCTGCCTTACCTTGT 60.004 57.895 0.00 0.00 37.76 3.16
344 345 1.019805 GCGTCCTGCCTTACCTTGTC 61.020 60.000 0.00 0.00 37.76 3.18
345 346 0.320374 CGTCCTGCCTTACCTTGTCA 59.680 55.000 0.00 0.00 0.00 3.58
346 347 1.066143 CGTCCTGCCTTACCTTGTCAT 60.066 52.381 0.00 0.00 0.00 3.06
347 348 2.359900 GTCCTGCCTTACCTTGTCATG 58.640 52.381 0.00 0.00 0.00 3.07
348 349 1.098050 CCTGCCTTACCTTGTCATGC 58.902 55.000 0.00 0.00 0.00 4.06
349 350 1.340405 CCTGCCTTACCTTGTCATGCT 60.340 52.381 0.00 0.00 0.00 3.79
350 351 2.440409 CTGCCTTACCTTGTCATGCTT 58.560 47.619 0.00 0.00 0.00 3.91
351 352 2.821969 CTGCCTTACCTTGTCATGCTTT 59.178 45.455 0.00 0.00 0.00 3.51
352 353 2.557924 TGCCTTACCTTGTCATGCTTTG 59.442 45.455 0.00 0.00 0.00 2.77
353 354 2.672195 GCCTTACCTTGTCATGCTTTGC 60.672 50.000 0.00 0.00 0.00 3.68
354 355 2.821969 CCTTACCTTGTCATGCTTTGCT 59.178 45.455 0.00 0.00 0.00 3.91
355 356 3.366679 CCTTACCTTGTCATGCTTTGCTG 60.367 47.826 0.00 0.00 0.00 4.41
356 357 0.963962 ACCTTGTCATGCTTTGCTGG 59.036 50.000 0.00 0.00 0.00 4.85
357 358 0.389426 CCTTGTCATGCTTTGCTGGC 60.389 55.000 0.00 0.00 0.00 4.85
358 359 0.601558 CTTGTCATGCTTTGCTGGCT 59.398 50.000 0.00 0.00 0.00 4.75
359 360 1.000506 CTTGTCATGCTTTGCTGGCTT 59.999 47.619 0.00 0.00 0.00 4.35
360 361 1.042229 TGTCATGCTTTGCTGGCTTT 58.958 45.000 0.00 0.00 0.00 3.51
361 362 1.413445 TGTCATGCTTTGCTGGCTTTT 59.587 42.857 0.00 0.00 0.00 2.27
362 363 1.796459 GTCATGCTTTGCTGGCTTTTG 59.204 47.619 0.00 0.00 0.00 2.44
363 364 1.153353 CATGCTTTGCTGGCTTTTGG 58.847 50.000 0.00 0.00 0.00 3.28
364 365 1.050204 ATGCTTTGCTGGCTTTTGGA 58.950 45.000 0.00 0.00 0.00 3.53
365 366 0.104671 TGCTTTGCTGGCTTTTGGAC 59.895 50.000 0.00 0.00 0.00 4.02
366 367 0.940991 GCTTTGCTGGCTTTTGGACG 60.941 55.000 0.00 0.00 0.00 4.79
367 368 0.318955 CTTTGCTGGCTTTTGGACGG 60.319 55.000 0.00 0.00 0.00 4.79
368 369 1.040339 TTTGCTGGCTTTTGGACGGT 61.040 50.000 0.00 0.00 0.00 4.83
369 370 1.733402 TTGCTGGCTTTTGGACGGTG 61.733 55.000 0.00 0.00 0.00 4.94
370 371 2.644992 CTGGCTTTTGGACGGTGC 59.355 61.111 0.00 0.00 0.00 5.01
371 372 1.898574 CTGGCTTTTGGACGGTGCT 60.899 57.895 0.31 0.00 0.00 4.40
372 373 1.454847 TGGCTTTTGGACGGTGCTT 60.455 52.632 0.31 0.00 0.00 3.91
373 374 0.179015 TGGCTTTTGGACGGTGCTTA 60.179 50.000 0.31 0.00 0.00 3.09
374 375 1.173913 GGCTTTTGGACGGTGCTTAT 58.826 50.000 0.31 0.00 0.00 1.73
375 376 2.290387 TGGCTTTTGGACGGTGCTTATA 60.290 45.455 0.31 0.00 0.00 0.98
376 377 2.750712 GGCTTTTGGACGGTGCTTATAA 59.249 45.455 0.31 0.00 0.00 0.98
377 378 3.191791 GGCTTTTGGACGGTGCTTATAAA 59.808 43.478 0.31 0.00 0.00 1.40
378 379 4.321378 GGCTTTTGGACGGTGCTTATAAAA 60.321 41.667 0.31 0.00 0.00 1.52
379 380 5.224135 GCTTTTGGACGGTGCTTATAAAAA 58.776 37.500 0.31 0.00 0.00 1.94
380 381 5.344933 GCTTTTGGACGGTGCTTATAAAAAG 59.655 40.000 13.88 13.88 36.77 2.27
381 382 6.394025 TTTTGGACGGTGCTTATAAAAAGT 57.606 33.333 0.31 0.00 0.00 2.66
382 383 5.616488 TTGGACGGTGCTTATAAAAAGTC 57.384 39.130 0.31 0.00 0.00 3.01
383 384 4.004982 TGGACGGTGCTTATAAAAAGTCC 58.995 43.478 13.72 13.72 45.03 3.85
384 385 3.376234 GGACGGTGCTTATAAAAAGTCCC 59.624 47.826 11.25 0.00 40.54 4.46
385 386 4.004982 GACGGTGCTTATAAAAAGTCCCA 58.995 43.478 0.00 0.00 0.00 4.37
386 387 4.007659 ACGGTGCTTATAAAAAGTCCCAG 58.992 43.478 0.00 0.00 0.00 4.45
387 388 4.258543 CGGTGCTTATAAAAAGTCCCAGA 58.741 43.478 0.00 0.00 0.00 3.86
388 389 4.094442 CGGTGCTTATAAAAAGTCCCAGAC 59.906 45.833 0.00 0.00 0.00 3.51
389 390 5.254115 GGTGCTTATAAAAAGTCCCAGACT 58.746 41.667 0.00 0.00 45.64 3.24
390 391 6.412214 GGTGCTTATAAAAAGTCCCAGACTA 58.588 40.000 0.00 0.00 42.59 2.59
391 392 6.539103 GGTGCTTATAAAAAGTCCCAGACTAG 59.461 42.308 0.00 0.00 42.59 2.57
392 393 6.037281 GTGCTTATAAAAAGTCCCAGACTAGC 59.963 42.308 0.00 2.53 42.59 3.42
393 394 6.113411 GCTTATAAAAAGTCCCAGACTAGCA 58.887 40.000 0.00 0.00 42.59 3.49
394 395 6.598064 GCTTATAAAAAGTCCCAGACTAGCAA 59.402 38.462 0.00 0.00 42.59 3.91
395 396 7.120726 GCTTATAAAAAGTCCCAGACTAGCAAA 59.879 37.037 0.00 0.00 42.59 3.68
396 397 8.927675 TTATAAAAAGTCCCAGACTAGCAAAA 57.072 30.769 0.00 0.00 42.59 2.44
397 398 7.833285 ATAAAAAGTCCCAGACTAGCAAAAA 57.167 32.000 0.00 0.00 42.59 1.94
416 417 3.893326 AAAATGCATCTTAAGCCCACC 57.107 42.857 0.00 0.00 0.00 4.61
417 418 1.780503 AATGCATCTTAAGCCCACCC 58.219 50.000 0.00 0.00 0.00 4.61
418 419 0.466189 ATGCATCTTAAGCCCACCCG 60.466 55.000 0.00 0.00 0.00 5.28
419 420 1.823899 GCATCTTAAGCCCACCCGG 60.824 63.158 0.00 0.00 0.00 5.73
429 430 4.410400 CCACCCGGGAGACAAGCC 62.410 72.222 32.02 0.00 40.01 4.35
430 431 3.636231 CACCCGGGAGACAAGCCA 61.636 66.667 32.02 0.00 0.00 4.75
431 432 3.322466 ACCCGGGAGACAAGCCAG 61.322 66.667 32.02 0.00 0.00 4.85
432 433 3.003173 CCCGGGAGACAAGCCAGA 61.003 66.667 18.48 0.00 0.00 3.86
433 434 2.266055 CCGGGAGACAAGCCAGAC 59.734 66.667 0.00 0.00 0.00 3.51
434 435 2.266055 CGGGAGACAAGCCAGACC 59.734 66.667 0.00 0.00 0.00 3.85
435 436 2.671682 GGGAGACAAGCCAGACCC 59.328 66.667 0.00 0.00 0.00 4.46
436 437 1.920835 GGGAGACAAGCCAGACCCT 60.921 63.158 0.00 0.00 35.03 4.34
437 438 1.599576 GGAGACAAGCCAGACCCTC 59.400 63.158 0.00 0.00 0.00 4.30
438 439 0.907230 GGAGACAAGCCAGACCCTCT 60.907 60.000 0.00 0.00 0.00 3.69
439 440 0.534873 GAGACAAGCCAGACCCTCTC 59.465 60.000 0.00 0.00 0.00 3.20
440 441 0.907230 AGACAAGCCAGACCCTCTCC 60.907 60.000 0.00 0.00 0.00 3.71
441 442 1.152030 ACAAGCCAGACCCTCTCCA 60.152 57.895 0.00 0.00 0.00 3.86
442 443 1.197430 ACAAGCCAGACCCTCTCCAG 61.197 60.000 0.00 0.00 0.00 3.86
443 444 1.614824 AAGCCAGACCCTCTCCAGG 60.615 63.158 0.00 0.00 39.98 4.45
444 445 2.039624 GCCAGACCCTCTCCAGGA 59.960 66.667 0.00 0.00 43.65 3.86
445 446 2.363172 GCCAGACCCTCTCCAGGAC 61.363 68.421 0.00 0.00 43.65 3.85
446 447 1.687493 CCAGACCCTCTCCAGGACC 60.687 68.421 0.00 0.00 43.65 4.46
447 448 2.055042 CAGACCCTCTCCAGGACCG 61.055 68.421 0.00 0.00 43.65 4.79
448 449 2.760385 GACCCTCTCCAGGACCGG 60.760 72.222 0.00 0.00 43.65 5.28
449 450 4.400251 ACCCTCTCCAGGACCGGG 62.400 72.222 14.57 14.57 43.65 5.73
450 451 4.400251 CCCTCTCCAGGACCGGGT 62.400 72.222 10.76 0.00 43.65 5.28
451 452 2.760385 CCTCTCCAGGACCGGGTC 60.760 72.222 19.06 19.06 43.65 4.46
452 453 3.141488 CTCTCCAGGACCGGGTCG 61.141 72.222 20.35 8.01 32.65 4.79
453 454 3.940506 CTCTCCAGGACCGGGTCGT 62.941 68.421 20.35 18.33 32.65 4.34
454 455 3.450115 CTCCAGGACCGGGTCGTC 61.450 72.222 18.89 7.33 32.65 4.20
477 478 4.408821 TTGCTGCGCGGGGAGAAT 62.409 61.111 25.02 0.00 32.53 2.40
478 479 2.923426 CTTGCTGCGCGGGGAGAATA 62.923 60.000 25.02 7.03 32.53 1.75
479 480 2.031163 GCTGCGCGGGGAGAATAT 59.969 61.111 25.02 0.00 32.53 1.28
480 481 2.029844 GCTGCGCGGGGAGAATATC 61.030 63.158 25.02 2.41 32.53 1.63
481 482 1.668294 CTGCGCGGGGAGAATATCT 59.332 57.895 16.21 0.00 32.53 1.98
482 483 0.888619 CTGCGCGGGGAGAATATCTA 59.111 55.000 16.21 0.00 32.53 1.98
483 484 0.888619 TGCGCGGGGAGAATATCTAG 59.111 55.000 8.83 0.00 0.00 2.43
484 485 0.889306 GCGCGGGGAGAATATCTAGT 59.111 55.000 8.83 0.00 0.00 2.57
485 486 1.402984 GCGCGGGGAGAATATCTAGTG 60.403 57.143 8.83 0.00 0.00 2.74
486 487 1.402984 CGCGGGGAGAATATCTAGTGC 60.403 57.143 0.00 0.00 0.00 4.40
487 488 1.896465 GCGGGGAGAATATCTAGTGCT 59.104 52.381 0.00 0.00 0.00 4.40
488 489 2.300437 GCGGGGAGAATATCTAGTGCTT 59.700 50.000 0.00 0.00 0.00 3.91
489 490 3.615351 GCGGGGAGAATATCTAGTGCTTC 60.615 52.174 0.00 0.00 0.00 3.86
490 491 3.366476 CGGGGAGAATATCTAGTGCTTCG 60.366 52.174 0.00 0.00 0.00 3.79
491 492 3.056465 GGGGAGAATATCTAGTGCTTCGG 60.056 52.174 0.00 0.00 0.00 4.30
492 493 3.580731 GGAGAATATCTAGTGCTTCGGC 58.419 50.000 0.00 0.00 42.19 5.54
514 515 3.780626 ACCCTGGGTGCTATAGAGATAC 58.219 50.000 19.82 0.00 32.98 2.24
515 516 3.142217 ACCCTGGGTGCTATAGAGATACA 59.858 47.826 19.82 0.00 32.98 2.29
516 517 3.766591 CCCTGGGTGCTATAGAGATACAG 59.233 52.174 3.97 4.66 0.00 2.74
517 518 3.194542 CCTGGGTGCTATAGAGATACAGC 59.805 52.174 3.21 1.03 34.56 4.40
518 519 3.829026 CTGGGTGCTATAGAGATACAGCA 59.171 47.826 3.21 0.00 41.52 4.41
519 520 4.420206 TGGGTGCTATAGAGATACAGCAT 58.580 43.478 3.21 0.00 45.09 3.79
520 521 4.464244 TGGGTGCTATAGAGATACAGCATC 59.536 45.833 3.21 0.00 45.09 3.91
521 522 5.004922 GGTGCTATAGAGATACAGCATCC 57.995 47.826 3.21 0.00 45.09 3.51
522 523 4.439426 GGTGCTATAGAGATACAGCATCCG 60.439 50.000 3.21 0.00 45.09 4.18
523 524 4.396478 GTGCTATAGAGATACAGCATCCGA 59.604 45.833 3.21 0.00 45.09 4.55
524 525 4.637977 TGCTATAGAGATACAGCATCCGAG 59.362 45.833 3.21 0.00 39.03 4.63
525 526 4.878971 GCTATAGAGATACAGCATCCGAGA 59.121 45.833 3.21 0.00 33.75 4.04
526 527 5.007626 GCTATAGAGATACAGCATCCGAGAG 59.992 48.000 3.21 0.00 33.75 3.20
527 528 1.885887 AGAGATACAGCATCCGAGAGC 59.114 52.381 0.00 0.00 33.75 4.09
528 529 0.965439 AGATACAGCATCCGAGAGCC 59.035 55.000 0.00 0.00 33.75 4.70
529 530 0.387878 GATACAGCATCCGAGAGCCG 60.388 60.000 0.00 0.00 38.18 5.52
530 531 1.109920 ATACAGCATCCGAGAGCCGT 61.110 55.000 0.00 0.00 36.31 5.68
531 532 1.320344 TACAGCATCCGAGAGCCGTT 61.320 55.000 0.00 0.00 36.31 4.44
532 533 2.169789 CAGCATCCGAGAGCCGTTG 61.170 63.158 0.00 0.00 36.31 4.10
533 534 2.892425 GCATCCGAGAGCCGTTGG 60.892 66.667 0.00 0.00 36.31 3.77
534 535 2.892640 CATCCGAGAGCCGTTGGA 59.107 61.111 0.00 0.00 36.31 3.53
535 536 1.443407 CATCCGAGAGCCGTTGGAT 59.557 57.895 0.00 0.00 40.92 3.41
536 537 0.598680 CATCCGAGAGCCGTTGGATC 60.599 60.000 2.17 0.00 38.51 3.36
544 545 3.682372 GAGCCGTTGGATCTGAAATTC 57.318 47.619 0.00 0.00 34.95 2.17
545 546 3.009723 GAGCCGTTGGATCTGAAATTCA 58.990 45.455 0.00 0.00 34.95 2.57
546 547 3.420893 AGCCGTTGGATCTGAAATTCAA 58.579 40.909 0.00 0.00 0.00 2.69
547 548 3.191371 AGCCGTTGGATCTGAAATTCAAC 59.809 43.478 0.00 0.01 35.65 3.18
550 551 4.096732 GTTGGATCTGAAATTCAACGGG 57.903 45.455 0.00 0.00 0.00 5.28
551 552 2.091541 TGGATCTGAAATTCAACGGGC 58.908 47.619 0.00 0.00 0.00 6.13
552 553 2.290896 TGGATCTGAAATTCAACGGGCT 60.291 45.455 0.00 0.00 0.00 5.19
553 554 2.356069 GGATCTGAAATTCAACGGGCTC 59.644 50.000 0.00 0.00 0.00 4.70
554 555 1.821216 TCTGAAATTCAACGGGCTCC 58.179 50.000 0.00 0.00 0.00 4.70
555 556 0.811281 CTGAAATTCAACGGGCTCCC 59.189 55.000 0.00 0.00 0.00 4.30
565 566 2.193248 GGGCTCCCGGGAATTCTG 59.807 66.667 26.68 13.87 0.00 3.02
566 567 2.375345 GGGCTCCCGGGAATTCTGA 61.375 63.158 26.68 0.00 0.00 3.27
567 568 1.607612 GGCTCCCGGGAATTCTGAA 59.392 57.895 26.68 0.00 0.00 3.02
568 569 0.034477 GGCTCCCGGGAATTCTGAAA 60.034 55.000 26.68 0.00 0.00 2.69
569 570 1.095600 GCTCCCGGGAATTCTGAAAC 58.904 55.000 26.68 1.60 0.00 2.78
570 571 1.613255 GCTCCCGGGAATTCTGAAACA 60.613 52.381 26.68 0.00 0.00 2.83
571 572 2.945890 GCTCCCGGGAATTCTGAAACAT 60.946 50.000 26.68 0.00 0.00 2.71
572 573 3.356290 CTCCCGGGAATTCTGAAACATT 58.644 45.455 26.68 0.00 0.00 2.71
573 574 3.763897 CTCCCGGGAATTCTGAAACATTT 59.236 43.478 26.68 0.00 0.00 2.32
574 575 4.156477 TCCCGGGAATTCTGAAACATTTT 58.844 39.130 24.50 0.00 0.00 1.82
575 576 4.021544 TCCCGGGAATTCTGAAACATTTTG 60.022 41.667 24.50 0.00 0.00 2.44
576 577 3.679502 CCGGGAATTCTGAAACATTTTGC 59.320 43.478 5.23 0.00 0.00 3.68
577 578 4.305769 CGGGAATTCTGAAACATTTTGCA 58.694 39.130 5.23 0.00 0.00 4.08
578 579 4.749099 CGGGAATTCTGAAACATTTTGCAA 59.251 37.500 5.23 0.00 0.00 4.08
579 580 5.236047 CGGGAATTCTGAAACATTTTGCAAA 59.764 36.000 8.05 8.05 0.00 3.68
580 581 6.238320 CGGGAATTCTGAAACATTTTGCAAAA 60.238 34.615 25.76 25.76 0.00 2.44
581 582 7.479150 GGGAATTCTGAAACATTTTGCAAAAA 58.521 30.769 27.10 11.93 0.00 1.94
582 583 7.644945 GGGAATTCTGAAACATTTTGCAAAAAG 59.355 33.333 27.10 24.37 0.00 2.27
583 584 7.166307 GGAATTCTGAAACATTTTGCAAAAAGC 59.834 33.333 27.10 14.92 45.96 3.51
584 585 5.482686 TCTGAAACATTTTGCAAAAAGCC 57.517 34.783 27.10 15.64 44.83 4.35
585 586 4.940046 TCTGAAACATTTTGCAAAAAGCCA 59.060 33.333 27.10 18.69 44.83 4.75
586 587 5.589452 TCTGAAACATTTTGCAAAAAGCCAT 59.411 32.000 27.10 12.98 44.83 4.40
587 588 6.095160 TCTGAAACATTTTGCAAAAAGCCATT 59.905 30.769 27.10 17.77 44.83 3.16
588 589 6.628185 TGAAACATTTTGCAAAAAGCCATTT 58.372 28.000 27.10 20.27 44.83 2.32
589 590 7.765307 TGAAACATTTTGCAAAAAGCCATTTA 58.235 26.923 27.10 13.03 44.83 1.40
590 591 7.914346 TGAAACATTTTGCAAAAAGCCATTTAG 59.086 29.630 27.10 11.38 44.83 1.85
591 592 7.565323 AACATTTTGCAAAAAGCCATTTAGA 57.435 28.000 27.10 1.37 44.83 2.10
592 593 7.565323 ACATTTTGCAAAAAGCCATTTAGAA 57.435 28.000 27.10 1.16 44.83 2.10
593 594 7.641760 ACATTTTGCAAAAAGCCATTTAGAAG 58.358 30.769 27.10 1.09 44.83 2.85
594 595 7.282901 ACATTTTGCAAAAAGCCATTTAGAAGT 59.717 29.630 27.10 4.01 44.83 3.01
595 596 6.843069 TTTGCAAAAAGCCATTTAGAAGTC 57.157 33.333 10.02 0.00 44.83 3.01
596 597 4.881920 TGCAAAAAGCCATTTAGAAGTCC 58.118 39.130 0.00 0.00 44.83 3.85
597 598 3.920412 GCAAAAAGCCATTTAGAAGTCCG 59.080 43.478 0.00 0.00 37.23 4.79
598 599 4.320935 GCAAAAAGCCATTTAGAAGTCCGA 60.321 41.667 0.00 0.00 37.23 4.55
599 600 5.622233 GCAAAAAGCCATTTAGAAGTCCGAT 60.622 40.000 0.00 0.00 37.23 4.18
600 601 6.404293 GCAAAAAGCCATTTAGAAGTCCGATA 60.404 38.462 0.00 0.00 37.23 2.92
601 602 7.535139 CAAAAAGCCATTTAGAAGTCCGATAA 58.465 34.615 0.00 0.00 0.00 1.75
602 603 7.881775 AAAAGCCATTTAGAAGTCCGATAAT 57.118 32.000 0.00 0.00 0.00 1.28
603 604 7.881775 AAAGCCATTTAGAAGTCCGATAATT 57.118 32.000 0.00 0.00 0.00 1.40
604 605 8.974060 AAAGCCATTTAGAAGTCCGATAATTA 57.026 30.769 0.00 0.00 0.00 1.40
605 606 8.608844 AAGCCATTTAGAAGTCCGATAATTAG 57.391 34.615 0.00 0.00 0.00 1.73
606 607 7.162082 AGCCATTTAGAAGTCCGATAATTAGG 58.838 38.462 0.00 0.00 0.00 2.69
607 608 6.128254 GCCATTTAGAAGTCCGATAATTAGGC 60.128 42.308 0.00 0.00 0.00 3.93
608 609 6.934645 CCATTTAGAAGTCCGATAATTAGGCA 59.065 38.462 0.00 0.00 0.00 4.75
609 610 7.607991 CCATTTAGAAGTCCGATAATTAGGCAT 59.392 37.037 0.00 0.00 0.00 4.40
610 611 9.653287 CATTTAGAAGTCCGATAATTAGGCATA 57.347 33.333 0.00 0.00 0.00 3.14
611 612 9.654663 ATTTAGAAGTCCGATAATTAGGCATAC 57.345 33.333 0.00 0.00 0.00 2.39
612 613 6.665992 AGAAGTCCGATAATTAGGCATACA 57.334 37.500 0.00 0.00 0.00 2.29
613 614 7.246171 AGAAGTCCGATAATTAGGCATACAT 57.754 36.000 0.00 0.00 0.00 2.29
614 615 7.680730 AGAAGTCCGATAATTAGGCATACATT 58.319 34.615 0.00 0.00 0.00 2.71
615 616 7.819900 AGAAGTCCGATAATTAGGCATACATTC 59.180 37.037 0.00 0.00 0.00 2.67
616 617 7.004555 AGTCCGATAATTAGGCATACATTCA 57.995 36.000 0.00 0.00 0.00 2.57
617 618 7.099764 AGTCCGATAATTAGGCATACATTCAG 58.900 38.462 0.00 0.00 0.00 3.02
618 619 5.874810 TCCGATAATTAGGCATACATTCAGC 59.125 40.000 0.00 0.00 0.00 4.26
619 620 5.643348 CCGATAATTAGGCATACATTCAGCA 59.357 40.000 0.00 0.00 0.00 4.41
620 621 6.149308 CCGATAATTAGGCATACATTCAGCAA 59.851 38.462 0.00 0.00 0.00 3.91
621 622 7.308529 CCGATAATTAGGCATACATTCAGCAAA 60.309 37.037 0.00 0.00 0.00 3.68
622 623 8.239314 CGATAATTAGGCATACATTCAGCAAAT 58.761 33.333 0.00 0.00 0.00 2.32
623 624 9.565213 GATAATTAGGCATACATTCAGCAAATC 57.435 33.333 0.00 0.00 0.00 2.17
624 625 5.772825 TTAGGCATACATTCAGCAAATCC 57.227 39.130 0.00 0.00 0.00 3.01
625 626 3.634504 AGGCATACATTCAGCAAATCCA 58.365 40.909 0.00 0.00 0.00 3.41
626 627 3.635373 AGGCATACATTCAGCAAATCCAG 59.365 43.478 0.00 0.00 0.00 3.86
627 628 3.378339 GCATACATTCAGCAAATCCAGC 58.622 45.455 0.00 0.00 0.00 4.85
628 629 3.181484 GCATACATTCAGCAAATCCAGCA 60.181 43.478 0.00 0.00 0.00 4.41
629 630 4.678574 GCATACATTCAGCAAATCCAGCAA 60.679 41.667 0.00 0.00 0.00 3.91
630 631 3.308438 ACATTCAGCAAATCCAGCAAC 57.692 42.857 0.00 0.00 0.00 4.17
631 632 2.895404 ACATTCAGCAAATCCAGCAACT 59.105 40.909 0.00 0.00 0.00 3.16
632 633 3.057033 ACATTCAGCAAATCCAGCAACTC 60.057 43.478 0.00 0.00 0.00 3.01
633 634 1.538047 TCAGCAAATCCAGCAACTCC 58.462 50.000 0.00 0.00 0.00 3.85
634 635 0.529378 CAGCAAATCCAGCAACTCCC 59.471 55.000 0.00 0.00 0.00 4.30
635 636 0.112995 AGCAAATCCAGCAACTCCCA 59.887 50.000 0.00 0.00 0.00 4.37
636 637 0.968405 GCAAATCCAGCAACTCCCAA 59.032 50.000 0.00 0.00 0.00 4.12
637 638 1.344114 GCAAATCCAGCAACTCCCAAA 59.656 47.619 0.00 0.00 0.00 3.28
638 639 2.027837 GCAAATCCAGCAACTCCCAAAT 60.028 45.455 0.00 0.00 0.00 2.32
639 640 3.195396 GCAAATCCAGCAACTCCCAAATA 59.805 43.478 0.00 0.00 0.00 1.40
640 641 4.747810 CAAATCCAGCAACTCCCAAATAC 58.252 43.478 0.00 0.00 0.00 1.89
641 642 2.507407 TCCAGCAACTCCCAAATACC 57.493 50.000 0.00 0.00 0.00 2.73
642 643 1.094785 CCAGCAACTCCCAAATACCG 58.905 55.000 0.00 0.00 0.00 4.02
643 644 1.613255 CCAGCAACTCCCAAATACCGT 60.613 52.381 0.00 0.00 0.00 4.83
644 645 1.737793 CAGCAACTCCCAAATACCGTC 59.262 52.381 0.00 0.00 0.00 4.79
645 646 1.092348 GCAACTCCCAAATACCGTCC 58.908 55.000 0.00 0.00 0.00 4.79
646 647 1.612199 GCAACTCCCAAATACCGTCCA 60.612 52.381 0.00 0.00 0.00 4.02
647 648 2.944094 GCAACTCCCAAATACCGTCCAT 60.944 50.000 0.00 0.00 0.00 3.41
648 649 2.943033 CAACTCCCAAATACCGTCCATC 59.057 50.000 0.00 0.00 0.00 3.51
649 650 2.478292 ACTCCCAAATACCGTCCATCT 58.522 47.619 0.00 0.00 0.00 2.90
650 651 2.170607 ACTCCCAAATACCGTCCATCTG 59.829 50.000 0.00 0.00 0.00 2.90
651 652 2.434336 CTCCCAAATACCGTCCATCTGA 59.566 50.000 0.00 0.00 0.00 3.27
652 653 3.045634 TCCCAAATACCGTCCATCTGAT 58.954 45.455 0.00 0.00 0.00 2.90
653 654 4.228010 TCCCAAATACCGTCCATCTGATA 58.772 43.478 0.00 0.00 0.00 2.15
654 655 4.039973 TCCCAAATACCGTCCATCTGATAC 59.960 45.833 0.00 0.00 0.00 2.24
655 656 4.315803 CCAAATACCGTCCATCTGATACC 58.684 47.826 0.00 0.00 0.00 2.73
656 657 4.315803 CAAATACCGTCCATCTGATACCC 58.684 47.826 0.00 0.00 0.00 3.69
657 658 1.612676 TACCGTCCATCTGATACCCG 58.387 55.000 0.00 0.00 0.00 5.28
658 659 0.106369 ACCGTCCATCTGATACCCGA 60.106 55.000 0.00 0.00 0.00 5.14
659 660 1.257743 CCGTCCATCTGATACCCGAT 58.742 55.000 0.00 0.00 0.00 4.18
660 661 1.067565 CCGTCCATCTGATACCCGATG 60.068 57.143 0.00 0.00 37.39 3.84
663 664 3.540211 CATCTGATACCCGATGGCC 57.460 57.895 0.00 0.00 34.75 5.36
664 665 0.686789 CATCTGATACCCGATGGCCA 59.313 55.000 8.56 8.56 34.75 5.36
665 666 0.979665 ATCTGATACCCGATGGCCAG 59.020 55.000 13.05 0.00 33.59 4.85
666 667 1.121407 TCTGATACCCGATGGCCAGG 61.121 60.000 13.05 10.17 33.59 4.45
667 668 1.074850 TGATACCCGATGGCCAGGA 60.075 57.895 16.13 0.00 33.59 3.86
668 669 1.121407 TGATACCCGATGGCCAGGAG 61.121 60.000 16.13 7.18 33.59 3.69
669 670 2.456287 GATACCCGATGGCCAGGAGC 62.456 65.000 16.13 0.00 42.60 4.70
678 679 2.109181 GCCAGGAGCCCGTATCAC 59.891 66.667 0.00 0.00 34.35 3.06
679 680 2.417516 CCAGGAGCCCGTATCACG 59.582 66.667 0.00 0.00 42.11 4.35
689 690 3.251817 CGTATCACGGTAGCACCTG 57.748 57.895 4.21 2.57 38.08 4.00
690 691 0.248907 CGTATCACGGTAGCACCTGG 60.249 60.000 0.00 0.00 38.08 4.45
691 692 0.104304 GTATCACGGTAGCACCTGGG 59.896 60.000 0.00 0.00 35.66 4.45
692 693 0.324923 TATCACGGTAGCACCTGGGT 60.325 55.000 0.00 0.00 35.66 4.51
693 694 1.614241 ATCACGGTAGCACCTGGGTC 61.614 60.000 0.00 0.00 35.66 4.46
694 695 3.001406 ACGGTAGCACCTGGGTCC 61.001 66.667 0.00 0.00 35.66 4.46
695 696 2.683933 CGGTAGCACCTGGGTCCT 60.684 66.667 0.00 0.00 35.66 3.85
696 697 2.291043 CGGTAGCACCTGGGTCCTT 61.291 63.158 0.00 0.00 35.66 3.36
697 698 1.299976 GGTAGCACCTGGGTCCTTG 59.700 63.158 0.00 0.00 34.73 3.61
698 699 1.299976 GTAGCACCTGGGTCCTTGG 59.700 63.158 0.00 0.00 0.00 3.61
699 700 1.923395 TAGCACCTGGGTCCTTGGG 60.923 63.158 0.00 0.93 0.00 4.12
700 701 2.409984 TAGCACCTGGGTCCTTGGGA 62.410 60.000 0.00 0.00 0.00 4.37
701 702 3.081554 CACCTGGGTCCTTGGGAG 58.918 66.667 0.00 0.00 29.39 4.30
702 703 2.204151 ACCTGGGTCCTTGGGAGG 60.204 66.667 0.00 0.00 45.02 4.30
717 718 3.318313 TGGGAGGACCAGATATTCTTCC 58.682 50.000 0.00 0.00 46.80 3.46
718 719 2.300437 GGGAGGACCAGATATTCTTCCG 59.700 54.545 0.00 0.00 39.85 4.30
719 720 2.300437 GGAGGACCAGATATTCTTCCGG 59.700 54.545 0.00 0.00 30.53 5.14
720 721 2.966516 GAGGACCAGATATTCTTCCGGT 59.033 50.000 0.00 0.00 30.53 5.28
721 722 3.385115 AGGACCAGATATTCTTCCGGTT 58.615 45.455 0.00 0.00 30.53 4.44
722 723 4.553678 AGGACCAGATATTCTTCCGGTTA 58.446 43.478 0.00 0.00 30.53 2.85
723 724 4.344390 AGGACCAGATATTCTTCCGGTTAC 59.656 45.833 0.00 0.00 30.53 2.50
724 725 4.502777 GGACCAGATATTCTTCCGGTTACC 60.503 50.000 0.00 0.00 0.00 2.85
725 726 3.390311 ACCAGATATTCTTCCGGTTACCC 59.610 47.826 0.00 0.00 0.00 3.69
726 727 3.389983 CCAGATATTCTTCCGGTTACCCA 59.610 47.826 0.00 0.00 0.00 4.51
727 728 4.041691 CCAGATATTCTTCCGGTTACCCAT 59.958 45.833 0.00 0.00 0.00 4.00
728 729 4.997395 CAGATATTCTTCCGGTTACCCATG 59.003 45.833 0.00 0.00 0.00 3.66
729 730 2.052782 ATTCTTCCGGTTACCCATGC 57.947 50.000 0.00 0.00 0.00 4.06
730 731 0.034863 TTCTTCCGGTTACCCATGCC 60.035 55.000 0.00 0.00 0.00 4.40
731 732 0.912487 TCTTCCGGTTACCCATGCCT 60.912 55.000 0.00 0.00 0.00 4.75
732 733 0.834612 CTTCCGGTTACCCATGCCTA 59.165 55.000 0.00 0.00 0.00 3.93
733 734 0.542805 TTCCGGTTACCCATGCCTAC 59.457 55.000 0.00 0.00 0.00 3.18
734 735 1.147600 CCGGTTACCCATGCCTACC 59.852 63.158 0.00 0.00 0.00 3.18
735 736 1.147600 CGGTTACCCATGCCTACCC 59.852 63.158 0.00 0.00 0.00 3.69
736 737 1.535190 GGTTACCCATGCCTACCCC 59.465 63.158 0.00 0.00 0.00 4.95
737 738 0.991893 GGTTACCCATGCCTACCCCT 60.992 60.000 0.00 0.00 0.00 4.79
738 739 0.472898 GTTACCCATGCCTACCCCTC 59.527 60.000 0.00 0.00 0.00 4.30
739 740 0.045008 TTACCCATGCCTACCCCTCA 59.955 55.000 0.00 0.00 0.00 3.86
740 741 0.045008 TACCCATGCCTACCCCTCAA 59.955 55.000 0.00 0.00 0.00 3.02
741 742 0.849094 ACCCATGCCTACCCCTCAAA 60.849 55.000 0.00 0.00 0.00 2.69
742 743 0.106519 CCCATGCCTACCCCTCAAAG 60.107 60.000 0.00 0.00 0.00 2.77
743 744 0.918983 CCATGCCTACCCCTCAAAGA 59.081 55.000 0.00 0.00 0.00 2.52
744 745 1.284785 CCATGCCTACCCCTCAAAGAA 59.715 52.381 0.00 0.00 0.00 2.52
745 746 2.291540 CCATGCCTACCCCTCAAAGAAA 60.292 50.000 0.00 0.00 0.00 2.52
746 747 3.430453 CATGCCTACCCCTCAAAGAAAA 58.570 45.455 0.00 0.00 0.00 2.29
747 748 3.603965 TGCCTACCCCTCAAAGAAAAA 57.396 42.857 0.00 0.00 0.00 1.94
784 785 3.463944 CATATTTAGGACCCGGACACAC 58.536 50.000 0.73 0.00 0.00 3.82
785 786 1.354101 ATTTAGGACCCGGACACACA 58.646 50.000 0.73 0.00 0.00 3.72
787 788 1.354101 TTAGGACCCGGACACACAAT 58.646 50.000 0.73 0.00 0.00 2.71
788 789 2.234896 TAGGACCCGGACACACAATA 57.765 50.000 0.73 0.00 0.00 1.90
789 790 1.354101 AGGACCCGGACACACAATAA 58.646 50.000 0.73 0.00 0.00 1.40
790 791 1.002773 AGGACCCGGACACACAATAAC 59.997 52.381 0.73 0.00 0.00 1.89
791 792 1.073177 GACCCGGACACACAATAACG 58.927 55.000 0.73 0.00 0.00 3.18
793 794 1.070445 ACCCGGACACACAATAACGAA 59.930 47.619 0.73 0.00 0.00 3.85
795 796 2.096119 CCCGGACACACAATAACGAAAC 60.096 50.000 0.73 0.00 0.00 2.78
908 913 1.370051 GCGCCGAGTCAAACAAACC 60.370 57.895 0.00 0.00 0.00 3.27
909 914 1.782028 GCGCCGAGTCAAACAAACCT 61.782 55.000 0.00 0.00 0.00 3.50
910 915 0.234884 CGCCGAGTCAAACAAACCTC 59.765 55.000 0.00 0.00 0.00 3.85
1479 1505 1.297012 GCTCTACAGCGACGACGAG 60.297 63.158 12.29 5.04 42.66 4.18
1481 1507 1.079612 TCTACAGCGACGACGAGGA 60.080 57.895 12.29 0.00 42.66 3.71
1576 1629 3.315880 AGAACTAACTAGGATCGGGCT 57.684 47.619 0.00 0.00 0.00 5.19
1581 1634 0.618458 AACTAGGATCGGGCTTTGCA 59.382 50.000 0.00 0.00 0.00 4.08
1582 1635 0.618458 ACTAGGATCGGGCTTTGCAA 59.382 50.000 0.00 0.00 0.00 4.08
1583 1636 1.212935 ACTAGGATCGGGCTTTGCAAT 59.787 47.619 0.00 0.00 0.00 3.56
1618 1671 3.480470 CAGAGGATTCGGGTTGCATAAT 58.520 45.455 0.00 0.00 0.00 1.28
1621 1674 5.707298 CAGAGGATTCGGGTTGCATAATTAT 59.293 40.000 0.00 0.00 0.00 1.28
1680 1737 0.601576 TGATACGTGTTGCGCCTGTT 60.602 50.000 4.18 0.00 46.11 3.16
1693 1750 2.737679 GCGCCTGTTTACCGTTCTCTAT 60.738 50.000 0.00 0.00 0.00 1.98
1694 1751 2.858344 CGCCTGTTTACCGTTCTCTATG 59.142 50.000 0.00 0.00 0.00 2.23
1695 1752 3.675228 CGCCTGTTTACCGTTCTCTATGT 60.675 47.826 0.00 0.00 0.00 2.29
1696 1753 3.617263 GCCTGTTTACCGTTCTCTATGTG 59.383 47.826 0.00 0.00 0.00 3.21
1697 1754 4.817517 CCTGTTTACCGTTCTCTATGTGT 58.182 43.478 0.00 0.00 0.00 3.72
1698 1755 4.625742 CCTGTTTACCGTTCTCTATGTGTG 59.374 45.833 0.00 0.00 0.00 3.82
1818 1875 5.569355 TCCATCCTTAAGCATGAAACTTGA 58.431 37.500 8.02 0.00 0.00 3.02
1873 1931 5.886474 TGTAAACAACCTGTGGTGAATTGTA 59.114 36.000 0.00 0.00 35.34 2.41
1879 1937 3.149196 CCTGTGGTGAATTGTAGCAAGT 58.851 45.455 0.00 0.00 0.00 3.16
1899 1961 3.874543 AGTTGTTTGTGCAGTTATCGTCA 59.125 39.130 0.00 0.00 0.00 4.35
1925 1987 1.962807 TGTGCAGAATTTTCACCCCTG 59.037 47.619 0.00 0.00 0.00 4.45
2017 2084 5.007430 GTGATCAGTCATTTGTCTGCATAGG 59.993 44.000 0.00 0.00 36.60 2.57
2041 2108 5.237344 GGACACCTCATATAGTCATGTTTGC 59.763 44.000 0.00 0.00 32.79 3.68
2061 2128 3.513515 TGCATCATTTCCCACTAAAACCC 59.486 43.478 0.00 0.00 0.00 4.11
2080 2147 0.896019 CGACCCCTGAGTGTGACTCT 60.896 60.000 5.39 0.00 45.27 3.24
2094 2161 1.132849 TGACTCTGGAACCTCCTTGGA 60.133 52.381 0.00 0.00 37.46 3.53
2215 2282 5.578005 TTCTCCACTCCACTACTTAATCG 57.422 43.478 0.00 0.00 0.00 3.34
2281 2348 3.267812 TGGATGGCTCCATTTCTTCTCTT 59.732 43.478 2.53 0.00 46.95 2.85
2338 2413 5.220970 CCGACAATATAACACATTGGTTCCC 60.221 44.000 0.00 0.00 37.64 3.97
2374 2450 7.413446 TGATTTCTGATCCCCTTGAATTTACT 58.587 34.615 0.00 0.00 0.00 2.24
2444 2520 3.045634 TCTCTATGTGTATGGTTGGGGG 58.954 50.000 0.00 0.00 0.00 5.40
2467 2543 7.417342 GGGGCAAGAAATTGTATATGTGCTTTA 60.417 37.037 0.00 0.00 0.00 1.85
2563 2639 5.544176 TGGATTCTGTCTTCTGGTTCTTACT 59.456 40.000 0.00 0.00 0.00 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 5.826601 TGCTTCTCACATACACACAAAAA 57.173 34.783 0.00 0.00 0.00 1.94
54 55 6.389830 AATGCTTCTCACATACACACAAAA 57.610 33.333 0.00 0.00 0.00 2.44
55 56 6.389830 AAATGCTTCTCACATACACACAAA 57.610 33.333 0.00 0.00 0.00 2.83
56 57 6.262944 AGAAAATGCTTCTCACATACACACAA 59.737 34.615 0.00 0.00 0.00 3.33
57 58 5.764686 AGAAAATGCTTCTCACATACACACA 59.235 36.000 0.00 0.00 0.00 3.72
58 59 6.073058 TGAGAAAATGCTTCTCACATACACAC 60.073 38.462 11.68 0.00 46.95 3.82
59 60 5.997129 TGAGAAAATGCTTCTCACATACACA 59.003 36.000 11.68 0.00 46.95 3.72
60 61 6.486253 TGAGAAAATGCTTCTCACATACAC 57.514 37.500 11.68 0.00 46.95 2.90
68 69 8.976986 AAATGTGTATTGAGAAAATGCTTCTC 57.023 30.769 7.14 7.14 43.85 2.87
69 70 9.846248 GTAAATGTGTATTGAGAAAATGCTTCT 57.154 29.630 0.00 0.00 0.00 2.85
70 71 9.076596 GGTAAATGTGTATTGAGAAAATGCTTC 57.923 33.333 0.00 0.00 0.00 3.86
71 72 8.584157 TGGTAAATGTGTATTGAGAAAATGCTT 58.416 29.630 0.00 0.00 0.00 3.91
72 73 8.121305 TGGTAAATGTGTATTGAGAAAATGCT 57.879 30.769 0.00 0.00 0.00 3.79
73 74 8.647226 GTTGGTAAATGTGTATTGAGAAAATGC 58.353 33.333 0.00 0.00 0.00 3.56
74 75 9.912634 AGTTGGTAAATGTGTATTGAGAAAATG 57.087 29.630 0.00 0.00 0.00 2.32
77 78 9.959749 GAAAGTTGGTAAATGTGTATTGAGAAA 57.040 29.630 0.00 0.00 0.00 2.52
78 79 9.126151 TGAAAGTTGGTAAATGTGTATTGAGAA 57.874 29.630 0.00 0.00 0.00 2.87
79 80 8.684386 TGAAAGTTGGTAAATGTGTATTGAGA 57.316 30.769 0.00 0.00 0.00 3.27
80 81 9.912634 ATTGAAAGTTGGTAAATGTGTATTGAG 57.087 29.630 0.00 0.00 0.00 3.02
83 84 8.987890 GCAATTGAAAGTTGGTAAATGTGTATT 58.012 29.630 10.34 0.00 0.00 1.89
84 85 8.367156 AGCAATTGAAAGTTGGTAAATGTGTAT 58.633 29.630 10.34 0.00 35.71 2.29
85 86 7.721402 AGCAATTGAAAGTTGGTAAATGTGTA 58.279 30.769 10.34 0.00 35.71 2.90
86 87 6.581712 AGCAATTGAAAGTTGGTAAATGTGT 58.418 32.000 10.34 0.00 35.71 3.72
87 88 7.224362 TCAAGCAATTGAAAGTTGGTAAATGTG 59.776 33.333 10.34 0.00 36.38 3.21
88 89 7.271511 TCAAGCAATTGAAAGTTGGTAAATGT 58.728 30.769 10.34 0.00 36.38 2.71
89 90 7.712264 TCAAGCAATTGAAAGTTGGTAAATG 57.288 32.000 10.34 0.00 36.38 2.32
90 91 8.907222 AATCAAGCAATTGAAAGTTGGTAAAT 57.093 26.923 10.34 0.00 36.38 1.40
91 92 9.823647 TTAATCAAGCAATTGAAAGTTGGTAAA 57.176 25.926 10.34 0.52 36.38 2.01
92 93 9.255304 GTTAATCAAGCAATTGAAAGTTGGTAA 57.745 29.630 10.34 6.48 36.38 2.85
93 94 7.870445 GGTTAATCAAGCAATTGAAAGTTGGTA 59.130 33.333 10.34 1.40 36.38 3.25
94 95 6.705825 GGTTAATCAAGCAATTGAAAGTTGGT 59.294 34.615 10.34 0.05 38.80 3.67
95 96 6.930722 AGGTTAATCAAGCAATTGAAAGTTGG 59.069 34.615 10.34 0.00 34.50 3.77
96 97 7.951530 AGGTTAATCAAGCAATTGAAAGTTG 57.048 32.000 10.34 6.76 34.50 3.16
193 194 9.457110 GGTTTCATGTTTTTGTTTTCAAGTTTT 57.543 25.926 0.00 0.00 41.09 2.43
194 195 8.079203 GGGTTTCATGTTTTTGTTTTCAAGTTT 58.921 29.630 0.00 0.00 41.09 2.66
195 196 7.308891 GGGGTTTCATGTTTTTGTTTTCAAGTT 60.309 33.333 0.00 0.00 41.09 2.66
196 197 6.150307 GGGGTTTCATGTTTTTGTTTTCAAGT 59.850 34.615 0.00 0.00 41.09 3.16
197 198 6.404184 GGGGGTTTCATGTTTTTGTTTTCAAG 60.404 38.462 0.00 0.00 41.09 3.02
198 199 5.416013 GGGGGTTTCATGTTTTTGTTTTCAA 59.584 36.000 0.00 0.00 38.10 2.69
199 200 4.944317 GGGGGTTTCATGTTTTTGTTTTCA 59.056 37.500 0.00 0.00 0.00 2.69
200 201 5.493133 GGGGGTTTCATGTTTTTGTTTTC 57.507 39.130 0.00 0.00 0.00 2.29
219 220 1.818674 CAACCTCGAATTTTCTGGGGG 59.181 52.381 6.19 0.00 0.00 5.40
220 221 2.228822 CACAACCTCGAATTTTCTGGGG 59.771 50.000 0.00 1.24 0.00 4.96
221 222 2.228822 CCACAACCTCGAATTTTCTGGG 59.771 50.000 0.00 0.00 0.00 4.45
222 223 2.351738 GCCACAACCTCGAATTTTCTGG 60.352 50.000 0.00 0.00 0.00 3.86
223 224 2.554032 AGCCACAACCTCGAATTTTCTG 59.446 45.455 0.00 0.00 0.00 3.02
224 225 2.863809 AGCCACAACCTCGAATTTTCT 58.136 42.857 0.00 0.00 0.00 2.52
225 226 3.643159 AAGCCACAACCTCGAATTTTC 57.357 42.857 0.00 0.00 0.00 2.29
226 227 3.550030 CGAAAGCCACAACCTCGAATTTT 60.550 43.478 0.00 0.00 0.00 1.82
227 228 2.031157 CGAAAGCCACAACCTCGAATTT 60.031 45.455 0.00 0.00 0.00 1.82
228 229 1.535462 CGAAAGCCACAACCTCGAATT 59.465 47.619 0.00 0.00 0.00 2.17
229 230 1.156736 CGAAAGCCACAACCTCGAAT 58.843 50.000 0.00 0.00 0.00 3.34
230 231 0.882927 CCGAAAGCCACAACCTCGAA 60.883 55.000 0.00 0.00 0.00 3.71
231 232 1.301401 CCGAAAGCCACAACCTCGA 60.301 57.895 0.00 0.00 0.00 4.04
232 233 1.597027 ACCGAAAGCCACAACCTCG 60.597 57.895 0.00 0.00 0.00 4.63
233 234 0.534203 TCACCGAAAGCCACAACCTC 60.534 55.000 0.00 0.00 0.00 3.85
234 235 0.535102 CTCACCGAAAGCCACAACCT 60.535 55.000 0.00 0.00 0.00 3.50
235 236 1.949257 CTCACCGAAAGCCACAACC 59.051 57.895 0.00 0.00 0.00 3.77
236 237 1.166531 AGCTCACCGAAAGCCACAAC 61.167 55.000 0.00 0.00 40.75 3.32
237 238 1.148273 AGCTCACCGAAAGCCACAA 59.852 52.632 0.00 0.00 40.75 3.33
238 239 1.597854 CAGCTCACCGAAAGCCACA 60.598 57.895 0.00 0.00 40.75 4.17
239 240 2.328099 CCAGCTCACCGAAAGCCAC 61.328 63.158 0.00 0.00 40.75 5.01
240 241 2.032528 CCAGCTCACCGAAAGCCA 59.967 61.111 0.00 0.00 40.75 4.75
241 242 2.747855 CCCAGCTCACCGAAAGCC 60.748 66.667 0.00 0.00 40.75 4.35
242 243 3.435186 GCCCAGCTCACCGAAAGC 61.435 66.667 0.00 0.00 40.14 3.51
243 244 2.747855 GGCCCAGCTCACCGAAAG 60.748 66.667 0.00 0.00 0.00 2.62
244 245 3.551496 CTGGCCCAGCTCACCGAAA 62.551 63.158 0.00 0.00 0.00 3.46
245 246 4.020617 CTGGCCCAGCTCACCGAA 62.021 66.667 0.00 0.00 0.00 4.30
260 261 1.211969 GCAAGTGCCAGATGTGCTG 59.788 57.895 0.00 0.00 44.49 4.41
261 262 1.074423 AGCAAGTGCCAGATGTGCT 59.926 52.632 0.00 0.00 43.38 4.40
262 263 1.211969 CAGCAAGTGCCAGATGTGC 59.788 57.895 0.00 0.00 43.38 4.57
263 264 0.240145 CACAGCAAGTGCCAGATGTG 59.760 55.000 8.44 8.44 42.15 3.21
264 265 2.637521 CACAGCAAGTGCCAGATGT 58.362 52.632 0.00 0.00 42.15 3.06
273 274 2.356313 CCTCGCGTCACAGCAAGT 60.356 61.111 5.77 0.00 36.85 3.16
274 275 3.114616 CCCTCGCGTCACAGCAAG 61.115 66.667 5.77 0.00 36.85 4.01
275 276 3.454587 AACCCTCGCGTCACAGCAA 62.455 57.895 5.77 0.00 36.85 3.91
276 277 3.858868 GAACCCTCGCGTCACAGCA 62.859 63.158 5.77 0.00 36.85 4.41
277 278 3.112709 GAACCCTCGCGTCACAGC 61.113 66.667 5.77 0.00 0.00 4.40
278 279 2.432628 GGAACCCTCGCGTCACAG 60.433 66.667 5.77 0.00 0.00 3.66
291 292 4.061596 GCTTATAGTGAGATGCAGGGAAC 58.938 47.826 0.00 0.00 0.00 3.62
292 293 3.243873 CGCTTATAGTGAGATGCAGGGAA 60.244 47.826 0.00 0.00 0.00 3.97
293 294 2.297315 CGCTTATAGTGAGATGCAGGGA 59.703 50.000 0.00 0.00 0.00 4.20
294 295 2.297315 TCGCTTATAGTGAGATGCAGGG 59.703 50.000 0.00 0.00 30.20 4.45
295 296 3.650070 TCGCTTATAGTGAGATGCAGG 57.350 47.619 0.00 0.00 30.20 4.85
303 304 4.079970 CCCCTATGTCTCGCTTATAGTGA 58.920 47.826 0.00 0.00 33.14 3.41
304 305 3.367498 GCCCCTATGTCTCGCTTATAGTG 60.367 52.174 0.00 0.00 0.00 2.74
305 306 2.826725 GCCCCTATGTCTCGCTTATAGT 59.173 50.000 0.00 0.00 0.00 2.12
306 307 2.159366 CGCCCCTATGTCTCGCTTATAG 60.159 54.545 0.00 0.00 0.00 1.31
307 308 1.816835 CGCCCCTATGTCTCGCTTATA 59.183 52.381 0.00 0.00 0.00 0.98
308 309 0.603569 CGCCCCTATGTCTCGCTTAT 59.396 55.000 0.00 0.00 0.00 1.73
309 310 0.754217 ACGCCCCTATGTCTCGCTTA 60.754 55.000 0.00 0.00 0.00 3.09
310 311 2.017559 GACGCCCCTATGTCTCGCTT 62.018 60.000 0.00 0.00 32.37 4.68
311 312 2.442272 ACGCCCCTATGTCTCGCT 60.442 61.111 0.00 0.00 0.00 4.93
312 313 2.027751 GACGCCCCTATGTCTCGC 59.972 66.667 0.00 0.00 32.37 5.03
313 314 1.828660 AGGACGCCCCTATGTCTCG 60.829 63.158 0.00 0.00 45.48 4.04
314 315 1.742768 CAGGACGCCCCTATGTCTC 59.257 63.158 0.00 0.00 45.60 3.36
315 316 2.435693 GCAGGACGCCCCTATGTCT 61.436 63.158 0.00 0.00 45.60 3.41
316 317 2.109181 GCAGGACGCCCCTATGTC 59.891 66.667 0.00 0.00 45.60 3.06
325 326 1.003718 ACAAGGTAAGGCAGGACGC 60.004 57.895 0.00 0.00 41.28 5.19
326 327 0.320374 TGACAAGGTAAGGCAGGACG 59.680 55.000 0.00 0.00 0.00 4.79
327 328 2.359900 CATGACAAGGTAAGGCAGGAC 58.640 52.381 0.00 0.00 0.00 3.85
328 329 1.340017 GCATGACAAGGTAAGGCAGGA 60.340 52.381 0.00 0.00 0.00 3.86
329 330 1.098050 GCATGACAAGGTAAGGCAGG 58.902 55.000 0.00 0.00 0.00 4.85
330 331 2.119801 AGCATGACAAGGTAAGGCAG 57.880 50.000 0.00 0.00 0.00 4.85
331 332 2.557924 CAAAGCATGACAAGGTAAGGCA 59.442 45.455 0.00 0.00 0.00 4.75
332 333 2.672195 GCAAAGCATGACAAGGTAAGGC 60.672 50.000 0.00 0.00 0.00 4.35
333 334 2.821969 AGCAAAGCATGACAAGGTAAGG 59.178 45.455 0.00 0.00 0.00 2.69
334 335 3.366679 CCAGCAAAGCATGACAAGGTAAG 60.367 47.826 0.00 0.00 0.00 2.34
335 336 2.557924 CCAGCAAAGCATGACAAGGTAA 59.442 45.455 0.00 0.00 0.00 2.85
336 337 2.161855 CCAGCAAAGCATGACAAGGTA 58.838 47.619 0.00 0.00 0.00 3.08
337 338 0.963962 CCAGCAAAGCATGACAAGGT 59.036 50.000 0.00 0.00 0.00 3.50
338 339 0.389426 GCCAGCAAAGCATGACAAGG 60.389 55.000 0.00 0.00 0.00 3.61
339 340 0.601558 AGCCAGCAAAGCATGACAAG 59.398 50.000 0.00 0.00 0.00 3.16
340 341 1.042229 AAGCCAGCAAAGCATGACAA 58.958 45.000 0.00 0.00 0.00 3.18
341 342 1.042229 AAAGCCAGCAAAGCATGACA 58.958 45.000 0.00 0.00 0.00 3.58
342 343 1.796459 CAAAAGCCAGCAAAGCATGAC 59.204 47.619 0.00 0.00 0.00 3.06
343 344 1.270412 CCAAAAGCCAGCAAAGCATGA 60.270 47.619 0.00 0.00 0.00 3.07
344 345 1.153353 CCAAAAGCCAGCAAAGCATG 58.847 50.000 0.00 0.00 0.00 4.06
345 346 1.050204 TCCAAAAGCCAGCAAAGCAT 58.950 45.000 0.00 0.00 0.00 3.79
346 347 0.104671 GTCCAAAAGCCAGCAAAGCA 59.895 50.000 0.00 0.00 0.00 3.91
347 348 0.940991 CGTCCAAAAGCCAGCAAAGC 60.941 55.000 0.00 0.00 0.00 3.51
348 349 0.318955 CCGTCCAAAAGCCAGCAAAG 60.319 55.000 0.00 0.00 0.00 2.77
349 350 1.040339 ACCGTCCAAAAGCCAGCAAA 61.040 50.000 0.00 0.00 0.00 3.68
350 351 1.454847 ACCGTCCAAAAGCCAGCAA 60.455 52.632 0.00 0.00 0.00 3.91
351 352 2.192861 CACCGTCCAAAAGCCAGCA 61.193 57.895 0.00 0.00 0.00 4.41
352 353 2.644992 CACCGTCCAAAAGCCAGC 59.355 61.111 0.00 0.00 0.00 4.85
353 354 1.455383 AAGCACCGTCCAAAAGCCAG 61.455 55.000 0.00 0.00 0.00 4.85
354 355 0.179015 TAAGCACCGTCCAAAAGCCA 60.179 50.000 0.00 0.00 0.00 4.75
355 356 1.173913 ATAAGCACCGTCCAAAAGCC 58.826 50.000 0.00 0.00 0.00 4.35
356 357 4.428615 TTTATAAGCACCGTCCAAAAGC 57.571 40.909 0.00 0.00 0.00 3.51
357 358 6.443792 ACTTTTTATAAGCACCGTCCAAAAG 58.556 36.000 0.00 0.00 36.49 2.27
358 359 6.394025 ACTTTTTATAAGCACCGTCCAAAA 57.606 33.333 0.00 0.00 0.00 2.44
359 360 5.048573 GGACTTTTTATAAGCACCGTCCAAA 60.049 40.000 12.62 0.00 39.47 3.28
360 361 4.456566 GGACTTTTTATAAGCACCGTCCAA 59.543 41.667 12.62 0.00 39.47 3.53
361 362 4.004982 GGACTTTTTATAAGCACCGTCCA 58.995 43.478 12.62 0.00 39.47 4.02
362 363 3.376234 GGGACTTTTTATAAGCACCGTCC 59.624 47.826 0.00 0.00 39.08 4.79
363 364 4.004982 TGGGACTTTTTATAAGCACCGTC 58.995 43.478 0.00 0.00 0.00 4.79
364 365 4.007659 CTGGGACTTTTTATAAGCACCGT 58.992 43.478 0.00 0.00 0.00 4.83
365 366 4.094442 GTCTGGGACTTTTTATAAGCACCG 59.906 45.833 0.00 0.00 0.00 4.94
366 367 5.254115 AGTCTGGGACTTTTTATAAGCACC 58.746 41.667 0.00 0.00 40.28 5.01
367 368 6.037281 GCTAGTCTGGGACTTTTTATAAGCAC 59.963 42.308 5.50 0.00 40.28 4.40
368 369 6.113411 GCTAGTCTGGGACTTTTTATAAGCA 58.887 40.000 5.50 0.00 40.28 3.91
369 370 6.113411 TGCTAGTCTGGGACTTTTTATAAGC 58.887 40.000 5.50 7.30 40.28 3.09
370 371 8.561738 TTTGCTAGTCTGGGACTTTTTATAAG 57.438 34.615 5.50 0.00 40.28 1.73
371 372 8.927675 TTTTGCTAGTCTGGGACTTTTTATAA 57.072 30.769 5.50 0.00 40.28 0.98
372 373 8.927675 TTTTTGCTAGTCTGGGACTTTTTATA 57.072 30.769 5.50 0.00 40.28 0.98
373 374 7.833285 TTTTTGCTAGTCTGGGACTTTTTAT 57.167 32.000 5.50 0.00 40.28 1.40
395 396 3.055167 GGGTGGGCTTAAGATGCATTTTT 60.055 43.478 7.89 5.30 0.00 1.94
396 397 2.501316 GGGTGGGCTTAAGATGCATTTT 59.499 45.455 6.67 7.70 0.00 1.82
397 398 2.110578 GGGTGGGCTTAAGATGCATTT 58.889 47.619 6.67 0.00 0.00 2.32
398 399 1.780503 GGGTGGGCTTAAGATGCATT 58.219 50.000 6.67 0.00 0.00 3.56
399 400 0.466189 CGGGTGGGCTTAAGATGCAT 60.466 55.000 6.67 0.00 0.00 3.96
400 401 1.077787 CGGGTGGGCTTAAGATGCA 60.078 57.895 6.67 0.00 0.00 3.96
401 402 1.823899 CCGGGTGGGCTTAAGATGC 60.824 63.158 6.67 0.00 0.00 3.91
402 403 4.559502 CCGGGTGGGCTTAAGATG 57.440 61.111 6.67 0.00 0.00 2.90
412 413 4.410400 GGCTTGTCTCCCGGGTGG 62.410 72.222 22.86 15.04 0.00 4.61
413 414 3.612247 CTGGCTTGTCTCCCGGGTG 62.612 68.421 22.86 19.64 0.00 4.61
414 415 3.322466 CTGGCTTGTCTCCCGGGT 61.322 66.667 22.86 0.00 0.00 5.28
415 416 3.003173 TCTGGCTTGTCTCCCGGG 61.003 66.667 16.85 16.85 0.00 5.73
416 417 2.266055 GTCTGGCTTGTCTCCCGG 59.734 66.667 0.00 0.00 0.00 5.73
417 418 2.266055 GGTCTGGCTTGTCTCCCG 59.734 66.667 0.00 0.00 0.00 5.14
418 419 1.904990 GAGGGTCTGGCTTGTCTCCC 61.905 65.000 0.00 0.00 35.56 4.30
419 420 0.907230 AGAGGGTCTGGCTTGTCTCC 60.907 60.000 0.00 0.00 0.00 3.71
420 421 0.534873 GAGAGGGTCTGGCTTGTCTC 59.465 60.000 0.00 0.00 0.00 3.36
421 422 0.907230 GGAGAGGGTCTGGCTTGTCT 60.907 60.000 0.00 0.00 0.00 3.41
422 423 1.194781 TGGAGAGGGTCTGGCTTGTC 61.195 60.000 0.00 0.00 0.00 3.18
423 424 1.152030 TGGAGAGGGTCTGGCTTGT 60.152 57.895 0.00 0.00 0.00 3.16
424 425 1.601171 CTGGAGAGGGTCTGGCTTG 59.399 63.158 0.00 0.00 0.00 4.01
425 426 1.614824 CCTGGAGAGGGTCTGGCTT 60.615 63.158 0.00 0.00 35.40 4.35
426 427 2.040278 CCTGGAGAGGGTCTGGCT 59.960 66.667 0.00 0.00 35.40 4.75
427 428 2.039624 TCCTGGAGAGGGTCTGGC 59.960 66.667 0.00 0.00 40.25 4.85
428 429 1.687493 GGTCCTGGAGAGGGTCTGG 60.687 68.421 0.00 0.00 40.25 3.86
429 430 2.055042 CGGTCCTGGAGAGGGTCTG 61.055 68.421 0.00 0.00 40.25 3.51
430 431 2.360980 CGGTCCTGGAGAGGGTCT 59.639 66.667 0.00 0.00 40.25 3.85
431 432 2.760385 CCGGTCCTGGAGAGGGTC 60.760 72.222 0.00 0.00 40.25 4.46
432 433 4.400251 CCCGGTCCTGGAGAGGGT 62.400 72.222 22.13 0.00 40.25 4.34
434 435 2.760385 GACCCGGTCCTGGAGAGG 60.760 72.222 6.25 3.28 41.39 3.69
435 436 3.141488 CGACCCGGTCCTGGAGAG 61.141 72.222 12.16 0.00 0.00 3.20
436 437 3.933048 GACGACCCGGTCCTGGAGA 62.933 68.421 12.16 0.00 0.00 3.71
437 438 3.450115 GACGACCCGGTCCTGGAG 61.450 72.222 12.16 2.46 0.00 3.86
463 464 0.888619 TAGATATTCTCCCCGCGCAG 59.111 55.000 8.75 0.00 0.00 5.18
464 465 0.888619 CTAGATATTCTCCCCGCGCA 59.111 55.000 8.75 0.00 0.00 6.09
465 466 0.889306 ACTAGATATTCTCCCCGCGC 59.111 55.000 0.00 0.00 0.00 6.86
466 467 1.402984 GCACTAGATATTCTCCCCGCG 60.403 57.143 0.00 0.00 0.00 6.46
467 468 1.896465 AGCACTAGATATTCTCCCCGC 59.104 52.381 0.00 0.00 0.00 6.13
468 469 3.366476 CGAAGCACTAGATATTCTCCCCG 60.366 52.174 0.00 0.00 0.00 5.73
469 470 3.056465 CCGAAGCACTAGATATTCTCCCC 60.056 52.174 0.00 0.00 0.00 4.81
470 471 3.615351 GCCGAAGCACTAGATATTCTCCC 60.615 52.174 0.00 0.00 39.53 4.30
471 472 3.005897 TGCCGAAGCACTAGATATTCTCC 59.994 47.826 0.00 0.00 46.52 3.71
472 473 4.244425 TGCCGAAGCACTAGATATTCTC 57.756 45.455 0.00 0.00 46.52 2.87
493 494 3.142217 TGTATCTCTATAGCACCCAGGGT 59.858 47.826 4.76 4.76 35.62 4.34
494 495 3.766591 CTGTATCTCTATAGCACCCAGGG 59.233 52.174 2.85 2.85 0.00 4.45
495 496 3.194542 GCTGTATCTCTATAGCACCCAGG 59.805 52.174 0.00 0.00 40.67 4.45
496 497 3.829026 TGCTGTATCTCTATAGCACCCAG 59.171 47.826 0.00 0.00 44.29 4.45
497 498 3.844640 TGCTGTATCTCTATAGCACCCA 58.155 45.455 0.00 0.00 44.29 4.51
502 503 4.878971 TCTCGGATGCTGTATCTCTATAGC 59.121 45.833 5.72 0.00 41.18 2.97
503 504 5.007626 GCTCTCGGATGCTGTATCTCTATAG 59.992 48.000 5.72 0.00 36.03 1.31
504 505 4.878971 GCTCTCGGATGCTGTATCTCTATA 59.121 45.833 5.72 0.00 36.03 1.31
505 506 3.694072 GCTCTCGGATGCTGTATCTCTAT 59.306 47.826 5.72 0.00 36.03 1.98
506 507 3.078097 GCTCTCGGATGCTGTATCTCTA 58.922 50.000 5.72 0.00 36.03 2.43
507 508 1.885887 GCTCTCGGATGCTGTATCTCT 59.114 52.381 5.72 0.00 36.03 3.10
508 509 1.067915 GGCTCTCGGATGCTGTATCTC 60.068 57.143 5.72 0.00 36.03 2.75
509 510 0.965439 GGCTCTCGGATGCTGTATCT 59.035 55.000 5.72 0.00 36.03 1.98
510 511 0.387878 CGGCTCTCGGATGCTGTATC 60.388 60.000 0.00 0.00 34.75 2.24
511 512 1.109920 ACGGCTCTCGGATGCTGTAT 61.110 55.000 13.53 0.00 45.67 2.29
512 513 1.320344 AACGGCTCTCGGATGCTGTA 61.320 55.000 14.90 0.00 46.65 2.74
513 514 3.071206 ACGGCTCTCGGATGCTGT 61.071 61.111 10.52 10.52 43.13 4.40
514 515 2.169789 CAACGGCTCTCGGATGCTG 61.170 63.158 9.47 9.47 44.45 4.41
515 516 2.185350 CAACGGCTCTCGGATGCT 59.815 61.111 0.00 0.00 44.45 3.79
516 517 2.650813 ATCCAACGGCTCTCGGATGC 62.651 60.000 0.00 0.00 44.45 3.91
517 518 0.598680 GATCCAACGGCTCTCGGATG 60.599 60.000 0.00 0.00 44.45 3.51
518 519 0.757188 AGATCCAACGGCTCTCGGAT 60.757 55.000 0.00 0.00 44.45 4.18
519 520 1.379977 AGATCCAACGGCTCTCGGA 60.380 57.895 0.00 0.00 44.45 4.55
520 521 1.227089 CAGATCCAACGGCTCTCGG 60.227 63.158 0.00 0.00 44.45 4.63
521 522 0.173481 TTCAGATCCAACGGCTCTCG 59.827 55.000 0.00 0.00 45.88 4.04
522 523 2.386661 TTTCAGATCCAACGGCTCTC 57.613 50.000 0.00 0.00 0.00 3.20
523 524 3.274288 GAATTTCAGATCCAACGGCTCT 58.726 45.455 0.00 0.00 0.00 4.09
524 525 3.009723 TGAATTTCAGATCCAACGGCTC 58.990 45.455 0.00 0.00 0.00 4.70
525 526 3.071874 TGAATTTCAGATCCAACGGCT 57.928 42.857 0.00 0.00 0.00 5.52
526 527 3.501950 GTTGAATTTCAGATCCAACGGC 58.498 45.455 0.00 0.00 0.00 5.68
529 530 3.673323 GCCCGTTGAATTTCAGATCCAAC 60.673 47.826 0.00 0.00 35.18 3.77
530 531 2.491693 GCCCGTTGAATTTCAGATCCAA 59.508 45.455 0.00 0.00 0.00 3.53
531 532 2.091541 GCCCGTTGAATTTCAGATCCA 58.908 47.619 0.00 0.00 0.00 3.41
532 533 2.356069 GAGCCCGTTGAATTTCAGATCC 59.644 50.000 0.00 0.00 0.00 3.36
533 534 2.356069 GGAGCCCGTTGAATTTCAGATC 59.644 50.000 0.00 0.00 0.00 2.75
534 535 2.369394 GGAGCCCGTTGAATTTCAGAT 58.631 47.619 0.00 0.00 0.00 2.90
535 536 1.613255 GGGAGCCCGTTGAATTTCAGA 60.613 52.381 0.00 0.00 0.00 3.27
536 537 0.811281 GGGAGCCCGTTGAATTTCAG 59.189 55.000 0.00 0.00 0.00 3.02
537 538 2.955609 GGGAGCCCGTTGAATTTCA 58.044 52.632 0.00 0.00 0.00 2.69
548 549 1.921869 TTCAGAATTCCCGGGAGCCC 61.922 60.000 25.26 16.01 0.00 5.19
549 550 0.034477 TTTCAGAATTCCCGGGAGCC 60.034 55.000 25.26 16.38 0.00 4.70
550 551 1.095600 GTTTCAGAATTCCCGGGAGC 58.904 55.000 25.26 17.08 0.00 4.70
551 552 2.489938 TGTTTCAGAATTCCCGGGAG 57.510 50.000 25.26 12.20 0.00 4.30
552 553 3.449746 AATGTTTCAGAATTCCCGGGA 57.550 42.857 22.63 22.63 0.00 5.14
553 554 4.244862 CAAAATGTTTCAGAATTCCCGGG 58.755 43.478 16.85 16.85 0.00 5.73
554 555 3.679502 GCAAAATGTTTCAGAATTCCCGG 59.320 43.478 0.65 0.00 0.00 5.73
555 556 4.305769 TGCAAAATGTTTCAGAATTCCCG 58.694 39.130 0.65 0.00 0.00 5.14
556 557 6.616774 TTTGCAAAATGTTTCAGAATTCCC 57.383 33.333 10.02 0.00 0.00 3.97
557 558 7.166307 GCTTTTTGCAAAATGTTTCAGAATTCC 59.834 33.333 28.31 11.48 42.31 3.01
558 559 7.166307 GGCTTTTTGCAAAATGTTTCAGAATTC 59.834 33.333 28.31 14.07 45.15 2.17
559 560 6.974048 GGCTTTTTGCAAAATGTTTCAGAATT 59.026 30.769 28.31 0.00 45.15 2.17
560 561 6.095160 TGGCTTTTTGCAAAATGTTTCAGAAT 59.905 30.769 28.31 0.00 45.15 2.40
561 562 5.413833 TGGCTTTTTGCAAAATGTTTCAGAA 59.586 32.000 28.31 11.70 45.15 3.02
562 563 4.940046 TGGCTTTTTGCAAAATGTTTCAGA 59.060 33.333 28.31 12.28 45.15 3.27
563 564 5.232610 TGGCTTTTTGCAAAATGTTTCAG 57.767 34.783 28.31 20.92 45.15 3.02
564 565 5.831702 ATGGCTTTTTGCAAAATGTTTCA 57.168 30.435 28.31 24.06 45.15 2.69
565 566 8.127954 TCTAAATGGCTTTTTGCAAAATGTTTC 58.872 29.630 28.31 20.87 45.15 2.78
566 567 7.994194 TCTAAATGGCTTTTTGCAAAATGTTT 58.006 26.923 28.31 23.51 45.15 2.83
567 568 7.565323 TCTAAATGGCTTTTTGCAAAATGTT 57.435 28.000 28.31 20.25 45.15 2.71
568 569 7.282901 ACTTCTAAATGGCTTTTTGCAAAATGT 59.717 29.630 28.31 16.57 45.15 2.71
569 570 7.641760 ACTTCTAAATGGCTTTTTGCAAAATG 58.358 30.769 24.39 25.08 45.15 2.32
570 571 7.041167 GGACTTCTAAATGGCTTTTTGCAAAAT 60.041 33.333 24.39 10.83 45.15 1.82
571 572 6.259829 GGACTTCTAAATGGCTTTTTGCAAAA 59.740 34.615 20.46 20.46 45.15 2.44
572 573 5.757808 GGACTTCTAAATGGCTTTTTGCAAA 59.242 36.000 8.05 8.05 45.15 3.68
573 574 5.296748 GGACTTCTAAATGGCTTTTTGCAA 58.703 37.500 3.54 0.00 45.15 4.08
574 575 4.558496 CGGACTTCTAAATGGCTTTTTGCA 60.558 41.667 3.54 0.00 45.15 4.08
575 576 3.920412 CGGACTTCTAAATGGCTTTTTGC 59.080 43.478 3.54 0.00 41.94 3.68
576 577 5.371115 TCGGACTTCTAAATGGCTTTTTG 57.629 39.130 3.54 2.59 0.00 2.44
577 578 7.696992 TTATCGGACTTCTAAATGGCTTTTT 57.303 32.000 3.54 0.00 0.00 1.94
578 579 7.881775 ATTATCGGACTTCTAAATGGCTTTT 57.118 32.000 3.72 3.72 0.00 2.27
579 580 7.881775 AATTATCGGACTTCTAAATGGCTTT 57.118 32.000 0.00 0.00 0.00 3.51
580 581 7.661847 CCTAATTATCGGACTTCTAAATGGCTT 59.338 37.037 0.00 0.00 0.00 4.35
581 582 7.162082 CCTAATTATCGGACTTCTAAATGGCT 58.838 38.462 0.00 0.00 0.00 4.75
582 583 6.128254 GCCTAATTATCGGACTTCTAAATGGC 60.128 42.308 0.00 0.00 0.00 4.40
583 584 6.934645 TGCCTAATTATCGGACTTCTAAATGG 59.065 38.462 0.00 0.00 0.00 3.16
584 585 7.962964 TGCCTAATTATCGGACTTCTAAATG 57.037 36.000 0.00 0.00 0.00 2.32
585 586 9.654663 GTATGCCTAATTATCGGACTTCTAAAT 57.345 33.333 0.00 0.00 0.00 1.40
586 587 8.644216 TGTATGCCTAATTATCGGACTTCTAAA 58.356 33.333 0.00 0.00 0.00 1.85
587 588 8.185506 TGTATGCCTAATTATCGGACTTCTAA 57.814 34.615 0.00 0.00 0.00 2.10
588 589 7.770366 TGTATGCCTAATTATCGGACTTCTA 57.230 36.000 0.00 0.00 0.00 2.10
589 590 6.665992 TGTATGCCTAATTATCGGACTTCT 57.334 37.500 0.00 0.00 0.00 2.85
590 591 7.602644 TGAATGTATGCCTAATTATCGGACTTC 59.397 37.037 0.00 0.00 0.00 3.01
591 592 7.450074 TGAATGTATGCCTAATTATCGGACTT 58.550 34.615 0.00 0.00 0.00 3.01
592 593 7.004555 TGAATGTATGCCTAATTATCGGACT 57.995 36.000 0.00 0.00 0.00 3.85
593 594 6.183360 GCTGAATGTATGCCTAATTATCGGAC 60.183 42.308 0.00 0.00 0.00 4.79
594 595 5.874810 GCTGAATGTATGCCTAATTATCGGA 59.125 40.000 0.00 0.00 0.00 4.55
595 596 5.643348 TGCTGAATGTATGCCTAATTATCGG 59.357 40.000 0.00 0.00 0.00 4.18
596 597 6.726258 TGCTGAATGTATGCCTAATTATCG 57.274 37.500 0.00 0.00 0.00 2.92
597 598 9.565213 GATTTGCTGAATGTATGCCTAATTATC 57.435 33.333 0.00 0.00 0.00 1.75
598 599 8.526147 GGATTTGCTGAATGTATGCCTAATTAT 58.474 33.333 0.00 0.00 0.00 1.28
599 600 7.505248 TGGATTTGCTGAATGTATGCCTAATTA 59.495 33.333 0.00 0.00 0.00 1.40
600 601 6.324512 TGGATTTGCTGAATGTATGCCTAATT 59.675 34.615 0.00 0.00 0.00 1.40
601 602 5.834742 TGGATTTGCTGAATGTATGCCTAAT 59.165 36.000 0.00 0.00 0.00 1.73
602 603 5.199723 TGGATTTGCTGAATGTATGCCTAA 58.800 37.500 0.00 0.00 0.00 2.69
603 604 4.790937 TGGATTTGCTGAATGTATGCCTA 58.209 39.130 0.00 0.00 0.00 3.93
604 605 3.634504 TGGATTTGCTGAATGTATGCCT 58.365 40.909 0.00 0.00 0.00 4.75
605 606 3.797865 GCTGGATTTGCTGAATGTATGCC 60.798 47.826 0.00 0.00 0.00 4.40
606 607 3.181484 TGCTGGATTTGCTGAATGTATGC 60.181 43.478 0.00 0.00 0.00 3.14
607 608 4.642445 TGCTGGATTTGCTGAATGTATG 57.358 40.909 0.00 0.00 0.00 2.39
608 609 4.708421 AGTTGCTGGATTTGCTGAATGTAT 59.292 37.500 0.00 0.00 0.00 2.29
609 610 4.081406 AGTTGCTGGATTTGCTGAATGTA 58.919 39.130 0.00 0.00 0.00 2.29
610 611 2.895404 AGTTGCTGGATTTGCTGAATGT 59.105 40.909 0.00 0.00 0.00 2.71
611 612 3.508762 GAGTTGCTGGATTTGCTGAATG 58.491 45.455 0.00 0.00 0.00 2.67
612 613 2.494870 GGAGTTGCTGGATTTGCTGAAT 59.505 45.455 0.00 0.00 0.00 2.57
613 614 1.888512 GGAGTTGCTGGATTTGCTGAA 59.111 47.619 0.00 0.00 0.00 3.02
614 615 1.538047 GGAGTTGCTGGATTTGCTGA 58.462 50.000 0.00 0.00 0.00 4.26
615 616 0.529378 GGGAGTTGCTGGATTTGCTG 59.471 55.000 0.00 0.00 0.00 4.41
616 617 0.112995 TGGGAGTTGCTGGATTTGCT 59.887 50.000 0.00 0.00 0.00 3.91
617 618 0.968405 TTGGGAGTTGCTGGATTTGC 59.032 50.000 0.00 0.00 0.00 3.68
618 619 3.967332 ATTTGGGAGTTGCTGGATTTG 57.033 42.857 0.00 0.00 0.00 2.32
619 620 3.769300 GGTATTTGGGAGTTGCTGGATTT 59.231 43.478 0.00 0.00 0.00 2.17
620 621 3.365472 GGTATTTGGGAGTTGCTGGATT 58.635 45.455 0.00 0.00 0.00 3.01
621 622 2.683742 CGGTATTTGGGAGTTGCTGGAT 60.684 50.000 0.00 0.00 0.00 3.41
622 623 1.339631 CGGTATTTGGGAGTTGCTGGA 60.340 52.381 0.00 0.00 0.00 3.86
623 624 1.094785 CGGTATTTGGGAGTTGCTGG 58.905 55.000 0.00 0.00 0.00 4.85
624 625 1.737793 GACGGTATTTGGGAGTTGCTG 59.262 52.381 0.00 0.00 0.00 4.41
625 626 1.339727 GGACGGTATTTGGGAGTTGCT 60.340 52.381 0.00 0.00 0.00 3.91
626 627 1.092348 GGACGGTATTTGGGAGTTGC 58.908 55.000 0.00 0.00 0.00 4.17
627 628 2.483014 TGGACGGTATTTGGGAGTTG 57.517 50.000 0.00 0.00 0.00 3.16
628 629 2.844348 AGATGGACGGTATTTGGGAGTT 59.156 45.455 0.00 0.00 0.00 3.01
629 630 2.170607 CAGATGGACGGTATTTGGGAGT 59.829 50.000 0.00 0.00 0.00 3.85
630 631 2.434336 TCAGATGGACGGTATTTGGGAG 59.566 50.000 0.00 0.00 0.00 4.30
631 632 2.473070 TCAGATGGACGGTATTTGGGA 58.527 47.619 0.00 0.00 0.00 4.37
632 633 3.492102 ATCAGATGGACGGTATTTGGG 57.508 47.619 0.00 0.00 0.00 4.12
633 634 4.315803 GGTATCAGATGGACGGTATTTGG 58.684 47.826 0.00 0.00 0.00 3.28
634 635 4.315803 GGGTATCAGATGGACGGTATTTG 58.684 47.826 0.00 0.00 0.00 2.32
635 636 3.006537 CGGGTATCAGATGGACGGTATTT 59.993 47.826 0.00 0.00 0.00 1.40
636 637 2.561419 CGGGTATCAGATGGACGGTATT 59.439 50.000 0.00 0.00 0.00 1.89
637 638 2.168496 CGGGTATCAGATGGACGGTAT 58.832 52.381 0.00 0.00 0.00 2.73
638 639 1.143481 TCGGGTATCAGATGGACGGTA 59.857 52.381 0.00 0.00 0.00 4.02
639 640 0.106369 TCGGGTATCAGATGGACGGT 60.106 55.000 0.00 0.00 0.00 4.83
640 641 1.067565 CATCGGGTATCAGATGGACGG 60.068 57.143 8.13 0.00 40.23 4.79
641 642 2.354109 CATCGGGTATCAGATGGACG 57.646 55.000 8.13 0.00 40.23 4.79
645 646 0.686789 TGGCCATCGGGTATCAGATG 59.313 55.000 0.00 8.97 42.71 2.90
646 647 0.979665 CTGGCCATCGGGTATCAGAT 59.020 55.000 5.51 0.00 36.17 2.90
647 648 1.121407 CCTGGCCATCGGGTATCAGA 61.121 60.000 5.51 0.00 37.13 3.27
648 649 1.121407 TCCTGGCCATCGGGTATCAG 61.121 60.000 5.51 0.00 42.62 2.90
649 650 1.074850 TCCTGGCCATCGGGTATCA 60.075 57.895 5.51 0.00 42.62 2.15
650 651 1.674057 CTCCTGGCCATCGGGTATC 59.326 63.158 5.51 0.00 42.62 2.24
651 652 2.520536 GCTCCTGGCCATCGGGTAT 61.521 63.158 5.51 0.00 42.62 2.73
652 653 3.161450 GCTCCTGGCCATCGGGTA 61.161 66.667 5.51 0.00 42.62 3.69
661 662 2.109181 GTGATACGGGCTCCTGGC 59.891 66.667 0.00 0.00 40.90 4.85
662 663 2.417516 CGTGATACGGGCTCCTGG 59.582 66.667 0.00 0.00 38.08 4.45
671 672 0.248907 CCAGGTGCTACCGTGATACG 60.249 60.000 0.00 0.00 44.90 3.06
672 673 0.104304 CCCAGGTGCTACCGTGATAC 59.896 60.000 0.00 0.00 44.90 2.24
673 674 0.324923 ACCCAGGTGCTACCGTGATA 60.325 55.000 0.00 0.00 44.90 2.15
674 675 1.612442 ACCCAGGTGCTACCGTGAT 60.612 57.895 0.00 0.00 44.90 3.06
675 676 2.203728 ACCCAGGTGCTACCGTGA 60.204 61.111 0.00 0.00 44.90 4.35
676 677 2.264794 GACCCAGGTGCTACCGTG 59.735 66.667 0.00 0.00 44.90 4.94
677 678 3.001406 GGACCCAGGTGCTACCGT 61.001 66.667 0.37 0.00 44.90 4.83
678 679 2.291043 AAGGACCCAGGTGCTACCG 61.291 63.158 11.59 0.00 45.93 4.02
679 680 1.299976 CAAGGACCCAGGTGCTACC 59.700 63.158 11.59 0.00 45.93 3.18
680 681 1.299976 CCAAGGACCCAGGTGCTAC 59.700 63.158 11.59 0.00 45.93 3.58
681 682 1.923395 CCCAAGGACCCAGGTGCTA 60.923 63.158 11.59 0.00 45.93 3.49
683 684 3.256960 TCCCAAGGACCCAGGTGC 61.257 66.667 0.00 0.00 36.69 5.01
684 685 2.606587 CCTCCCAAGGACCCAGGTG 61.607 68.421 0.00 0.00 46.67 4.00
685 686 2.204151 CCTCCCAAGGACCCAGGT 60.204 66.667 0.00 0.00 46.67 4.00
693 694 3.321950 AGAATATCTGGTCCTCCCAAGG 58.678 50.000 0.00 0.00 44.65 3.61
694 695 4.202409 GGAAGAATATCTGGTCCTCCCAAG 60.202 50.000 0.00 0.00 44.65 3.61
695 696 3.716872 GGAAGAATATCTGGTCCTCCCAA 59.283 47.826 0.00 0.00 44.65 4.12
696 697 3.318313 GGAAGAATATCTGGTCCTCCCA 58.682 50.000 0.00 0.00 42.51 4.37
697 698 2.300437 CGGAAGAATATCTGGTCCTCCC 59.700 54.545 0.00 0.00 0.00 4.30
698 699 2.300437 CCGGAAGAATATCTGGTCCTCC 59.700 54.545 0.00 0.00 40.42 4.30
699 700 3.669251 CCGGAAGAATATCTGGTCCTC 57.331 52.381 0.00 0.00 40.42 3.71
719 720 0.472898 GAGGGGTAGGCATGGGTAAC 59.527 60.000 0.00 0.00 0.00 2.50
720 721 0.045008 TGAGGGGTAGGCATGGGTAA 59.955 55.000 0.00 0.00 0.00 2.85
721 722 0.045008 TTGAGGGGTAGGCATGGGTA 59.955 55.000 0.00 0.00 0.00 3.69
722 723 0.849094 TTTGAGGGGTAGGCATGGGT 60.849 55.000 0.00 0.00 0.00 4.51
723 724 0.106519 CTTTGAGGGGTAGGCATGGG 60.107 60.000 0.00 0.00 0.00 4.00
724 725 0.918983 TCTTTGAGGGGTAGGCATGG 59.081 55.000 0.00 0.00 0.00 3.66
725 726 2.806945 TTCTTTGAGGGGTAGGCATG 57.193 50.000 0.00 0.00 0.00 4.06
726 727 3.825908 TTTTCTTTGAGGGGTAGGCAT 57.174 42.857 0.00 0.00 0.00 4.40
727 728 3.603965 TTTTTCTTTGAGGGGTAGGCA 57.396 42.857 0.00 0.00 0.00 4.75
754 755 3.436470 GGGTCCTAAATATGGGCATGTGT 60.436 47.826 0.00 0.00 0.00 3.72
756 757 2.224769 CGGGTCCTAAATATGGGCATGT 60.225 50.000 0.00 0.00 0.00 3.21
765 766 2.538222 TGTGTGTCCGGGTCCTAAATA 58.462 47.619 0.00 0.00 0.00 1.40
784 785 3.308866 GTCCTCGGATGGTTTCGTTATTG 59.691 47.826 0.00 0.00 0.00 1.90
785 786 3.528532 GTCCTCGGATGGTTTCGTTATT 58.471 45.455 0.00 0.00 0.00 1.40
787 788 1.205417 GGTCCTCGGATGGTTTCGTTA 59.795 52.381 0.00 0.00 0.00 3.18
788 789 0.036671 GGTCCTCGGATGGTTTCGTT 60.037 55.000 0.00 0.00 0.00 3.85
789 790 1.189524 TGGTCCTCGGATGGTTTCGT 61.190 55.000 0.00 0.00 0.00 3.85
790 791 0.036765 TTGGTCCTCGGATGGTTTCG 60.037 55.000 0.00 0.00 0.00 3.46
791 792 1.810755 GTTTGGTCCTCGGATGGTTTC 59.189 52.381 0.00 0.00 0.00 2.78
793 794 0.037734 GGTTTGGTCCTCGGATGGTT 59.962 55.000 0.00 0.00 0.00 3.67
795 796 1.449601 CGGTTTGGTCCTCGGATGG 60.450 63.158 0.00 0.00 0.00 3.51
841 846 0.108089 GGGCGGAAGAGTCTTCCTTC 60.108 60.000 37.25 29.63 39.32 3.46
908 913 1.295915 TGGGGATGGAATTGGGGGAG 61.296 60.000 0.00 0.00 0.00 4.30
909 914 0.633221 ATGGGGATGGAATTGGGGGA 60.633 55.000 0.00 0.00 0.00 4.81
910 915 0.268566 AATGGGGATGGAATTGGGGG 59.731 55.000 0.00 0.00 0.00 5.40
1576 1629 1.896339 CTGCCGACGACGATTGCAAA 61.896 55.000 9.28 0.00 42.66 3.68
1581 1634 3.989698 CTGCCTGCCGACGACGATT 62.990 63.158 9.28 0.00 42.66 3.34
1582 1635 4.498520 CTGCCTGCCGACGACGAT 62.499 66.667 9.28 0.00 42.66 3.73
1621 1674 9.656323 AGTATAAGAGTACTCCACAATTCCATA 57.344 33.333 19.38 0.72 28.99 2.74
1645 1698 6.150641 ACACGTATCATAGGTGCGAATATAGT 59.849 38.462 15.92 0.00 45.62 2.12
1646 1699 6.552629 ACACGTATCATAGGTGCGAATATAG 58.447 40.000 15.92 0.00 45.62 1.31
1680 1737 4.038282 ACACACACACATAGAGAACGGTAA 59.962 41.667 0.00 0.00 0.00 2.85
1693 1750 0.877743 CAACCACACACACACACACA 59.122 50.000 0.00 0.00 0.00 3.72
1694 1751 0.170116 CCAACCACACACACACACAC 59.830 55.000 0.00 0.00 0.00 3.82
1695 1752 0.962855 CCCAACCACACACACACACA 60.963 55.000 0.00 0.00 0.00 3.72
1696 1753 1.662438 CCCCAACCACACACACACAC 61.662 60.000 0.00 0.00 0.00 3.82
1697 1754 1.379176 CCCCAACCACACACACACA 60.379 57.895 0.00 0.00 0.00 3.72
1698 1755 1.077357 TCCCCAACCACACACACAC 60.077 57.895 0.00 0.00 0.00 3.82
1818 1875 4.301072 TTTACTAGGCAGCAGAAACCAT 57.699 40.909 0.00 0.00 0.00 3.55
1873 1931 4.610945 GATAACTGCACAAACAACTTGCT 58.389 39.130 0.00 0.00 38.75 3.91
1879 1937 3.002862 GGTGACGATAACTGCACAAACAA 59.997 43.478 0.00 0.00 33.09 2.83
1899 1961 3.305335 GGTGAAAATTCTGCACATTCGGT 60.305 43.478 0.00 0.00 34.33 4.69
1925 1987 1.405821 CACTCGACTGATACCCCTGTC 59.594 57.143 0.00 0.00 0.00 3.51
1974 2041 4.878968 TCACTCCAGGATTATCTACACCA 58.121 43.478 0.00 0.00 0.00 4.17
2017 2084 5.237344 GCAAACATGACTATATGAGGTGTCC 59.763 44.000 0.00 0.00 0.00 4.02
2041 2108 4.013728 TCGGGTTTTAGTGGGAAATGATG 58.986 43.478 0.00 0.00 0.00 3.07
2061 2128 1.587054 GAGTCACACTCAGGGGTCG 59.413 63.158 0.00 0.00 44.45 4.79
2080 2147 2.092429 GCATACATCCAAGGAGGTTCCA 60.092 50.000 11.99 0.00 39.61 3.53
2094 2161 4.525487 CCTAATTGGAAGCCATGCATACAT 59.475 41.667 0.00 0.00 38.35 2.29
2215 2282 2.093658 TCATTTCAGGAGTAGGTTCCGC 60.094 50.000 0.00 0.00 42.29 5.54
2281 2348 6.239944 CCGTTATTAATATGGGTCAGGGGTAA 60.240 42.308 0.00 0.00 0.00 2.85
2374 2450 6.952358 GGACAGTATATTACTATGGGTCAGGA 59.048 42.308 0.00 0.00 37.23 3.86
2467 2543 8.701908 AAATGACCATATGCAAGAACAGATAT 57.298 30.769 0.00 0.00 0.00 1.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.