>input_sequence_75828
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--------------------------------------------------------ATGGCCGCCGCC---TGCCGCGCC
CTGCTGCTCCTCCTCGCCGCCGCCGCGGTGGCCCTCCTCGCGGCGCCCCCGGCGGCCGCCGCCCGCCCCTGCGGCCGCGC
GCAGACGCTGCTCATCTCCTTCTCCTCCTTCTCCCGCCCCAACCCGGACCCGGCCGACCCCTCGCCGCTCACCACCACCG
TCGTCACCGTCCTCCGCGTCCGCCGCCTCGGCCCGCACCGCTTCCACGCCCACGACCAGAACCACCTCCAGATCCGCCGC
CCCGCCGAGTCCCTCCCCGCCGTCGGCACCCCCGAGA------CCGACGCCGACGCCGCCTCCTCCTTCCAGGAGCGCGC
CAAGGACATCCTCGTCGTCGTCTCGGGCCTGCTCTTCGGCTTCGGCTGCGGCGCCCTCACCGCCGCCTCCATGTACCTCG
TCTGGTCCCTCGTCGCCTCCACCGGCGCCGCCAGCCCCTACGAGGAGCTCTACAGCGACGACGAGGA-------------
--------CGACGACGGCGCCGAGAGCCCCAAGAAGGCCGGCTACGTCATCATCCACGGCGCCGAGGACGTCGTCGCCG-
-----GTAAGAACTAA----------------------------------------------------------------
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>chr5A_1_TraesCS5A01G553700
CAAATGCATGATTAACATTTTTTAAATACATGATCAAATTTTTTCATGCACATTTTTTGTGTGTATGTGAGAAGCATTTT
CTCAATACACATTTACCAACTTTCAATTGCTTGATTAACCTTAAACTTTTTTTGCAATTTTTTAAATGCAAAGTGTTTTT
TGTAATATATTTGTTTAGAATATTTGGATGTAAAAAACTTGAAAACAAAAACATGAAACCCCCCAGAAAATTCGAGGTTG
TGGCTTTCGGTGAGCTGGGCCAGCACATCTGGCACTTGCTGTGACGCGAGGGTTCCCTGCATCTCACTATAAGCGAGACA
TAGGGGCGTCCTGCCTTACCTTGTCATGCTTTGCTGGCTTTTGGACGGTGCTTATAAAAAGTCCCAGACTAGCAAAAAAA
TGCATCTTAAGCCCACCCGGGAGACAAGCCAGACCCTCTCCAGGACCGGGTCGTCGGGCCTTGCTGCGCGGGGAGAATAT
CTAGTGCTTCGGCACCCTGGGTGCTATAGAGATACAGCATCCGAGAGCCGTTGGATCTGAAATTCAACGGGCTCCCGGGA
ATTCTGAAACATTTTGCAAAAAGCCATTTAGAAGTCCGATAATTAGGCATACATTCAGCAAATCCAGCAACTCCCAAATA
CCGTCCATCTGATACCCGATGGCCAGGAGCCCGTATCACGGTAGCACCTGGGTCCTTGGGAGGACCAGATATTCTTCCGG
TTACCCATGCCTACCCCTCAAAGAAAAAAAGGCTACACATGCCCATATTTAGGACCCGGACACACAATAACGAAACCATC
CGAGGACCAAACCGCAAAAC----CTCCCCCTCCCGTCGGCCAAGGAAGGAAGACTCTTCCGCCCGATAAAGCATCGGAA
GTCTCCTCCCCACCGCGCCGAGTCAAACAAACCTC---CCCCAATTCCATCCCCATTCCC-----CAAAATTTTCCCCAC
CGGCGACGACGCCCTCCCCAAATCCGATCCGCCG----CCGCCGTTGACGCCAGCCATGGCCGCCGCC---TGCCGCGCC
CTGCTGCTCCTCCTCGCCGCCGCCGCGGTGGCCCTCCTCGCGGCGCCCCCGGCGGCCGCCGCCCGCCCCTGCGGCCGCGC
GCAGACGCTGCTCATCTCCTTCTCCTCCTTCTCCCGCCCCAACCCGGACCCGGCCGACCCCTCGCCGCTCACCACCACCG
TCGTCACCGTCCTCCGCGTCCGCCGCCTCGGCCCGCACCGCTTCCACGCCCACGACCAGAACCACCTCCAGATCCGCCGC
CCCGCCGAGTCCCTCCCCGCCGTCGGCACCCCCGAGA------CCGACGCCGACGCCGCCTCCTCCTTCCAGGAGCGCGC
CAAGGACATCCTCGTCGTCGTCTCGGGCCTGCTCTTCGGCTTCGGCTGCGGCGCCCTCACCGCCGCCTCCATGTACCTCG
TCTGGTCCCTCGTCGCCTCCACCGGCGCCGCCAGCCCCTACGAGGAGCTCTACAGCGACGACGAGGA-------------
--------CGACGACGGCGCCGAGAGCCCCAAGAAGGCCGGCTACGTCATCATCCACGGCGCCGAGGACGTCGTCGCCG-
-----GTAAGAACTAACTAGGATCGGGCTTTGCAATCGTCGTCGGCAGGCAGAGGATTCGGGTTGCATAATTATATGGAA
TTGTGGAGTACTCTTATAC---TATATTCGCACCTATGATA-CGTGTTGCGCCTGTTTACCGTTCTCTATGTGTGTGTGT
GTGTGGTTGGGGAGGACAAATTGTGAAGAATGTGATTCCTATCTGTTCTTACATATATATGGTCAATTTCATGCCCAAAC
ATGATTATGTATCCATCCTTAAGCATGAAACTTGATGGTTTCTGCTGCCTAGTAAAA-TTGCAACATGTAAACAACCTGT
GGTGAATTGTAGCAAGTTGTTT----GTGCAGTTATCGTCACCGAATGTGCAGAATTTTCACCCCTGACAGGGGTA----
-TCAGTCGAGTGATGTGTCTATTTCGATGGGATCGGGGCCTGGTGTAGATAATCCTGGAGTGATCAGTCATTTGTCTGCA
TAGGGACACCTCATATAGTCATGTTTGCATCATTTCCCACTAAAACCCGACCCCTGAGTGTGACTCTGGAACCTCCTTGG
ATGTATGCATGGCTTCCAATTAGGCAAAGTTAGGTGCAGTGCACCGACTGTCTAATGCTATGGTTTCTAGTAATAAACTG
ATTTCTGATCCCCTTGAATTTCTCCACTCCACTACTTAATCGCGGAACCTACTCCTGAAATGAAATTTTATGAAATGTGA
GCTCTTGGATGGCTCCATTTCTTCTCTTTACCCCTGACCCA--------TATTAATAACGGTATGGCACCGACAATATAA
CACATTGGTTCCC-AGTAATAGACTGATTTCTGATCCCCTTGAATTTACTCCTGACCCATAGTAATATACTGTCCACACT
GTTGCACCTGTCTAATGTTCTCTATGTGTATGGTTGGGGGCAAGAAATTGTATATGTGCTTTATATCTGTTCTTGCATAT
GGTCATTTTCAAACTGAAACATGCTTAGTATCCATCCTGAAGCATGGAACCTGCTGGATTCTGTCTTCTGGTTCTTACT
>chrUn_751
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------------------------------GGCTGCCCATGCCCAGATTTAGGACCCGGACACAATACTGAAACT--ATC
CGAGGACCAAACCGCAAAAC----CTCCCCCTCCCGTCGGCC----AAGGAAGACTCTTCCGCCCGATAAAGCATCGGAA
GTCTCCTCCCCACCGCGCCGAGTCAAACAAACAAACCTCCCCAATTCCATCCCCATTCCCTTCCCCAAAAATTTCCCCAC
CGGCGACGACGCCCTCCCCAAATCCGATCCGCCGCCGCCCGCCGTTGACGCCAGCCATGGCCGCCGCCGCCCGCCGCGCC
CTGCTCCTCCTCCTCGCCGCCGCCGCCGTGGCCCTCCTCGCGGCGCCCCCGGCGGCCGCCGCCCGCCCCTGCGGCCGCGC
GCAGACGCTGCTCATCTCCTTCTCCTCCTTCTCCCGCCCCAACCCGGACCCCGCCGACCCGTCGCCGCTCACCACCACCG
TCGTCACCGTCCTCCGCGTCCGCCGCCTCGGCCCGCACCGCTTCCACGCCCACGACCAGAACCGCCTCCAGATCCGCCGC
CCCGCCGAGCCCCTCCCCGCCGTTGGCACCCCCGAGCGCGACGCCGACGCCGACGCCGCCTCCTCCTTCCAGGAGCGCGC
CAAGGACATCCTCGTCGTCGTCTCGGGCCTGCTCTTCGGCTTCGGCTGCGGCGCCCTCACCGCCGCCTCCATGTACCTCG
TCTGGTCCCTCGTCGCCTCCACCGGCGCCGCCGGCCCCTACGAGGAGCTCTACAGCGACGACGACG------ACGAGGAC
AACGTCTCCGACGACGGCGCCGAGAGCCCCAAGAAGGCCGGCTACGTCATCATCCACGGCGCCGAGGACGTCGCCGCCGC
CGCCGGTAAGAACTAACTAGGATCGGGCCTTGC---CGTCGTCGGCAGGCAGAGGATTCGGGTTGCATAACTACATGGAA
TTGTGGAGTACTGTTATTACTATATATTCGCACCTATGATA-CATGTTGCGCCTGTCTACCGTTCTCTA------TGTGT
GTGTGGTTGGGGAGGACAAATTGTGAAGAATGTGATTCCTATCTGTTCTTACATATATATGGTCAATCTCATGCCCAAAC
ATGATTATGTATCCGTCCTTGAGCATGGAACTTGTTGGTTTCTGCTGCCTAGTAAAA-TTGCAACATGTAAACAACCTGT
GGTGAATTGTGGCAAGCTGTTTGTTTGTGCAGTTATCGTCGCAGAATGTGCAGAATTTTCACCCCTCACAGGGGTA----
-TCAGTCGAGTGATGTGTCTATTTCGATGGGATCGGG-CCCGGTGTAGATAATCCTGGAGTGATCAGTCATTTGTCTGCA
TAGCGACACCTCATATAGTCATGTTTGTATCATTTCCCACTAAAACCTGACCTCTGAGTGTGACTCCAGAACTTCCTTGG
CTGTATGCATGGCTTCCAATTAGGCAAAGTTAGGTGCAGCCCACCGACTATCTAATGCTATGGTTTCTAGTAATTAACTG
ATTTCTGAAACCCTTGAATTTCTCCACCCCACTACTTAATCACGGAACCTACTCTTGAAATGAAATTTTATGA-------
-CTCTTGGATGGCTCCATTTCTTCTCTGTACCCCTGACCCATACAGCCATATTAATAACGGTATGGCACCGACAATCTAA
CACATTGGTTCCT-AGTAATAGACTGATTTCTGATCCCCTTGAATTTACCCCTGACCCATAGTAATATACTGTCCACACT
GTTGCACCTGTCTAATGTTCTCTATGTGTATGGTTGGGGCCAAGAAATTGTATATGTGCTTTCTATCTGTTCTTGCATAT
GGTCATTTTCAAACTGAAACATGCTTAGTATCCATCCTGAAGCATGGAACCTGCTGGATTCTGTCTTCTGGTTCCTAC-
>chr4B_751
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------------------------------GGCTGCCCATGCCCAGATTTAGGACCCGGACGCAATACGGAAACATC-TC
CGAGGACCAAACCGCAAAACTCCCCTCCCCTCCCCGTCGGCC----AAGGAAAA----------CGATAAAGCATCGGAA
GTCTACTCCC-ACGGCGCCGAGT----CAAACAAACCTCCCCAATTCCATCCCCATTCCC-----CAAAATTTTCCCCAC
CGGCGACGCCGCCCTCCCCAAATCCGAT----------CCGCCGTTGACGCCAGCCATGGCCGCCGCC---CGCCGCGTC
CTGCTGCTCCTCCTTGCCGCCGCCGCCGCGGCCCTCCTCGCGGCGCCCCCTGCGGCCGCCGCGCGCCCCTGCGGCCGCGC
GCAGACGCTGCTCATCTCCTTCTCCTCCTTCTCCCGCCCCAACCCGGACCGGGCCGACCCCTCGCCGCTCACCACCACCG
TCGTCACCGTCCTCCGCGTCCGCCGCCTCGGCCCGCACCGCTTCCACGCCCACGACCAGAACCACCTCCAGATCCGCCGC
CCCGCCGAGCCCCTCCCCGCCGCCGTCGCCACCC---------------CCGACGCCGCCTCCTCCTTCCAGGAGCGCGC
CAAGGACATCCTCGTCGTCGTCTCGGGCCTGCTCTTCGGCTTCGGCTGCGGCGCCCTCACCGCCGCCTCCATGTACCTCC
TCTGGTCCCTCGTCGCCTCCGCCGGCGCCGCCAGCCCCTACGAGGAGCTCTACAGCGAGGACGACGTGTCGGACGACGAC
GACGCCTCCGAC------------AGCCCCAAGAAGGCCGGCTACGTCATCATCCACGGCGCCGAGGACGTCGTCGCCGC
CGCCGGTAAGAACTAACTAGGGCTGGGCCTTGC---CGTCGCCGGCAGGCAGATGATTCGGGCTGCATAACTACATGGAA
TTGTGGAGTACTCTTATTACTAC--ATTCGCACCTATGATATCGTGTTGCGCCTGTCTACCGTTCTATA------TGTGT
GTGA--TTGGGGAGGAGAAATTGTGAAGAATGTGATTCCTATCTGTTCTTACATATATATGGTCAATCTCATGCCCAAAC
ATGATTATGTATCCATCCGTAAGCATGAAACTTGTTGGTTTCTGCTGCCTAGTAAAAATTGCAACATGTAAACAACCTGT
GGTGAATTGTGGTAAGCTGTTT----GTGCAGTTGCCGTCGCCGAATATGCAGAATTTTCACCCCTCACAGGGGTATCGT
ATCAGTCGAGTGATGTGTCGATGTCGACGGGATCGGGGCCCGGCGTAGATAATCCTGGAGTGATCGGTCATTTGTCTGCA
TAGCGACACCTCATATAGTCATGTTTGTATCATTTCCCACTAAAACCTGATCCCTGAGGGCGACTCCGGAACCTCCTTGG
CTGTATGCATGGCTTCCAATTAGGCAAAGTTAGGTGCAGTGCACCGACTATCTAACGCTATGGTTTCTAGTAATAAACTG
ATTTCTGATCCCCTTGAATTCCTCCACTCCACTACTTAATCACGGAACCTACTCCTGAAATGAAAATTTATGAAATGTGA
GCTCTTGGATGGCTCCATTTCTTCTCTGTACCCCTGACCCA--------TATTAATAACGTTATGGCACCGACATTCTAA
CACATTGGTTCCTAAGTAATAGACTGATTTCTGATCCCCTTGAATTTACCCCTGACCCATAGTAATATACTGTCCACACT
GTTGCACCTGTCTAATGTTCTCTATGTGTATGGTCTGGGACAAGAAATTGTATATGTGCTTTCTATCTGTTCTTGCATAT
GGTCATTTTCAAACTGAAGCATGCTTAGTATCCATCCTGAAGCATGGGACCTGTTGGATTCTGTCTGCTGGTTCTTAC-
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S-S--------S------------------SS-SSSSS-S-S----
------------------------------------------SSSS----------------------------------
--------------------------------SSS---------------------------------------------
-----------------------------------------------------------------------S--------
--------------------------S-----------------------------------------------------
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---------S--------------------------S-------------------------------------------
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----------------------------------------------------------------S-S-------------
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----------------------------S----SSS----------------------------------S--S------
-----------------SS-------------------------------------S------------SSSSSS-----
-------------------------------------------------------------------S------------
----------------------------------S---------------------------------------------
----------S-----S-----------------------S-------------------------S-------------
----------------------------------------S---------------------------------------
---S-----------------------S-------------------S------------------S-------------
S------------------------------------------------S------------------------------
-----------------------------------------S--------------------------------------
---------------------------S------------------------------------------------S---
------------S------------------------------------S------------------------------
---------------------------------------S----------------------S-----------------
------------------------------------------------------------------------------S
>forward_569
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---------------------------------------------------------------------GGCTCCCGGGA
ATTCTGAAA-----------------------------------------------------------------------
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>reverse_1751
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----------------------------------------------------------------------GTGTGTGTGT
GTGTGGTTGG----------------------------------------------------------------------
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