Multiple sequence alignment - TraesCS5A01G536800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G536800 chr5A 100.000 2579 0 0 1 2579 693309372 693306794 0.000000e+00 4763.0
1 TraesCS5A01G536800 chr5A 85.075 67 6 2 55 119 445211454 445211390 5.960000e-07 65.8
2 TraesCS5A01G536800 chr5A 85.075 67 6 2 55 119 445215762 445215698 5.960000e-07 65.8
3 TraesCS5A01G536800 chr5A 85.075 67 6 2 55 119 445222682 445222618 5.960000e-07 65.8
4 TraesCS5A01G536800 chr5A 85.075 67 6 2 55 119 445228151 445228087 5.960000e-07 65.8
5 TraesCS5A01G536800 chr5A 85.075 67 6 2 55 119 445233620 445233556 5.960000e-07 65.8
6 TraesCS5A01G536800 chr4D 83.655 2484 204 90 141 2560 507903231 507900886 0.000000e+00 2152.0
7 TraesCS5A01G536800 chr4B 83.486 2180 179 86 184 2276 655753327 655755412 0.000000e+00 1864.0
8 TraesCS5A01G536800 chr1B 84.396 455 44 10 730 1178 395974699 395974266 3.070000e-114 422.0
9 TraesCS5A01G536800 chr1B 85.034 147 16 6 1165 1311 395974312 395974172 7.440000e-31 145.0
10 TraesCS5A01G536800 chr1B 100.000 32 0 0 741 772 45456732 45456763 2.770000e-05 60.2
11 TraesCS5A01G536800 chr1B 100.000 32 0 0 741 772 45488495 45488526 2.770000e-05 60.2
12 TraesCS5A01G536800 chr1B 100.000 32 0 0 741 772 45514697 45514728 2.770000e-05 60.2
13 TraesCS5A01G536800 chr1B 100.000 32 0 0 741 772 45548495 45548526 2.770000e-05 60.2
14 TraesCS5A01G536800 chrUn 85.075 67 6 2 55 119 328526846 328526782 5.960000e-07 65.8
15 TraesCS5A01G536800 chr4A 97.222 36 1 0 741 776 624930667 624930632 7.710000e-06 62.1
16 TraesCS5A01G536800 chr1A 100.000 32 0 0 741 772 570149368 570149399 2.770000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G536800 chr5A 693306794 693309372 2578 True 4763.0 4763 100.000 1 2579 1 chr5A.!!$R6 2578
1 TraesCS5A01G536800 chr4D 507900886 507903231 2345 True 2152.0 2152 83.655 141 2560 1 chr4D.!!$R1 2419
2 TraesCS5A01G536800 chr4B 655753327 655755412 2085 False 1864.0 1864 83.486 184 2276 1 chr4B.!!$F1 2092
3 TraesCS5A01G536800 chr1B 395974172 395974699 527 True 283.5 422 84.715 730 1311 2 chr1B.!!$R1 581

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
131 132 0.036022 TGACGGCAACATGATCCACA 59.964 50.0 0.0 0.0 0.0 4.17 F
257 264 0.179166 TTTGCGGATCATGAAAGCGC 60.179 50.0 0.0 0.0 0.0 5.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1518 1547 0.032952 TGTACACCACGAGGAAGCAC 59.967 55.0 5.68 0.0 38.69 4.40 R
1916 2008 0.036483 AAAACAATGGCGGATTGGGC 60.036 50.0 10.79 0.0 45.20 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.105323 GGTGCTTTGTTGTTCTCGTG 57.895 50.000 0.00 0.00 0.00 4.35
20 21 1.400494 GGTGCTTTGTTGTTCTCGTGT 59.600 47.619 0.00 0.00 0.00 4.49
21 22 2.440501 GTGCTTTGTTGTTCTCGTGTG 58.559 47.619 0.00 0.00 0.00 3.82
22 23 2.080693 TGCTTTGTTGTTCTCGTGTGT 58.919 42.857 0.00 0.00 0.00 3.72
23 24 2.486203 TGCTTTGTTGTTCTCGTGTGTT 59.514 40.909 0.00 0.00 0.00 3.32
24 25 3.098636 GCTTTGTTGTTCTCGTGTGTTC 58.901 45.455 0.00 0.00 0.00 3.18
25 26 3.342269 CTTTGTTGTTCTCGTGTGTTCG 58.658 45.455 0.00 0.00 0.00 3.95
26 27 1.999048 TGTTGTTCTCGTGTGTTCGT 58.001 45.000 0.00 0.00 0.00 3.85
27 28 1.656594 TGTTGTTCTCGTGTGTTCGTG 59.343 47.619 0.00 0.00 0.00 4.35
28 29 1.657094 GTTGTTCTCGTGTGTTCGTGT 59.343 47.619 0.00 0.00 0.00 4.49
29 30 1.999048 TGTTCTCGTGTGTTCGTGTT 58.001 45.000 0.00 0.00 0.00 3.32
30 31 1.656594 TGTTCTCGTGTGTTCGTGTTG 59.343 47.619 0.00 0.00 0.00 3.33
31 32 1.005347 GTTCTCGTGTGTTCGTGTTGG 60.005 52.381 0.00 0.00 0.00 3.77
32 33 0.528901 TCTCGTGTGTTCGTGTTGGG 60.529 55.000 0.00 0.00 0.00 4.12
33 34 1.495584 CTCGTGTGTTCGTGTTGGGG 61.496 60.000 0.00 0.00 0.00 4.96
34 35 2.539338 CGTGTGTTCGTGTTGGGGG 61.539 63.158 0.00 0.00 0.00 5.40
58 59 4.875713 GGGGGCGACATGGCGATT 62.876 66.667 28.68 0.00 46.04 3.34
59 60 2.828549 GGGGCGACATGGCGATTT 60.829 61.111 28.68 0.00 46.04 2.17
60 61 2.414785 GGGGCGACATGGCGATTTT 61.415 57.895 28.68 0.00 46.04 1.82
61 62 1.510844 GGGCGACATGGCGATTTTT 59.489 52.632 28.68 0.00 46.04 1.94
62 63 0.525455 GGGCGACATGGCGATTTTTC 60.525 55.000 28.68 5.08 46.04 2.29
63 64 0.861450 GGCGACATGGCGATTTTTCG 60.861 55.000 28.68 9.57 0.00 3.46
64 65 0.096281 GCGACATGGCGATTTTTCGA 59.904 50.000 28.68 0.00 34.64 3.71
65 66 1.797964 CGACATGGCGATTTTTCGAC 58.202 50.000 18.41 0.00 42.38 4.20
66 67 1.393539 CGACATGGCGATTTTTCGACT 59.606 47.619 18.41 0.00 42.55 4.18
67 68 2.774007 GACATGGCGATTTTTCGACTG 58.226 47.619 2.63 1.73 42.55 3.51
68 69 2.151202 ACATGGCGATTTTTCGACTGT 58.849 42.857 2.63 2.30 42.55 3.55
69 70 2.159627 ACATGGCGATTTTTCGACTGTC 59.840 45.455 2.63 0.00 42.55 3.51
70 71 2.163818 TGGCGATTTTTCGACTGTCT 57.836 45.000 6.21 0.00 42.55 3.41
71 72 3.306917 TGGCGATTTTTCGACTGTCTA 57.693 42.857 6.21 0.00 42.55 2.59
72 73 2.991190 TGGCGATTTTTCGACTGTCTAC 59.009 45.455 6.21 0.00 42.55 2.59
73 74 3.251571 GGCGATTTTTCGACTGTCTACT 58.748 45.455 6.21 0.00 38.28 2.57
74 75 4.082625 TGGCGATTTTTCGACTGTCTACTA 60.083 41.667 6.21 0.00 42.55 1.82
75 76 4.499758 GGCGATTTTTCGACTGTCTACTAG 59.500 45.833 6.21 0.00 38.28 2.57
76 77 5.330295 GCGATTTTTCGACTGTCTACTAGA 58.670 41.667 6.21 0.00 34.64 2.43
77 78 5.798934 GCGATTTTTCGACTGTCTACTAGAA 59.201 40.000 6.21 0.00 34.64 2.10
78 79 6.237253 GCGATTTTTCGACTGTCTACTAGAAC 60.237 42.308 6.21 0.00 34.64 3.01
79 80 6.800408 CGATTTTTCGACTGTCTACTAGAACA 59.200 38.462 6.21 0.00 34.64 3.18
80 81 7.325338 CGATTTTTCGACTGTCTACTAGAACAA 59.675 37.037 6.21 2.05 34.64 2.83
81 82 7.925703 TTTTTCGACTGTCTACTAGAACAAG 57.074 36.000 6.21 0.00 0.00 3.16
82 83 6.630444 TTTCGACTGTCTACTAGAACAAGT 57.370 37.500 6.21 0.00 0.00 3.16
83 84 7.734924 TTTCGACTGTCTACTAGAACAAGTA 57.265 36.000 6.21 0.00 0.00 2.24
84 85 7.918536 TTCGACTGTCTACTAGAACAAGTAT 57.081 36.000 6.21 0.00 31.70 2.12
85 86 7.918536 TCGACTGTCTACTAGAACAAGTATT 57.081 36.000 6.21 0.00 31.70 1.89
96 97 2.749541 CAAGTATTGCGCGACTCCA 58.250 52.632 12.10 0.00 40.39 3.86
97 98 1.075542 CAAGTATTGCGCGACTCCAA 58.924 50.000 12.10 4.48 40.39 3.53
98 99 1.665679 CAAGTATTGCGCGACTCCAAT 59.334 47.619 12.10 12.71 40.39 3.16
99 100 1.290203 AGTATTGCGCGACTCCAATG 58.710 50.000 12.10 0.00 33.93 2.82
100 101 0.316196 GTATTGCGCGACTCCAATGC 60.316 55.000 12.10 9.94 33.93 3.56
101 102 0.742635 TATTGCGCGACTCCAATGCA 60.743 50.000 12.10 0.00 33.93 3.96
102 103 2.257302 TTGCGCGACTCCAATGCAA 61.257 52.632 12.10 0.00 42.68 4.08
103 104 2.099062 GCGCGACTCCAATGCAAG 59.901 61.111 12.10 0.00 0.00 4.01
104 105 2.390599 GCGCGACTCCAATGCAAGA 61.391 57.895 12.10 0.00 0.00 3.02
105 106 1.712081 CGCGACTCCAATGCAAGAG 59.288 57.895 0.00 9.52 36.16 2.85
106 107 1.699656 CGCGACTCCAATGCAAGAGG 61.700 60.000 0.00 6.44 34.27 3.69
107 108 1.372087 GCGACTCCAATGCAAGAGGG 61.372 60.000 14.18 8.10 34.27 4.30
108 109 0.745845 CGACTCCAATGCAAGAGGGG 60.746 60.000 14.18 8.39 34.27 4.79
109 110 1.000396 ACTCCAATGCAAGAGGGGC 60.000 57.895 14.18 0.00 34.27 5.80
110 111 2.045045 TCCAATGCAAGAGGGGCG 60.045 61.111 0.00 0.00 0.00 6.13
111 112 2.045045 CCAATGCAAGAGGGGCGA 60.045 61.111 0.00 0.00 0.00 5.54
112 113 1.454479 CCAATGCAAGAGGGGCGAT 60.454 57.895 0.00 0.00 0.00 4.58
113 114 1.731433 CCAATGCAAGAGGGGCGATG 61.731 60.000 0.00 0.00 0.00 3.84
114 115 0.749091 CAATGCAAGAGGGGCGATGA 60.749 55.000 0.00 0.00 0.00 2.92
115 116 0.749454 AATGCAAGAGGGGCGATGAC 60.749 55.000 0.00 0.00 0.00 3.06
116 117 2.892425 GCAAGAGGGGCGATGACG 60.892 66.667 0.00 0.00 42.93 4.35
117 118 2.202932 CAAGAGGGGCGATGACGG 60.203 66.667 0.00 0.00 40.15 4.79
125 126 3.485110 GCGATGACGGCAACATGA 58.515 55.556 0.00 0.00 40.15 3.07
126 127 2.016961 GCGATGACGGCAACATGAT 58.983 52.632 0.00 0.00 40.15 2.45
127 128 0.041839 GCGATGACGGCAACATGATC 60.042 55.000 0.00 0.00 40.15 2.92
128 129 0.583438 CGATGACGGCAACATGATCC 59.417 55.000 0.00 0.00 35.72 3.36
129 130 1.667236 GATGACGGCAACATGATCCA 58.333 50.000 0.00 0.00 0.00 3.41
130 131 1.331756 GATGACGGCAACATGATCCAC 59.668 52.381 0.00 0.00 0.00 4.02
131 132 0.036022 TGACGGCAACATGATCCACA 59.964 50.000 0.00 0.00 0.00 4.17
132 133 1.339920 TGACGGCAACATGATCCACAT 60.340 47.619 0.00 0.00 40.17 3.21
166 167 8.871686 AGTTGATCCAAGACAACAAATAAAAC 57.128 30.769 0.00 0.00 45.70 2.43
175 176 6.981722 AGACAACAAATAAAACTGATCCACC 58.018 36.000 0.00 0.00 0.00 4.61
182 183 8.043710 ACAAATAAAACTGATCCACCACAAAAA 58.956 29.630 0.00 0.00 0.00 1.94
212 215 7.125204 AGGGTCTATTTAACCAAAAATTAGGCC 59.875 37.037 0.00 0.00 38.62 5.19
256 263 2.480224 ATTTGCGGATCATGAAAGCG 57.520 45.000 0.00 0.00 0.00 4.68
257 264 0.179166 TTTGCGGATCATGAAAGCGC 60.179 50.000 0.00 0.00 0.00 5.92
261 268 1.136141 GCGGATCATGAAAGCGCATAG 60.136 52.381 11.47 0.00 0.00 2.23
262 269 2.138320 CGGATCATGAAAGCGCATAGT 58.862 47.619 11.47 0.00 0.00 2.12
264 271 3.121944 CGGATCATGAAAGCGCATAGTAC 59.878 47.826 11.47 0.00 0.00 2.73
265 272 4.058124 GGATCATGAAAGCGCATAGTACA 58.942 43.478 11.47 0.86 0.00 2.90
266 273 4.084328 GGATCATGAAAGCGCATAGTACAC 60.084 45.833 11.47 0.00 0.00 2.90
320 327 2.202395 GCTGGCAAAAGGCTCCACA 61.202 57.895 0.00 0.00 44.01 4.17
321 328 1.538687 GCTGGCAAAAGGCTCCACAT 61.539 55.000 0.00 0.00 44.01 3.21
324 331 1.344114 TGGCAAAAGGCTCCACATTTC 59.656 47.619 0.00 0.00 44.01 2.17
360 367 0.394565 AGAACTGAGAAAGGCTGCGT 59.605 50.000 0.00 0.00 0.00 5.24
364 371 1.070134 ACTGAGAAAGGCTGCGTTACA 59.930 47.619 8.11 8.28 0.00 2.41
365 372 1.461127 CTGAGAAAGGCTGCGTTACAC 59.539 52.381 8.11 3.81 0.00 2.90
380 387 3.057104 CGTTACACTCCACACCATCTACA 60.057 47.826 0.00 0.00 0.00 2.74
439 446 3.986006 GCGTCGGTGTGGTGGAGA 61.986 66.667 0.00 0.00 0.00 3.71
440 447 2.258591 CGTCGGTGTGGTGGAGAG 59.741 66.667 0.00 0.00 0.00 3.20
442 449 1.587054 GTCGGTGTGGTGGAGAGAG 59.413 63.158 0.00 0.00 0.00 3.20
444 451 2.279069 CGGTGTGGTGGAGAGAGCT 61.279 63.158 0.00 0.00 0.00 4.09
445 452 0.965866 CGGTGTGGTGGAGAGAGCTA 60.966 60.000 0.00 0.00 0.00 3.32
446 453 0.533032 GGTGTGGTGGAGAGAGCTAC 59.467 60.000 0.00 0.00 0.00 3.58
449 456 2.300437 GTGTGGTGGAGAGAGCTACTTT 59.700 50.000 0.00 0.00 0.00 2.66
451 458 4.021368 GTGTGGTGGAGAGAGCTACTTTTA 60.021 45.833 0.00 0.00 0.00 1.52
459 466 5.068067 GGAGAGAGCTACTTTTAGGTGTAGG 59.932 48.000 0.00 0.00 36.13 3.18
460 467 5.581975 AGAGAGCTACTTTTAGGTGTAGGT 58.418 41.667 4.81 4.81 46.12 3.08
463 470 3.055312 AGCTACTTTTAGGTGTAGGTGGC 60.055 47.826 0.00 0.00 43.19 5.01
497 504 2.158957 GGTGGCGACTAAATCTGATGGA 60.159 50.000 0.00 0.00 0.00 3.41
637 648 4.329545 GTGCTGGGCTTCCGTCCA 62.330 66.667 0.00 0.00 44.23 4.02
831 842 2.366570 GAGAGGGGCAGGGAGAGT 59.633 66.667 0.00 0.00 0.00 3.24
840 851 4.049817 AGGGAGAGTCGGCGGTCT 62.050 66.667 7.21 9.94 0.00 3.85
899 910 3.572255 GCTACTGCTACTGCTAGGAAGAT 59.428 47.826 0.00 0.00 40.48 2.40
948 965 2.202810 GCGAGGAAGGAGAAGCCG 60.203 66.667 0.00 0.00 43.43 5.52
1279 1308 4.854784 GCGAGGTGATCTGCGCGA 62.855 66.667 12.10 3.27 40.06 5.87
1299 1328 2.809601 GTCGCTACGTGCCACCAG 60.810 66.667 0.00 0.00 38.78 4.00
1471 1500 3.105852 GAGTACGACTCGGCGGACC 62.106 68.421 7.21 0.00 46.08 4.46
1551 1580 0.178903 TGTACAGGGTCAAGCCTCCT 60.179 55.000 0.00 0.00 37.43 3.69
1565 1594 3.368190 CTCCTCCGGAGCTGCACAG 62.368 68.421 26.87 10.62 43.29 3.66
1582 1611 2.420890 GCTCCTCCAGCTGATCCG 59.579 66.667 17.39 0.00 45.83 4.18
1583 1612 2.130426 GCTCCTCCAGCTGATCCGA 61.130 63.158 17.39 2.35 45.83 4.55
1585 1614 2.069465 CTCCTCCAGCTGATCCGACG 62.069 65.000 17.39 0.00 0.00 5.12
1586 1615 2.279120 CTCCAGCTGATCCGACGC 60.279 66.667 17.39 0.00 0.00 5.19
1588 1617 4.899239 CCAGCTGATCCGACGCCC 62.899 72.222 17.39 0.00 0.00 6.13
1589 1618 3.842923 CAGCTGATCCGACGCCCT 61.843 66.667 8.42 0.00 0.00 5.19
1590 1619 3.077556 AGCTGATCCGACGCCCTT 61.078 61.111 0.00 0.00 0.00 3.95
1591 1620 2.892425 GCTGATCCGACGCCCTTG 60.892 66.667 0.00 0.00 0.00 3.61
1594 1623 4.467084 GATCCGACGCCCTTGCCA 62.467 66.667 0.00 0.00 0.00 4.92
1595 1624 3.757248 GATCCGACGCCCTTGCCAT 62.757 63.158 0.00 0.00 0.00 4.40
1596 1625 4.776322 TCCGACGCCCTTGCCATG 62.776 66.667 0.00 0.00 0.00 3.66
1598 1627 4.776322 CGACGCCCTTGCCATGGA 62.776 66.667 18.40 0.00 0.00 3.41
1599 1628 2.124151 GACGCCCTTGCCATGGAT 60.124 61.111 18.40 0.00 0.00 3.41
1600 1629 1.754234 GACGCCCTTGCCATGGATT 60.754 57.895 18.40 0.00 0.00 3.01
1601 1630 1.728490 GACGCCCTTGCCATGGATTC 61.728 60.000 18.40 0.00 0.00 2.52
1602 1631 1.753848 CGCCCTTGCCATGGATTCA 60.754 57.895 18.40 0.07 0.00 2.57
1604 1633 0.685458 GCCCTTGCCATGGATTCACT 60.685 55.000 18.40 0.00 0.00 3.41
1606 1635 1.617804 CCCTTGCCATGGATTCACTGT 60.618 52.381 18.40 0.00 0.00 3.55
1608 1637 1.399440 CTTGCCATGGATTCACTGTCG 59.601 52.381 18.40 0.00 0.00 4.35
1611 1640 1.945819 GCCATGGATTCACTGTCGTGT 60.946 52.381 18.40 0.00 41.89 4.49
1612 1641 2.426522 CCATGGATTCACTGTCGTGTT 58.573 47.619 5.56 0.00 41.89 3.32
1613 1642 3.595173 CCATGGATTCACTGTCGTGTTA 58.405 45.455 5.56 0.00 41.89 2.41
1614 1643 4.000325 CCATGGATTCACTGTCGTGTTAA 59.000 43.478 5.56 0.00 41.89 2.01
1615 1644 4.635765 CCATGGATTCACTGTCGTGTTAAT 59.364 41.667 5.56 0.00 41.89 1.40
1616 1645 5.220662 CCATGGATTCACTGTCGTGTTAATC 60.221 44.000 5.56 0.00 41.89 1.75
1617 1646 4.888917 TGGATTCACTGTCGTGTTAATCA 58.111 39.130 11.59 0.00 41.89 2.57
1620 1649 3.737032 TCACTGTCGTGTTAATCACCA 57.263 42.857 0.00 0.00 43.51 4.17
1622 1651 4.242475 TCACTGTCGTGTTAATCACCATC 58.758 43.478 0.00 0.00 43.51 3.51
1623 1652 3.993736 CACTGTCGTGTTAATCACCATCA 59.006 43.478 3.59 1.36 43.51 3.07
1624 1653 3.994392 ACTGTCGTGTTAATCACCATCAC 59.006 43.478 3.59 0.00 43.51 3.06
1626 1655 2.347452 GTCGTGTTAATCACCATCACCG 59.653 50.000 3.59 0.00 43.51 4.94
1633 1675 1.552799 ATCACCATCACCGCCACTCA 61.553 55.000 0.00 0.00 0.00 3.41
1667 1709 0.956410 GCTAGCTAGGCTCGGATCGA 60.956 60.000 22.10 0.00 40.44 3.59
1668 1710 1.745232 CTAGCTAGGCTCGGATCGAT 58.255 55.000 13.32 0.00 40.44 3.59
1688 1730 1.428869 ATCGATCTTCCTTCCCCCAG 58.571 55.000 0.00 0.00 0.00 4.45
1701 1743 2.735772 CCCCAGTCCTCCATGACCG 61.736 68.421 0.00 0.00 35.83 4.79
1702 1744 1.685765 CCCAGTCCTCCATGACCGA 60.686 63.158 0.00 0.00 35.83 4.69
1703 1745 1.050988 CCCAGTCCTCCATGACCGAT 61.051 60.000 0.00 0.00 35.83 4.18
1704 1746 1.704641 CCAGTCCTCCATGACCGATA 58.295 55.000 0.00 0.00 35.83 2.92
1795 1839 6.655425 TGACCGAAATTGTACCATACATCAAA 59.345 34.615 0.00 0.00 38.68 2.69
1796 1840 7.083875 ACCGAAATTGTACCATACATCAAAG 57.916 36.000 0.00 0.00 38.68 2.77
1806 1861 4.142093 ACCATACATCAAAGAAATGCAGCC 60.142 41.667 0.00 0.00 0.00 4.85
1822 1877 2.289072 GCAGCCACTACTTGAGTTCAGA 60.289 50.000 0.00 0.00 35.64 3.27
1823 1878 3.618507 GCAGCCACTACTTGAGTTCAGAT 60.619 47.826 0.00 0.00 35.64 2.90
1825 1880 3.119316 AGCCACTACTTGAGTTCAGATCG 60.119 47.826 0.00 0.00 35.64 3.69
1826 1881 3.367498 GCCACTACTTGAGTTCAGATCGT 60.367 47.826 0.00 0.00 35.64 3.73
1830 1885 5.004448 ACTACTTGAGTTCAGATCGTCTCA 58.996 41.667 7.64 7.64 33.13 3.27
1833 1888 4.460731 ACTTGAGTTCAGATCGTCTCATCA 59.539 41.667 10.92 0.97 36.91 3.07
1834 1889 5.126869 ACTTGAGTTCAGATCGTCTCATCAT 59.873 40.000 10.92 1.69 36.91 2.45
1835 1890 6.319911 ACTTGAGTTCAGATCGTCTCATCATA 59.680 38.462 10.92 0.36 36.91 2.15
1836 1891 6.066054 TGAGTTCAGATCGTCTCATCATAC 57.934 41.667 7.64 0.00 32.95 2.39
1837 1892 5.825151 TGAGTTCAGATCGTCTCATCATACT 59.175 40.000 7.64 0.00 32.95 2.12
1838 1893 6.319911 TGAGTTCAGATCGTCTCATCATACTT 59.680 38.462 7.64 0.00 32.95 2.24
1841 1896 5.752712 TCAGATCGTCTCATCATACTTTCG 58.247 41.667 0.00 0.00 0.00 3.46
1907 1999 7.275888 ACAAACAAATGCAGTTCATCTCTTA 57.724 32.000 0.00 0.00 33.40 2.10
1914 2006 6.981762 ATGCAGTTCATCTCTTACTTTCAG 57.018 37.500 0.00 0.00 0.00 3.02
1915 2007 6.101650 TGCAGTTCATCTCTTACTTTCAGA 57.898 37.500 0.00 0.00 0.00 3.27
1916 2008 6.162079 TGCAGTTCATCTCTTACTTTCAGAG 58.838 40.000 0.00 0.00 39.45 3.35
1965 2070 2.931386 GACACAGCACAGCACGAC 59.069 61.111 0.00 0.00 0.00 4.34
1991 2096 1.884004 ACACCGTTCCGTTCCGTTG 60.884 57.895 0.00 0.00 0.00 4.10
1992 2097 2.968697 ACCGTTCCGTTCCGTTGC 60.969 61.111 0.00 0.00 0.00 4.17
1994 2099 4.712873 CGTTCCGTTCCGTTGCGC 62.713 66.667 0.00 0.00 0.00 6.09
2024 2131 3.700970 TCCGTCAATCAGCGCCCA 61.701 61.111 2.29 0.00 0.00 5.36
2025 2132 2.514592 CCGTCAATCAGCGCCCAT 60.515 61.111 2.29 0.00 0.00 4.00
2026 2133 2.114670 CCGTCAATCAGCGCCCATT 61.115 57.895 2.29 0.00 0.00 3.16
2027 2134 1.353103 CGTCAATCAGCGCCCATTC 59.647 57.895 2.29 0.00 0.00 2.67
2028 2135 1.368345 CGTCAATCAGCGCCCATTCA 61.368 55.000 2.29 0.00 0.00 2.57
2029 2136 0.379669 GTCAATCAGCGCCCATTCAG 59.620 55.000 2.29 0.00 0.00 3.02
2030 2137 1.065273 CAATCAGCGCCCATTCAGC 59.935 57.895 2.29 0.00 0.00 4.26
2031 2138 1.378911 AATCAGCGCCCATTCAGCA 60.379 52.632 2.29 0.00 0.00 4.41
2032 2139 1.660560 AATCAGCGCCCATTCAGCAC 61.661 55.000 2.29 0.00 0.00 4.40
2033 2140 2.547640 ATCAGCGCCCATTCAGCACT 62.548 55.000 2.29 0.00 0.00 4.40
2034 2141 2.749044 AGCGCCCATTCAGCACTG 60.749 61.111 2.29 0.00 0.00 3.66
2035 2142 2.747460 GCGCCCATTCAGCACTGA 60.747 61.111 0.00 0.00 37.91 3.41
2044 2151 2.275134 TTCAGCACTGAAATCCAGCA 57.725 45.000 10.58 0.00 45.56 4.41
2045 2152 1.817357 TCAGCACTGAAATCCAGCAG 58.183 50.000 0.00 0.00 46.81 4.24
2079 2221 1.817357 TTCAGCAGATTCAGCACAGG 58.183 50.000 3.76 0.00 0.00 4.00
2084 2226 3.015327 AGCAGATTCAGCACAGGAATTC 58.985 45.455 3.76 0.00 35.23 2.17
2085 2227 2.223203 GCAGATTCAGCACAGGAATTCG 60.223 50.000 0.00 0.00 35.23 3.34
2086 2228 2.353889 CAGATTCAGCACAGGAATTCGG 59.646 50.000 0.00 0.00 35.23 4.30
2087 2229 2.026822 AGATTCAGCACAGGAATTCGGT 60.027 45.455 0.00 0.00 35.23 4.69
2088 2230 1.522668 TTCAGCACAGGAATTCGGTG 58.477 50.000 19.14 19.14 43.04 4.94
2089 2231 0.684535 TCAGCACAGGAATTCGGTGA 59.315 50.000 24.70 17.00 42.85 4.02
2090 2232 1.081892 CAGCACAGGAATTCGGTGAG 58.918 55.000 24.70 15.51 42.85 3.51
2091 2233 0.976641 AGCACAGGAATTCGGTGAGA 59.023 50.000 24.70 0.00 42.85 3.27
2092 2234 1.066573 AGCACAGGAATTCGGTGAGAG 60.067 52.381 24.70 11.15 42.85 3.20
2093 2235 1.066858 GCACAGGAATTCGGTGAGAGA 60.067 52.381 24.70 0.00 42.85 3.10
2094 2236 2.419297 GCACAGGAATTCGGTGAGAGAT 60.419 50.000 24.70 0.00 42.85 2.75
2095 2237 3.452474 CACAGGAATTCGGTGAGAGATC 58.548 50.000 18.84 0.00 42.85 2.75
2096 2238 2.432510 ACAGGAATTCGGTGAGAGATCC 59.567 50.000 12.16 0.00 36.34 3.36
2118 2266 2.222908 GCTGTCGTCGTAGGTACTGTAC 60.223 54.545 9.46 9.46 41.52 2.90
2132 2280 9.615295 GTAGGTACTGTACTACGACTATACTAC 57.385 40.741 16.79 11.31 41.52 2.73
2133 2281 8.239038 AGGTACTGTACTACGACTATACTACA 57.761 38.462 16.79 0.00 37.18 2.74
2134 2282 8.356657 AGGTACTGTACTACGACTATACTACAG 58.643 40.741 16.79 0.00 37.18 2.74
2135 2283 8.138712 GGTACTGTACTACGACTATACTACAGT 58.861 40.741 16.79 11.76 44.05 3.55
2193 2341 1.517475 GCGCTCGTCTTCTTCCTCC 60.517 63.158 0.00 0.00 0.00 4.30
2195 2343 1.139947 GCTCGTCTTCTTCCTCCGG 59.860 63.158 0.00 0.00 0.00 5.14
2196 2344 1.139947 CTCGTCTTCTTCCTCCGGC 59.860 63.158 0.00 0.00 0.00 6.13
2197 2345 1.304217 TCGTCTTCTTCCTCCGGCT 60.304 57.895 0.00 0.00 0.00 5.52
2198 2346 1.153745 CGTCTTCTTCCTCCGGCTG 60.154 63.158 0.00 0.00 0.00 4.85
2288 2436 2.045536 GGCAGGCAAGAGTCCAGG 60.046 66.667 0.00 0.00 0.00 4.45
2298 2446 3.620966 GCAAGAGTCCAGGCTATCTTGTT 60.621 47.826 21.70 0.80 46.62 2.83
2299 2447 3.902881 AGAGTCCAGGCTATCTTGTTG 57.097 47.619 0.00 0.00 0.00 3.33
2300 2448 2.503356 AGAGTCCAGGCTATCTTGTTGG 59.497 50.000 0.00 0.00 0.00 3.77
2301 2449 1.561542 AGTCCAGGCTATCTTGTTGGG 59.438 52.381 0.00 0.00 0.00 4.12
2305 2453 1.066143 CAGGCTATCTTGTTGGGTCGT 60.066 52.381 0.00 0.00 0.00 4.34
2315 2463 2.798364 TTGGGTCGTCTTGTCCGCA 61.798 57.895 0.00 0.00 0.00 5.69
2316 2464 2.737376 GGGTCGTCTTGTCCGCAC 60.737 66.667 0.00 0.00 0.00 5.34
2318 2466 2.737376 GTCGTCTTGTCCGCACCC 60.737 66.667 0.00 0.00 0.00 4.61
2324 2472 4.555709 TTGTCCGCACCCGCTTGT 62.556 61.111 0.00 0.00 35.30 3.16
2328 2476 4.988598 CCGCACCCGCTTGTCACT 62.989 66.667 0.00 0.00 35.30 3.41
2329 2477 2.048597 CGCACCCGCTTGTCACTA 60.049 61.111 0.00 0.00 35.30 2.74
2330 2478 1.666553 CGCACCCGCTTGTCACTAA 60.667 57.895 0.00 0.00 35.30 2.24
2342 2490 3.685139 TGTCACTAAGCTTCCTCTTGG 57.315 47.619 0.00 0.00 0.00 3.61
2343 2491 2.289694 TGTCACTAAGCTTCCTCTTGGC 60.290 50.000 0.00 0.00 0.00 4.52
2344 2492 2.027653 GTCACTAAGCTTCCTCTTGGCT 60.028 50.000 0.00 0.00 37.99 4.75
2345 2493 2.234908 TCACTAAGCTTCCTCTTGGCTC 59.765 50.000 0.00 0.00 35.06 4.70
2346 2494 2.235898 CACTAAGCTTCCTCTTGGCTCT 59.764 50.000 0.00 0.00 35.06 4.09
2347 2495 2.909662 ACTAAGCTTCCTCTTGGCTCTT 59.090 45.455 0.00 0.00 35.06 2.85
2348 2496 2.488204 AAGCTTCCTCTTGGCTCTTC 57.512 50.000 0.00 0.00 35.06 2.87
2360 2508 0.179034 GGCTCTTCGGATCAATGGCT 60.179 55.000 0.00 0.00 0.00 4.75
2361 2509 1.673168 GCTCTTCGGATCAATGGCTT 58.327 50.000 0.00 0.00 0.00 4.35
2363 2511 2.910199 CTCTTCGGATCAATGGCTTCA 58.090 47.619 0.00 0.00 0.00 3.02
2365 2513 2.501316 TCTTCGGATCAATGGCTTCAGA 59.499 45.455 0.00 0.00 0.00 3.27
2366 2514 3.055167 TCTTCGGATCAATGGCTTCAGAA 60.055 43.478 0.00 0.00 0.00 3.02
2368 2516 3.889815 TCGGATCAATGGCTTCAGAATT 58.110 40.909 0.00 0.00 0.00 2.17
2369 2517 4.272489 TCGGATCAATGGCTTCAGAATTT 58.728 39.130 0.00 0.00 0.00 1.82
2370 2518 4.336433 TCGGATCAATGGCTTCAGAATTTC 59.664 41.667 0.00 0.00 0.00 2.17
2371 2519 4.337555 CGGATCAATGGCTTCAGAATTTCT 59.662 41.667 0.00 0.00 0.00 2.52
2372 2520 5.528690 CGGATCAATGGCTTCAGAATTTCTA 59.471 40.000 0.00 0.00 0.00 2.10
2373 2521 6.512415 CGGATCAATGGCTTCAGAATTTCTAC 60.512 42.308 0.00 0.00 0.00 2.59
2374 2522 6.545298 GGATCAATGGCTTCAGAATTTCTACT 59.455 38.462 0.00 0.00 0.00 2.57
2375 2523 6.992063 TCAATGGCTTCAGAATTTCTACTC 57.008 37.500 0.00 0.00 0.00 2.59
2376 2524 6.715280 TCAATGGCTTCAGAATTTCTACTCT 58.285 36.000 0.00 0.00 0.00 3.24
2378 2526 7.766278 TCAATGGCTTCAGAATTTCTACTCTAC 59.234 37.037 0.00 0.00 0.00 2.59
2381 2529 6.665680 TGGCTTCAGAATTTCTACTCTACTCT 59.334 38.462 0.00 0.00 0.00 3.24
2383 2531 8.132995 GGCTTCAGAATTTCTACTCTACTCTAC 58.867 40.741 0.00 0.00 0.00 2.59
2384 2532 8.899771 GCTTCAGAATTTCTACTCTACTCTACT 58.100 37.037 0.00 0.00 0.00 2.57
2386 2534 8.740123 TCAGAATTTCTACTCTACTCTACTGG 57.260 38.462 0.00 0.00 0.00 4.00
2387 2535 8.549731 TCAGAATTTCTACTCTACTCTACTGGA 58.450 37.037 0.00 0.00 0.00 3.86
2388 2536 9.349713 CAGAATTTCTACTCTACTCTACTGGAT 57.650 37.037 0.00 0.00 0.00 3.41
2389 2537 9.349713 AGAATTTCTACTCTACTCTACTGGATG 57.650 37.037 0.00 0.00 0.00 3.51
2397 2545 4.950475 TCTACTCTACTGGATGTGTTCTGG 59.050 45.833 0.00 0.00 0.00 3.86
2404 2552 2.681848 CTGGATGTGTTCTGGATCAAGC 59.318 50.000 0.00 0.00 0.00 4.01
2441 2592 5.618056 AAAAGGCTCATATCATATGCACG 57.382 39.130 0.00 0.00 0.00 5.34
2442 2593 2.625737 AGGCTCATATCATATGCACGC 58.374 47.619 0.00 2.90 0.00 5.34
2443 2594 2.027837 AGGCTCATATCATATGCACGCA 60.028 45.455 0.00 0.00 0.00 5.24
2444 2595 2.743664 GGCTCATATCATATGCACGCAA 59.256 45.455 0.00 0.00 0.00 4.85
2445 2596 3.376234 GGCTCATATCATATGCACGCAAT 59.624 43.478 0.00 0.00 0.00 3.56
2446 2597 4.571984 GGCTCATATCATATGCACGCAATA 59.428 41.667 0.00 0.00 0.00 1.90
2466 2617 2.989909 AGCGATGTCATCAATGTTGGA 58.010 42.857 13.22 0.00 0.00 3.53
2470 2621 3.065786 CGATGTCATCAATGTTGGAAGGG 59.934 47.826 13.22 0.00 0.00 3.95
2475 2626 0.899717 TCAATGTTGGAAGGGCCTGC 60.900 55.000 6.92 4.12 37.63 4.85
2489 2640 3.052082 CTGCGGTTGGCTCACTGG 61.052 66.667 0.00 0.00 44.05 4.00
2496 2647 4.994471 TGGCTCACTGGCAGCACG 62.994 66.667 15.89 3.40 46.76 5.34
2504 2655 3.604494 CTGGCAGCACGCACACATG 62.604 63.158 0.00 0.00 45.17 3.21
2513 2664 2.682846 GCACACATGGGGATGGGA 59.317 61.111 0.00 0.00 0.00 4.37
2518 2669 3.889692 CATGGGGATGGGACGGGG 61.890 72.222 0.00 0.00 0.00 5.73
2535 2686 2.050168 GGCGCCATGTGTTGTGTG 60.050 61.111 24.80 0.00 0.00 3.82
2536 2687 2.050168 GCGCCATGTGTTGTGTGG 60.050 61.111 0.00 0.00 36.09 4.17
2537 2688 2.644418 CGCCATGTGTTGTGTGGG 59.356 61.111 0.00 0.00 33.58 4.61
2538 2689 2.192861 CGCCATGTGTTGTGTGGGT 61.193 57.895 0.00 0.00 33.58 4.51
2547 2698 0.107831 GTTGTGTGGGTAGGACTGCA 59.892 55.000 0.00 0.00 0.00 4.41
2552 2703 1.229177 TGGGTAGGACTGCAGCTGA 60.229 57.895 20.43 1.36 0.00 4.26
2553 2704 0.835971 TGGGTAGGACTGCAGCTGAA 60.836 55.000 20.43 5.87 0.00 3.02
2564 2715 2.816689 TGCAGCTGAAATTGCATATGC 58.183 42.857 20.43 21.09 44.72 3.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.400494 ACACGAGAACAACAAAGCACC 59.600 47.619 0.00 0.00 0.00 5.01
1 2 2.159572 ACACACGAGAACAACAAAGCAC 60.160 45.455 0.00 0.00 0.00 4.40
2 3 2.080693 ACACACGAGAACAACAAAGCA 58.919 42.857 0.00 0.00 0.00 3.91
3 4 2.825086 ACACACGAGAACAACAAAGC 57.175 45.000 0.00 0.00 0.00 3.51
4 5 3.181524 ACGAACACACGAGAACAACAAAG 60.182 43.478 0.00 0.00 37.03 2.77
5 6 2.737783 ACGAACACACGAGAACAACAAA 59.262 40.909 0.00 0.00 37.03 2.83
6 7 2.092995 CACGAACACACGAGAACAACAA 59.907 45.455 0.00 0.00 37.03 2.83
7 8 1.656594 CACGAACACACGAGAACAACA 59.343 47.619 0.00 0.00 37.03 3.33
8 9 1.657094 ACACGAACACACGAGAACAAC 59.343 47.619 0.00 0.00 37.03 3.32
9 10 1.999048 ACACGAACACACGAGAACAA 58.001 45.000 0.00 0.00 37.03 2.83
10 11 1.656594 CAACACGAACACACGAGAACA 59.343 47.619 0.00 0.00 37.03 3.18
11 12 1.005347 CCAACACGAACACACGAGAAC 60.005 52.381 0.00 0.00 37.03 3.01
12 13 1.282817 CCAACACGAACACACGAGAA 58.717 50.000 0.00 0.00 37.03 2.87
13 14 0.528901 CCCAACACGAACACACGAGA 60.529 55.000 0.00 0.00 37.03 4.04
14 15 1.495584 CCCCAACACGAACACACGAG 61.496 60.000 0.00 0.00 37.03 4.18
15 16 1.521906 CCCCAACACGAACACACGA 60.522 57.895 0.00 0.00 37.03 4.35
16 17 2.539338 CCCCCAACACGAACACACG 61.539 63.158 0.00 0.00 39.31 4.49
17 18 3.427670 CCCCCAACACGAACACAC 58.572 61.111 0.00 0.00 0.00 3.82
41 42 4.875713 AATCGCCATGTCGCCCCC 62.876 66.667 0.00 0.00 0.00 5.40
42 43 1.944234 AAAAATCGCCATGTCGCCCC 61.944 55.000 0.00 0.00 0.00 5.80
43 44 0.525455 GAAAAATCGCCATGTCGCCC 60.525 55.000 0.00 0.00 0.00 6.13
44 45 0.861450 CGAAAAATCGCCATGTCGCC 60.861 55.000 0.00 0.00 0.00 5.54
45 46 0.096281 TCGAAAAATCGCCATGTCGC 59.904 50.000 0.00 0.00 0.00 5.19
46 47 1.393539 AGTCGAAAAATCGCCATGTCG 59.606 47.619 0.00 0.00 0.00 4.35
47 48 2.159627 ACAGTCGAAAAATCGCCATGTC 59.840 45.455 0.00 0.00 0.00 3.06
48 49 2.151202 ACAGTCGAAAAATCGCCATGT 58.849 42.857 0.00 0.00 0.00 3.21
49 50 2.416547 AGACAGTCGAAAAATCGCCATG 59.583 45.455 0.00 0.00 0.00 3.66
50 51 2.699954 AGACAGTCGAAAAATCGCCAT 58.300 42.857 0.00 0.00 0.00 4.40
51 52 2.163818 AGACAGTCGAAAAATCGCCA 57.836 45.000 0.00 0.00 0.00 5.69
52 53 3.251571 AGTAGACAGTCGAAAAATCGCC 58.748 45.455 0.00 0.00 0.00 5.54
53 54 5.330295 TCTAGTAGACAGTCGAAAAATCGC 58.670 41.667 0.00 0.00 0.00 4.58
54 55 6.800408 TGTTCTAGTAGACAGTCGAAAAATCG 59.200 38.462 0.00 0.00 0.00 3.34
55 56 8.516811 TTGTTCTAGTAGACAGTCGAAAAATC 57.483 34.615 0.00 0.00 0.00 2.17
56 57 8.142551 ACTTGTTCTAGTAGACAGTCGAAAAAT 58.857 33.333 0.00 0.00 0.00 1.82
57 58 7.486647 ACTTGTTCTAGTAGACAGTCGAAAAA 58.513 34.615 0.00 0.00 0.00 1.94
58 59 7.035840 ACTTGTTCTAGTAGACAGTCGAAAA 57.964 36.000 0.00 0.00 0.00 2.29
59 60 6.630444 ACTTGTTCTAGTAGACAGTCGAAA 57.370 37.500 0.00 0.00 0.00 3.46
60 61 7.918536 ATACTTGTTCTAGTAGACAGTCGAA 57.081 36.000 0.00 0.00 34.32 3.71
61 62 7.625817 GCAATACTTGTTCTAGTAGACAGTCGA 60.626 40.741 0.00 0.00 34.32 4.20
62 63 6.469595 GCAATACTTGTTCTAGTAGACAGTCG 59.530 42.308 0.00 0.00 34.32 4.18
63 64 6.469595 CGCAATACTTGTTCTAGTAGACAGTC 59.530 42.308 0.00 0.00 34.32 3.51
64 65 6.323266 CGCAATACTTGTTCTAGTAGACAGT 58.677 40.000 0.00 5.37 34.32 3.55
65 66 5.230306 GCGCAATACTTGTTCTAGTAGACAG 59.770 44.000 0.30 0.00 34.32 3.51
66 67 5.100259 GCGCAATACTTGTTCTAGTAGACA 58.900 41.667 0.30 0.00 34.32 3.41
67 68 4.204573 CGCGCAATACTTGTTCTAGTAGAC 59.795 45.833 8.75 0.00 34.32 2.59
68 69 4.095334 TCGCGCAATACTTGTTCTAGTAGA 59.905 41.667 8.75 0.00 34.32 2.59
69 70 4.204573 GTCGCGCAATACTTGTTCTAGTAG 59.795 45.833 8.75 0.00 34.32 2.57
70 71 4.100529 GTCGCGCAATACTTGTTCTAGTA 58.899 43.478 8.75 0.00 35.25 1.82
71 72 2.921754 GTCGCGCAATACTTGTTCTAGT 59.078 45.455 8.75 0.00 0.00 2.57
72 73 3.179830 AGTCGCGCAATACTTGTTCTAG 58.820 45.455 8.75 0.00 0.00 2.43
73 74 3.176708 GAGTCGCGCAATACTTGTTCTA 58.823 45.455 8.75 0.00 0.00 2.10
74 75 1.993370 GAGTCGCGCAATACTTGTTCT 59.007 47.619 8.75 0.00 0.00 3.01
75 76 1.060698 GGAGTCGCGCAATACTTGTTC 59.939 52.381 8.75 0.00 0.00 3.18
76 77 1.076332 GGAGTCGCGCAATACTTGTT 58.924 50.000 8.75 0.00 0.00 2.83
77 78 0.037697 TGGAGTCGCGCAATACTTGT 60.038 50.000 8.75 0.00 0.00 3.16
78 79 1.075542 TTGGAGTCGCGCAATACTTG 58.924 50.000 8.75 0.00 0.00 3.16
79 80 1.665679 CATTGGAGTCGCGCAATACTT 59.334 47.619 8.75 0.00 0.00 2.24
80 81 1.290203 CATTGGAGTCGCGCAATACT 58.710 50.000 8.75 7.57 0.00 2.12
81 82 0.316196 GCATTGGAGTCGCGCAATAC 60.316 55.000 8.75 1.73 0.00 1.89
82 83 0.742635 TGCATTGGAGTCGCGCAATA 60.743 50.000 8.75 0.00 0.00 1.90
83 84 1.585267 TTGCATTGGAGTCGCGCAAT 61.585 50.000 8.75 1.99 37.64 3.56
84 85 2.186350 CTTGCATTGGAGTCGCGCAA 62.186 55.000 8.75 0.00 40.08 4.85
85 86 2.667874 TTGCATTGGAGTCGCGCA 60.668 55.556 8.75 0.00 0.00 6.09
86 87 2.099062 CTTGCATTGGAGTCGCGC 59.901 61.111 0.00 0.00 0.00 6.86
87 88 1.699656 CCTCTTGCATTGGAGTCGCG 61.700 60.000 0.00 0.00 0.00 5.87
88 89 1.372087 CCCTCTTGCATTGGAGTCGC 61.372 60.000 9.80 0.00 0.00 5.19
89 90 0.745845 CCCCTCTTGCATTGGAGTCG 60.746 60.000 9.80 0.00 0.00 4.18
90 91 1.034292 GCCCCTCTTGCATTGGAGTC 61.034 60.000 9.80 0.00 0.00 3.36
91 92 1.000396 GCCCCTCTTGCATTGGAGT 60.000 57.895 9.80 0.00 0.00 3.85
92 93 2.117156 CGCCCCTCTTGCATTGGAG 61.117 63.158 0.00 0.00 0.00 3.86
93 94 1.925285 ATCGCCCCTCTTGCATTGGA 61.925 55.000 0.00 0.00 0.00 3.53
94 95 1.454479 ATCGCCCCTCTTGCATTGG 60.454 57.895 0.00 0.00 0.00 3.16
95 96 0.749091 TCATCGCCCCTCTTGCATTG 60.749 55.000 0.00 0.00 0.00 2.82
96 97 0.749454 GTCATCGCCCCTCTTGCATT 60.749 55.000 0.00 0.00 0.00 3.56
97 98 1.153086 GTCATCGCCCCTCTTGCAT 60.153 57.895 0.00 0.00 0.00 3.96
98 99 2.268920 GTCATCGCCCCTCTTGCA 59.731 61.111 0.00 0.00 0.00 4.08
99 100 2.892425 CGTCATCGCCCCTCTTGC 60.892 66.667 0.00 0.00 0.00 4.01
100 101 2.202932 CCGTCATCGCCCCTCTTG 60.203 66.667 0.00 0.00 35.54 3.02
101 102 4.162690 GCCGTCATCGCCCCTCTT 62.163 66.667 0.00 0.00 35.54 2.85
103 104 4.467084 TTGCCGTCATCGCCCCTC 62.467 66.667 0.00 0.00 35.54 4.30
104 105 4.778143 GTTGCCGTCATCGCCCCT 62.778 66.667 0.00 0.00 35.54 4.79
106 107 2.824041 ATGTTGCCGTCATCGCCC 60.824 61.111 0.00 0.00 35.54 6.13
107 108 1.439353 ATCATGTTGCCGTCATCGCC 61.439 55.000 0.00 0.00 35.54 5.54
108 109 0.041839 GATCATGTTGCCGTCATCGC 60.042 55.000 0.00 0.00 35.54 4.58
109 110 0.583438 GGATCATGTTGCCGTCATCG 59.417 55.000 0.00 0.00 0.00 3.84
110 111 1.331756 GTGGATCATGTTGCCGTCATC 59.668 52.381 0.00 0.00 0.00 2.92
111 112 1.339920 TGTGGATCATGTTGCCGTCAT 60.340 47.619 0.00 0.00 0.00 3.06
112 113 0.036022 TGTGGATCATGTTGCCGTCA 59.964 50.000 0.00 0.00 0.00 4.35
113 114 1.064505 CATGTGGATCATGTTGCCGTC 59.935 52.381 0.00 0.00 46.18 4.79
114 115 1.097232 CATGTGGATCATGTTGCCGT 58.903 50.000 0.00 0.00 46.18 5.68
115 116 3.930400 CATGTGGATCATGTTGCCG 57.070 52.632 0.00 0.00 46.18 5.69
122 123 5.104235 TCAACTCCATTCTCATGTGGATCAT 60.104 40.000 3.42 0.00 43.20 2.45
123 124 4.225717 TCAACTCCATTCTCATGTGGATCA 59.774 41.667 3.42 0.00 43.20 2.92
124 125 4.774124 TCAACTCCATTCTCATGTGGATC 58.226 43.478 3.42 0.00 43.20 3.36
125 126 4.849813 TCAACTCCATTCTCATGTGGAT 57.150 40.909 3.42 0.00 43.20 3.41
126 127 4.384537 GGATCAACTCCATTCTCATGTGGA 60.385 45.833 3.02 3.02 44.26 4.02
127 128 3.881688 GGATCAACTCCATTCTCATGTGG 59.118 47.826 0.00 0.00 44.26 4.17
139 140 5.712152 ATTTGTTGTCTTGGATCAACTCC 57.288 39.130 8.96 0.00 45.19 3.85
152 153 6.640907 GTGGTGGATCAGTTTTATTTGTTGTC 59.359 38.462 0.00 0.00 0.00 3.18
153 154 6.097554 TGTGGTGGATCAGTTTTATTTGTTGT 59.902 34.615 0.00 0.00 0.00 3.32
199 200 5.585844 GGTGATGAATTGGCCTAATTTTTGG 59.414 40.000 3.32 0.00 39.06 3.28
206 207 3.763360 CACAAGGTGATGAATTGGCCTAA 59.237 43.478 3.32 0.00 35.23 2.69
209 211 2.170166 TCACAAGGTGATGAATTGGCC 58.830 47.619 0.00 0.00 37.67 5.36
256 263 2.618053 GTCTGGTGTGGTGTACTATGC 58.382 52.381 0.00 0.00 0.00 3.14
257 264 2.093658 GGGTCTGGTGTGGTGTACTATG 60.094 54.545 0.00 0.00 0.00 2.23
261 268 0.470766 TTGGGTCTGGTGTGGTGTAC 59.529 55.000 0.00 0.00 0.00 2.90
262 269 1.214217 TTTGGGTCTGGTGTGGTGTA 58.786 50.000 0.00 0.00 0.00 2.90
264 271 1.032014 CTTTTGGGTCTGGTGTGGTG 58.968 55.000 0.00 0.00 0.00 4.17
265 272 0.106217 CCTTTTGGGTCTGGTGTGGT 60.106 55.000 0.00 0.00 35.46 4.16
266 273 0.184933 TCCTTTTGGGTCTGGTGTGG 59.815 55.000 0.00 0.00 40.87 4.17
340 347 1.618837 ACGCAGCCTTTCTCAGTTCTA 59.381 47.619 0.00 0.00 0.00 2.10
341 348 0.394565 ACGCAGCCTTTCTCAGTTCT 59.605 50.000 0.00 0.00 0.00 3.01
342 349 1.230324 AACGCAGCCTTTCTCAGTTC 58.770 50.000 0.00 0.00 0.00 3.01
360 367 3.259876 GGTGTAGATGGTGTGGAGTGTAA 59.740 47.826 0.00 0.00 0.00 2.41
364 371 1.276622 GGGTGTAGATGGTGTGGAGT 58.723 55.000 0.00 0.00 0.00 3.85
365 372 0.541863 GGGGTGTAGATGGTGTGGAG 59.458 60.000 0.00 0.00 0.00 3.86
423 430 2.201436 CTCTCTCCACCACACCGACG 62.201 65.000 0.00 0.00 0.00 5.12
431 438 3.769844 CCTAAAAGTAGCTCTCTCCACCA 59.230 47.826 0.00 0.00 0.00 4.17
434 441 4.417437 ACACCTAAAAGTAGCTCTCTCCA 58.583 43.478 0.00 0.00 0.00 3.86
437 444 5.419471 CACCTACACCTAAAAGTAGCTCTCT 59.581 44.000 0.00 0.00 37.09 3.10
438 445 5.394333 CCACCTACACCTAAAAGTAGCTCTC 60.394 48.000 0.00 0.00 37.09 3.20
439 446 4.466726 CCACCTACACCTAAAAGTAGCTCT 59.533 45.833 0.00 0.00 37.09 4.09
440 447 4.756502 CCACCTACACCTAAAAGTAGCTC 58.243 47.826 0.00 0.00 37.09 4.09
442 449 3.268330 GCCACCTACACCTAAAAGTAGC 58.732 50.000 0.00 0.00 37.09 3.58
444 451 2.234414 CCGCCACCTACACCTAAAAGTA 59.766 50.000 0.00 0.00 0.00 2.24
445 452 1.002773 CCGCCACCTACACCTAAAAGT 59.997 52.381 0.00 0.00 0.00 2.66
446 453 1.002773 ACCGCCACCTACACCTAAAAG 59.997 52.381 0.00 0.00 0.00 2.27
449 456 1.597797 CGACCGCCACCTACACCTAA 61.598 60.000 0.00 0.00 0.00 2.69
451 458 3.379445 CGACCGCCACCTACACCT 61.379 66.667 0.00 0.00 0.00 4.00
484 491 7.148407 GGGCGTTATTATGTCCATCAGATTTAG 60.148 40.741 0.00 0.00 35.01 1.85
497 504 3.181455 TGCATCTCTGGGCGTTATTATGT 60.181 43.478 0.00 0.00 0.00 2.29
582 593 3.071206 GCAGAGCACGAGGGAGGA 61.071 66.667 0.00 0.00 0.00 3.71
583 594 2.177594 AAAGCAGAGCACGAGGGAGG 62.178 60.000 0.00 0.00 0.00 4.30
584 595 0.321122 AAAAGCAGAGCACGAGGGAG 60.321 55.000 0.00 0.00 0.00 4.30
585 596 0.108585 AAAAAGCAGAGCACGAGGGA 59.891 50.000 0.00 0.00 0.00 4.20
628 639 1.081892 CTGTGCAAGATGGACGGAAG 58.918 55.000 5.01 0.00 46.38 3.46
630 641 1.067142 GTACTGTGCAAGATGGACGGA 60.067 52.381 16.29 0.00 46.38 4.69
632 643 1.066858 AGGTACTGTGCAAGATGGACG 60.067 52.381 0.00 0.00 41.94 4.79
633 644 2.622436 GAGGTACTGTGCAAGATGGAC 58.378 52.381 0.00 0.00 41.55 4.02
637 648 0.108138 GGCGAGGTACTGTGCAAGAT 60.108 55.000 0.00 0.00 41.55 2.40
690 701 2.159170 GGTAGAGTACTTGCAGCTGAGG 60.159 54.545 20.43 8.68 0.00 3.86
823 834 2.612095 CTAGACCGCCGACTCTCCCT 62.612 65.000 0.00 0.00 0.00 4.20
831 842 2.125326 CATGGACCTAGACCGCCGA 61.125 63.158 0.00 0.00 0.00 5.54
835 846 0.747255 CTGGACATGGACCTAGACCG 59.253 60.000 11.44 0.00 0.00 4.79
840 851 1.676678 GCTCGCTGGACATGGACCTA 61.677 60.000 11.44 0.10 0.00 3.08
899 910 0.608640 GGCGTCCTCCTTCTTCTTCA 59.391 55.000 0.00 0.00 0.00 3.02
1097 1126 3.535629 CTGTGCACCCGGAAGAGCA 62.536 63.158 15.69 4.24 34.10 4.26
1216 1245 1.750399 GGCACTGGAACCGCATCAT 60.750 57.895 0.00 0.00 0.00 2.45
1518 1547 0.032952 TGTACACCACGAGGAAGCAC 59.967 55.000 5.68 0.00 38.69 4.40
1576 1605 4.467084 GGCAAGGGCGTCGGATCA 62.467 66.667 0.00 0.00 42.47 2.92
1578 1607 3.797353 ATGGCAAGGGCGTCGGAT 61.797 61.111 0.00 0.00 42.47 4.18
1579 1608 4.776322 CATGGCAAGGGCGTCGGA 62.776 66.667 0.00 0.00 42.47 4.55
1582 1611 1.728490 GAATCCATGGCAAGGGCGTC 61.728 60.000 6.96 0.52 42.47 5.19
1583 1612 1.754234 GAATCCATGGCAAGGGCGT 60.754 57.895 6.96 0.00 42.47 5.68
1585 1614 0.685458 AGTGAATCCATGGCAAGGGC 60.685 55.000 6.96 0.00 40.13 5.19
1586 1615 1.108776 CAGTGAATCCATGGCAAGGG 58.891 55.000 6.96 5.53 0.00 3.95
1588 1617 1.399440 CGACAGTGAATCCATGGCAAG 59.601 52.381 6.96 0.00 0.00 4.01
1589 1618 1.271325 ACGACAGTGAATCCATGGCAA 60.271 47.619 6.96 0.00 0.00 4.52
1590 1619 0.324614 ACGACAGTGAATCCATGGCA 59.675 50.000 6.96 0.00 0.00 4.92
1591 1620 3.159298 ACGACAGTGAATCCATGGC 57.841 52.632 6.96 0.00 0.00 4.40
1611 1640 1.280710 AGTGGCGGTGATGGTGATTAA 59.719 47.619 0.00 0.00 0.00 1.40
1612 1641 0.908910 AGTGGCGGTGATGGTGATTA 59.091 50.000 0.00 0.00 0.00 1.75
1613 1642 0.392998 GAGTGGCGGTGATGGTGATT 60.393 55.000 0.00 0.00 0.00 2.57
1614 1643 1.221840 GAGTGGCGGTGATGGTGAT 59.778 57.895 0.00 0.00 0.00 3.06
1615 1644 2.213513 TGAGTGGCGGTGATGGTGA 61.214 57.895 0.00 0.00 0.00 4.02
1616 1645 2.034879 GTGAGTGGCGGTGATGGTG 61.035 63.158 0.00 0.00 0.00 4.17
1617 1646 0.902984 TAGTGAGTGGCGGTGATGGT 60.903 55.000 0.00 0.00 0.00 3.55
1620 1649 1.139058 GGATTAGTGAGTGGCGGTGAT 59.861 52.381 0.00 0.00 0.00 3.06
1622 1651 0.806102 CGGATTAGTGAGTGGCGGTG 60.806 60.000 0.00 0.00 0.00 4.94
1623 1652 1.515954 CGGATTAGTGAGTGGCGGT 59.484 57.895 0.00 0.00 0.00 5.68
1624 1653 1.883084 GCGGATTAGTGAGTGGCGG 60.883 63.158 0.00 0.00 0.00 6.13
1626 1655 2.159085 AGTTAGCGGATTAGTGAGTGGC 60.159 50.000 0.00 0.00 0.00 5.01
1667 1709 3.177228 CTGGGGGAAGGAAGATCGATAT 58.823 50.000 0.00 0.00 0.00 1.63
1668 1710 2.090719 ACTGGGGGAAGGAAGATCGATA 60.091 50.000 0.00 0.00 0.00 2.92
1688 1730 2.162608 CGATCTATCGGTCATGGAGGAC 59.837 54.545 4.43 0.00 45.93 3.85
1716 1758 3.467374 TTACAGTCTCACATGCACACA 57.533 42.857 0.00 0.00 0.00 3.72
1795 1839 3.244700 ACTCAAGTAGTGGCTGCATTTCT 60.245 43.478 0.50 0.00 36.93 2.52
1796 1840 3.077359 ACTCAAGTAGTGGCTGCATTTC 58.923 45.455 0.50 0.00 36.93 2.17
1806 1861 5.106515 TGAGACGATCTGAACTCAAGTAGTG 60.107 44.000 0.00 0.00 38.88 2.74
1822 1877 4.611943 CACCGAAAGTATGATGAGACGAT 58.388 43.478 0.00 0.00 0.00 3.73
1823 1878 3.733988 GCACCGAAAGTATGATGAGACGA 60.734 47.826 0.00 0.00 0.00 4.20
1825 1880 2.866762 GGCACCGAAAGTATGATGAGAC 59.133 50.000 0.00 0.00 0.00 3.36
1826 1881 2.158957 GGGCACCGAAAGTATGATGAGA 60.159 50.000 0.00 0.00 40.86 3.27
1874 1942 3.211865 TGCATTTGTTTGTACGGTGGTA 58.788 40.909 0.00 0.00 0.00 3.25
1875 1943 2.025155 TGCATTTGTTTGTACGGTGGT 58.975 42.857 0.00 0.00 0.00 4.16
1877 1945 3.347958 ACTGCATTTGTTTGTACGGTG 57.652 42.857 0.00 0.00 0.00 4.94
1878 1946 3.378742 TGAACTGCATTTGTTTGTACGGT 59.621 39.130 0.00 0.00 0.00 4.83
1879 1947 3.958704 TGAACTGCATTTGTTTGTACGG 58.041 40.909 0.00 0.00 0.00 4.02
1880 1948 5.451908 AGATGAACTGCATTTGTTTGTACG 58.548 37.500 0.00 0.00 37.34 3.67
1881 1949 6.672147 AGAGATGAACTGCATTTGTTTGTAC 58.328 36.000 0.00 0.00 37.34 2.90
1883 1951 5.779529 AGAGATGAACTGCATTTGTTTGT 57.220 34.783 0.00 0.00 37.34 2.83
1885 1953 7.516198 AGTAAGAGATGAACTGCATTTGTTT 57.484 32.000 0.00 0.00 37.34 2.83
1907 1999 0.678048 GCGGATTGGGCTCTGAAAGT 60.678 55.000 0.00 0.00 33.76 2.66
1914 2006 1.322538 AACAATGGCGGATTGGGCTC 61.323 55.000 10.79 0.00 45.20 4.70
1915 2007 0.904394 AAACAATGGCGGATTGGGCT 60.904 50.000 10.79 0.00 45.20 5.19
1916 2008 0.036483 AAAACAATGGCGGATTGGGC 60.036 50.000 10.79 0.00 45.20 5.36
2005 2110 3.195698 GGCGCTGATTGACGGACC 61.196 66.667 7.64 0.00 0.00 4.46
2009 2114 1.353103 GAATGGGCGCTGATTGACG 59.647 57.895 7.64 0.00 0.00 4.35
2025 2132 2.156917 CTGCTGGATTTCAGTGCTGAA 58.843 47.619 10.26 10.26 46.72 3.02
2026 2133 1.348696 TCTGCTGGATTTCAGTGCTGA 59.651 47.619 0.00 0.00 45.08 4.26
2027 2134 1.817357 TCTGCTGGATTTCAGTGCTG 58.183 50.000 0.00 0.00 45.08 4.41
2028 2135 2.803030 ATCTGCTGGATTTCAGTGCT 57.197 45.000 0.00 0.00 45.08 4.40
2029 2136 2.751259 TGAATCTGCTGGATTTCAGTGC 59.249 45.455 6.87 0.00 43.90 4.40
2030 2137 3.181499 GCTGAATCTGCTGGATTTCAGTG 60.181 47.826 21.14 0.00 43.90 3.66
2031 2138 3.015327 GCTGAATCTGCTGGATTTCAGT 58.985 45.455 21.14 0.17 43.90 3.41
2032 2139 3.014623 TGCTGAATCTGCTGGATTTCAG 58.985 45.455 13.10 18.51 43.90 3.02
2033 2140 2.751259 GTGCTGAATCTGCTGGATTTCA 59.249 45.455 13.10 5.92 43.90 2.69
2034 2141 2.751259 TGTGCTGAATCTGCTGGATTTC 59.249 45.455 13.10 2.31 43.90 2.17
2035 2142 2.753452 CTGTGCTGAATCTGCTGGATTT 59.247 45.455 13.10 0.00 43.90 2.17
2036 2143 2.026542 TCTGTGCTGAATCTGCTGGATT 60.027 45.455 13.10 5.44 46.24 3.01
2037 2144 1.558294 TCTGTGCTGAATCTGCTGGAT 59.442 47.619 13.10 0.00 35.97 3.41
2038 2145 0.978907 TCTGTGCTGAATCTGCTGGA 59.021 50.000 13.10 6.05 0.00 3.86
2039 2146 1.817357 TTCTGTGCTGAATCTGCTGG 58.183 50.000 13.10 4.03 0.00 4.85
2040 2147 4.082949 TGAATTTCTGTGCTGAATCTGCTG 60.083 41.667 13.10 4.34 0.00 4.41
2041 2148 4.077108 TGAATTTCTGTGCTGAATCTGCT 58.923 39.130 13.10 0.00 0.00 4.24
2042 2149 4.413087 CTGAATTTCTGTGCTGAATCTGC 58.587 43.478 5.11 5.11 0.00 4.26
2043 2150 4.082949 TGCTGAATTTCTGTGCTGAATCTG 60.083 41.667 5.36 0.00 0.00 2.90
2044 2151 4.077108 TGCTGAATTTCTGTGCTGAATCT 58.923 39.130 5.36 0.00 0.00 2.40
2045 2152 4.155462 TCTGCTGAATTTCTGTGCTGAATC 59.845 41.667 12.58 0.00 0.00 2.52
2085 2227 1.064946 CGACAGCGGATCTCTCACC 59.935 63.158 0.00 0.00 0.00 4.02
2086 2228 0.248296 GACGACAGCGGATCTCTCAC 60.248 60.000 0.00 0.00 43.17 3.51
2087 2229 1.706287 CGACGACAGCGGATCTCTCA 61.706 60.000 0.00 0.00 43.17 3.27
2088 2230 1.010574 CGACGACAGCGGATCTCTC 60.011 63.158 0.00 0.00 43.17 3.20
2089 2231 0.461516 TACGACGACAGCGGATCTCT 60.462 55.000 0.00 0.00 43.17 3.10
2090 2232 0.042013 CTACGACGACAGCGGATCTC 60.042 60.000 0.00 0.00 43.17 2.75
2091 2233 1.437772 CCTACGACGACAGCGGATCT 61.438 60.000 0.00 0.00 43.17 2.75
2092 2234 1.009900 CCTACGACGACAGCGGATC 60.010 63.158 0.00 0.00 43.17 3.36
2093 2235 0.462581 TACCTACGACGACAGCGGAT 60.463 55.000 0.00 0.00 43.17 4.18
2094 2236 1.079197 TACCTACGACGACAGCGGA 60.079 57.895 0.00 0.00 43.17 5.54
2095 2237 1.061570 GTACCTACGACGACAGCGG 59.938 63.158 0.00 0.00 43.17 5.52
2096 2238 0.247576 CAGTACCTACGACGACAGCG 60.248 60.000 0.00 0.00 44.79 5.18
2127 2275 8.618677 CACCTTCGTAGATTGATTACTGTAGTA 58.381 37.037 0.00 0.00 35.04 1.82
2128 2276 7.338703 TCACCTTCGTAGATTGATTACTGTAGT 59.661 37.037 0.00 0.00 35.04 2.73
2129 2277 7.644551 GTCACCTTCGTAGATTGATTACTGTAG 59.355 40.741 0.00 0.00 35.04 2.74
2130 2278 7.478322 GTCACCTTCGTAGATTGATTACTGTA 58.522 38.462 0.00 0.00 35.04 2.74
2131 2279 6.331061 GTCACCTTCGTAGATTGATTACTGT 58.669 40.000 0.00 0.00 35.04 3.55
2132 2280 5.455849 CGTCACCTTCGTAGATTGATTACTG 59.544 44.000 0.00 0.00 35.04 2.74
2133 2281 5.579718 CGTCACCTTCGTAGATTGATTACT 58.420 41.667 0.00 0.00 35.04 2.24
2134 2282 4.206609 GCGTCACCTTCGTAGATTGATTAC 59.793 45.833 0.00 0.00 35.04 1.89
2135 2283 4.142337 TGCGTCACCTTCGTAGATTGATTA 60.142 41.667 0.00 0.00 35.04 1.75
2136 2284 3.187700 GCGTCACCTTCGTAGATTGATT 58.812 45.455 0.00 0.00 35.04 2.57
2137 2285 2.165641 TGCGTCACCTTCGTAGATTGAT 59.834 45.455 0.00 0.00 35.04 2.57
2138 2286 1.542472 TGCGTCACCTTCGTAGATTGA 59.458 47.619 0.00 0.00 35.04 2.57
2235 2383 4.785453 CCGTTCCTCTGGCCCTGC 62.785 72.222 0.00 0.00 0.00 4.85
2237 2385 3.003763 GTCCGTTCCTCTGGCCCT 61.004 66.667 0.00 0.00 0.00 5.19
2239 2387 1.671379 GTTGTCCGTTCCTCTGGCC 60.671 63.158 0.00 0.00 0.00 5.36
2288 2436 2.673368 CAAGACGACCCAACAAGATAGC 59.327 50.000 0.00 0.00 0.00 2.97
2298 2446 3.228017 TGCGGACAAGACGACCCA 61.228 61.111 0.00 0.00 0.00 4.51
2299 2447 2.737376 GTGCGGACAAGACGACCC 60.737 66.667 0.63 0.00 0.00 4.46
2300 2448 2.737376 GGTGCGGACAAGACGACC 60.737 66.667 9.96 0.00 0.00 4.79
2301 2449 2.737376 GGGTGCGGACAAGACGAC 60.737 66.667 9.96 0.00 0.00 4.34
2315 2463 4.695560 GCTTAGTGACAAGCGGGT 57.304 55.556 4.51 0.00 41.38 5.28
2324 2472 2.234908 GAGCCAAGAGGAAGCTTAGTGA 59.765 50.000 0.00 0.00 36.87 3.41
2328 2476 2.093973 CGAAGAGCCAAGAGGAAGCTTA 60.094 50.000 0.00 0.00 36.87 3.09
2329 2477 1.338579 CGAAGAGCCAAGAGGAAGCTT 60.339 52.381 0.00 0.00 36.87 3.74
2330 2478 0.248843 CGAAGAGCCAAGAGGAAGCT 59.751 55.000 0.00 0.00 40.24 3.74
2342 2490 1.601430 GAAGCCATTGATCCGAAGAGC 59.399 52.381 0.00 0.00 0.00 4.09
2343 2491 2.871022 CTGAAGCCATTGATCCGAAGAG 59.129 50.000 0.00 0.00 0.00 2.85
2344 2492 2.501316 TCTGAAGCCATTGATCCGAAGA 59.499 45.455 0.00 0.00 0.00 2.87
2345 2493 2.910199 TCTGAAGCCATTGATCCGAAG 58.090 47.619 0.00 0.00 0.00 3.79
2346 2494 3.348647 TTCTGAAGCCATTGATCCGAA 57.651 42.857 0.00 0.00 0.00 4.30
2347 2495 3.565764 ATTCTGAAGCCATTGATCCGA 57.434 42.857 0.00 0.00 0.00 4.55
2348 2496 4.337555 AGAAATTCTGAAGCCATTGATCCG 59.662 41.667 0.00 0.00 0.00 4.18
2360 2508 9.179909 CCAGTAGAGTAGAGTAGAAATTCTGAA 57.820 37.037 5.64 0.00 0.00 3.02
2361 2509 8.549731 TCCAGTAGAGTAGAGTAGAAATTCTGA 58.450 37.037 5.64 0.00 0.00 3.27
2363 2511 9.349713 CATCCAGTAGAGTAGAGTAGAAATTCT 57.650 37.037 0.00 0.00 0.00 2.40
2365 2513 8.908903 CACATCCAGTAGAGTAGAGTAGAAATT 58.091 37.037 0.00 0.00 0.00 1.82
2366 2514 8.056400 ACACATCCAGTAGAGTAGAGTAGAAAT 58.944 37.037 0.00 0.00 0.00 2.17
2368 2516 6.959904 ACACATCCAGTAGAGTAGAGTAGAA 58.040 40.000 0.00 0.00 0.00 2.10
2369 2517 6.563037 ACACATCCAGTAGAGTAGAGTAGA 57.437 41.667 0.00 0.00 0.00 2.59
2370 2518 7.011950 CAGAACACATCCAGTAGAGTAGAGTAG 59.988 44.444 0.00 0.00 0.00 2.57
2371 2519 6.824196 CAGAACACATCCAGTAGAGTAGAGTA 59.176 42.308 0.00 0.00 0.00 2.59
2372 2520 5.650266 CAGAACACATCCAGTAGAGTAGAGT 59.350 44.000 0.00 0.00 0.00 3.24
2373 2521 5.067153 CCAGAACACATCCAGTAGAGTAGAG 59.933 48.000 0.00 0.00 0.00 2.43
2374 2522 4.950475 CCAGAACACATCCAGTAGAGTAGA 59.050 45.833 0.00 0.00 0.00 2.59
2375 2523 4.950475 TCCAGAACACATCCAGTAGAGTAG 59.050 45.833 0.00 0.00 0.00 2.57
2376 2524 4.930696 TCCAGAACACATCCAGTAGAGTA 58.069 43.478 0.00 0.00 0.00 2.59
2378 2526 4.403752 TGATCCAGAACACATCCAGTAGAG 59.596 45.833 0.00 0.00 0.00 2.43
2381 2529 4.623886 GCTTGATCCAGAACACATCCAGTA 60.624 45.833 0.00 0.00 0.00 2.74
2383 2531 2.681848 GCTTGATCCAGAACACATCCAG 59.318 50.000 0.00 0.00 0.00 3.86
2384 2532 2.715046 GCTTGATCCAGAACACATCCA 58.285 47.619 0.00 0.00 0.00 3.41
2386 2534 2.621338 TCGCTTGATCCAGAACACATC 58.379 47.619 0.00 0.00 0.00 3.06
2387 2535 2.768253 TCGCTTGATCCAGAACACAT 57.232 45.000 0.00 0.00 0.00 3.21
2388 2536 2.028203 TCATCGCTTGATCCAGAACACA 60.028 45.455 0.00 0.00 0.00 3.72
2389 2537 2.621338 TCATCGCTTGATCCAGAACAC 58.379 47.619 0.00 0.00 0.00 3.32
2421 2572 3.005554 GCGTGCATATGATATGAGCCTT 58.994 45.455 16.22 0.00 0.00 4.35
2423 2574 2.349590 TGCGTGCATATGATATGAGCC 58.650 47.619 16.22 0.00 0.00 4.70
2424 2575 4.611310 ATTGCGTGCATATGATATGAGC 57.389 40.909 16.22 15.98 0.00 4.26
2425 2576 5.735324 GCTATTGCGTGCATATGATATGAG 58.265 41.667 16.22 7.46 0.00 2.90
2426 2577 5.723492 GCTATTGCGTGCATATGATATGA 57.277 39.130 16.22 0.00 0.00 2.15
2441 2592 4.478843 ACATTGATGACATCGCTATTGC 57.521 40.909 10.79 0.00 0.00 3.56
2442 2593 5.007921 TCCAACATTGATGACATCGCTATTG 59.992 40.000 10.79 11.60 0.00 1.90
2443 2594 5.125356 TCCAACATTGATGACATCGCTATT 58.875 37.500 10.79 0.72 0.00 1.73
2444 2595 4.707105 TCCAACATTGATGACATCGCTAT 58.293 39.130 10.79 1.94 0.00 2.97
2445 2596 4.135747 TCCAACATTGATGACATCGCTA 57.864 40.909 10.79 0.00 0.00 4.26
2446 2597 2.989909 TCCAACATTGATGACATCGCT 58.010 42.857 10.79 0.00 0.00 4.93
2475 2626 3.052082 CTGCCAGTGAGCCAACCG 61.052 66.667 0.00 0.00 0.00 4.44
2482 2633 3.720193 GTGCGTGCTGCCAGTGAG 61.720 66.667 0.00 0.00 45.60 3.51
2489 2640 4.409218 CCCATGTGTGCGTGCTGC 62.409 66.667 0.00 0.00 46.70 5.25
2496 2647 1.754234 GTCCCATCCCCATGTGTGC 60.754 63.158 0.00 0.00 0.00 4.57
2518 2669 2.050168 CACACAACACATGGCGCC 60.050 61.111 22.73 22.73 0.00 6.53
2535 2686 0.324943 TTTCAGCTGCAGTCCTACCC 59.675 55.000 16.64 0.00 0.00 3.69
2536 2687 2.409948 ATTTCAGCTGCAGTCCTACC 57.590 50.000 16.64 0.00 0.00 3.18
2537 2688 2.159462 GCAATTTCAGCTGCAGTCCTAC 60.159 50.000 16.64 0.00 38.48 3.18
2538 2689 2.086869 GCAATTTCAGCTGCAGTCCTA 58.913 47.619 16.64 0.00 38.48 2.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.