>input_sequence_75355
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-----------------------------------------------------------------ATGACGGAGCTGCCC
GAGGGCCACCCGTCGCGGCGCGTGGTCGAGCTCATCTTCGCGTCGGGCTGGGCGCGCAC---CGACGGAGCCGCGGAGGT
GGAGGTGCTCTTCCGGGTGCACAGCACGGCGCGCGCGGTGGCGCGCTTCGAGTGCGCTCGCGCCGCCGCCCGGGCGCGCG
GCGAGGCCGCGGGCGACGCGCGGTGCGCCGCCGACGGCAACGAGATGATGCGGTTCCAGTGCCGCCCCGCCGCGGAGGCC
GGGGGCGGCAGCGAGGTGATCTGCGCGACCGTCGCTACGTGCCACCAGGCCGGCGCGGCCAGGGCCGTGCGCACGTTCGC
CGGCAGCGGCGCGGCGGACGCGGGCGCCGGGGGCGGAAGCCACGAGGGCCGCAGGGGCATGCTGGTGTGCCGCGTCATCG
CCGGCCGCGTCCGTCGCGGCTCCACCGACGAGCACCCCGGCGAGTACGACTCGGCGGACCCGGGGGACGGCGAGCTGGTG
GTGCTGGACCGGCGCGCCGTGCTCCCGTGCTTCCTCGTGGTGTACAGGGTCAAGCCTCCTCCGGAGCTGCACAGCTCCTC
CAGCTGA-------------------------------------------------------------------------
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>chr5A_1_TraesCS5A01G536800
GGTGCTTTGTTGTTCTCGTGTGTTCGTGTTGGGGGGGGAGGGGGGGCGACATGGCGATTTTTCGACTGTCTACTAGAACA
AGTATTGCGCGACTCCAATGCAAGAGGGGCGATGACGGCAACATGATCCACATGAGAATGGAGTTGATCCAAGACAACAA
ATAAAACTGATCCACCACAAAAAATAAGGGTCTATTTAACCAAAAAT-TAG-GCCAATTCATCACCTTGTGATGA----T
TTAATTTGCGGATCATGAAAGCGCATAGTACACCACACCAGACCCAAAAGGAGGATCGATCTCCAGATGCTGGCAAAAGG
CTCCACATTTCCTTTTCAGAAGAAAATAGAACTGAGAAAGGCTGCGTTACACTCCACACCATCTACACCCCTCCCTGCCG
TCCGGACCCGCCTGCGTCGGCGGCCCACGCGTCGGTGTGGTGGAGAGAGCTACTTTTAGGTGTAGGTGGCGGTCGCCGGA
GTGGTGGCGACTAAATCTGATGGACATAATAACGCCCAGAGATGCAGAGCTGAGGTGAGTTGACACCCACCGCCCGCTCC
CCGGCAACAAACTCC----AGTCGCCGCCCCCTCCTCCCTCGTGCTCTGCTTTTTATACGGCGCGCCGCCGTGCTGGGCT
TCCGTCCATCTTGCACAGTACCTCGCCGGCAATGGCCGCGGCGACGGCGTGGGTGCGCTCCCTCAGCTGCAAGTACTCTA
CCGCCGTCGCCGACGACGCGTACAGCCCGCTCCTGCCCCCGCCCAAGAAGCACCCGCCGACGCCGACGGTCAAGGGTGCT
GCCTCCGTCGCGTTGCTGCCGCCGGAGAGGGGCAGGGAGAGTCGGCGGTCTAGGTCCATGTCCAGCGAGCGGGACCGGCC
TCCTACCGCTACTGCTACTGCTAGGAAGATGAAGAAGAAGGA------GGACGCCACGTCCGAGCTCGCGAGGAAGGAGA
AGCCGAGGCT---------GCCGCTCGCGGCGTCGCTGGAGCGGCCGAGCTCGGCTCTCCTGGAGATGACGGAGCTGCCC
GAGGGCCACCCGTCGCGGCGCGTGGTCGAGCTCATCTTCGCGTCGGGCTGGGCGCGCAC---CGACGGAGCCGCGGAGGT
GGAGGTGCTCTTCCGGGTGCACAGCACGGCGCGCGCGGTGGCGCGCTTCGAGTGCGCTCGCGCCGCCGCCCGGGCGCGCG
GCGAGGCCGCGGGCGACGCGCGGTGCGCCGCCGACGGCAACGAGATGATGCGGTTCCAGTGCCGCCCCGCCGCGGAGGCC
GGGGGCGGCAGCGAGGTGATCTGCGCGACCGTCGCTACGTGCCACCAGGCCGGCGCGGCCAGGGCCGTGCGCACGTTCGC
CGGCAGCGGCGCGGCGGACGCGGGCGCCGGGGGCGGAAGCCACGAGGGCCGCAGGGGCATGCTGGTGTGCCGCGTCATCG
CCGGCCGCGTCCGTCGCGGCTCCACCGACGAGCACCCCGGCGAGTACGACTCGGCGGACCCGGGGGACGGCGAGCTGGTG
GTGCTGGACCGGCGCGCCGTGCTCCCGTGCTTCCTCGTGGTGTACAGGGTCAAGCCTCCTCCGGAGCTGCACAGCTCCTC
CAGCTGATCCGACGCCCTTGCCATGGATTCACTGTCGTGTTAATCACCATCACCG-------------CCACTCACTAAT
CCGCTAACTGCTAGCTAGGCTCGGATCGATATCGATCTTCCTTCCCCCAGTCCTCCATGACCGATAGATCGATGCAATGT
GTGCATGTGAGACTGTAAAAAA-CT-CCATTGTTTTCCACCCCCCACGATTGTTGACCGAAATTGTACCATACATCAAAG
-----------AAATGCAGCCACTACTTGAGTTCAGATCGTCTCATCATACTTTCG-------GTGC--CCCAACTGCAC
AC----CCATCCATTGTTTTTTACCACCGTACA------------------------AACAAATGCAGTTCATCTCTTAC
TTTCAGAG----CCCAATCCGCCATTGTTTTCCGTGCA---------CGCACGACACAGCACAGCACGACCGACCGCACA
CCGTTCCGTTCCGTTGCGCCGTCGCCATCGGTCCGTCAA--TCAGCGCCCATTCAGCACTGAAATCCAGCAGATTCAGCA
CAGAAATTCAGCAGATTCAGCAC-----------------------------------AGGAATTCGGTGAGAGATCCGC
TGTCGTCGTAGGTACT------GTACTACGACTATACTACAGTAATCAATCTACGAAGGTGACGCACGCCGCTTGTCACC
ACGCGCTCGTCTTCTTCCTCCGGCTGCTTTCCGCCGGATTTCGGATTTGGCAACACTCGCGGGCAGGGCCAGAGGAACGG
ACAACGGAATTCCGTTGCGGCAGGCAAGAGTCCAGGCTATCTTGTTGGGTCGTCTTGTCCGCACCCGCTTGTCACTAAGC
TTCCTCTTGGCTCTTCGGATCAATGGCTTCAGAATTTCTACTCTACTCTACTGGATGTGTTCTGGATCAAGC---GATGA
ACAGTAAAAAAAAGGCTCATATCATATGCACGCAATAGCGATGTCATCAATGTTGGAAGGGCCTGCGGTTGGCTCACTGG
CAGCACGCACACATGGGGATGGGACGGGGGCGCCATGTGTTGTGTGGGTAGGACTGCAGCTGAAATTGCATATGCATATG
GTCCTGCAT
>chr4D_141
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------------------------------------------------------------GAGTTGATCCAACGCAACAA
ATAGAATTGATCCACTACAAAA---AAAGGTCTATTTAAGCAAAAAAATAT-GCAAATTCATCACCTTGTGATTAGGCCT
TTAATTTGCGGATCATGAAAGCATACA------CACACCAGACCCAAAAGGAGGATCGATCTCCAGATGCTAAG------
---------------------GAAAA---AACTGAGAAAGGCTGCGCTACTTTCCACACCATCTACGCCCCTCCCTGCCG
TCCGGACCCGCCTGCGTCGGCGGCCCACGTGTCGGTGGGGCGGGAGAACCATTCTCT-GGTGTAGCCGGTGGTCGCCGGA
GTGGTGGCGAATAAATCTGATGGCCATAATAACGCCCAGAGATGCAGAGCTGAGGTGAGTTGACACCCACCGCCCGCTCC
CCGCCAACAACCTCCAGCCAGTCGCCGCCCCCCG--CCCTCGTGCTCTGCTTTTTATACGGCGCGCCGCCGTGCTGGGGT
C----CCGTCTTGCACAGTACCTCGCCGGCAATGGCCGCGGCGACGGCGTGGGTGCGCTCGCTCAGCTGCAAGTACTCTA
CGGCCGTCGCCGACGACGCGTACAGCCCGCTGCTGCCCCCGCCCAAGAAGCACCCGCCGACGCCGACGGCCAAGGGTGCT
GCCTCCGTCGCGTTGCTGCCGCCGGAGAGGGGCCGGGAGAGCCGGAGGTCCAGGTCCATGTCCAGCGAGCGGGACCGGCC
T------GCTGCTGCTACTGCTAGGAAGACGAGGAAGAAGGAGG---CGGACGCCACGTCCGAGCACGCGAGGAAGGAGA
CGCCCAGGGTGCA------GCGGCTCGCGGCGTCGCTGGAGCGGCCGGGCTCGGCGCTCCTGGAGATGACGGAGCTGCCG
GAGGGCCACCCGTCGCGGCGCGTGGTGGAGCTCATCTTCGCGTCGGGCTGGGCGCGCGC---CGACGGAGCCGCGGAGGT
GGAGACGCTGTTCCGGGTGCACGGCACGGCGCGCGCGGCGGCGCGCTTCGAGGCCGCGCGCGCCGCCGCCCGGGCGCGGG
GCGAGGCCGCGGGCGACGGGCGCTGCGCCGCCGACGGCAACGAGGTGATGCGGTTCCAGTGCCGCCCCGCGGCGGAGGCC
GGGGGCGGCAGCGAGGTGATCTGCGCGGCCGTGGCCACGTGCCACAAAGCCGGCGCGGCCAGGGCCGTGCGCACGTTCGC
CGGCAGCGGCGCGGCGGACGCCGGCATAACA---GGAGGCCGCGAGGGCCGCAGGGGCATGCTGGTGTGCCGCGTCATCG
CCGGCCGCGTCCGTCGCGCCTCCGCCGACGAGCGCCCCGGCGAGTACGACTCTGTTGACGCGGGGGACGGCGAGCTGGTG
GTGCTGGACCGGCGCGCCGTGCTCCCCTGCTTCCTCGTGGTGTACAGGGTCAAGCCTCCCCCGGAGCTCTCCACCTCCTC
CAGCGGCCGCTCCCGCTGACCCGACCGACGCCGGCCATGAACGGATCCCGGCGCCGATCAGCACCGCTCCACCCGCTAAT
CCGCTAACTGCTAGCTAGGCTTGGATCG--ATCGACCTTCCTCCCCCCATTCCTCCATGACC----GATCGATGCAAGGT
GTGCATGTGAGACTGTAAAAAA-CGGCCATTGTTTCCCA-CCCCCACGATTGTTGACCGAAATTGTACCATACATCAATC
AAACAAATGCA----GCTGCTGCTACTTGAGCTCAGTGCAGCTCGTCTCTTACTTTCAGTGCCGTGC--CCCAACTGCAC
AC----CCATCCATTGTTTTTACCACTATTGACCGAAATC--------AAACCGTACAACAGATGCAGCTCAACCAATCC
GT-------------------CCATTGTTTCCCGTGCACGTACGCACCGCACGGCACAGCACAGCACGAACGACCGCAAG
CCGTTCCGTTCCGTTCGGGCGTCGCCATCAGTCAGTCAAAATCAGCGCCC----------------------ATTCAGCA
CAGAAATTCAGCAGATTCAGCAC-----------------------------------AGAAATTT------------GC
TGTCGTCGTAGGTACT------GTAGTACGGCTAC-----------CAATCAACGAAGGTGACGCACGCCGCTTGTCACC
GCGCGCTCGTCTTCTTCCTCGGCGC-CTTTCCGCCGGATTTCGGATTTGGCAACACTCGCGGCCGGCGCCAGAGGAACCG
ACAACCCAATTCCGTTGCGGCAGGCAAGAGTCCAGACTATCTTGTCACATCGGCTTGTCCGCGTCTGCTTGGCACCGCGC
TTCCTCTTG-------GGATCAATGGCAGCGGCTTGGAGCTGGAATTCAAGGGATGATGTTCTGAATCAAGGGATGATGA
ACAGTAAAAAATATATGTACGCACT------------GCGATGTCATCAATGTTGGGAGGACCTGTGGTTGGTTCACTGA
CAGCACACACACAT-GGGATGGGGCGGGAGCGCCATGTGTTGTGT----AGGACTGCGGCTGCGATTGCA----------
---------
>chr4B_184
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-----------------------ATAAGAGTCTATTTAAGCAAAAAAAAAAGGCAAATTCTTCACCTTGTGATGA----T
TTAATTTGCGGATCATGAAAGCATATATGA-------------CCCAAAGGAGGATCGATCTCCACATGCTGGCAAAAGG
CTCCACG-TTTCTTTTCAGAAGAAAA---AACTGAGAACTATTCGG-----------ACCCCCTACGTGGCTTCCTGCCG
TCGGGACCCACCTGCGTCGGCGGCCCACGTGTCGGTGGCACGGGAGAACCATTTTCT-GGTGTAGCCGGTGGTCGCCGGA
GTGGGGGCGAATAAATCTGATGGCCATAATAACGCCCAGAGATGCAGAGCTGAGGTGAGTTGACACCCACCGCCCGCTCC
CCGGCAACAAACTCC----------------------CCTCGTGCCCTGCTTTTTATACGGCGCGCCGCCGTGCTGGGGC
----TCCGTCTTGCACAGTACGTCGCCGGCAATGGCGGCGGCGACGGCGTGGGTGCGCTCGCTCAGCTGCAAGTACTCCA
CCGCCGTCGCCGACGACGCGTACAGCCCGCTGCTGCCCCCGCCCAAGAAGCACCCGCCGGCGCCGACGGTCAAGGGTGCT
GCCTCCGTCGCGTTGCGGCCGCCGGAGAGGGGCCGGGAGAGCCGGAGGTCCAGGTCCATGTCCTGCGAGCGGGACCGGCC
T------GCTGCTGCTACTGCTAGGAAGACCAAGAAGAAGAAGGAGGCGGACGCCACGTCCGAGCTCGCGAGGAAGGAGA
AGCCCAGGCAGCGGCAGGCGCAGCTCGCGGCGTCGCTGGAGCGGCCTAGCTCGGCGCTCCTGGAGATGACGGAGCTGCCG
GAGGGCCACCCGTCGCGGCGCGTGGTGGAGCTCATCTTCGCGTCGGGGTGGGCGCGCGCGGCCGACGGAGCCGCGGAGGT
GGATGCGCTGTTCCGGGTGCACGGCACGGCGCGCGCGGCGGCGCGCTTCGAAGCCGCGCGCGCCGCGGCCCGGGCGCGGG
GCGAGGCCGCGGGCGAGGCGCGCTGCGCCGCCGACGGCAACGAGGTGATGCGGTTCCAGTGCCGCCCCGCCGCGGAGGCC
GGGGGCGGCAGCGAGGTGATCTGCGCCGCCGTGGCCACGTGCCACAAAGCCGGCGCGGCCAGGGCCGTGCGCACGTTCTC
CGGCAGCGGCGCGGCGGACGCGGGCGCCGGGGGAGAAGGCCGCGAGGGCCGCAGGGGCATGCTGGTGTGCCGCGTCATCG
CCGGCCGCGTCCGTCGCGCCTCCGCCGACGAGCACCCCGGCGAGTACGACTCGGTGGAGGCGGAGGATGGCGAGCTGGTG
GTGCTGGACCGGCGCGCCGTGCTCCCCTGCTTCCTCGTGGTGTACACGGTCAAGCCTCCCCCGGAGCTCTCCACCTCCTC
CAGCGGCCGCTCCCGCTGACCCGACCGACGCCGGCCATGCACGGATCCCTGCGCCGATCACCACCACTCCACTCGCTAAT
CCGCTAACTGTTAGCTAGATAGGCTTGG--ATCGATGTTCCTTCCCCCATT---------------GATCGACGCAAGGT
GTGCATGCGAGACTGTAAAAAAACT-CGATTGTTTTTCA-CCCCCACGATTGTTGACCGAAATTGTACCATACTAGTACT
ACGTACATCAAAAATGCAGCTACTTGTTGAGTTCACTAC--CTCGTCTCTTACTCTGAGAGTTTCAGTGCCCAACTGCAC
GTCCGTCCATCCATTGTTTTTACCACTGCTGCTACGATTGTTGACCGAAACCCGTACAACAAATGCAGTTCATCTCTTGC
TTTCAATCAGACCCCAATCCGCCATTGCTTTCCGCGCA---------CGCACGACACAGCACGAGTGC-ACGACCGCAAG
CCGTTCCGTTCCGTTCTGGCGTCGCCATCAGTCAGTCAA--TCAGCGCCC----------------------ACTCAGCA
CAGCAATTCAGTAGATTCAGCACAGAAATCCAGCAGATTCAGCACAGGAATTCGGTTGAGAGATTT------------GC
TGTCGTCGTAGGTAGTGTAGTAGTAGTACGACTAC-----------CAATCTACGGAGCTGACGCACGCCGCTTGTCACC
GCGCGCTCGTCTTCTTCCTCGGCGA-----------GATTTCGGATTTGGCAACGCCCGCGGCCGGTGCCAGAGGAACCG
ACAACCGAATTCCGTTGCGGCAG---------------------------------------------------------
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>chr1B_730
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-------------------GTACAGCCCGCTCCTGCCCCCGCCCAAGAAGCACCCGCTGACGCCGACAGTCAAGACTGGT
TCTC---TCGCGTTGCTGCTGCTGGAGAGGGACCGGGAGAGCCGAAGGTCCAGGTCCATGTCAAGCCAGCGGGACCGGCC
T------ACTACTGCTACTGCTAGGAAGACGAAGAAGAAGGAGGAGG---ACACCGCGTCTGAGCTCGCGAGGAAGGACA
TGCCCAGGCTGCA------GCGGCTCGCGGCGTCGCTGGAGTGGCCGAGCTCCGCGTTCTTGGAGATGACGGAGTTGCCC
GAGGGCCACCCGTCGCGGCGCGTGGTCGCA------------TCGGGCTGGGCGCGCGC---CGACGGAGCCACGGAGGT
GGATGCTTTCTTCCGGGTGCACAACACGGCACGCGCGATGGCGCGCTTCGAGGCCGCGCGCGCCGCGGCGCGGGCGCGTG
G---------------------------------------CGAGGTGATGCGGTTCCAGTGCTGCCCCGCTGCGGAGGCC
GGGGGCGGCAGCGAGGTGATCTGCGCGGCCGTCGCCATGTGCCACCAAGCCGGCGCCGC---------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------SS------
---S--S--------S------S----------------S------S---S---S-------------------------
----------------------SS---SS-SSS-----------------------------------------------
------SS--S---------------SSS-----------------S---SS--------------S-------------
-----------------------------S-------S--S--SSSS-S-SSS--S-S-------SS--S----------
----------S------------S--------------------------------------------------------
--------------------------------SSSS------------------------------------------S-
SSSS---S----------------------------------------------------S-------------------
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---------------------------------S-------S---S----S-----------------------------
-SSSSSS----------------------S--------------------------------------------------
----S----------------S---------------------------------S------------------------
---------------------------------------------------------S----------------------
-----S----------------------------------------------SS---S--------------------S-
----------------------S---------------------S-----------------------------------
---------------------------S-------S-----------S--------------------------------
---------------------------------S---S---S--------------------------------------
------------------S----S------------------------------S----S--------------------
--------------------------S--------------------------------S--------SSS--S------
----S-SSS-SS-SS-SSSS--SSSSSSSSS-S-S-S--SSSSSSS--S-SSS-S-------------------S-----
---------------------S------SS-------------------S------------SSSS-----------S--
---------------------------------------S--------------------------------------SS
--------------------S---------------SS-SS---S--SSSSSS--S------------------------
---------------------SS-SSSSS-S-S---------------------------------------------S-
-----SSS-------------------------------------------------------------S--------SS
---------------SS-S----------S---S----------------SSSSSSSSSSSSSSSSSSSSSS--------
------------------------------------------------------------S----SSSSSSSSSSSSS--
-------------------------S--------SSSSSSSSSSSS----------------------------------
S-------------------S-SSSS------------------------------------S-S-S-----------S-
-----S-----------------------------S---------SSSS---S---------SS-S-----S---SSS--
---------SSSSSSS-----------SS-S-SS-SSSSSSSSS-S--S-SS-SSSS-------S------S--------
-----------S-SSSSS-SSSSS-SSSSSSSSSSSS-------------------S---S----S------S------S
------S-------S--------S----S----------------SSSS--------S----SS------SSSSSSSSSS
SSSSSSSSS
>forward_132
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--------------------------------TGACGGCAACATGATCCACA----------------------------
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>reverse_1547
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--------------------------GTGCTTCCTCGTGGTGTACA----------------------------------
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>forward_264
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----TTTGCGGATCATGAAAGCGC--------------------------------------------------------
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>reverse_2008
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-------GCCCAATCCGCCATTGTTTT-----------------------------------------------------
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