Multiple sequence alignment - TraesCS5A01G535600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G535600 chr5A 100.000 1760 0 0 673 2432 692180110 692178351 0.000000e+00 3251.0
1 TraesCS5A01G535600 chr5A 100.000 441 0 0 1 441 692180782 692180342 0.000000e+00 815.0
2 TraesCS5A01G535600 chr5A 95.327 107 5 0 334 440 491705233 491705127 1.160000e-38 171.0
3 TraesCS5A01G535600 chr5A 93.578 109 7 0 332 440 491936305 491936413 1.930000e-36 163.0
4 TraesCS5A01G535600 chr4B 88.994 1272 83 22 701 1962 654720391 654719167 0.000000e+00 1520.0
5 TraesCS5A01G535600 chr4B 88.217 1273 90 25 701 1962 654593304 654592081 0.000000e+00 1465.0
6 TraesCS5A01G535600 chr4B 87.992 1016 69 27 761 1774 654794104 654793140 0.000000e+00 1151.0
7 TraesCS5A01G535600 chr4B 89.320 618 41 11 761 1375 654676599 654676004 0.000000e+00 752.0
8 TraesCS5A01G535600 chr4B 82.000 700 84 22 752 1443 654752250 654751585 7.600000e-155 556.0
9 TraesCS5A01G535600 chr4B 81.714 700 86 22 752 1443 654762489 654761824 1.640000e-151 545.0
10 TraesCS5A01G535600 chr4B 81.571 700 87 22 752 1443 654774695 654774030 7.650000e-150 540.0
11 TraesCS5A01G535600 chr4B 80.857 700 91 22 752 1443 654699754 654699090 6.000000e-141 510.0
12 TraesCS5A01G535600 chr4B 88.056 427 25 11 1772 2197 654781467 654781066 1.310000e-132 483.0
13 TraesCS5A01G535600 chr4B 87.354 427 28 11 1772 2197 654649741 654649340 1.320000e-127 466.0
14 TraesCS5A01G535600 chr4B 83.832 334 39 10 1 333 654720715 654720396 1.090000e-78 303.0
15 TraesCS5A01G535600 chr4B 90.625 224 15 3 2210 2432 654591804 654591586 2.370000e-75 292.0
16 TraesCS5A01G535600 chr4B 88.889 243 20 4 2191 2432 654780983 654780747 2.370000e-75 292.0
17 TraesCS5A01G535600 chr4B 90.179 224 16 3 2210 2432 654718890 654718672 1.100000e-73 287.0
18 TraesCS5A01G535600 chr4B 81.944 360 29 16 777 1134 654561596 654561271 3.080000e-69 272.0
19 TraesCS5A01G535600 chr4B 86.777 242 27 2 2191 2432 654649257 654649021 5.160000e-67 265.0
20 TraesCS5A01G535600 chr4B 91.111 180 13 2 2019 2197 654719169 654718992 8.690000e-60 241.0
21 TraesCS5A01G535600 chr4B 91.061 179 13 2 2019 2196 654592083 654591907 3.130000e-59 239.0
22 TraesCS5A01G535600 chr4B 91.379 58 4 1 6 63 654794366 654794310 7.210000e-11 78.7
23 TraesCS5A01G535600 chr4B 89.655 58 5 1 6 63 654676861 654676805 3.350000e-09 73.1
24 TraesCS5A01G535600 chrUn 90.064 1097 72 20 689 1779 154586582 154587647 0.000000e+00 1387.0
25 TraesCS5A01G535600 chrUn 88.650 652 66 4 986 1637 154617347 154617990 0.000000e+00 787.0
26 TraesCS5A01G535600 chrUn 94.295 298 10 5 40 337 154586301 154586591 1.330000e-122 449.0
27 TraesCS5A01G535600 chrUn 88.362 232 21 5 2201 2432 154588670 154588895 8.570000e-70 274.0
28 TraesCS5A01G535600 chrUn 81.682 333 24 12 1627 1928 154618010 154618336 2.420000e-60 243.0
29 TraesCS5A01G535600 chrUn 83.962 212 20 9 2222 2432 154619490 154619688 8.880000e-45 191.0
30 TraesCS5A01G535600 chrUn 90.511 137 12 1 1938 2073 154588223 154588359 1.920000e-41 180.0
31 TraesCS5A01G535600 chrUn 98.182 55 1 0 3 57 154586236 154586290 1.990000e-16 97.1
32 TraesCS5A01G535600 chrUn 87.097 62 8 0 756 817 154545767 154545828 1.210000e-08 71.3
33 TraesCS5A01G535600 chrUn 86.154 65 9 0 756 820 189558615 189558551 1.210000e-08 71.3
34 TraesCS5A01G535600 chr3D 96.262 107 4 0 335 441 580410777 580410671 2.490000e-40 176.0
35 TraesCS5A01G535600 chr2A 93.519 108 7 0 332 439 461511415 461511308 6.960000e-36 161.0
36 TraesCS5A01G535600 chr1D 94.286 105 6 0 335 439 492428958 492429062 6.960000e-36 161.0
37 TraesCS5A01G535600 chr5B 94.231 104 6 0 336 439 609609676 609609573 2.500000e-35 159.0
38 TraesCS5A01G535600 chr4D 94.231 104 6 0 336 439 51610827 51610930 2.500000e-35 159.0
39 TraesCS5A01G535600 chr4A 93.458 107 7 0 333 439 714185679 714185573 2.500000e-35 159.0
40 TraesCS5A01G535600 chr5D 93.396 106 7 0 334 439 73768900 73769005 9.000000e-35 158.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G535600 chr5A 692178351 692180782 2431 True 2033.000000 3251 100.000000 1 2432 2 chr5A.!!$R2 2431
1 TraesCS5A01G535600 chr4B 654591586 654593304 1718 True 665.333333 1465 89.967667 701 2432 3 chr4B.!!$R6 1731
2 TraesCS5A01G535600 chr4B 654793140 654794366 1226 True 614.850000 1151 89.685500 6 1774 2 chr4B.!!$R11 1768
3 TraesCS5A01G535600 chr4B 654718672 654720715 2043 True 587.750000 1520 88.529000 1 2432 4 chr4B.!!$R9 2431
4 TraesCS5A01G535600 chr4B 654751585 654752250 665 True 556.000000 556 82.000000 752 1443 1 chr4B.!!$R3 691
5 TraesCS5A01G535600 chr4B 654761824 654762489 665 True 545.000000 545 81.714000 752 1443 1 chr4B.!!$R4 691
6 TraesCS5A01G535600 chr4B 654774030 654774695 665 True 540.000000 540 81.571000 752 1443 1 chr4B.!!$R5 691
7 TraesCS5A01G535600 chr4B 654699090 654699754 664 True 510.000000 510 80.857000 752 1443 1 chr4B.!!$R2 691
8 TraesCS5A01G535600 chr4B 654676004 654676861 857 True 412.550000 752 89.487500 6 1375 2 chr4B.!!$R8 1369
9 TraesCS5A01G535600 chr4B 654780747 654781467 720 True 387.500000 483 88.472500 1772 2432 2 chr4B.!!$R10 660
10 TraesCS5A01G535600 chr4B 654649021 654649741 720 True 365.500000 466 87.065500 1772 2432 2 chr4B.!!$R7 660
11 TraesCS5A01G535600 chrUn 154586236 154588895 2659 False 477.420000 1387 92.282800 3 2432 5 chrUn.!!$F2 2429
12 TraesCS5A01G535600 chrUn 154617347 154619688 2341 False 407.000000 787 84.764667 986 2432 3 chrUn.!!$F3 1446

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
362 396 0.109132 GAGCTTGGGCCGAATTTGTG 60.109 55.0 0.0 0.0 39.73 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1713 1852 0.457851 CCTGAACACCCGCACAAAAA 59.542 50.0 0.0 0.0 0.0 1.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 95 9.418045 CCAACAAATAAGGGTACACTAATTTTG 57.582 33.333 18.54 18.54 0.00 2.44
75 107 9.444600 GGTACACTAATTTTGGATCTGAGTTTA 57.555 33.333 0.00 0.00 0.00 2.01
98 130 5.472148 ACTGCACAATGAAACATTATGGTG 58.528 37.500 5.20 6.87 32.54 4.17
99 131 5.010922 ACTGCACAATGAAACATTATGGTGT 59.989 36.000 5.20 0.00 32.10 4.16
150 184 1.670811 ACCACGCTGAAACAAGACAAG 59.329 47.619 0.00 0.00 0.00 3.16
172 206 6.036577 AGTTGTCAAAACCAGAAAACACAT 57.963 33.333 0.00 0.00 36.01 3.21
173 207 7.164230 AGTTGTCAAAACCAGAAAACACATA 57.836 32.000 0.00 0.00 36.01 2.29
179 213 4.561735 AACCAGAAAACACATAACACGG 57.438 40.909 0.00 0.00 0.00 4.94
183 217 5.048991 ACCAGAAAACACATAACACGGATTC 60.049 40.000 0.00 0.00 0.00 2.52
207 241 1.007479 AGCAATGGTGGATGGTGGATT 59.993 47.619 0.00 0.00 0.00 3.01
337 371 7.503991 TCGAAATTAGTTAACGTGTTAAGCAG 58.496 34.615 5.48 0.00 35.90 4.24
338 372 7.169645 TCGAAATTAGTTAACGTGTTAAGCAGT 59.830 33.333 5.48 0.00 35.90 4.40
339 373 7.265495 CGAAATTAGTTAACGTGTTAAGCAGTG 59.735 37.037 5.48 0.00 35.90 3.66
340 374 5.910637 TTAGTTAACGTGTTAAGCAGTGG 57.089 39.130 5.48 0.00 35.90 4.00
341 375 2.546789 AGTTAACGTGTTAAGCAGTGGC 59.453 45.455 5.48 0.00 35.90 5.01
359 393 4.018409 GGAGCTTGGGCCGAATTT 57.982 55.556 0.00 0.00 39.73 1.82
360 394 1.512694 GGAGCTTGGGCCGAATTTG 59.487 57.895 0.00 0.00 39.73 2.32
361 395 1.250840 GGAGCTTGGGCCGAATTTGT 61.251 55.000 0.00 0.00 39.73 2.83
362 396 0.109132 GAGCTTGGGCCGAATTTGTG 60.109 55.000 0.00 0.00 39.73 3.33
363 397 1.079888 GCTTGGGCCGAATTTGTGG 60.080 57.895 0.00 0.00 0.00 4.17
364 398 1.531739 GCTTGGGCCGAATTTGTGGA 61.532 55.000 0.00 0.00 0.00 4.02
365 399 0.527565 CTTGGGCCGAATTTGTGGAG 59.472 55.000 0.00 0.00 0.00 3.86
366 400 0.897863 TTGGGCCGAATTTGTGGAGG 60.898 55.000 0.00 0.00 0.00 4.30
367 401 2.052104 GGGCCGAATTTGTGGAGGG 61.052 63.158 0.00 0.00 0.00 4.30
368 402 2.052104 GGCCGAATTTGTGGAGGGG 61.052 63.158 0.00 0.00 0.00 4.79
369 403 2.710902 GCCGAATTTGTGGAGGGGC 61.711 63.158 0.00 0.00 0.00 5.80
370 404 1.304052 CCGAATTTGTGGAGGGGCA 60.304 57.895 0.00 0.00 0.00 5.36
371 405 0.897863 CCGAATTTGTGGAGGGGCAA 60.898 55.000 0.00 0.00 0.00 4.52
372 406 0.965439 CGAATTTGTGGAGGGGCAAA 59.035 50.000 0.00 0.00 38.68 3.68
373 407 1.550072 CGAATTTGTGGAGGGGCAAAT 59.450 47.619 0.00 0.00 44.29 2.32
374 408 2.674747 CGAATTTGTGGAGGGGCAAATG 60.675 50.000 3.70 0.00 42.39 2.32
375 409 1.278537 ATTTGTGGAGGGGCAAATGG 58.721 50.000 0.00 0.00 41.86 3.16
376 410 0.835543 TTTGTGGAGGGGCAAATGGG 60.836 55.000 0.00 0.00 30.68 4.00
377 411 3.076916 GTGGAGGGGCAAATGGGC 61.077 66.667 0.00 0.00 42.44 5.36
378 412 3.275271 TGGAGGGGCAAATGGGCT 61.275 61.111 0.00 0.00 42.84 5.19
379 413 2.761213 GGAGGGGCAAATGGGCTG 60.761 66.667 0.00 0.00 42.84 4.85
380 414 2.761213 GAGGGGCAAATGGGCTGG 60.761 66.667 0.00 0.00 42.84 4.85
381 415 3.275271 AGGGGCAAATGGGCTGGA 61.275 61.111 0.00 0.00 42.84 3.86
382 416 2.761213 GGGGCAAATGGGCTGGAG 60.761 66.667 0.00 0.00 42.84 3.86
383 417 2.761213 GGGCAAATGGGCTGGAGG 60.761 66.667 0.00 0.00 42.84 4.30
384 418 2.761213 GGCAAATGGGCTGGAGGG 60.761 66.667 0.00 0.00 39.42 4.30
385 419 2.761213 GCAAATGGGCTGGAGGGG 60.761 66.667 0.00 0.00 0.00 4.79
386 420 2.761213 CAAATGGGCTGGAGGGGC 60.761 66.667 0.00 0.00 0.00 5.80
387 421 3.275271 AAATGGGCTGGAGGGGCA 61.275 61.111 0.00 0.00 0.00 5.36
388 422 2.867508 AAATGGGCTGGAGGGGCAA 61.868 57.895 0.00 0.00 0.00 4.52
389 423 2.810488 AAATGGGCTGGAGGGGCAAG 62.810 60.000 0.00 0.00 0.00 4.01
391 425 3.661648 GGGCTGGAGGGGCAAGAA 61.662 66.667 0.00 0.00 0.00 2.52
392 426 2.440599 GGCTGGAGGGGCAAGAAA 59.559 61.111 0.00 0.00 0.00 2.52
393 427 1.979155 GGCTGGAGGGGCAAGAAAC 60.979 63.158 0.00 0.00 0.00 2.78
394 428 1.228552 GCTGGAGGGGCAAGAAACA 60.229 57.895 0.00 0.00 0.00 2.83
395 429 0.613012 GCTGGAGGGGCAAGAAACAT 60.613 55.000 0.00 0.00 0.00 2.71
396 430 1.180029 CTGGAGGGGCAAGAAACATG 58.820 55.000 0.00 0.00 0.00 3.21
397 431 0.899717 TGGAGGGGCAAGAAACATGC 60.900 55.000 0.00 0.00 43.08 4.06
398 432 0.613012 GGAGGGGCAAGAAACATGCT 60.613 55.000 0.00 0.00 43.34 3.79
399 433 1.260544 GAGGGGCAAGAAACATGCTT 58.739 50.000 0.00 0.00 43.34 3.91
400 434 1.620323 GAGGGGCAAGAAACATGCTTT 59.380 47.619 0.00 0.00 43.34 3.51
401 435 2.037641 GAGGGGCAAGAAACATGCTTTT 59.962 45.455 0.00 0.00 43.34 2.27
402 436 3.238597 AGGGGCAAGAAACATGCTTTTA 58.761 40.909 0.00 0.00 43.34 1.52
403 437 3.259123 AGGGGCAAGAAACATGCTTTTAG 59.741 43.478 0.00 0.00 43.34 1.85
404 438 3.006859 GGGGCAAGAAACATGCTTTTAGT 59.993 43.478 0.00 0.00 43.34 2.24
405 439 4.503123 GGGGCAAGAAACATGCTTTTAGTT 60.503 41.667 0.00 0.00 43.34 2.24
406 440 5.056480 GGGCAAGAAACATGCTTTTAGTTT 58.944 37.500 0.00 0.00 43.34 2.66
407 441 5.050159 GGGCAAGAAACATGCTTTTAGTTTG 60.050 40.000 0.00 0.00 43.34 2.93
408 442 5.752955 GGCAAGAAACATGCTTTTAGTTTGA 59.247 36.000 0.00 0.00 43.34 2.69
409 443 6.424812 GGCAAGAAACATGCTTTTAGTTTGAT 59.575 34.615 0.00 0.00 43.34 2.57
410 444 7.041848 GGCAAGAAACATGCTTTTAGTTTGATT 60.042 33.333 0.00 0.00 43.34 2.57
411 445 8.337532 GCAAGAAACATGCTTTTAGTTTGATTT 58.662 29.630 0.00 0.00 40.64 2.17
418 452 9.260002 ACATGCTTTTAGTTTGATTTTAACTGG 57.740 29.630 0.00 0.00 36.56 4.00
419 453 8.711457 CATGCTTTTAGTTTGATTTTAACTGGG 58.289 33.333 0.00 0.00 36.56 4.45
420 454 6.704050 TGCTTTTAGTTTGATTTTAACTGGGC 59.296 34.615 0.00 0.00 36.56 5.36
421 455 6.704050 GCTTTTAGTTTGATTTTAACTGGGCA 59.296 34.615 0.00 0.00 36.56 5.36
422 456 7.387673 GCTTTTAGTTTGATTTTAACTGGGCAT 59.612 33.333 0.00 0.00 36.56 4.40
423 457 9.921637 CTTTTAGTTTGATTTTAACTGGGCATA 57.078 29.630 0.00 0.00 36.56 3.14
425 459 9.868277 TTTAGTTTGATTTTAACTGGGCATATG 57.132 29.630 0.00 0.00 36.56 1.78
426 460 6.877236 AGTTTGATTTTAACTGGGCATATGG 58.123 36.000 4.56 0.00 34.68 2.74
427 461 5.867903 TTGATTTTAACTGGGCATATGGG 57.132 39.130 4.56 0.00 0.00 4.00
428 462 3.640967 TGATTTTAACTGGGCATATGGGC 59.359 43.478 4.56 0.00 42.44 5.36
429 463 3.396685 TTTTAACTGGGCATATGGGCT 57.603 42.857 4.56 0.00 42.84 5.19
430 464 2.363306 TTAACTGGGCATATGGGCTG 57.637 50.000 4.56 0.00 42.84 4.85
431 465 1.517238 TAACTGGGCATATGGGCTGA 58.483 50.000 4.56 0.00 42.84 4.26
432 466 0.630673 AACTGGGCATATGGGCTGAA 59.369 50.000 4.56 0.00 42.84 3.02
433 467 0.855598 ACTGGGCATATGGGCTGAAT 59.144 50.000 4.56 0.00 42.84 2.57
434 468 2.065007 ACTGGGCATATGGGCTGAATA 58.935 47.619 4.56 0.00 42.84 1.75
435 469 2.224867 ACTGGGCATATGGGCTGAATAC 60.225 50.000 4.56 0.00 42.84 1.89
436 470 2.040813 CTGGGCATATGGGCTGAATACT 59.959 50.000 4.56 0.00 42.84 2.12
437 471 3.255831 TGGGCATATGGGCTGAATACTA 58.744 45.455 4.56 0.00 42.84 1.82
438 472 3.264193 TGGGCATATGGGCTGAATACTAG 59.736 47.826 4.56 0.00 42.84 2.57
439 473 3.519510 GGGCATATGGGCTGAATACTAGA 59.480 47.826 4.56 0.00 42.84 2.43
440 474 4.019321 GGGCATATGGGCTGAATACTAGAA 60.019 45.833 4.56 0.00 42.84 2.10
689 723 2.281761 CAAAGCTCCGCCACTGGT 60.282 61.111 0.00 0.00 0.00 4.00
690 724 2.281761 AAAGCTCCGCCACTGGTG 60.282 61.111 1.13 1.13 0.00 4.17
691 725 3.120086 AAAGCTCCGCCACTGGTGT 62.120 57.895 7.86 0.00 0.00 4.16
692 726 2.624674 AAAGCTCCGCCACTGGTGTT 62.625 55.000 7.86 0.00 0.00 3.32
693 727 1.764571 AAGCTCCGCCACTGGTGTTA 61.765 55.000 7.86 0.00 0.00 2.41
694 728 1.302192 GCTCCGCCACTGGTGTTAA 60.302 57.895 7.86 0.00 0.00 2.01
695 729 1.298859 GCTCCGCCACTGGTGTTAAG 61.299 60.000 7.86 3.74 0.00 1.85
696 730 1.298859 CTCCGCCACTGGTGTTAAGC 61.299 60.000 7.86 0.00 0.00 3.09
697 731 1.599518 CCGCCACTGGTGTTAAGCA 60.600 57.895 7.86 0.00 0.00 3.91
822 866 6.600246 AACTCGATTGATCATGACATGAAG 57.400 37.500 21.52 14.33 43.50 3.02
823 867 5.910614 ACTCGATTGATCATGACATGAAGA 58.089 37.500 21.52 10.94 43.50 2.87
824 868 5.752472 ACTCGATTGATCATGACATGAAGAC 59.248 40.000 21.52 15.43 43.50 3.01
825 869 4.741676 TCGATTGATCATGACATGAAGACG 59.258 41.667 21.52 19.58 43.50 4.18
826 870 4.741676 CGATTGATCATGACATGAAGACGA 59.258 41.667 21.52 15.05 43.50 4.20
827 871 5.404667 CGATTGATCATGACATGAAGACGAT 59.595 40.000 21.52 18.32 43.50 3.73
828 872 5.978934 TTGATCATGACATGAAGACGATG 57.021 39.130 21.52 0.00 43.50 3.84
829 873 3.805971 TGATCATGACATGAAGACGATGC 59.194 43.478 21.52 5.42 43.50 3.91
830 874 3.249986 TCATGACATGAAGACGATGCA 57.750 42.857 15.83 0.00 36.11 3.96
831 875 2.931969 TCATGACATGAAGACGATGCAC 59.068 45.455 15.83 0.00 36.11 4.57
832 876 2.749280 TGACATGAAGACGATGCACT 57.251 45.000 0.00 0.00 0.00 4.40
957 1013 1.023513 GCTCAGCCACAAGCCAGTAG 61.024 60.000 0.00 0.00 45.47 2.57
958 1014 1.003355 TCAGCCACAAGCCAGTAGC 60.003 57.895 0.00 0.00 45.47 3.58
959 1015 2.042831 CAGCCACAAGCCAGTAGCC 61.043 63.158 0.00 0.00 45.47 3.93
960 1016 2.751837 GCCACAAGCCAGTAGCCC 60.752 66.667 0.00 0.00 45.47 5.19
961 1017 2.756400 CCACAAGCCAGTAGCCCA 59.244 61.111 0.00 0.00 45.47 5.36
962 1018 1.377725 CCACAAGCCAGTAGCCCAG 60.378 63.158 0.00 0.00 45.47 4.45
963 1019 1.376466 CACAAGCCAGTAGCCCAGT 59.624 57.895 0.00 0.00 45.47 4.00
964 1020 0.613260 CACAAGCCAGTAGCCCAGTA 59.387 55.000 0.00 0.00 45.47 2.74
966 1022 0.460284 CAAGCCAGTAGCCCAGTACG 60.460 60.000 0.00 0.00 45.47 3.67
1038 1094 0.471617 CCCTCTTCCTCGCCATGAAT 59.528 55.000 0.00 0.00 0.00 2.57
1056 1112 2.805313 ATCTGGTCCTCCTCGTGGCA 62.805 60.000 0.00 0.00 34.23 4.92
1116 1175 2.355115 GTCCCAAGCCCACCGATT 59.645 61.111 0.00 0.00 0.00 3.34
1122 1181 3.860930 AAGCCCACCGATTGCCGTT 62.861 57.895 0.00 0.00 36.31 4.44
1125 1184 2.359354 CCACCGATTGCCGTTCCA 60.359 61.111 0.00 0.00 36.31 3.53
1191 1254 0.671781 GCACCTGCTCAATCGACACT 60.672 55.000 0.00 0.00 38.21 3.55
1206 1269 2.546795 CGACACTCTGAAGCTGAAGGTT 60.547 50.000 0.00 0.00 38.61 3.50
1320 1383 2.029666 GCCGTGTGTCTCTGCACT 59.970 61.111 0.00 0.00 39.89 4.40
1356 1419 0.543277 TCCTCGGCATCAAGCTCAAT 59.457 50.000 0.00 0.00 44.79 2.57
1458 1523 4.970711 TCCATCACAAACCATGCATTTTT 58.029 34.783 0.00 0.00 0.00 1.94
1495 1563 0.312765 CGTCGTCGTCGTACTCGTAC 60.313 60.000 3.67 0.00 38.33 3.67
1540 1610 5.563842 GCATGCACCTATATATTTTCTCGC 58.436 41.667 14.21 0.00 0.00 5.03
1594 1664 4.802051 GCATGGGCTCCCTCGCAA 62.802 66.667 6.50 0.00 36.96 4.85
1621 1699 4.952262 TGCATGCTTCAGTTAGTCATTC 57.048 40.909 20.33 0.00 0.00 2.67
1625 1703 2.642311 TGCTTCAGTTAGTCATTCCCCA 59.358 45.455 0.00 0.00 0.00 4.96
1634 1725 7.294720 TCAGTTAGTCATTCCCCATTATGGTAT 59.705 37.037 10.65 0.00 35.17 2.73
1635 1726 7.607991 CAGTTAGTCATTCCCCATTATGGTATC 59.392 40.741 10.65 0.00 35.17 2.24
1636 1727 7.517604 AGTTAGTCATTCCCCATTATGGTATCT 59.482 37.037 10.65 1.99 35.17 1.98
1637 1728 8.822805 GTTAGTCATTCCCCATTATGGTATCTA 58.177 37.037 10.65 1.15 35.17 1.98
1638 1729 7.888514 AGTCATTCCCCATTATGGTATCTAA 57.111 36.000 10.65 0.00 35.17 2.10
1639 1730 7.922382 AGTCATTCCCCATTATGGTATCTAAG 58.078 38.462 10.65 0.00 35.17 2.18
1640 1731 7.517604 AGTCATTCCCCATTATGGTATCTAAGT 59.482 37.037 10.65 0.00 35.17 2.24
1641 1732 7.607991 GTCATTCCCCATTATGGTATCTAAGTG 59.392 40.741 10.65 0.00 35.17 3.16
1642 1733 5.499004 TCCCCATTATGGTATCTAAGTGC 57.501 43.478 10.65 0.00 35.17 4.40
1643 1734 4.910913 TCCCCATTATGGTATCTAAGTGCA 59.089 41.667 10.65 0.00 35.17 4.57
1644 1735 5.551583 TCCCCATTATGGTATCTAAGTGCAT 59.448 40.000 10.65 0.00 35.17 3.96
1645 1736 5.649395 CCCCATTATGGTATCTAAGTGCATG 59.351 44.000 10.65 0.00 35.17 4.06
1646 1737 6.475504 CCCATTATGGTATCTAAGTGCATGA 58.524 40.000 10.65 0.00 35.17 3.07
1663 1799 8.970691 AGTGCATGATTCAAGTATTTGTAAAC 57.029 30.769 0.00 0.00 35.73 2.01
1687 1823 7.444299 ACGGGTATATGTACGTGGAATAAAAT 58.556 34.615 0.00 0.00 38.24 1.82
1735 1874 0.180642 TTGTGCGGGTGTTCAGGTTA 59.819 50.000 0.00 0.00 0.00 2.85
1835 2010 3.244526 TGGCTGCTACTTCATGTTTCTCA 60.245 43.478 0.00 0.00 0.00 3.27
1837 2012 4.034975 GGCTGCTACTTCATGTTTCTCATC 59.965 45.833 0.00 0.00 34.09 2.92
1839 2014 4.820897 TGCTACTTCATGTTTCTCATCGT 58.179 39.130 0.00 0.00 34.09 3.73
1840 2015 4.627035 TGCTACTTCATGTTTCTCATCGTG 59.373 41.667 0.00 0.00 34.09 4.35
1841 2016 4.033358 GCTACTTCATGTTTCTCATCGTGG 59.967 45.833 0.00 0.00 34.09 4.94
1842 2017 2.744202 ACTTCATGTTTCTCATCGTGGC 59.256 45.455 0.00 0.00 34.09 5.01
1843 2018 1.737838 TCATGTTTCTCATCGTGGCC 58.262 50.000 0.00 0.00 34.09 5.36
1844 2019 1.003003 TCATGTTTCTCATCGTGGCCA 59.997 47.619 0.00 0.00 34.09 5.36
1845 2020 1.131126 CATGTTTCTCATCGTGGCCAC 59.869 52.381 26.78 26.78 34.09 5.01
1983 3331 8.109634 TGTTAGCTAAATCAAGGAAGGAAGAAT 58.890 33.333 7.99 0.00 0.00 2.40
1992 3340 6.837312 TCAAGGAAGGAAGAATCACTTAACA 58.163 36.000 0.00 0.00 39.13 2.41
2075 3424 6.544038 TGTTGATCCATAAGAATGTATGCG 57.456 37.500 0.00 0.00 31.24 4.73
2167 3613 1.689273 GGCTGGGTATGACTCGAGAAT 59.311 52.381 21.68 14.42 0.00 2.40
2279 3819 9.673454 CACATCATTTGGATATACATGTCTTTG 57.327 33.333 0.00 0.00 33.95 2.77
2291 3831 4.589908 ACATGTCTTTGAGGAATGGGTAC 58.410 43.478 0.00 0.00 0.00 3.34
2292 3832 3.328382 TGTCTTTGAGGAATGGGTACG 57.672 47.619 0.00 0.00 0.00 3.67
2293 3833 2.635915 TGTCTTTGAGGAATGGGTACGT 59.364 45.455 0.00 0.00 0.00 3.57
2328 3868 7.119992 ACATGCAACTTTACGAATATGTTGGTA 59.880 33.333 0.00 0.00 38.57 3.25
2332 3872 8.846607 GCAACTTTACGAATATGTTGGTAAAAG 58.153 33.333 18.31 15.13 43.32 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 6.265196 TGTGCAGTAAACTCAGATCCAAAATT 59.735 34.615 0.00 0.00 0.00 1.82
63 95 4.937620 TCATTGTGCAGTAAACTCAGATCC 59.062 41.667 0.00 0.00 0.00 3.36
75 107 5.010922 ACACCATAATGTTTCATTGTGCAGT 59.989 36.000 11.72 9.66 0.00 4.40
98 130 8.965986 GGTTTTCCTCTCATTTTAATGTGTAC 57.034 34.615 2.66 0.00 36.05 2.90
150 184 7.329717 TGTTATGTGTTTTCTGGTTTTGACAAC 59.670 33.333 0.00 0.00 0.00 3.32
172 206 3.192422 CCATTGCTTTGGAATCCGTGTTA 59.808 43.478 0.00 0.00 39.25 2.41
173 207 2.029110 CCATTGCTTTGGAATCCGTGTT 60.029 45.455 0.00 0.00 39.25 3.32
179 213 3.431207 CCATCCACCATTGCTTTGGAATC 60.431 47.826 11.80 0.00 42.71 2.52
183 217 1.066716 CACCATCCACCATTGCTTTGG 60.067 52.381 4.20 4.20 42.82 3.28
341 375 2.046285 AAATTCGGCCCAAGCTCCG 61.046 57.895 5.25 5.25 46.52 4.63
342 376 1.250840 ACAAATTCGGCCCAAGCTCC 61.251 55.000 0.00 0.00 39.73 4.70
343 377 0.109132 CACAAATTCGGCCCAAGCTC 60.109 55.000 0.00 0.00 39.73 4.09
344 378 1.535204 CCACAAATTCGGCCCAAGCT 61.535 55.000 0.00 0.00 39.73 3.74
345 379 1.079888 CCACAAATTCGGCCCAAGC 60.080 57.895 0.00 0.00 38.76 4.01
346 380 0.527565 CTCCACAAATTCGGCCCAAG 59.472 55.000 0.00 0.00 0.00 3.61
347 381 0.897863 CCTCCACAAATTCGGCCCAA 60.898 55.000 0.00 0.00 0.00 4.12
348 382 1.304052 CCTCCACAAATTCGGCCCA 60.304 57.895 0.00 0.00 0.00 5.36
349 383 2.052104 CCCTCCACAAATTCGGCCC 61.052 63.158 0.00 0.00 0.00 5.80
350 384 2.052104 CCCCTCCACAAATTCGGCC 61.052 63.158 0.00 0.00 0.00 6.13
351 385 2.710902 GCCCCTCCACAAATTCGGC 61.711 63.158 0.00 0.00 0.00 5.54
352 386 0.897863 TTGCCCCTCCACAAATTCGG 60.898 55.000 0.00 0.00 0.00 4.30
353 387 0.965439 TTTGCCCCTCCACAAATTCG 59.035 50.000 0.00 0.00 31.09 3.34
354 388 2.355007 CCATTTGCCCCTCCACAAATTC 60.355 50.000 0.00 0.00 42.34 2.17
355 389 1.629861 CCATTTGCCCCTCCACAAATT 59.370 47.619 0.00 0.00 42.34 1.82
356 390 1.278537 CCATTTGCCCCTCCACAAAT 58.721 50.000 0.00 0.00 45.03 2.32
357 391 0.835543 CCCATTTGCCCCTCCACAAA 60.836 55.000 0.00 0.00 39.87 2.83
358 392 1.229145 CCCATTTGCCCCTCCACAA 60.229 57.895 0.00 0.00 0.00 3.33
359 393 2.444696 CCCATTTGCCCCTCCACA 59.555 61.111 0.00 0.00 0.00 4.17
360 394 3.076916 GCCCATTTGCCCCTCCAC 61.077 66.667 0.00 0.00 0.00 4.02
361 395 3.275271 AGCCCATTTGCCCCTCCA 61.275 61.111 0.00 0.00 0.00 3.86
362 396 2.761213 CAGCCCATTTGCCCCTCC 60.761 66.667 0.00 0.00 0.00 4.30
363 397 2.761213 CCAGCCCATTTGCCCCTC 60.761 66.667 0.00 0.00 0.00 4.30
364 398 3.275271 TCCAGCCCATTTGCCCCT 61.275 61.111 0.00 0.00 0.00 4.79
365 399 2.761213 CTCCAGCCCATTTGCCCC 60.761 66.667 0.00 0.00 0.00 5.80
366 400 2.761213 CCTCCAGCCCATTTGCCC 60.761 66.667 0.00 0.00 0.00 5.36
367 401 2.761213 CCCTCCAGCCCATTTGCC 60.761 66.667 0.00 0.00 0.00 4.52
368 402 2.761213 CCCCTCCAGCCCATTTGC 60.761 66.667 0.00 0.00 0.00 3.68
369 403 2.761213 GCCCCTCCAGCCCATTTG 60.761 66.667 0.00 0.00 0.00 2.32
370 404 2.810488 CTTGCCCCTCCAGCCCATTT 62.810 60.000 0.00 0.00 0.00 2.32
371 405 3.275271 TTGCCCCTCCAGCCCATT 61.275 61.111 0.00 0.00 0.00 3.16
372 406 3.747579 CTTGCCCCTCCAGCCCAT 61.748 66.667 0.00 0.00 0.00 4.00
374 408 3.224007 TTTCTTGCCCCTCCAGCCC 62.224 63.158 0.00 0.00 0.00 5.19
375 409 1.979155 GTTTCTTGCCCCTCCAGCC 60.979 63.158 0.00 0.00 0.00 4.85
376 410 0.613012 ATGTTTCTTGCCCCTCCAGC 60.613 55.000 0.00 0.00 0.00 4.85
377 411 1.180029 CATGTTTCTTGCCCCTCCAG 58.820 55.000 0.00 0.00 0.00 3.86
378 412 0.899717 GCATGTTTCTTGCCCCTCCA 60.900 55.000 0.00 0.00 33.95 3.86
379 413 0.613012 AGCATGTTTCTTGCCCCTCC 60.613 55.000 0.00 0.00 41.06 4.30
380 414 1.260544 AAGCATGTTTCTTGCCCCTC 58.739 50.000 0.00 0.00 41.06 4.30
381 415 1.720781 AAAGCATGTTTCTTGCCCCT 58.279 45.000 0.00 0.00 41.06 4.79
382 416 2.549064 AAAAGCATGTTTCTTGCCCC 57.451 45.000 0.00 0.00 41.06 5.80
383 417 4.257267 ACTAAAAGCATGTTTCTTGCCC 57.743 40.909 0.00 0.00 41.06 5.36
384 418 5.752955 TCAAACTAAAAGCATGTTTCTTGCC 59.247 36.000 0.00 0.00 41.06 4.52
385 419 6.826893 TCAAACTAAAAGCATGTTTCTTGC 57.173 33.333 0.00 0.42 40.45 4.01
392 426 9.260002 CCAGTTAAAATCAAACTAAAAGCATGT 57.740 29.630 0.00 0.00 35.44 3.21
393 427 8.711457 CCCAGTTAAAATCAAACTAAAAGCATG 58.289 33.333 0.00 0.00 35.44 4.06
394 428 7.387673 GCCCAGTTAAAATCAAACTAAAAGCAT 59.612 33.333 0.00 0.00 35.44 3.79
395 429 6.704050 GCCCAGTTAAAATCAAACTAAAAGCA 59.296 34.615 0.00 0.00 35.44 3.91
396 430 6.704050 TGCCCAGTTAAAATCAAACTAAAAGC 59.296 34.615 0.00 0.00 35.44 3.51
397 431 8.831715 ATGCCCAGTTAAAATCAAACTAAAAG 57.168 30.769 0.00 0.00 35.44 2.27
399 433 9.868277 CATATGCCCAGTTAAAATCAAACTAAA 57.132 29.630 0.00 0.00 35.44 1.85
400 434 8.474025 CCATATGCCCAGTTAAAATCAAACTAA 58.526 33.333 0.00 0.00 35.44 2.24
401 435 7.069331 CCCATATGCCCAGTTAAAATCAAACTA 59.931 37.037 0.00 0.00 35.44 2.24
402 436 6.127083 CCCATATGCCCAGTTAAAATCAAACT 60.127 38.462 0.00 0.00 37.67 2.66
403 437 6.048509 CCCATATGCCCAGTTAAAATCAAAC 58.951 40.000 0.00 0.00 0.00 2.93
404 438 5.396213 GCCCATATGCCCAGTTAAAATCAAA 60.396 40.000 0.00 0.00 0.00 2.69
405 439 4.100808 GCCCATATGCCCAGTTAAAATCAA 59.899 41.667 0.00 0.00 0.00 2.57
406 440 3.640967 GCCCATATGCCCAGTTAAAATCA 59.359 43.478 0.00 0.00 0.00 2.57
407 441 3.897505 AGCCCATATGCCCAGTTAAAATC 59.102 43.478 0.00 0.00 0.00 2.17
408 442 3.642848 CAGCCCATATGCCCAGTTAAAAT 59.357 43.478 0.00 0.00 0.00 1.82
409 443 3.030291 CAGCCCATATGCCCAGTTAAAA 58.970 45.455 0.00 0.00 0.00 1.52
410 444 2.243478 TCAGCCCATATGCCCAGTTAAA 59.757 45.455 0.00 0.00 0.00 1.52
411 445 1.849692 TCAGCCCATATGCCCAGTTAA 59.150 47.619 0.00 0.00 0.00 2.01
412 446 1.517238 TCAGCCCATATGCCCAGTTA 58.483 50.000 0.00 0.00 0.00 2.24
413 447 0.630673 TTCAGCCCATATGCCCAGTT 59.369 50.000 0.00 0.00 0.00 3.16
414 448 0.855598 ATTCAGCCCATATGCCCAGT 59.144 50.000 0.00 0.00 0.00 4.00
415 449 2.040813 AGTATTCAGCCCATATGCCCAG 59.959 50.000 0.00 0.00 0.00 4.45
416 450 2.065007 AGTATTCAGCCCATATGCCCA 58.935 47.619 0.00 0.00 0.00 5.36
417 451 2.887151 AGTATTCAGCCCATATGCCC 57.113 50.000 0.00 0.00 0.00 5.36
418 452 4.826274 TCTAGTATTCAGCCCATATGCC 57.174 45.455 0.00 0.00 0.00 4.40
677 711 1.298859 GCTTAACACCAGTGGCGGAG 61.299 60.000 9.78 1.15 34.19 4.63
678 712 1.302192 GCTTAACACCAGTGGCGGA 60.302 57.895 9.78 0.00 34.19 5.54
679 713 0.960364 ATGCTTAACACCAGTGGCGG 60.960 55.000 9.78 4.24 34.19 6.13
680 714 0.447801 GATGCTTAACACCAGTGGCG 59.552 55.000 9.78 1.17 34.19 5.69
681 715 0.811281 GGATGCTTAACACCAGTGGC 59.189 55.000 9.78 0.00 34.19 5.01
682 716 1.271871 TGGGATGCTTAACACCAGTGG 60.272 52.381 7.91 7.91 34.19 4.00
683 717 2.198827 TGGGATGCTTAACACCAGTG 57.801 50.000 0.00 0.00 0.00 3.66
684 718 2.969821 TTGGGATGCTTAACACCAGT 57.030 45.000 0.00 0.00 32.01 4.00
685 719 3.355378 TCATTGGGATGCTTAACACCAG 58.645 45.455 0.00 0.00 33.14 4.00
686 720 3.448093 TCATTGGGATGCTTAACACCA 57.552 42.857 0.00 0.00 33.14 4.17
687 721 4.311816 CATCATTGGGATGCTTAACACC 57.688 45.455 0.00 0.00 46.35 4.16
697 731 1.076850 TGCGTGCCATCATTGGGAT 60.077 52.632 0.00 0.00 46.01 3.85
710 744 5.233476 ACAATTGTAGGATATTACGTGCGTG 59.767 40.000 9.97 0.00 0.00 5.34
746 789 1.004080 ACCACTAGTGCTGCTGCTG 60.004 57.895 17.86 6.00 40.48 4.41
1038 1094 2.680352 GCCACGAGGAGGACCAGA 60.680 66.667 1.86 0.00 38.94 3.86
1098 1157 2.534396 AATCGGTGGGCTTGGGACA 61.534 57.895 0.00 0.00 0.00 4.02
1191 1254 1.229428 CGCAAACCTTCAGCTTCAGA 58.771 50.000 0.00 0.00 0.00 3.27
1206 1269 3.205536 TTCAGCACGTTGGCGCAA 61.206 55.556 10.83 0.00 42.83 4.85
1336 1399 0.543277 TTGAGCTTGATGCCGAGGAT 59.457 50.000 0.00 0.00 44.23 3.24
1410 1473 0.545309 AGCTAGGGCAGGTGAAGTCA 60.545 55.000 0.00 0.00 41.70 3.41
1458 1523 1.202521 ACGATGATGCGATGCAGGTAA 60.203 47.619 0.00 0.00 43.65 2.85
1471 1536 1.257415 GAGTACGACGACGACGATGAT 59.743 52.381 25.15 6.28 42.66 2.45
1515 1583 5.220472 CGAGAAAATATATAGGTGCATGCGG 60.220 44.000 14.09 0.00 0.00 5.69
1553 1623 2.971915 GCACGCGACTGACATATACTAC 59.028 50.000 15.93 0.00 0.00 2.73
1554 1624 2.614983 TGCACGCGACTGACATATACTA 59.385 45.455 15.93 0.00 0.00 1.82
1555 1625 1.404035 TGCACGCGACTGACATATACT 59.596 47.619 15.93 0.00 0.00 2.12
1621 1699 5.241403 TGCACTTAGATACCATAATGGGG 57.759 43.478 0.00 0.00 43.37 4.96
1625 1703 9.797642 TTGAATCATGCACTTAGATACCATAAT 57.202 29.630 0.00 0.00 0.00 1.28
1634 1725 8.565896 ACAAATACTTGAATCATGCACTTAGA 57.434 30.769 0.00 0.00 36.33 2.10
1637 1728 9.410556 GTTTACAAATACTTGAATCATGCACTT 57.589 29.630 0.00 0.00 36.33 3.16
1638 1729 7.750458 CGTTTACAAATACTTGAATCATGCACT 59.250 33.333 0.00 0.00 36.33 4.40
1639 1730 7.008266 CCGTTTACAAATACTTGAATCATGCAC 59.992 37.037 0.00 0.00 36.33 4.57
1640 1731 7.026562 CCGTTTACAAATACTTGAATCATGCA 58.973 34.615 0.00 0.00 36.33 3.96
1641 1732 6.472163 CCCGTTTACAAATACTTGAATCATGC 59.528 38.462 0.00 0.00 36.33 4.06
1642 1733 7.535139 ACCCGTTTACAAATACTTGAATCATG 58.465 34.615 0.00 0.00 36.33 3.07
1643 1734 7.696992 ACCCGTTTACAAATACTTGAATCAT 57.303 32.000 0.00 0.00 36.33 2.45
1644 1735 8.795842 ATACCCGTTTACAAATACTTGAATCA 57.204 30.769 0.00 0.00 36.33 2.57
1663 1799 7.894376 ATTTTATTCCACGTACATATACCCG 57.106 36.000 0.00 0.00 0.00 5.28
1712 1851 1.068434 CCTGAACACCCGCACAAAAAT 59.932 47.619 0.00 0.00 0.00 1.82
1713 1852 0.457851 CCTGAACACCCGCACAAAAA 59.542 50.000 0.00 0.00 0.00 1.94
1735 1874 4.112634 CACATCACGGATCGAGTTAACAT 58.887 43.478 8.61 0.00 0.00 2.71
1835 2010 0.693049 AAAGAAGAGGTGGCCACGAT 59.307 50.000 29.08 20.38 0.00 3.73
1837 2012 0.955919 GGAAAGAAGAGGTGGCCACG 60.956 60.000 29.08 0.00 0.00 4.94
1839 2014 1.149101 AAGGAAAGAAGAGGTGGCCA 58.851 50.000 0.00 0.00 0.00 5.36
1840 2015 1.889170 CAAAGGAAAGAAGAGGTGGCC 59.111 52.381 0.00 0.00 0.00 5.36
1841 2016 1.270826 GCAAAGGAAAGAAGAGGTGGC 59.729 52.381 0.00 0.00 0.00 5.01
1842 2017 1.889170 GGCAAAGGAAAGAAGAGGTGG 59.111 52.381 0.00 0.00 0.00 4.61
1843 2018 2.555757 CTGGCAAAGGAAAGAAGAGGTG 59.444 50.000 0.00 0.00 0.00 4.00
1844 2019 2.175715 ACTGGCAAAGGAAAGAAGAGGT 59.824 45.455 0.00 0.00 0.00 3.85
1845 2020 2.868899 ACTGGCAAAGGAAAGAAGAGG 58.131 47.619 0.00 0.00 0.00 3.69
1983 3331 2.039348 GGTACCCCAAGCTGTTAAGTGA 59.961 50.000 0.00 0.00 0.00 3.41
2053 3402 6.545504 ACGCATACATTCTTATGGATCAAC 57.454 37.500 0.00 0.00 32.76 3.18
2120 3561 7.736447 AGAGAGCCACAAATTATATGCTAAC 57.264 36.000 0.00 0.00 0.00 2.34
2199 3736 7.959175 TGGTTTGGTACTAGACATGTATATCC 58.041 38.462 0.00 4.14 0.00 2.59
2202 3739 7.400915 AGGTTGGTTTGGTACTAGACATGTATA 59.599 37.037 0.00 0.00 0.00 1.47
2205 3742 4.349930 AGGTTGGTTTGGTACTAGACATGT 59.650 41.667 0.00 0.00 0.00 3.21
2208 3745 5.376756 AAAGGTTGGTTTGGTACTAGACA 57.623 39.130 0.00 0.00 0.00 3.41
2254 3792 9.631257 TCAAAGACATGTATATCCAAATGATGT 57.369 29.630 0.00 0.00 34.76 3.06
2270 3810 3.623060 CGTACCCATTCCTCAAAGACATG 59.377 47.826 0.00 0.00 0.00 3.21
2271 3811 3.263425 ACGTACCCATTCCTCAAAGACAT 59.737 43.478 0.00 0.00 0.00 3.06
2279 3819 1.101331 AGACGACGTACCCATTCCTC 58.899 55.000 0.00 0.00 0.00 3.71
2291 3831 1.526887 AGTTGCATGTTGAAGACGACG 59.473 47.619 0.00 0.00 33.40 5.12
2292 3832 3.609103 AAGTTGCATGTTGAAGACGAC 57.391 42.857 0.00 0.00 0.00 4.34
2293 3833 4.318475 CGTAAAGTTGCATGTTGAAGACGA 60.318 41.667 0.00 0.00 0.00 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.