Multiple sequence alignment - TraesCS5A01G518200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G518200 chr5A 100.000 2678 0 0 1 2678 680579018 680581695 0.000000e+00 4946.0
1 TraesCS5A01G518200 chr5A 93.370 181 11 1 703 883 394260197 394260018 1.580000e-67 267.0
2 TraesCS5A01G518200 chr5A 93.370 181 11 1 703 883 554692206 554692027 1.580000e-67 267.0
3 TraesCS5A01G518200 chr5A 93.529 170 7 3 536 701 44940758 44940927 1.590000e-62 250.0
4 TraesCS5A01G518200 chr5A 91.713 181 14 1 703 883 664787356 664787177 1.590000e-62 250.0
5 TraesCS5A01G518200 chr4B 90.889 1811 111 23 897 2678 642543988 642545773 0.000000e+00 2381.0
6 TraesCS5A01G518200 chr4B 87.552 241 24 4 249 489 642543757 642543991 9.450000e-70 274.0
7 TraesCS5A01G518200 chr4D 95.714 980 22 13 897 1862 499554612 499555585 0.000000e+00 1559.0
8 TraesCS5A01G518200 chr4D 88.507 670 48 7 2031 2678 499555821 499556483 0.000000e+00 784.0
9 TraesCS5A01G518200 chr4D 86.301 219 13 7 284 489 499554401 499554615 3.470000e-54 222.0
10 TraesCS5A01G518200 chr4D 87.234 94 6 4 1932 2025 499555575 499555662 4.720000e-18 102.0
11 TraesCS5A01G518200 chr4A 91.848 184 14 1 700 883 426781320 426781502 3.420000e-64 255.0
12 TraesCS5A01G518200 chr1A 92.265 181 13 1 703 883 21600512 21600333 3.420000e-64 255.0
13 TraesCS5A01G518200 chr1A 91.351 185 14 2 700 883 96458489 96458672 4.430000e-63 252.0
14 TraesCS5A01G518200 chr1A 91.304 184 15 1 700 883 65654419 65654601 1.590000e-62 250.0
15 TraesCS5A01G518200 chr6A 93.143 175 9 3 539 712 369493485 369493657 1.230000e-63 254.0
16 TraesCS5A01G518200 chr6A 92.982 171 10 2 533 701 38743444 38743614 5.720000e-62 248.0
17 TraesCS5A01G518200 chr6A 89.441 161 9 2 84 237 55882008 55882167 2.100000e-46 196.0
18 TraesCS5A01G518200 chr3A 94.083 169 7 3 539 705 630797815 630797648 1.230000e-63 254.0
19 TraesCS5A01G518200 chr3A 89.394 198 18 3 687 883 169225662 169225857 2.060000e-61 246.0
20 TraesCS5A01G518200 chr3A 88.820 161 9 4 85 237 695122030 695121871 3.520000e-44 189.0
21 TraesCS5A01G518200 chrUn 93.023 172 10 2 531 701 318699359 318699529 1.590000e-62 250.0
22 TraesCS5A01G518200 chr2A 91.304 184 15 1 700 883 61973356 61973538 1.590000e-62 250.0
23 TraesCS5A01G518200 chr2A 88.535 157 15 2 84 237 758066889 758066733 1.270000e-43 187.0
24 TraesCS5A01G518200 chr2A 97.143 35 1 0 507 541 750146068 750146034 2.880000e-05 60.2
25 TraesCS5A01G518200 chr5B 93.452 168 10 1 535 701 45810579 45810412 5.720000e-62 248.0
26 TraesCS5A01G518200 chr5B 89.535 172 8 4 73 237 708880581 708880749 2.700000e-50 209.0
27 TraesCS5A01G518200 chr3D 91.713 181 12 3 536 713 603140694 603140514 5.720000e-62 248.0
28 TraesCS5A01G518200 chr1B 90.323 186 12 4 518 702 672032594 672032774 3.450000e-59 239.0
29 TraesCS5A01G518200 chr5D 89.474 190 17 3 517 704 537399749 537399561 1.240000e-58 237.0
30 TraesCS5A01G518200 chr5D 87.500 168 14 3 76 237 51121200 51121366 1.270000e-43 187.0
31 TraesCS5A01G518200 chr7A 89.441 161 10 1 84 237 43179729 43179889 2.100000e-46 196.0
32 TraesCS5A01G518200 chr6B 89.441 161 9 2 85 237 680182301 680182461 2.100000e-46 196.0
33 TraesCS5A01G518200 chr6B 92.308 39 3 0 507 545 42229188 42229150 3.720000e-04 56.5
34 TraesCS5A01G518200 chr2B 88.750 160 11 3 85 237 142654524 142654683 3.520000e-44 189.0
35 TraesCS5A01G518200 chr6D 86.207 174 14 5 71 237 309070208 309070038 2.120000e-41 180.0
36 TraesCS5A01G518200 chr7B 100.000 31 0 0 512 542 202773776 202773746 1.040000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G518200 chr5A 680579018 680581695 2677 False 4946.00 4946 100.0000 1 2678 1 chr5A.!!$F2 2677
1 TraesCS5A01G518200 chr4B 642543757 642545773 2016 False 1327.50 2381 89.2205 249 2678 2 chr4B.!!$F1 2429
2 TraesCS5A01G518200 chr4D 499554401 499556483 2082 False 666.75 1559 89.4390 284 2678 4 chr4D.!!$F1 2394

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
143 144 0.111704 CGCGCATACACTATGAACGC 60.112 55.0 8.75 0.0 41.24 4.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1915 1948 1.814394 CTCATGACACCAACCATGTGG 59.186 52.381 0.85 0.85 44.92 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 8.682297 AGTAGGAAAGAGTAAAGGATTAAGGT 57.318 34.615 0.00 0.00 0.00 3.50
45 46 8.541234 AGTAGGAAAGAGTAAAGGATTAAGGTG 58.459 37.037 0.00 0.00 0.00 4.00
46 47 6.722328 AGGAAAGAGTAAAGGATTAAGGTGG 58.278 40.000 0.00 0.00 0.00 4.61
47 48 5.357314 GGAAAGAGTAAAGGATTAAGGTGGC 59.643 44.000 0.00 0.00 0.00 5.01
48 49 5.780958 AAGAGTAAAGGATTAAGGTGGCT 57.219 39.130 0.00 0.00 0.00 4.75
49 50 5.780958 AGAGTAAAGGATTAAGGTGGCTT 57.219 39.130 0.00 0.00 0.00 4.35
50 51 5.501156 AGAGTAAAGGATTAAGGTGGCTTG 58.499 41.667 0.00 0.00 0.00 4.01
51 52 5.014228 AGAGTAAAGGATTAAGGTGGCTTGT 59.986 40.000 0.00 0.00 0.00 3.16
52 53 5.254115 AGTAAAGGATTAAGGTGGCTTGTC 58.746 41.667 0.00 0.00 0.00 3.18
53 54 2.808906 AGGATTAAGGTGGCTTGTCC 57.191 50.000 0.00 0.00 0.00 4.02
54 55 1.992557 AGGATTAAGGTGGCTTGTCCA 59.007 47.619 0.00 0.00 44.18 4.02
63 64 1.909700 TGGCTTGTCCACTTTGATCC 58.090 50.000 0.00 0.00 40.72 3.36
64 65 1.425066 TGGCTTGTCCACTTTGATCCT 59.575 47.619 0.00 0.00 40.72 3.24
65 66 2.158475 TGGCTTGTCCACTTTGATCCTT 60.158 45.455 0.00 0.00 40.72 3.36
66 67 3.073798 TGGCTTGTCCACTTTGATCCTTA 59.926 43.478 0.00 0.00 40.72 2.69
67 68 4.079253 GGCTTGTCCACTTTGATCCTTAA 58.921 43.478 0.00 0.00 34.01 1.85
68 69 4.522789 GGCTTGTCCACTTTGATCCTTAAA 59.477 41.667 0.00 0.00 34.01 1.52
69 70 5.010617 GGCTTGTCCACTTTGATCCTTAAAA 59.989 40.000 0.00 0.00 34.01 1.52
70 71 6.462347 GGCTTGTCCACTTTGATCCTTAAAAA 60.462 38.462 0.00 0.00 34.01 1.94
105 106 9.621629 TTTCCTTTTCTTTAACATCAGTACAGA 57.378 29.630 0.00 0.00 0.00 3.41
106 107 8.603242 TCCTTTTCTTTAACATCAGTACAGAC 57.397 34.615 0.00 0.00 0.00 3.51
107 108 8.208224 TCCTTTTCTTTAACATCAGTACAGACA 58.792 33.333 0.00 0.00 0.00 3.41
108 109 9.003658 CCTTTTCTTTAACATCAGTACAGACAT 57.996 33.333 0.00 0.00 0.00 3.06
112 113 8.703604 TCTTTAACATCAGTACAGACATAAGC 57.296 34.615 0.00 0.00 0.00 3.09
113 114 7.488150 TCTTTAACATCAGTACAGACATAAGCG 59.512 37.037 0.00 0.00 0.00 4.68
114 115 3.448686 ACATCAGTACAGACATAAGCGC 58.551 45.455 0.00 0.00 0.00 5.92
115 116 3.131223 ACATCAGTACAGACATAAGCGCT 59.869 43.478 2.64 2.64 0.00 5.92
116 117 3.422417 TCAGTACAGACATAAGCGCTC 57.578 47.619 12.06 0.00 0.00 5.03
117 118 2.752903 TCAGTACAGACATAAGCGCTCA 59.247 45.455 12.06 0.00 0.00 4.26
118 119 3.381590 TCAGTACAGACATAAGCGCTCAT 59.618 43.478 12.06 0.00 0.00 2.90
119 120 4.578928 TCAGTACAGACATAAGCGCTCATA 59.421 41.667 12.06 0.00 0.00 2.15
120 121 5.241728 TCAGTACAGACATAAGCGCTCATAT 59.758 40.000 12.06 2.36 0.00 1.78
121 122 6.430000 TCAGTACAGACATAAGCGCTCATATA 59.570 38.462 12.06 0.00 0.00 0.86
122 123 6.524933 CAGTACAGACATAAGCGCTCATATAC 59.475 42.308 12.06 5.98 0.00 1.47
123 124 5.453567 ACAGACATAAGCGCTCATATACA 57.546 39.130 12.06 0.00 0.00 2.29
124 125 5.223382 ACAGACATAAGCGCTCATATACAC 58.777 41.667 12.06 1.26 0.00 2.90
125 126 4.322009 CAGACATAAGCGCTCATATACACG 59.678 45.833 12.06 0.00 0.00 4.49
129 130 3.916439 CGCTCATATACACGCGCA 58.084 55.556 5.73 0.00 39.11 6.09
130 131 2.434688 CGCTCATATACACGCGCAT 58.565 52.632 5.73 0.00 39.11 4.73
131 132 1.613270 CGCTCATATACACGCGCATA 58.387 50.000 5.73 1.53 39.11 3.14
132 133 1.317611 CGCTCATATACACGCGCATAC 59.682 52.381 5.73 0.00 39.11 2.39
133 134 2.324860 GCTCATATACACGCGCATACA 58.675 47.619 5.73 0.00 0.00 2.29
134 135 2.090658 GCTCATATACACGCGCATACAC 59.909 50.000 5.73 0.00 0.00 2.90
135 136 3.565516 CTCATATACACGCGCATACACT 58.434 45.455 5.73 0.00 0.00 3.55
136 137 4.719040 CTCATATACACGCGCATACACTA 58.281 43.478 5.73 0.00 0.00 2.74
137 138 5.305139 TCATATACACGCGCATACACTAT 57.695 39.130 5.73 0.00 0.00 2.12
138 139 5.092781 TCATATACACGCGCATACACTATG 58.907 41.667 5.73 7.31 39.18 2.23
139 140 3.636282 ATACACGCGCATACACTATGA 57.364 42.857 5.73 0.00 38.45 2.15
140 141 2.287393 ACACGCGCATACACTATGAA 57.713 45.000 5.73 0.00 38.45 2.57
141 142 1.924524 ACACGCGCATACACTATGAAC 59.075 47.619 5.73 0.00 38.45 3.18
142 143 1.072154 CACGCGCATACACTATGAACG 60.072 52.381 5.73 0.00 39.96 3.95
143 144 0.111704 CGCGCATACACTATGAACGC 60.112 55.000 8.75 0.00 41.24 4.84
144 145 0.927537 GCGCATACACTATGAACGCA 59.072 50.000 0.30 0.00 42.88 5.24
145 146 1.332028 GCGCATACACTATGAACGCAC 60.332 52.381 0.30 0.00 42.88 5.34
146 147 1.923864 CGCATACACTATGAACGCACA 59.076 47.619 0.00 0.00 38.45 4.57
147 148 2.285026 CGCATACACTATGAACGCACAC 60.285 50.000 0.00 0.00 38.45 3.82
148 149 2.670905 GCATACACTATGAACGCACACA 59.329 45.455 0.00 0.00 38.45 3.72
149 150 3.483574 GCATACACTATGAACGCACACAC 60.484 47.826 0.00 0.00 38.45 3.82
150 151 2.232756 ACACTATGAACGCACACACA 57.767 45.000 0.00 0.00 0.00 3.72
151 152 1.864711 ACACTATGAACGCACACACAC 59.135 47.619 0.00 0.00 0.00 3.82
152 153 1.864082 CACTATGAACGCACACACACA 59.136 47.619 0.00 0.00 0.00 3.72
153 154 1.864711 ACTATGAACGCACACACACAC 59.135 47.619 0.00 0.00 0.00 3.82
154 155 1.864082 CTATGAACGCACACACACACA 59.136 47.619 0.00 0.00 0.00 3.72
155 156 0.376852 ATGAACGCACACACACACAC 59.623 50.000 0.00 0.00 0.00 3.82
156 157 1.061887 GAACGCACACACACACACC 59.938 57.895 0.00 0.00 0.00 4.16
157 158 2.317685 GAACGCACACACACACACCC 62.318 60.000 0.00 0.00 0.00 4.61
158 159 2.513666 CGCACACACACACACCCT 60.514 61.111 0.00 0.00 0.00 4.34
159 160 1.227409 CGCACACACACACACCCTA 60.227 57.895 0.00 0.00 0.00 3.53
160 161 1.495584 CGCACACACACACACCCTAC 61.496 60.000 0.00 0.00 0.00 3.18
161 162 1.164041 GCACACACACACACCCTACC 61.164 60.000 0.00 0.00 0.00 3.18
162 163 0.468226 CACACACACACACCCTACCT 59.532 55.000 0.00 0.00 0.00 3.08
163 164 0.756903 ACACACACACACCCTACCTC 59.243 55.000 0.00 0.00 0.00 3.85
164 165 1.048601 CACACACACACCCTACCTCT 58.951 55.000 0.00 0.00 0.00 3.69
165 166 2.244695 CACACACACACCCTACCTCTA 58.755 52.381 0.00 0.00 0.00 2.43
166 167 2.832129 CACACACACACCCTACCTCTAT 59.168 50.000 0.00 0.00 0.00 1.98
167 168 2.832129 ACACACACACCCTACCTCTATG 59.168 50.000 0.00 0.00 0.00 2.23
168 169 3.096852 CACACACACCCTACCTCTATGA 58.903 50.000 0.00 0.00 0.00 2.15
169 170 3.131223 CACACACACCCTACCTCTATGAG 59.869 52.174 0.00 0.00 0.00 2.90
170 171 2.101582 CACACACCCTACCTCTATGAGC 59.898 54.545 0.00 0.00 0.00 4.26
171 172 2.292257 ACACACCCTACCTCTATGAGCA 60.292 50.000 0.00 0.00 0.00 4.26
172 173 2.101582 CACACCCTACCTCTATGAGCAC 59.898 54.545 0.00 0.00 0.00 4.40
173 174 1.689273 CACCCTACCTCTATGAGCACC 59.311 57.143 0.00 0.00 0.00 5.01
174 175 1.576272 ACCCTACCTCTATGAGCACCT 59.424 52.381 0.00 0.00 0.00 4.00
175 176 2.243810 CCCTACCTCTATGAGCACCTC 58.756 57.143 0.00 0.00 0.00 3.85
176 177 2.243810 CCTACCTCTATGAGCACCTCC 58.756 57.143 0.00 0.00 0.00 4.30
177 178 1.883275 CTACCTCTATGAGCACCTCCG 59.117 57.143 0.00 0.00 0.00 4.63
178 179 0.259065 ACCTCTATGAGCACCTCCGA 59.741 55.000 0.00 0.00 0.00 4.55
179 180 1.342076 ACCTCTATGAGCACCTCCGAA 60.342 52.381 0.00 0.00 0.00 4.30
180 181 1.757118 CCTCTATGAGCACCTCCGAAA 59.243 52.381 0.00 0.00 0.00 3.46
181 182 2.223923 CCTCTATGAGCACCTCCGAAAG 60.224 54.545 0.00 0.00 0.00 2.62
182 183 2.690497 CTCTATGAGCACCTCCGAAAGA 59.310 50.000 0.00 0.00 0.00 2.52
183 184 2.427453 TCTATGAGCACCTCCGAAAGAC 59.573 50.000 0.00 0.00 0.00 3.01
184 185 1.270907 ATGAGCACCTCCGAAAGACT 58.729 50.000 0.00 0.00 0.00 3.24
185 186 0.318441 TGAGCACCTCCGAAAGACTG 59.682 55.000 0.00 0.00 0.00 3.51
186 187 0.603569 GAGCACCTCCGAAAGACTGA 59.396 55.000 0.00 0.00 0.00 3.41
187 188 0.605589 AGCACCTCCGAAAGACTGAG 59.394 55.000 0.00 0.00 0.00 3.35
188 189 1.016653 GCACCTCCGAAAGACTGAGC 61.017 60.000 0.00 0.00 0.00 4.26
189 190 0.390472 CACCTCCGAAAGACTGAGCC 60.390 60.000 0.00 0.00 0.00 4.70
190 191 1.153745 CCTCCGAAAGACTGAGCCG 60.154 63.158 0.00 0.00 0.00 5.52
191 192 1.153745 CTCCGAAAGACTGAGCCGG 60.154 63.158 0.00 0.00 41.36 6.13
192 193 2.815647 CCGAAAGACTGAGCCGGC 60.816 66.667 21.89 21.89 33.47 6.13
193 194 2.048222 CGAAAGACTGAGCCGGCA 60.048 61.111 31.54 7.98 0.00 5.69
194 195 1.448540 CGAAAGACTGAGCCGGCAT 60.449 57.895 31.54 14.28 0.00 4.40
195 196 0.179111 CGAAAGACTGAGCCGGCATA 60.179 55.000 31.54 16.21 0.00 3.14
196 197 1.539065 CGAAAGACTGAGCCGGCATAT 60.539 52.381 31.54 8.11 0.00 1.78
197 198 2.139118 GAAAGACTGAGCCGGCATATC 58.861 52.381 31.54 18.63 0.00 1.63
198 199 1.123077 AAGACTGAGCCGGCATATCA 58.877 50.000 31.54 22.44 0.00 2.15
199 200 1.346062 AGACTGAGCCGGCATATCAT 58.654 50.000 31.54 13.17 0.00 2.45
200 201 1.274728 AGACTGAGCCGGCATATCATC 59.725 52.381 31.54 19.98 0.00 2.92
201 202 1.274728 GACTGAGCCGGCATATCATCT 59.725 52.381 31.54 11.40 0.00 2.90
202 203 1.696336 ACTGAGCCGGCATATCATCTT 59.304 47.619 31.54 3.33 0.00 2.40
203 204 2.105477 ACTGAGCCGGCATATCATCTTT 59.895 45.455 31.54 2.38 0.00 2.52
204 205 3.324846 ACTGAGCCGGCATATCATCTTTA 59.675 43.478 31.54 0.00 0.00 1.85
205 206 4.202357 ACTGAGCCGGCATATCATCTTTAA 60.202 41.667 31.54 0.00 0.00 1.52
206 207 4.713553 TGAGCCGGCATATCATCTTTAAA 58.286 39.130 31.54 0.00 0.00 1.52
207 208 5.316167 TGAGCCGGCATATCATCTTTAAAT 58.684 37.500 31.54 0.06 0.00 1.40
208 209 5.769662 TGAGCCGGCATATCATCTTTAAATT 59.230 36.000 31.54 0.00 0.00 1.82
209 210 6.265196 TGAGCCGGCATATCATCTTTAAATTT 59.735 34.615 31.54 0.00 0.00 1.82
210 211 7.446931 TGAGCCGGCATATCATCTTTAAATTTA 59.553 33.333 31.54 0.00 0.00 1.40
211 212 7.593825 AGCCGGCATATCATCTTTAAATTTAC 58.406 34.615 31.54 0.00 0.00 2.01
212 213 7.230510 AGCCGGCATATCATCTTTAAATTTACA 59.769 33.333 31.54 0.00 0.00 2.41
213 214 7.865385 GCCGGCATATCATCTTTAAATTTACAA 59.135 33.333 24.80 0.00 0.00 2.41
214 215 9.743057 CCGGCATATCATCTTTAAATTTACAAA 57.257 29.630 0.00 0.00 0.00 2.83
236 237 3.207669 CCGTAGGCGCCTAGTCGT 61.208 66.667 36.09 13.13 46.14 4.34
237 238 1.889105 CCGTAGGCGCCTAGTCGTA 60.889 63.158 36.09 14.06 46.14 3.43
238 239 1.439353 CCGTAGGCGCCTAGTCGTAA 61.439 60.000 36.09 13.20 46.14 3.18
239 240 0.378257 CGTAGGCGCCTAGTCGTAAA 59.622 55.000 36.09 12.33 0.00 2.01
240 241 1.202177 CGTAGGCGCCTAGTCGTAAAA 60.202 52.381 36.09 11.48 0.00 1.52
241 242 2.542411 CGTAGGCGCCTAGTCGTAAAAT 60.542 50.000 36.09 9.19 0.00 1.82
242 243 2.220479 AGGCGCCTAGTCGTAAAATC 57.780 50.000 31.86 0.00 0.00 2.17
243 244 1.479323 AGGCGCCTAGTCGTAAAATCA 59.521 47.619 31.86 0.00 0.00 2.57
244 245 2.102588 AGGCGCCTAGTCGTAAAATCAT 59.897 45.455 31.86 0.00 0.00 2.45
245 246 2.870411 GGCGCCTAGTCGTAAAATCATT 59.130 45.455 22.15 0.00 0.00 2.57
246 247 3.303132 GGCGCCTAGTCGTAAAATCATTG 60.303 47.826 22.15 0.00 0.00 2.82
247 248 3.303132 GCGCCTAGTCGTAAAATCATTGG 60.303 47.826 0.00 0.00 0.00 3.16
248 249 4.116961 CGCCTAGTCGTAAAATCATTGGA 58.883 43.478 0.00 0.00 0.00 3.53
249 250 4.569162 CGCCTAGTCGTAAAATCATTGGAA 59.431 41.667 0.00 0.00 0.00 3.53
250 251 5.064198 CGCCTAGTCGTAAAATCATTGGAAA 59.936 40.000 0.00 0.00 0.00 3.13
251 252 6.238374 CGCCTAGTCGTAAAATCATTGGAAAT 60.238 38.462 0.00 0.00 0.00 2.17
252 253 7.042321 CGCCTAGTCGTAAAATCATTGGAAATA 60.042 37.037 0.00 0.00 0.00 1.40
253 254 8.617809 GCCTAGTCGTAAAATCATTGGAAATAA 58.382 33.333 0.00 0.00 0.00 1.40
337 338 7.953710 ACGTTGTAAGAAAATATAAGCGTCAAC 59.046 33.333 0.00 0.00 0.00 3.18
374 387 1.448540 AACAGAGCTTCGGCCGATG 60.449 57.895 31.56 31.18 43.01 3.84
375 388 2.172483 AACAGAGCTTCGGCCGATGT 62.172 55.000 33.52 28.25 43.01 3.06
390 403 1.872952 CGATGTGTGGCTTTGTCAGAA 59.127 47.619 0.00 0.00 0.00 3.02
391 404 2.485426 CGATGTGTGGCTTTGTCAGAAT 59.515 45.455 0.00 0.00 0.00 2.40
392 405 3.425359 CGATGTGTGGCTTTGTCAGAATC 60.425 47.826 0.00 0.00 0.00 2.52
393 406 1.872952 TGTGTGGCTTTGTCAGAATCG 59.127 47.619 0.00 0.00 0.00 3.34
442 455 2.414559 GCCATCACGGTCACAAAAGATG 60.415 50.000 0.00 0.00 36.97 2.90
443 456 2.162208 CCATCACGGTCACAAAAGATGG 59.838 50.000 0.00 0.00 44.35 3.51
444 457 2.631160 TCACGGTCACAAAAGATGGT 57.369 45.000 0.00 0.00 0.00 3.55
445 458 2.489971 TCACGGTCACAAAAGATGGTC 58.510 47.619 0.00 0.00 0.00 4.02
448 461 1.165270 GGTCACAAAAGATGGTCCCG 58.835 55.000 0.00 0.00 0.00 5.14
449 462 1.544759 GGTCACAAAAGATGGTCCCGT 60.545 52.381 0.00 0.00 0.00 5.28
450 463 2.227194 GTCACAAAAGATGGTCCCGTT 58.773 47.619 0.00 0.00 0.00 4.44
464 477 1.029947 CCCGTTGCACCTAATCCACC 61.030 60.000 0.00 0.00 0.00 4.61
489 503 0.533755 CCCTCTCCCTTGCGCATAAG 60.534 60.000 12.75 6.50 0.00 1.73
490 504 0.533755 CCTCTCCCTTGCGCATAAGG 60.534 60.000 19.39 19.39 45.51 2.69
492 506 2.124320 TCCCTTGCGCATAAGGCC 60.124 61.111 20.66 0.00 44.75 5.19
493 507 3.585990 CCCTTGCGCATAAGGCCG 61.586 66.667 20.66 6.34 44.75 6.13
494 508 3.585990 CCTTGCGCATAAGGCCGG 61.586 66.667 12.75 0.00 40.67 6.13
495 509 2.824041 CTTGCGCATAAGGCCGGT 60.824 61.111 12.75 0.00 40.31 5.28
496 510 2.360600 TTGCGCATAAGGCCGGTT 60.361 55.556 12.75 0.00 40.31 4.44
497 511 1.078356 TTGCGCATAAGGCCGGTTA 60.078 52.632 12.75 0.00 40.31 2.85
498 512 0.464735 TTGCGCATAAGGCCGGTTAT 60.465 50.000 12.75 0.00 40.31 1.89
499 513 0.393448 TGCGCATAAGGCCGGTTATA 59.607 50.000 5.66 0.00 40.31 0.98
500 514 1.202663 TGCGCATAAGGCCGGTTATAA 60.203 47.619 5.66 0.00 40.31 0.98
501 515 2.081462 GCGCATAAGGCCGGTTATAAT 58.919 47.619 0.30 0.00 40.31 1.28
502 516 2.159572 GCGCATAAGGCCGGTTATAATG 60.160 50.000 0.30 2.45 40.31 1.90
503 517 2.418628 CGCATAAGGCCGGTTATAATGG 59.581 50.000 1.90 3.05 40.31 3.16
504 518 2.752903 GCATAAGGCCGGTTATAATGGG 59.247 50.000 1.90 5.01 36.11 4.00
505 519 3.560453 GCATAAGGCCGGTTATAATGGGA 60.560 47.826 1.90 0.00 36.11 4.37
506 520 4.658063 CATAAGGCCGGTTATAATGGGAA 58.342 43.478 1.90 0.00 0.00 3.97
507 521 2.951229 AGGCCGGTTATAATGGGAAG 57.049 50.000 1.90 0.00 0.00 3.46
508 522 2.132686 AGGCCGGTTATAATGGGAAGT 58.867 47.619 1.90 0.00 0.00 3.01
509 523 3.320129 AGGCCGGTTATAATGGGAAGTA 58.680 45.455 1.90 0.00 0.00 2.24
510 524 3.914435 AGGCCGGTTATAATGGGAAGTAT 59.086 43.478 1.90 0.00 0.00 2.12
511 525 4.019591 AGGCCGGTTATAATGGGAAGTATC 60.020 45.833 1.90 0.00 0.00 2.24
512 526 4.263156 GGCCGGTTATAATGGGAAGTATCA 60.263 45.833 1.90 0.00 0.00 2.15
513 527 5.497474 GCCGGTTATAATGGGAAGTATCAT 58.503 41.667 1.90 0.00 0.00 2.45
514 528 6.352394 GGCCGGTTATAATGGGAAGTATCATA 60.352 42.308 1.90 0.00 0.00 2.15
515 529 6.537660 GCCGGTTATAATGGGAAGTATCATAC 59.462 42.308 1.90 0.00 0.00 2.39
516 530 7.617225 CCGGTTATAATGGGAAGTATCATACA 58.383 38.462 0.00 0.00 0.00 2.29
517 531 8.265055 CCGGTTATAATGGGAAGTATCATACAT 58.735 37.037 0.00 0.00 0.00 2.29
549 563 8.818860 ACTAGTCTATGATATTACTCTCTCCGT 58.181 37.037 0.00 0.00 0.00 4.69
550 564 9.661563 CTAGTCTATGATATTACTCTCTCCGTT 57.338 37.037 0.00 0.00 0.00 4.44
551 565 8.927675 AGTCTATGATATTACTCTCTCCGTTT 57.072 34.615 0.00 0.00 0.00 3.60
552 566 9.005777 AGTCTATGATATTACTCTCTCCGTTTC 57.994 37.037 0.00 0.00 0.00 2.78
553 567 9.005777 GTCTATGATATTACTCTCTCCGTTTCT 57.994 37.037 0.00 0.00 0.00 2.52
564 578 8.705048 ACTCTCTCCGTTTCTAAATATTTGTC 57.295 34.615 11.05 0.00 0.00 3.18
565 579 8.532819 ACTCTCTCCGTTTCTAAATATTTGTCT 58.467 33.333 11.05 0.00 0.00 3.41
566 580 9.372369 CTCTCTCCGTTTCTAAATATTTGTCTT 57.628 33.333 11.05 0.00 0.00 3.01
567 581 9.720769 TCTCTCCGTTTCTAAATATTTGTCTTT 57.279 29.630 11.05 0.00 0.00 2.52
568 582 9.974750 CTCTCCGTTTCTAAATATTTGTCTTTC 57.025 33.333 11.05 0.00 0.00 2.62
569 583 9.720769 TCTCCGTTTCTAAATATTTGTCTTTCT 57.279 29.630 11.05 0.00 0.00 2.52
570 584 9.760660 CTCCGTTTCTAAATATTTGTCTTTCTG 57.239 33.333 11.05 0.00 0.00 3.02
571 585 9.496873 TCCGTTTCTAAATATTTGTCTTTCTGA 57.503 29.630 11.05 0.00 0.00 3.27
583 597 8.652810 ATTTGTCTTTCTGAAGGTTTCAAATG 57.347 30.769 19.56 0.00 39.58 2.32
584 598 6.147864 TGTCTTTCTGAAGGTTTCAAATGG 57.852 37.500 0.00 0.00 39.58 3.16
585 599 5.656416 TGTCTTTCTGAAGGTTTCAAATGGT 59.344 36.000 0.00 0.00 39.58 3.55
586 600 5.979517 GTCTTTCTGAAGGTTTCAAATGGTG 59.020 40.000 0.00 0.00 39.58 4.17
587 601 5.890985 TCTTTCTGAAGGTTTCAAATGGTGA 59.109 36.000 0.00 0.00 39.58 4.02
588 602 5.514274 TTCTGAAGGTTTCAAATGGTGAC 57.486 39.130 0.00 0.00 39.58 3.67
589 603 4.792068 TCTGAAGGTTTCAAATGGTGACT 58.208 39.130 0.00 0.00 39.58 3.41
590 604 5.935945 TCTGAAGGTTTCAAATGGTGACTA 58.064 37.500 0.00 0.00 39.58 2.59
591 605 5.763204 TCTGAAGGTTTCAAATGGTGACTAC 59.237 40.000 0.00 0.00 39.58 2.73
592 606 5.441500 TGAAGGTTTCAAATGGTGACTACA 58.558 37.500 0.00 0.00 36.59 2.74
593 607 6.068010 TGAAGGTTTCAAATGGTGACTACAT 58.932 36.000 0.00 0.00 36.59 2.29
594 608 7.227873 TGAAGGTTTCAAATGGTGACTACATA 58.772 34.615 0.00 0.00 36.59 2.29
595 609 7.174253 TGAAGGTTTCAAATGGTGACTACATAC 59.826 37.037 0.00 0.00 36.59 2.39
596 610 5.642063 AGGTTTCAAATGGTGACTACATACG 59.358 40.000 0.00 0.00 35.39 3.06
597 611 5.163794 GGTTTCAAATGGTGACTACATACGG 60.164 44.000 0.00 0.00 35.39 4.02
598 612 5.408880 TTCAAATGGTGACTACATACGGA 57.591 39.130 0.00 0.00 35.39 4.69
599 613 5.006153 TCAAATGGTGACTACATACGGAG 57.994 43.478 0.00 0.00 0.00 4.63
600 614 3.454371 AATGGTGACTACATACGGAGC 57.546 47.619 0.00 0.00 0.00 4.70
601 615 1.842052 TGGTGACTACATACGGAGCA 58.158 50.000 0.00 0.00 0.00 4.26
602 616 2.172679 TGGTGACTACATACGGAGCAA 58.827 47.619 0.00 0.00 0.00 3.91
603 617 2.563620 TGGTGACTACATACGGAGCAAA 59.436 45.455 0.00 0.00 0.00 3.68
604 618 3.007074 TGGTGACTACATACGGAGCAAAA 59.993 43.478 0.00 0.00 0.00 2.44
605 619 4.189231 GGTGACTACATACGGAGCAAAAT 58.811 43.478 0.00 0.00 0.00 1.82
606 620 4.034048 GGTGACTACATACGGAGCAAAATG 59.966 45.833 0.00 0.00 0.00 2.32
607 621 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
608 622 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
609 623 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
610 624 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
611 625 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
612 626 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
613 627 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
614 628 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
615 629 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
616 630 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
617 631 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
618 632 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
619 633 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
654 668 9.862149 ATGTCTATATATATCCGTATGTGGTGA 57.138 33.333 0.00 0.00 0.00 4.02
655 669 9.117183 TGTCTATATATATCCGTATGTGGTGAC 57.883 37.037 0.00 0.00 0.00 3.67
656 670 8.566260 GTCTATATATATCCGTATGTGGTGACC 58.434 40.741 0.00 0.00 0.00 4.02
657 671 8.276477 TCTATATATATCCGTATGTGGTGACCA 58.724 37.037 0.00 0.00 0.00 4.02
658 672 7.914427 ATATATATCCGTATGTGGTGACCAT 57.086 36.000 7.94 0.00 35.28 3.55
659 673 4.974645 ATATCCGTATGTGGTGACCATT 57.025 40.909 7.94 0.86 35.28 3.16
660 674 3.644966 ATCCGTATGTGGTGACCATTT 57.355 42.857 7.94 0.45 35.28 2.32
661 675 4.764050 ATCCGTATGTGGTGACCATTTA 57.236 40.909 7.94 0.00 35.28 1.40
662 676 4.554960 TCCGTATGTGGTGACCATTTAA 57.445 40.909 7.94 0.00 35.28 1.52
663 677 4.907809 TCCGTATGTGGTGACCATTTAAA 58.092 39.130 7.94 0.00 35.28 1.52
664 678 5.314529 TCCGTATGTGGTGACCATTTAAAA 58.685 37.500 7.94 0.00 35.28 1.52
665 679 5.946972 TCCGTATGTGGTGACCATTTAAAAT 59.053 36.000 7.94 0.00 35.28 1.82
666 680 7.110810 TCCGTATGTGGTGACCATTTAAAATA 58.889 34.615 7.94 0.00 35.28 1.40
667 681 7.776030 TCCGTATGTGGTGACCATTTAAAATAT 59.224 33.333 7.94 0.00 35.28 1.28
668 682 8.073768 CCGTATGTGGTGACCATTTAAAATATC 58.926 37.037 7.94 0.00 35.28 1.63
669 683 8.836413 CGTATGTGGTGACCATTTAAAATATCT 58.164 33.333 7.94 0.00 35.28 1.98
673 687 9.967451 TGTGGTGACCATTTAAAATATCTAGAA 57.033 29.630 7.94 0.00 35.28 2.10
693 707 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
694 708 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
695 709 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
696 710 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
697 711 6.555463 AGACAAATATTTAGGAACGGAGGA 57.445 37.500 0.00 0.00 0.00 3.71
698 712 6.583562 AGACAAATATTTAGGAACGGAGGAG 58.416 40.000 0.00 0.00 0.00 3.69
699 713 6.156429 AGACAAATATTTAGGAACGGAGGAGT 59.844 38.462 0.00 0.00 0.00 3.85
700 714 7.343833 AGACAAATATTTAGGAACGGAGGAGTA 59.656 37.037 0.00 0.00 0.00 2.59
701 715 8.030913 ACAAATATTTAGGAACGGAGGAGTAT 57.969 34.615 0.00 0.00 0.00 2.12
702 716 9.151177 ACAAATATTTAGGAACGGAGGAGTATA 57.849 33.333 0.00 0.00 0.00 1.47
721 735 9.368416 GGAGTATATCCCTAATGCATAGTATCA 57.632 37.037 0.00 0.00 43.01 2.15
728 742 9.896645 ATCCCTAATGCATAGTATCATAAGTTG 57.103 33.333 0.00 0.00 0.00 3.16
729 743 8.321353 TCCCTAATGCATAGTATCATAAGTTGG 58.679 37.037 0.00 0.00 0.00 3.77
730 744 8.103305 CCCTAATGCATAGTATCATAAGTTGGT 58.897 37.037 0.00 0.00 0.00 3.67
760 774 6.809869 AGGAGACTAAATTTTATTGCCATGC 58.190 36.000 0.00 0.00 40.61 4.06
761 775 6.380846 AGGAGACTAAATTTTATTGCCATGCA 59.619 34.615 0.00 0.00 40.61 3.96
762 776 7.070322 AGGAGACTAAATTTTATTGCCATGCAT 59.930 33.333 0.00 0.00 40.61 3.96
763 777 7.170320 GGAGACTAAATTTTATTGCCATGCATG 59.830 37.037 20.19 20.19 38.76 4.06
764 778 7.784037 AGACTAAATTTTATTGCCATGCATGA 58.216 30.769 28.31 8.76 38.76 3.07
765 779 8.426489 AGACTAAATTTTATTGCCATGCATGAT 58.574 29.630 28.31 15.63 38.76 2.45
766 780 9.695526 GACTAAATTTTATTGCCATGCATGATA 57.304 29.630 28.31 14.60 38.76 2.15
775 789 9.806203 TTATTGCCATGCATGATATAAAATAGC 57.194 29.630 28.31 17.58 38.76 2.97
776 790 6.837471 TGCCATGCATGATATAAAATAGCA 57.163 33.333 28.31 19.86 31.71 3.49
777 791 7.412853 TGCCATGCATGATATAAAATAGCAT 57.587 32.000 28.31 0.00 41.42 3.79
778 792 8.522542 TGCCATGCATGATATAAAATAGCATA 57.477 30.769 28.31 1.15 39.00 3.14
779 793 9.138596 TGCCATGCATGATATAAAATAGCATAT 57.861 29.630 28.31 0.00 39.00 1.78
780 794 9.622004 GCCATGCATGATATAAAATAGCATATC 57.378 33.333 28.31 0.00 39.00 1.63
814 828 8.139521 TGATACGGTATCATGATACGATACTC 57.860 38.462 30.32 23.33 43.13 2.59
815 829 7.767198 TGATACGGTATCATGATACGATACTCA 59.233 37.037 30.32 24.93 43.13 3.41
816 830 6.812879 ACGGTATCATGATACGATACTCAA 57.187 37.500 30.32 2.00 43.13 3.02
817 831 6.843208 ACGGTATCATGATACGATACTCAAG 58.157 40.000 30.32 17.91 43.13 3.02
818 832 5.739630 CGGTATCATGATACGATACTCAAGC 59.260 44.000 30.32 16.43 43.13 4.01
819 833 6.037098 GGTATCATGATACGATACTCAAGCC 58.963 44.000 30.32 14.64 43.13 4.35
820 834 5.991933 ATCATGATACGATACTCAAGCCT 57.008 39.130 6.36 0.00 0.00 4.58
821 835 5.378292 TCATGATACGATACTCAAGCCTC 57.622 43.478 0.00 0.00 0.00 4.70
822 836 5.073428 TCATGATACGATACTCAAGCCTCT 58.927 41.667 0.00 0.00 0.00 3.69
823 837 5.182190 TCATGATACGATACTCAAGCCTCTC 59.818 44.000 0.00 0.00 0.00 3.20
824 838 4.720046 TGATACGATACTCAAGCCTCTCT 58.280 43.478 0.00 0.00 0.00 3.10
825 839 5.133941 TGATACGATACTCAAGCCTCTCTT 58.866 41.667 0.00 0.00 34.78 2.85
826 840 5.594725 TGATACGATACTCAAGCCTCTCTTT 59.405 40.000 0.00 0.00 31.27 2.52
827 841 4.379339 ACGATACTCAAGCCTCTCTTTC 57.621 45.455 0.00 0.00 31.27 2.62
828 842 4.020543 ACGATACTCAAGCCTCTCTTTCT 58.979 43.478 0.00 0.00 31.27 2.52
829 843 4.464597 ACGATACTCAAGCCTCTCTTTCTT 59.535 41.667 0.00 0.00 31.27 2.52
830 844 5.046950 ACGATACTCAAGCCTCTCTTTCTTT 60.047 40.000 0.00 0.00 31.27 2.52
831 845 6.153000 ACGATACTCAAGCCTCTCTTTCTTTA 59.847 38.462 0.00 0.00 31.27 1.85
832 846 7.147811 ACGATACTCAAGCCTCTCTTTCTTTAT 60.148 37.037 0.00 0.00 31.27 1.40
833 847 7.708752 CGATACTCAAGCCTCTCTTTCTTTATT 59.291 37.037 0.00 0.00 31.27 1.40
834 848 9.389755 GATACTCAAGCCTCTCTTTCTTTATTT 57.610 33.333 0.00 0.00 31.27 1.40
837 851 9.746457 ACTCAAGCCTCTCTTTCTTTATTTAAT 57.254 29.630 0.00 0.00 31.27 1.40
854 868 9.967451 TTTATTTAATTCTATGTCACCTCACCA 57.033 29.630 0.00 0.00 0.00 4.17
855 869 9.967451 TTATTTAATTCTATGTCACCTCACCAA 57.033 29.630 0.00 0.00 0.00 3.67
856 870 8.877864 ATTTAATTCTATGTCACCTCACCAAA 57.122 30.769 0.00 0.00 0.00 3.28
857 871 7.681939 TTAATTCTATGTCACCTCACCAAAC 57.318 36.000 0.00 0.00 0.00 2.93
858 872 4.974645 TTCTATGTCACCTCACCAAACT 57.025 40.909 0.00 0.00 0.00 2.66
859 873 4.974645 TCTATGTCACCTCACCAAACTT 57.025 40.909 0.00 0.00 0.00 2.66
860 874 4.641396 TCTATGTCACCTCACCAAACTTG 58.359 43.478 0.00 0.00 0.00 3.16
861 875 1.388547 TGTCACCTCACCAAACTTGC 58.611 50.000 0.00 0.00 0.00 4.01
862 876 1.064758 TGTCACCTCACCAAACTTGCT 60.065 47.619 0.00 0.00 0.00 3.91
863 877 2.024414 GTCACCTCACCAAACTTGCTT 58.976 47.619 0.00 0.00 0.00 3.91
864 878 3.211045 GTCACCTCACCAAACTTGCTTA 58.789 45.455 0.00 0.00 0.00 3.09
865 879 3.251004 GTCACCTCACCAAACTTGCTTAG 59.749 47.826 0.00 0.00 0.00 2.18
866 880 3.118038 TCACCTCACCAAACTTGCTTAGT 60.118 43.478 0.00 0.00 39.32 2.24
868 882 3.632145 ACCTCACCAAACTTGCTTAGTTG 59.368 43.478 5.71 0.00 46.34 3.16
869 883 3.004734 CCTCACCAAACTTGCTTAGTTGG 59.995 47.826 5.71 6.85 46.34 3.77
870 884 2.360801 TCACCAAACTTGCTTAGTTGGC 59.639 45.455 5.71 0.00 46.34 4.52
871 885 2.100584 CACCAAACTTGCTTAGTTGGCA 59.899 45.455 5.71 0.00 46.34 4.92
872 886 2.965147 ACCAAACTTGCTTAGTTGGCAT 59.035 40.909 5.71 0.00 46.34 4.40
873 887 3.243839 ACCAAACTTGCTTAGTTGGCATG 60.244 43.478 5.71 0.00 46.34 4.06
874 888 2.730550 AACTTGCTTAGTTGGCATGC 57.269 45.000 9.90 9.90 45.33 4.06
875 889 1.619654 ACTTGCTTAGTTGGCATGCA 58.380 45.000 21.36 2.54 39.54 3.96
876 890 2.173519 ACTTGCTTAGTTGGCATGCAT 58.826 42.857 21.36 4.57 39.54 3.96
877 891 2.094390 ACTTGCTTAGTTGGCATGCATG 60.094 45.455 22.70 22.70 39.54 4.06
878 892 1.836802 TGCTTAGTTGGCATGCATGA 58.163 45.000 30.64 7.50 34.56 3.07
879 893 2.380941 TGCTTAGTTGGCATGCATGAT 58.619 42.857 30.64 11.73 34.56 2.45
880 894 3.553904 TGCTTAGTTGGCATGCATGATA 58.446 40.909 30.64 14.66 34.56 2.15
881 895 3.316029 TGCTTAGTTGGCATGCATGATAC 59.684 43.478 30.64 21.28 34.56 2.24
882 896 3.567164 GCTTAGTTGGCATGCATGATACT 59.433 43.478 30.64 26.11 0.00 2.12
883 897 4.037208 GCTTAGTTGGCATGCATGATACTT 59.963 41.667 30.64 13.75 0.00 2.24
884 898 5.239306 GCTTAGTTGGCATGCATGATACTTA 59.761 40.000 30.64 18.99 0.00 2.24
885 899 6.072286 GCTTAGTTGGCATGCATGATACTTAT 60.072 38.462 30.64 11.05 0.00 1.73
886 900 5.700722 AGTTGGCATGCATGATACTTATG 57.299 39.130 30.64 1.88 0.00 1.90
887 901 4.521639 AGTTGGCATGCATGATACTTATGG 59.478 41.667 30.64 0.00 0.00 2.74
888 902 3.423749 TGGCATGCATGATACTTATGGG 58.576 45.455 30.64 0.00 0.00 4.00
889 903 2.165030 GGCATGCATGATACTTATGGGC 59.835 50.000 30.64 9.71 0.00 5.36
890 904 2.821378 GCATGCATGATACTTATGGGCA 59.179 45.455 30.64 0.00 0.00 5.36
891 905 3.119602 GCATGCATGATACTTATGGGCAG 60.120 47.826 30.64 0.00 32.84 4.85
892 906 2.507484 TGCATGATACTTATGGGCAGC 58.493 47.619 0.00 0.00 0.00 5.25
893 907 1.815003 GCATGATACTTATGGGCAGCC 59.185 52.381 1.26 1.26 0.00 4.85
894 908 2.553904 GCATGATACTTATGGGCAGCCT 60.554 50.000 12.43 0.00 0.00 4.58
895 909 3.307691 GCATGATACTTATGGGCAGCCTA 60.308 47.826 12.43 5.38 0.00 3.93
896 910 4.807303 GCATGATACTTATGGGCAGCCTAA 60.807 45.833 12.43 1.90 0.00 2.69
897 911 5.503927 CATGATACTTATGGGCAGCCTAAT 58.496 41.667 12.43 8.38 0.00 1.73
898 912 6.653020 CATGATACTTATGGGCAGCCTAATA 58.347 40.000 12.43 7.32 0.00 0.98
899 913 6.696042 TGATACTTATGGGCAGCCTAATAA 57.304 37.500 12.43 14.34 0.00 1.40
900 914 7.085476 TGATACTTATGGGCAGCCTAATAAA 57.915 36.000 12.43 0.90 0.00 1.40
901 915 7.522542 TGATACTTATGGGCAGCCTAATAAAA 58.477 34.615 12.43 7.72 0.00 1.52
902 916 7.447238 TGATACTTATGGGCAGCCTAATAAAAC 59.553 37.037 12.43 8.06 0.00 2.43
903 917 5.766590 ACTTATGGGCAGCCTAATAAAACT 58.233 37.500 12.43 0.00 0.00 2.66
953 971 4.830912 GCTTAACATCGAAGCAATCTCAG 58.169 43.478 1.19 0.00 46.97 3.35
954 972 4.568359 GCTTAACATCGAAGCAATCTCAGA 59.432 41.667 1.19 0.00 46.97 3.27
956 974 6.402550 GCTTAACATCGAAGCAATCTCAGAAA 60.403 38.462 1.19 0.00 46.97 2.52
957 975 5.542616 AACATCGAAGCAATCTCAGAAAG 57.457 39.130 0.00 0.00 0.00 2.62
958 976 3.937706 ACATCGAAGCAATCTCAGAAAGG 59.062 43.478 0.00 0.00 0.00 3.11
1281 1306 4.382320 TTCGGGTGCTACACGGCC 62.382 66.667 10.33 0.00 46.67 6.13
1341 1366 3.279875 GCGATTCACCGGGCCATC 61.280 66.667 6.32 2.43 0.00 3.51
1532 1557 3.864983 TTGAAGGCGGGGAGGAGGT 62.865 63.158 0.00 0.00 0.00 3.85
1562 1587 1.000486 CGGTGGAGGAGGAGGAAGA 60.000 63.158 0.00 0.00 0.00 2.87
1563 1588 0.614979 CGGTGGAGGAGGAGGAAGAA 60.615 60.000 0.00 0.00 0.00 2.52
1575 1600 3.733960 GAAGAAACCACCGCGGCC 61.734 66.667 28.58 7.62 39.03 6.13
1748 1773 1.603455 CGGTTGGTGGGCTTGATGT 60.603 57.895 0.00 0.00 0.00 3.06
1772 1797 4.611367 TCTGTTGGGGTTTTAGGTTTGAA 58.389 39.130 0.00 0.00 0.00 2.69
1773 1798 5.024118 TCTGTTGGGGTTTTAGGTTTGAAA 58.976 37.500 0.00 0.00 0.00 2.69
1845 1878 7.538303 TGTATGTTACACTAGCACAATGATG 57.462 36.000 0.00 0.00 32.89 3.07
1846 1879 7.327214 TGTATGTTACACTAGCACAATGATGA 58.673 34.615 0.00 0.00 32.89 2.92
1847 1880 7.986889 TGTATGTTACACTAGCACAATGATGAT 59.013 33.333 0.00 0.00 32.89 2.45
1878 1911 2.094752 GGTGTGGTGGTCATGTATTTGC 60.095 50.000 0.00 0.00 0.00 3.68
1879 1912 2.094752 GTGTGGTGGTCATGTATTTGCC 60.095 50.000 0.00 0.00 0.00 4.52
1898 1931 5.913137 TGCCTCCTTGGTGTAAATATTTG 57.087 39.130 11.05 0.00 38.35 2.32
1900 1933 4.953579 GCCTCCTTGGTGTAAATATTTGGA 59.046 41.667 11.05 6.05 38.35 3.53
1905 1938 7.846066 TCCTTGGTGTAAATATTTGGATTTGG 58.154 34.615 11.05 5.49 31.51 3.28
1906 1939 7.676043 TCCTTGGTGTAAATATTTGGATTTGGA 59.324 33.333 11.05 7.48 31.51 3.53
1910 1943 7.621285 TGGTGTAAATATTTGGATTTGGATGGA 59.379 33.333 11.05 0.00 31.51 3.41
1916 1949 7.787623 ATATTTGGATTTGGATGGATTCTCC 57.212 36.000 0.00 0.00 36.96 3.71
1937 1970 2.227149 CACATGGTTGGTGTCATGAGTG 59.773 50.000 9.84 0.00 42.25 3.51
1944 1977 3.106242 TGGTGTCATGAGTGTGTGTAC 57.894 47.619 0.00 0.00 0.00 2.90
1946 1979 3.070878 TGGTGTCATGAGTGTGTGTACAT 59.929 43.478 0.00 0.00 39.39 2.29
1968 2001 6.702723 ACATATTATGCAAATGGTGTGAATGC 59.297 34.615 3.52 0.00 37.52 3.56
1992 2025 6.773976 CCATTTAATGGTAAGTGGTGTCAT 57.226 37.500 15.39 0.00 45.54 3.06
1993 2026 6.563422 CCATTTAATGGTAAGTGGTGTCATG 58.437 40.000 15.39 0.00 45.54 3.07
1994 2027 6.405731 CCATTTAATGGTAAGTGGTGTCATGG 60.406 42.308 15.39 0.00 45.54 3.66
1995 2028 3.806949 AATGGTAAGTGGTGTCATGGT 57.193 42.857 0.00 0.00 0.00 3.55
1996 2029 3.806949 ATGGTAAGTGGTGTCATGGTT 57.193 42.857 0.00 0.00 0.00 3.67
2110 2296 2.550606 TCCTACGTTGTGTGCAAATTCC 59.449 45.455 0.00 0.00 36.22 3.01
2111 2297 2.570169 CTACGTTGTGTGCAAATTCCG 58.430 47.619 0.00 0.00 36.22 4.30
2211 2397 2.961510 CCATGGGGAAAATGCAGGATA 58.038 47.619 2.85 0.00 35.59 2.59
2212 2398 3.307506 CCATGGGGAAAATGCAGGATAA 58.692 45.455 2.85 0.00 35.59 1.75
2240 2426 4.247814 AGGGGAATAGGTGTATGCCATAA 58.752 43.478 0.00 0.00 36.09 1.90
2241 2427 4.042934 AGGGGAATAGGTGTATGCCATAAC 59.957 45.833 0.00 0.00 36.09 1.89
2286 2473 6.729690 TTTTCATGAGGTTGAACTCCAATT 57.270 33.333 0.00 0.00 35.42 2.32
2289 2476 8.421249 TTTCATGAGGTTGAACTCCAATTAAT 57.579 30.769 0.00 0.00 35.42 1.40
2323 2510 0.176219 TGCATGCAAAATAGGCCAGC 59.824 50.000 20.30 0.00 0.00 4.85
2395 2582 3.898482 ACCAAATGAGCCTTGTATACCC 58.102 45.455 0.00 0.00 0.00 3.69
2416 2603 6.143915 ACCCAGACAGAAGGTATACATATGT 58.856 40.000 13.93 13.93 30.13 2.29
2588 2775 2.656947 TATGCATAAGACTTGGGCCC 57.343 50.000 17.59 17.59 0.00 5.80
2595 2782 0.119358 AAGACTTGGGCCCTCTAGGT 59.881 55.000 25.70 9.56 38.26 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 9.779951 ACCTTAATCCTTTACTCTTTCCTACTA 57.220 33.333 0.00 0.00 0.00 1.82
19 20 8.541234 CACCTTAATCCTTTACTCTTTCCTACT 58.459 37.037 0.00 0.00 0.00 2.57
20 21 7.769507 CCACCTTAATCCTTTACTCTTTCCTAC 59.230 40.741 0.00 0.00 0.00 3.18
21 22 7.582828 GCCACCTTAATCCTTTACTCTTTCCTA 60.583 40.741 0.00 0.00 0.00 2.94
22 23 6.722328 CCACCTTAATCCTTTACTCTTTCCT 58.278 40.000 0.00 0.00 0.00 3.36
23 24 5.357314 GCCACCTTAATCCTTTACTCTTTCC 59.643 44.000 0.00 0.00 0.00 3.13
24 25 6.181190 AGCCACCTTAATCCTTTACTCTTTC 58.819 40.000 0.00 0.00 0.00 2.62
25 26 6.140968 AGCCACCTTAATCCTTTACTCTTT 57.859 37.500 0.00 0.00 0.00 2.52
26 27 5.780958 AGCCACCTTAATCCTTTACTCTT 57.219 39.130 0.00 0.00 0.00 2.85
27 28 5.014228 ACAAGCCACCTTAATCCTTTACTCT 59.986 40.000 0.00 0.00 0.00 3.24
28 29 5.254115 ACAAGCCACCTTAATCCTTTACTC 58.746 41.667 0.00 0.00 0.00 2.59
29 30 5.254115 GACAAGCCACCTTAATCCTTTACT 58.746 41.667 0.00 0.00 0.00 2.24
30 31 4.398358 GGACAAGCCACCTTAATCCTTTAC 59.602 45.833 0.00 0.00 34.73 2.01
31 32 4.043561 TGGACAAGCCACCTTAATCCTTTA 59.956 41.667 0.00 0.00 43.33 1.85
32 33 3.181423 TGGACAAGCCACCTTAATCCTTT 60.181 43.478 0.00 0.00 43.33 3.11
33 34 2.378547 TGGACAAGCCACCTTAATCCTT 59.621 45.455 0.00 0.00 43.33 3.36
34 35 1.992557 TGGACAAGCCACCTTAATCCT 59.007 47.619 0.00 0.00 43.33 3.24
35 36 2.507407 TGGACAAGCCACCTTAATCC 57.493 50.000 0.00 0.00 43.33 3.01
44 45 1.425066 AGGATCAAAGTGGACAAGCCA 59.575 47.619 0.00 0.00 46.96 4.75
45 46 2.206576 AGGATCAAAGTGGACAAGCC 57.793 50.000 0.00 0.00 37.10 4.35
46 47 5.705609 TTTAAGGATCAAAGTGGACAAGC 57.294 39.130 0.00 0.00 0.00 4.01
79 80 9.621629 TCTGTACTGATGTTAAAGAAAAGGAAA 57.378 29.630 0.00 0.00 0.00 3.13
80 81 9.052759 GTCTGTACTGATGTTAAAGAAAAGGAA 57.947 33.333 5.69 0.00 0.00 3.36
81 82 8.208224 TGTCTGTACTGATGTTAAAGAAAAGGA 58.792 33.333 5.69 0.00 0.00 3.36
82 83 8.378172 TGTCTGTACTGATGTTAAAGAAAAGG 57.622 34.615 5.69 0.00 0.00 3.11
86 87 9.151471 GCTTATGTCTGTACTGATGTTAAAGAA 57.849 33.333 5.69 0.00 0.00 2.52
87 88 7.488150 CGCTTATGTCTGTACTGATGTTAAAGA 59.512 37.037 5.69 0.00 0.00 2.52
88 89 7.613146 CGCTTATGTCTGTACTGATGTTAAAG 58.387 38.462 5.69 7.15 0.00 1.85
89 90 6.035650 GCGCTTATGTCTGTACTGATGTTAAA 59.964 38.462 0.00 0.00 0.00 1.52
90 91 5.518847 GCGCTTATGTCTGTACTGATGTTAA 59.481 40.000 0.00 4.41 0.00 2.01
91 92 5.041287 GCGCTTATGTCTGTACTGATGTTA 58.959 41.667 0.00 0.00 0.00 2.41
92 93 3.865745 GCGCTTATGTCTGTACTGATGTT 59.134 43.478 0.00 0.00 0.00 2.71
93 94 3.131223 AGCGCTTATGTCTGTACTGATGT 59.869 43.478 2.64 1.12 0.00 3.06
94 95 3.711086 AGCGCTTATGTCTGTACTGATG 58.289 45.455 2.64 0.00 0.00 3.07
95 96 3.381590 TGAGCGCTTATGTCTGTACTGAT 59.618 43.478 13.26 0.00 0.00 2.90
96 97 2.752903 TGAGCGCTTATGTCTGTACTGA 59.247 45.455 13.26 0.00 0.00 3.41
97 98 3.150848 TGAGCGCTTATGTCTGTACTG 57.849 47.619 13.26 0.00 0.00 2.74
98 99 5.713792 ATATGAGCGCTTATGTCTGTACT 57.286 39.130 23.64 0.00 0.00 2.73
99 100 6.305877 GTGTATATGAGCGCTTATGTCTGTAC 59.694 42.308 23.64 16.58 0.00 2.90
100 101 6.379386 GTGTATATGAGCGCTTATGTCTGTA 58.621 40.000 23.64 3.74 0.00 2.74
101 102 5.223382 GTGTATATGAGCGCTTATGTCTGT 58.777 41.667 23.64 7.75 0.00 3.41
102 103 4.322009 CGTGTATATGAGCGCTTATGTCTG 59.678 45.833 23.64 5.88 0.00 3.51
103 104 4.476862 CGTGTATATGAGCGCTTATGTCT 58.523 43.478 23.64 11.09 0.00 3.41
104 105 3.059570 GCGTGTATATGAGCGCTTATGTC 59.940 47.826 23.64 13.69 45.48 3.06
105 106 2.987149 GCGTGTATATGAGCGCTTATGT 59.013 45.455 23.64 19.44 45.48 2.29
106 107 2.026860 CGCGTGTATATGAGCGCTTATG 59.973 50.000 23.64 7.66 46.56 1.90
107 108 2.251040 CGCGTGTATATGAGCGCTTAT 58.749 47.619 19.33 19.33 46.56 1.73
108 109 1.681825 CGCGTGTATATGAGCGCTTA 58.318 50.000 13.26 8.30 46.56 3.09
109 110 2.506544 CGCGTGTATATGAGCGCTT 58.493 52.632 13.26 0.00 46.56 4.68
110 111 4.228451 CGCGTGTATATGAGCGCT 57.772 55.556 11.27 11.27 46.56 5.92
113 114 2.090658 GTGTATGCGCGTGTATATGAGC 59.909 50.000 13.61 0.41 38.85 4.26
114 115 3.565516 AGTGTATGCGCGTGTATATGAG 58.434 45.455 13.61 0.00 0.00 2.90
115 116 3.636282 AGTGTATGCGCGTGTATATGA 57.364 42.857 13.61 0.00 0.00 2.15
116 117 5.092781 TCATAGTGTATGCGCGTGTATATG 58.907 41.667 13.61 14.30 36.14 1.78
117 118 5.305139 TCATAGTGTATGCGCGTGTATAT 57.695 39.130 13.61 2.69 36.14 0.86
118 119 4.752661 TCATAGTGTATGCGCGTGTATA 57.247 40.909 13.61 2.40 36.14 1.47
119 120 3.636282 TCATAGTGTATGCGCGTGTAT 57.364 42.857 13.61 4.63 36.14 2.29
120 121 3.110358 GTTCATAGTGTATGCGCGTGTA 58.890 45.455 13.61 0.00 36.14 2.90
121 122 1.924524 GTTCATAGTGTATGCGCGTGT 59.075 47.619 13.61 0.00 36.14 4.49
122 123 1.072154 CGTTCATAGTGTATGCGCGTG 60.072 52.381 13.61 0.00 36.14 5.34
123 124 1.197055 CGTTCATAGTGTATGCGCGT 58.803 50.000 8.43 7.55 36.14 6.01
124 125 0.111704 GCGTTCATAGTGTATGCGCG 60.112 55.000 0.00 0.00 37.70 6.86
125 126 0.927537 TGCGTTCATAGTGTATGCGC 59.072 50.000 0.00 0.00 43.32 6.09
126 127 1.923864 TGTGCGTTCATAGTGTATGCG 59.076 47.619 0.00 0.00 33.16 4.73
127 128 2.670905 TGTGTGCGTTCATAGTGTATGC 59.329 45.455 0.00 0.00 36.14 3.14
128 129 3.677596 TGTGTGTGCGTTCATAGTGTATG 59.322 43.478 0.00 0.00 37.52 2.39
129 130 3.678072 GTGTGTGTGCGTTCATAGTGTAT 59.322 43.478 0.00 0.00 0.00 2.29
130 131 3.054166 GTGTGTGTGCGTTCATAGTGTA 58.946 45.455 0.00 0.00 0.00 2.90
131 132 1.864711 GTGTGTGTGCGTTCATAGTGT 59.135 47.619 0.00 0.00 0.00 3.55
132 133 1.864082 TGTGTGTGTGCGTTCATAGTG 59.136 47.619 0.00 0.00 0.00 2.74
133 134 1.864711 GTGTGTGTGTGCGTTCATAGT 59.135 47.619 0.00 0.00 0.00 2.12
134 135 1.864082 TGTGTGTGTGTGCGTTCATAG 59.136 47.619 0.00 0.00 0.00 2.23
135 136 1.595328 GTGTGTGTGTGTGCGTTCATA 59.405 47.619 0.00 0.00 0.00 2.15
136 137 0.376852 GTGTGTGTGTGTGCGTTCAT 59.623 50.000 0.00 0.00 0.00 2.57
137 138 1.640210 GGTGTGTGTGTGTGCGTTCA 61.640 55.000 0.00 0.00 0.00 3.18
138 139 1.061887 GGTGTGTGTGTGTGCGTTC 59.938 57.895 0.00 0.00 0.00 3.95
139 140 2.403378 GGGTGTGTGTGTGTGCGTT 61.403 57.895 0.00 0.00 0.00 4.84
140 141 1.962321 TAGGGTGTGTGTGTGTGCGT 61.962 55.000 0.00 0.00 0.00 5.24
141 142 1.227409 TAGGGTGTGTGTGTGTGCG 60.227 57.895 0.00 0.00 0.00 5.34
142 143 1.164041 GGTAGGGTGTGTGTGTGTGC 61.164 60.000 0.00 0.00 0.00 4.57
143 144 0.468226 AGGTAGGGTGTGTGTGTGTG 59.532 55.000 0.00 0.00 0.00 3.82
144 145 0.756903 GAGGTAGGGTGTGTGTGTGT 59.243 55.000 0.00 0.00 0.00 3.72
145 146 1.048601 AGAGGTAGGGTGTGTGTGTG 58.951 55.000 0.00 0.00 0.00 3.82
146 147 2.688902 TAGAGGTAGGGTGTGTGTGT 57.311 50.000 0.00 0.00 0.00 3.72
147 148 3.096852 TCATAGAGGTAGGGTGTGTGTG 58.903 50.000 0.00 0.00 0.00 3.82
148 149 3.366396 CTCATAGAGGTAGGGTGTGTGT 58.634 50.000 0.00 0.00 0.00 3.72
149 150 2.101582 GCTCATAGAGGTAGGGTGTGTG 59.898 54.545 0.00 0.00 0.00 3.82
150 151 2.292257 TGCTCATAGAGGTAGGGTGTGT 60.292 50.000 0.00 0.00 0.00 3.72
151 152 2.101582 GTGCTCATAGAGGTAGGGTGTG 59.898 54.545 0.00 0.00 0.00 3.82
152 153 2.389715 GTGCTCATAGAGGTAGGGTGT 58.610 52.381 0.00 0.00 0.00 4.16
153 154 1.689273 GGTGCTCATAGAGGTAGGGTG 59.311 57.143 0.00 0.00 0.00 4.61
154 155 1.576272 AGGTGCTCATAGAGGTAGGGT 59.424 52.381 0.00 0.00 0.00 4.34
155 156 2.243810 GAGGTGCTCATAGAGGTAGGG 58.756 57.143 0.00 0.00 0.00 3.53
156 157 2.243810 GGAGGTGCTCATAGAGGTAGG 58.756 57.143 0.00 0.00 31.08 3.18
157 158 1.883275 CGGAGGTGCTCATAGAGGTAG 59.117 57.143 0.00 0.00 31.08 3.18
158 159 1.493446 TCGGAGGTGCTCATAGAGGTA 59.507 52.381 0.00 0.00 31.08 3.08
159 160 0.259065 TCGGAGGTGCTCATAGAGGT 59.741 55.000 0.00 0.00 31.08 3.85
160 161 1.403814 TTCGGAGGTGCTCATAGAGG 58.596 55.000 0.00 0.00 31.08 3.69
161 162 2.690497 TCTTTCGGAGGTGCTCATAGAG 59.310 50.000 0.00 0.00 31.08 2.43
162 163 2.427453 GTCTTTCGGAGGTGCTCATAGA 59.573 50.000 0.00 0.00 31.08 1.98
163 164 2.428890 AGTCTTTCGGAGGTGCTCATAG 59.571 50.000 0.00 0.00 31.08 2.23
164 165 2.166459 CAGTCTTTCGGAGGTGCTCATA 59.834 50.000 0.00 0.00 31.08 2.15
165 166 1.066573 CAGTCTTTCGGAGGTGCTCAT 60.067 52.381 0.00 0.00 31.08 2.90
166 167 0.318441 CAGTCTTTCGGAGGTGCTCA 59.682 55.000 0.00 0.00 31.08 4.26
167 168 0.603569 TCAGTCTTTCGGAGGTGCTC 59.396 55.000 0.00 0.00 0.00 4.26
168 169 0.605589 CTCAGTCTTTCGGAGGTGCT 59.394 55.000 0.00 0.00 35.32 4.40
169 170 1.016653 GCTCAGTCTTTCGGAGGTGC 61.017 60.000 0.00 0.00 38.48 5.01
170 171 0.390472 GGCTCAGTCTTTCGGAGGTG 60.390 60.000 0.00 0.00 38.48 4.00
171 172 1.878656 CGGCTCAGTCTTTCGGAGGT 61.879 60.000 0.00 0.00 38.48 3.85
172 173 1.153745 CGGCTCAGTCTTTCGGAGG 60.154 63.158 0.00 0.00 38.48 4.30
173 174 1.153745 CCGGCTCAGTCTTTCGGAG 60.154 63.158 0.00 0.00 42.94 4.63
174 175 2.970639 CCGGCTCAGTCTTTCGGA 59.029 61.111 0.00 0.00 42.94 4.55
175 176 2.815647 GCCGGCTCAGTCTTTCGG 60.816 66.667 22.15 0.00 43.13 4.30
176 177 0.179111 TATGCCGGCTCAGTCTTTCG 60.179 55.000 29.70 0.00 0.00 3.46
177 178 2.139118 GATATGCCGGCTCAGTCTTTC 58.861 52.381 29.70 9.22 0.00 2.62
178 179 1.486310 TGATATGCCGGCTCAGTCTTT 59.514 47.619 29.70 3.35 0.00 2.52
179 180 1.123077 TGATATGCCGGCTCAGTCTT 58.877 50.000 29.70 5.10 0.00 3.01
180 181 1.274728 GATGATATGCCGGCTCAGTCT 59.725 52.381 29.70 8.26 0.00 3.24
181 182 1.274728 AGATGATATGCCGGCTCAGTC 59.725 52.381 29.70 19.55 0.00 3.51
182 183 1.346062 AGATGATATGCCGGCTCAGT 58.654 50.000 29.70 13.44 0.00 3.41
183 184 2.469274 AAGATGATATGCCGGCTCAG 57.531 50.000 29.70 0.00 0.00 3.35
184 185 2.936919 AAAGATGATATGCCGGCTCA 57.063 45.000 29.70 23.34 0.00 4.26
185 186 5.886960 ATTTAAAGATGATATGCCGGCTC 57.113 39.130 29.70 17.89 0.00 4.70
186 187 6.655078 AAATTTAAAGATGATATGCCGGCT 57.345 33.333 29.70 15.76 0.00 5.52
187 188 7.367285 TGTAAATTTAAAGATGATATGCCGGC 58.633 34.615 22.73 22.73 0.00 6.13
188 189 9.743057 TTTGTAAATTTAAAGATGATATGCCGG 57.257 29.630 0.00 0.00 0.00 6.13
200 201 8.856247 GCCTACGGTGATTTTGTAAATTTAAAG 58.144 33.333 0.00 0.00 0.00 1.85
201 202 7.537991 CGCCTACGGTGATTTTGTAAATTTAAA 59.462 33.333 0.00 0.00 34.74 1.52
202 203 7.022384 CGCCTACGGTGATTTTGTAAATTTAA 58.978 34.615 0.00 0.00 34.74 1.52
203 204 6.544622 CGCCTACGGTGATTTTGTAAATTTA 58.455 36.000 0.00 0.00 34.74 1.40
204 205 5.395642 CGCCTACGGTGATTTTGTAAATTT 58.604 37.500 0.00 0.00 34.74 1.82
205 206 4.673320 GCGCCTACGGTGATTTTGTAAATT 60.673 41.667 0.00 0.00 40.57 1.82
206 207 3.181504 GCGCCTACGGTGATTTTGTAAAT 60.182 43.478 0.00 0.00 40.57 1.40
207 208 2.160022 GCGCCTACGGTGATTTTGTAAA 59.840 45.455 0.00 0.00 40.57 2.01
208 209 1.733360 GCGCCTACGGTGATTTTGTAA 59.267 47.619 0.00 0.00 40.57 2.41
209 210 1.361793 GCGCCTACGGTGATTTTGTA 58.638 50.000 0.00 0.00 40.57 2.41
210 211 1.303091 GGCGCCTACGGTGATTTTGT 61.303 55.000 22.15 0.00 40.57 2.83
211 212 1.024579 AGGCGCCTACGGTGATTTTG 61.025 55.000 31.86 0.00 40.57 2.44
212 213 0.538118 TAGGCGCCTACGGTGATTTT 59.462 50.000 32.24 6.88 40.57 1.82
213 214 0.104304 CTAGGCGCCTACGGTGATTT 59.896 55.000 32.24 7.47 40.57 2.17
214 215 1.041447 ACTAGGCGCCTACGGTGATT 61.041 55.000 32.24 8.30 40.57 2.57
215 216 1.453762 GACTAGGCGCCTACGGTGAT 61.454 60.000 32.24 13.02 40.57 3.06
216 217 2.044650 ACTAGGCGCCTACGGTGA 60.045 61.111 32.24 13.48 40.57 4.02
217 218 2.412112 GACTAGGCGCCTACGGTG 59.588 66.667 32.24 23.58 40.57 4.94
218 219 2.593468 TACGACTAGGCGCCTACGGT 62.593 60.000 35.45 30.43 40.57 4.83
219 220 1.439353 TTACGACTAGGCGCCTACGG 61.439 60.000 35.45 27.99 40.57 4.02
220 221 0.378257 TTTACGACTAGGCGCCTACG 59.622 55.000 32.88 32.88 44.07 3.51
221 222 2.566952 TTTTACGACTAGGCGCCTAC 57.433 50.000 32.24 21.74 33.86 3.18
222 223 2.689471 TGATTTTACGACTAGGCGCCTA 59.311 45.455 33.24 33.24 33.86 3.93
223 224 1.479323 TGATTTTACGACTAGGCGCCT 59.521 47.619 34.85 34.85 33.86 5.52
224 225 1.930567 TGATTTTACGACTAGGCGCC 58.069 50.000 21.89 21.89 33.86 6.53
225 226 3.303132 CCAATGATTTTACGACTAGGCGC 60.303 47.826 20.33 0.00 33.86 6.53
226 227 4.116961 TCCAATGATTTTACGACTAGGCG 58.883 43.478 18.57 18.57 37.29 5.52
227 228 6.431198 TTTCCAATGATTTTACGACTAGGC 57.569 37.500 0.00 0.00 0.00 3.93
231 232 9.634163 GGTTTTATTTCCAATGATTTTACGACT 57.366 29.630 0.00 0.00 0.00 4.18
232 233 9.413048 TGGTTTTATTTCCAATGATTTTACGAC 57.587 29.630 0.00 0.00 0.00 4.34
233 234 9.982651 TTGGTTTTATTTCCAATGATTTTACGA 57.017 25.926 0.00 0.00 38.57 3.43
282 283 7.931015 TGTTTCATAGGAATGGAGGTACTAT 57.069 36.000 0.00 0.00 32.60 2.12
337 338 3.244665 TGTTGGCTAGGGCTCATATGATG 60.245 47.826 5.72 2.04 38.73 3.07
374 387 1.873591 ACGATTCTGACAAAGCCACAC 59.126 47.619 0.00 0.00 0.00 3.82
375 388 2.143122 GACGATTCTGACAAAGCCACA 58.857 47.619 0.00 0.00 0.00 4.17
384 397 0.876342 GGCGGATGGACGATTCTGAC 60.876 60.000 0.00 0.00 35.47 3.51
443 456 0.035820 TGGATTAGGTGCAACGGGAC 60.036 55.000 0.00 0.00 38.12 4.46
444 457 0.035820 GTGGATTAGGTGCAACGGGA 60.036 55.000 0.00 0.00 38.12 5.14
445 458 1.029947 GGTGGATTAGGTGCAACGGG 61.030 60.000 0.00 0.00 38.12 5.28
448 461 1.173913 GGTGGTGGATTAGGTGCAAC 58.826 55.000 0.00 0.00 36.23 4.17
449 462 0.322098 CGGTGGTGGATTAGGTGCAA 60.322 55.000 0.00 0.00 0.00 4.08
450 463 1.195442 TCGGTGGTGGATTAGGTGCA 61.195 55.000 0.00 0.00 0.00 4.57
464 477 2.982130 CAAGGGAGAGGGTCGGTG 59.018 66.667 0.00 0.00 0.00 4.94
489 503 2.651382 ACTTCCCATTATAACCGGCC 57.349 50.000 0.00 0.00 0.00 6.13
490 504 4.901868 TGATACTTCCCATTATAACCGGC 58.098 43.478 0.00 0.00 0.00 6.13
523 537 8.818860 ACGGAGAGAGTAATATCATAGACTAGT 58.181 37.037 0.00 0.00 0.00 2.57
524 538 9.661563 AACGGAGAGAGTAATATCATAGACTAG 57.338 37.037 0.00 0.00 0.00 2.57
526 540 8.927675 AAACGGAGAGAGTAATATCATAGACT 57.072 34.615 0.00 0.00 0.00 3.24
527 541 9.005777 AGAAACGGAGAGAGTAATATCATAGAC 57.994 37.037 0.00 0.00 0.00 2.59
538 552 9.798994 GACAAATATTTAGAAACGGAGAGAGTA 57.201 33.333 0.00 0.00 0.00 2.59
539 553 8.532819 AGACAAATATTTAGAAACGGAGAGAGT 58.467 33.333 0.00 0.00 0.00 3.24
540 554 8.934507 AGACAAATATTTAGAAACGGAGAGAG 57.065 34.615 0.00 0.00 0.00 3.20
541 555 9.720769 AAAGACAAATATTTAGAAACGGAGAGA 57.279 29.630 0.00 0.00 0.00 3.10
542 556 9.974750 GAAAGACAAATATTTAGAAACGGAGAG 57.025 33.333 0.00 0.00 0.00 3.20
543 557 9.720769 AGAAAGACAAATATTTAGAAACGGAGA 57.279 29.630 0.00 0.00 0.00 3.71
544 558 9.760660 CAGAAAGACAAATATTTAGAAACGGAG 57.239 33.333 0.00 0.00 0.00 4.63
545 559 9.496873 TCAGAAAGACAAATATTTAGAAACGGA 57.503 29.630 0.00 0.00 0.00 4.69
557 571 9.748708 CATTTGAAACCTTCAGAAAGACAAATA 57.251 29.630 0.00 0.00 41.38 1.40
558 572 7.712205 CCATTTGAAACCTTCAGAAAGACAAAT 59.288 33.333 0.00 0.00 41.38 2.32
559 573 7.041107 CCATTTGAAACCTTCAGAAAGACAAA 58.959 34.615 0.00 0.00 41.38 2.83
560 574 6.154363 ACCATTTGAAACCTTCAGAAAGACAA 59.846 34.615 0.00 0.00 41.38 3.18
561 575 5.656416 ACCATTTGAAACCTTCAGAAAGACA 59.344 36.000 0.00 0.00 41.38 3.41
562 576 5.979517 CACCATTTGAAACCTTCAGAAAGAC 59.020 40.000 0.00 0.00 41.38 3.01
563 577 5.890985 TCACCATTTGAAACCTTCAGAAAGA 59.109 36.000 0.00 0.00 41.38 2.52
564 578 5.979517 GTCACCATTTGAAACCTTCAGAAAG 59.020 40.000 0.00 0.00 41.38 2.62
565 579 5.656416 AGTCACCATTTGAAACCTTCAGAAA 59.344 36.000 0.00 0.00 41.38 2.52
566 580 5.200483 AGTCACCATTTGAAACCTTCAGAA 58.800 37.500 0.00 0.00 41.38 3.02
567 581 4.792068 AGTCACCATTTGAAACCTTCAGA 58.208 39.130 0.00 0.00 41.38 3.27
568 582 5.530915 TGTAGTCACCATTTGAAACCTTCAG 59.469 40.000 0.00 0.00 41.38 3.02
569 583 5.441500 TGTAGTCACCATTTGAAACCTTCA 58.558 37.500 0.00 0.00 35.39 3.02
570 584 6.575162 ATGTAGTCACCATTTGAAACCTTC 57.425 37.500 0.00 0.00 35.39 3.46
571 585 6.148811 CGTATGTAGTCACCATTTGAAACCTT 59.851 38.462 0.00 0.00 35.39 3.50
572 586 5.642063 CGTATGTAGTCACCATTTGAAACCT 59.358 40.000 0.00 0.00 35.39 3.50
573 587 5.163794 CCGTATGTAGTCACCATTTGAAACC 60.164 44.000 0.00 0.00 35.39 3.27
574 588 5.640357 TCCGTATGTAGTCACCATTTGAAAC 59.360 40.000 0.00 0.00 35.39 2.78
575 589 5.795972 TCCGTATGTAGTCACCATTTGAAA 58.204 37.500 0.00 0.00 35.39 2.69
576 590 5.408880 TCCGTATGTAGTCACCATTTGAA 57.591 39.130 0.00 0.00 35.39 2.69
577 591 4.679639 GCTCCGTATGTAGTCACCATTTGA 60.680 45.833 0.00 0.00 0.00 2.69
578 592 3.555956 GCTCCGTATGTAGTCACCATTTG 59.444 47.826 0.00 0.00 0.00 2.32
579 593 3.196901 TGCTCCGTATGTAGTCACCATTT 59.803 43.478 0.00 0.00 0.00 2.32
580 594 2.764010 TGCTCCGTATGTAGTCACCATT 59.236 45.455 0.00 0.00 0.00 3.16
581 595 2.384828 TGCTCCGTATGTAGTCACCAT 58.615 47.619 0.00 0.00 0.00 3.55
582 596 1.842052 TGCTCCGTATGTAGTCACCA 58.158 50.000 0.00 0.00 0.00 4.17
583 597 2.953466 TTGCTCCGTATGTAGTCACC 57.047 50.000 0.00 0.00 0.00 4.02
584 598 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
585 599 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
586 600 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
587 601 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
588 602 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
589 603 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
590 604 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
591 605 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
592 606 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
593 607 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
594 608 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
595 609 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
596 610 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
597 611 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
598 612 7.516198 AAAGTGTAGATTCACTCATTTTGCT 57.484 32.000 0.00 0.00 46.25 3.91
599 613 9.677567 TTTAAAGTGTAGATTCACTCATTTTGC 57.322 29.630 0.00 0.00 46.25 3.68
628 642 9.862149 TCACCACATACGGATATATATAGACAT 57.138 33.333 0.00 0.00 0.00 3.06
629 643 9.117183 GTCACCACATACGGATATATATAGACA 57.883 37.037 0.00 0.00 0.00 3.41
630 644 8.566260 GGTCACCACATACGGATATATATAGAC 58.434 40.741 0.00 0.00 0.00 2.59
631 645 8.276477 TGGTCACCACATACGGATATATATAGA 58.724 37.037 0.00 0.00 0.00 1.98
632 646 8.459911 TGGTCACCACATACGGATATATATAG 57.540 38.462 0.00 0.00 0.00 1.31
633 647 9.429109 AATGGTCACCACATACGGATATATATA 57.571 33.333 0.00 0.00 35.80 0.86
634 648 7.914427 ATGGTCACCACATACGGATATATAT 57.086 36.000 0.00 0.00 35.80 0.86
635 649 7.727578 AATGGTCACCACATACGGATATATA 57.272 36.000 0.00 0.00 35.80 0.86
636 650 6.620877 AATGGTCACCACATACGGATATAT 57.379 37.500 0.00 0.00 35.80 0.86
637 651 6.428083 AAATGGTCACCACATACGGATATA 57.572 37.500 0.00 0.00 35.80 0.86
638 652 4.974645 AATGGTCACCACATACGGATAT 57.025 40.909 0.00 0.00 35.80 1.63
639 653 4.764050 AAATGGTCACCACATACGGATA 57.236 40.909 0.00 0.00 35.80 2.59
640 654 3.644966 AAATGGTCACCACATACGGAT 57.355 42.857 0.00 0.00 35.80 4.18
641 655 4.554960 TTAAATGGTCACCACATACGGA 57.445 40.909 0.00 0.00 35.80 4.69
642 656 5.630661 TTTTAAATGGTCACCACATACGG 57.369 39.130 0.00 0.00 35.80 4.02
643 657 8.836413 AGATATTTTAAATGGTCACCACATACG 58.164 33.333 0.00 0.00 35.80 3.06
647 661 9.967451 TTCTAGATATTTTAAATGGTCACCACA 57.033 29.630 0.00 0.00 35.80 4.17
667 681 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
668 682 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
669 683 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
670 684 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
671 685 7.551617 TCCTCCGTTCCTAAATATTTGTCTTTC 59.448 37.037 11.05 0.00 0.00 2.62
672 686 7.399634 TCCTCCGTTCCTAAATATTTGTCTTT 58.600 34.615 11.05 0.00 0.00 2.52
673 687 6.954232 TCCTCCGTTCCTAAATATTTGTCTT 58.046 36.000 11.05 0.00 0.00 3.01
674 688 6.156429 ACTCCTCCGTTCCTAAATATTTGTCT 59.844 38.462 11.05 0.00 0.00 3.41
675 689 6.346896 ACTCCTCCGTTCCTAAATATTTGTC 58.653 40.000 11.05 0.00 0.00 3.18
676 690 6.309389 ACTCCTCCGTTCCTAAATATTTGT 57.691 37.500 11.05 0.00 0.00 2.83
679 693 8.979534 GGATATACTCCTCCGTTCCTAAATATT 58.020 37.037 0.00 0.00 41.29 1.28
680 694 7.564292 GGGATATACTCCTCCGTTCCTAAATAT 59.436 40.741 0.00 0.00 44.28 1.28
681 695 6.894103 GGGATATACTCCTCCGTTCCTAAATA 59.106 42.308 0.00 0.00 44.28 1.40
682 696 5.720520 GGGATATACTCCTCCGTTCCTAAAT 59.279 44.000 0.00 0.00 44.28 1.40
683 697 5.082425 GGGATATACTCCTCCGTTCCTAAA 58.918 45.833 0.00 0.00 44.28 1.85
684 698 4.356190 AGGGATATACTCCTCCGTTCCTAA 59.644 45.833 0.00 0.00 44.28 2.69
685 699 3.921486 AGGGATATACTCCTCCGTTCCTA 59.079 47.826 0.00 0.00 44.28 2.94
686 700 2.723010 AGGGATATACTCCTCCGTTCCT 59.277 50.000 0.00 0.00 44.28 3.36
687 701 3.172471 AGGGATATACTCCTCCGTTCC 57.828 52.381 0.00 0.00 44.28 3.62
688 702 5.394333 GCATTAGGGATATACTCCTCCGTTC 60.394 48.000 0.00 0.00 44.28 3.95
689 703 4.466726 GCATTAGGGATATACTCCTCCGTT 59.533 45.833 0.00 0.00 44.28 4.44
690 704 4.024670 GCATTAGGGATATACTCCTCCGT 58.975 47.826 0.00 0.00 44.28 4.69
691 705 4.023980 TGCATTAGGGATATACTCCTCCG 58.976 47.826 0.00 0.00 44.28 4.63
692 706 6.841755 ACTATGCATTAGGGATATACTCCTCC 59.158 42.308 3.54 0.00 44.28 4.30
693 707 7.906199 ACTATGCATTAGGGATATACTCCTC 57.094 40.000 3.54 0.00 44.28 3.71
694 708 9.594936 GATACTATGCATTAGGGATATACTCCT 57.405 37.037 3.54 1.85 44.28 3.69
695 709 9.368416 TGATACTATGCATTAGGGATATACTCC 57.632 37.037 3.54 0.00 44.11 3.85
702 716 9.896645 CAACTTATGATACTATGCATTAGGGAT 57.103 33.333 3.54 0.00 31.68 3.85
703 717 8.321353 CCAACTTATGATACTATGCATTAGGGA 58.679 37.037 3.54 0.00 31.68 4.20
704 718 8.103305 ACCAACTTATGATACTATGCATTAGGG 58.897 37.037 3.54 0.00 31.68 3.53
734 748 8.579863 GCATGGCAATAAAATTTAGTCTCCTAT 58.420 33.333 0.00 0.00 0.00 2.57
735 749 7.559533 TGCATGGCAATAAAATTTAGTCTCCTA 59.440 33.333 0.00 0.00 34.76 2.94
736 750 6.380846 TGCATGGCAATAAAATTTAGTCTCCT 59.619 34.615 0.00 0.00 34.76 3.69
737 751 6.572519 TGCATGGCAATAAAATTTAGTCTCC 58.427 36.000 0.00 0.00 34.76 3.71
738 752 7.922278 TCATGCATGGCAATAAAATTTAGTCTC 59.078 33.333 25.97 0.00 43.62 3.36
739 753 7.784037 TCATGCATGGCAATAAAATTTAGTCT 58.216 30.769 25.97 0.00 43.62 3.24
740 754 8.597662 ATCATGCATGGCAATAAAATTTAGTC 57.402 30.769 25.97 0.00 43.62 2.59
749 763 9.806203 GCTATTTTATATCATGCATGGCAATAA 57.194 29.630 25.97 20.91 43.62 1.40
750 764 8.968969 TGCTATTTTATATCATGCATGGCAATA 58.031 29.630 25.97 16.44 43.62 1.90
751 765 7.842982 TGCTATTTTATATCATGCATGGCAAT 58.157 30.769 25.97 17.87 43.62 3.56
752 766 7.229581 TGCTATTTTATATCATGCATGGCAA 57.770 32.000 25.97 12.30 43.62 4.52
753 767 6.837471 TGCTATTTTATATCATGCATGGCA 57.163 33.333 25.97 19.00 44.86 4.92
754 768 9.622004 GATATGCTATTTTATATCATGCATGGC 57.378 33.333 25.97 16.76 39.53 4.40
789 803 7.767198 TGAGTATCGTATCATGATACCGTATCA 59.233 37.037 30.97 25.00 44.33 2.15
790 804 8.139521 TGAGTATCGTATCATGATACCGTATC 57.860 38.462 30.97 23.38 44.33 2.24
791 805 8.502105 TTGAGTATCGTATCATGATACCGTAT 57.498 34.615 30.97 24.41 44.33 3.06
792 806 7.413767 GCTTGAGTATCGTATCATGATACCGTA 60.414 40.741 30.97 22.79 44.33 4.02
793 807 6.623114 GCTTGAGTATCGTATCATGATACCGT 60.623 42.308 30.97 23.61 44.33 4.83
794 808 5.739630 GCTTGAGTATCGTATCATGATACCG 59.260 44.000 30.97 25.84 44.33 4.02
795 809 6.037098 GGCTTGAGTATCGTATCATGATACC 58.963 44.000 30.97 20.57 44.33 2.73
796 810 6.857956 AGGCTTGAGTATCGTATCATGATAC 58.142 40.000 28.73 28.73 43.85 2.24
797 811 6.887002 AGAGGCTTGAGTATCGTATCATGATA 59.113 38.462 11.49 11.49 38.61 2.15
798 812 5.714333 AGAGGCTTGAGTATCGTATCATGAT 59.286 40.000 13.81 13.81 38.61 2.45
799 813 5.073428 AGAGGCTTGAGTATCGTATCATGA 58.927 41.667 0.00 0.00 38.61 3.07
800 814 5.182950 AGAGAGGCTTGAGTATCGTATCATG 59.817 44.000 0.00 0.00 38.61 3.07
801 815 5.321102 AGAGAGGCTTGAGTATCGTATCAT 58.679 41.667 0.00 0.00 38.61 2.45
802 816 4.720046 AGAGAGGCTTGAGTATCGTATCA 58.280 43.478 0.00 0.00 38.61 2.15
803 817 5.699097 AAGAGAGGCTTGAGTATCGTATC 57.301 43.478 0.00 0.00 38.61 2.24
804 818 5.830991 AGAAAGAGAGGCTTGAGTATCGTAT 59.169 40.000 0.00 0.00 38.61 3.06
805 819 5.194432 AGAAAGAGAGGCTTGAGTATCGTA 58.806 41.667 0.00 0.00 38.61 3.43
806 820 4.020543 AGAAAGAGAGGCTTGAGTATCGT 58.979 43.478 0.00 0.00 38.61 3.73
807 821 4.647424 AGAAAGAGAGGCTTGAGTATCG 57.353 45.455 0.00 0.00 38.61 2.92
808 822 8.956533 AATAAAGAAAGAGAGGCTTGAGTATC 57.043 34.615 0.00 0.00 36.80 2.24
811 825 9.746457 ATTAAATAAAGAAAGAGAGGCTTGAGT 57.254 29.630 0.00 0.00 36.80 3.41
828 842 9.967451 TGGTGAGGTGACATAGAATTAAATAAA 57.033 29.630 0.00 0.00 0.00 1.40
829 843 9.967451 TTGGTGAGGTGACATAGAATTAAATAA 57.033 29.630 0.00 0.00 0.00 1.40
830 844 9.967451 TTTGGTGAGGTGACATAGAATTAAATA 57.033 29.630 0.00 0.00 0.00 1.40
831 845 8.739972 GTTTGGTGAGGTGACATAGAATTAAAT 58.260 33.333 0.00 0.00 0.00 1.40
832 846 7.942341 AGTTTGGTGAGGTGACATAGAATTAAA 59.058 33.333 0.00 0.00 0.00 1.52
833 847 7.458397 AGTTTGGTGAGGTGACATAGAATTAA 58.542 34.615 0.00 0.00 0.00 1.40
834 848 7.016153 AGTTTGGTGAGGTGACATAGAATTA 57.984 36.000 0.00 0.00 0.00 1.40
835 849 5.880901 AGTTTGGTGAGGTGACATAGAATT 58.119 37.500 0.00 0.00 0.00 2.17
836 850 5.505181 AGTTTGGTGAGGTGACATAGAAT 57.495 39.130 0.00 0.00 0.00 2.40
837 851 4.974645 AGTTTGGTGAGGTGACATAGAA 57.025 40.909 0.00 0.00 0.00 2.10
838 852 4.641396 CAAGTTTGGTGAGGTGACATAGA 58.359 43.478 0.00 0.00 0.00 1.98
839 853 3.189287 GCAAGTTTGGTGAGGTGACATAG 59.811 47.826 0.00 0.00 0.00 2.23
840 854 3.146066 GCAAGTTTGGTGAGGTGACATA 58.854 45.455 0.00 0.00 0.00 2.29
841 855 1.956477 GCAAGTTTGGTGAGGTGACAT 59.044 47.619 0.00 0.00 0.00 3.06
842 856 1.064758 AGCAAGTTTGGTGAGGTGACA 60.065 47.619 0.00 0.00 37.53 3.58
843 857 1.680338 AGCAAGTTTGGTGAGGTGAC 58.320 50.000 0.00 0.00 37.53 3.67
844 858 2.435372 AAGCAAGTTTGGTGAGGTGA 57.565 45.000 0.00 0.00 39.13 4.02
845 859 3.214328 ACTAAGCAAGTTTGGTGAGGTG 58.786 45.455 11.91 0.00 40.66 4.00
846 860 3.577805 ACTAAGCAAGTTTGGTGAGGT 57.422 42.857 11.91 3.28 40.66 3.85
847 861 3.004734 CCAACTAAGCAAGTTTGGTGAGG 59.995 47.826 11.91 2.78 46.61 3.86
848 862 3.550842 GCCAACTAAGCAAGTTTGGTGAG 60.551 47.826 6.84 6.84 46.61 3.51
849 863 2.360801 GCCAACTAAGCAAGTTTGGTGA 59.639 45.455 15.27 0.00 46.61 4.02
850 864 2.100584 TGCCAACTAAGCAAGTTTGGTG 59.899 45.455 15.27 1.49 46.61 4.17
851 865 2.383855 TGCCAACTAAGCAAGTTTGGT 58.616 42.857 15.27 0.00 46.61 3.67
852 866 3.319755 CATGCCAACTAAGCAAGTTTGG 58.680 45.455 1.98 8.28 46.61 3.28
853 867 2.733026 GCATGCCAACTAAGCAAGTTTG 59.267 45.455 6.36 1.07 46.61 2.93
854 868 2.364970 TGCATGCCAACTAAGCAAGTTT 59.635 40.909 16.68 0.00 46.61 2.66
856 870 1.619654 TGCATGCCAACTAAGCAAGT 58.380 45.000 16.68 0.00 44.83 3.16
857 871 2.164827 TCATGCATGCCAACTAAGCAAG 59.835 45.455 22.25 0.00 44.83 4.01
858 872 2.169330 TCATGCATGCCAACTAAGCAA 58.831 42.857 22.25 0.00 44.83 3.91
859 873 1.836802 TCATGCATGCCAACTAAGCA 58.163 45.000 22.25 0.00 45.94 3.91
860 874 3.567164 AGTATCATGCATGCCAACTAAGC 59.433 43.478 22.25 4.42 0.00 3.09
861 875 5.762825 AAGTATCATGCATGCCAACTAAG 57.237 39.130 22.25 0.00 0.00 2.18
862 876 6.207221 CCATAAGTATCATGCATGCCAACTAA 59.793 38.462 22.25 2.92 0.00 2.24
863 877 5.706833 CCATAAGTATCATGCATGCCAACTA 59.293 40.000 22.25 10.37 0.00 2.24
864 878 4.521639 CCATAAGTATCATGCATGCCAACT 59.478 41.667 22.25 19.38 0.00 3.16
865 879 4.321452 CCCATAAGTATCATGCATGCCAAC 60.321 45.833 22.25 17.59 0.00 3.77
866 880 3.827876 CCCATAAGTATCATGCATGCCAA 59.172 43.478 22.25 5.34 0.00 4.52
867 881 3.423749 CCCATAAGTATCATGCATGCCA 58.576 45.455 22.25 8.84 0.00 4.92
868 882 2.165030 GCCCATAAGTATCATGCATGCC 59.835 50.000 22.25 11.72 0.00 4.40
869 883 2.821378 TGCCCATAAGTATCATGCATGC 59.179 45.455 22.25 11.82 0.00 4.06
870 884 3.119602 GCTGCCCATAAGTATCATGCATG 60.120 47.826 21.07 21.07 0.00 4.06
871 885 3.087031 GCTGCCCATAAGTATCATGCAT 58.913 45.455 0.00 0.00 0.00 3.96
872 886 2.507484 GCTGCCCATAAGTATCATGCA 58.493 47.619 0.00 0.00 0.00 3.96
873 887 1.815003 GGCTGCCCATAAGTATCATGC 59.185 52.381 7.66 0.00 0.00 4.06
874 888 3.430042 AGGCTGCCCATAAGTATCATG 57.570 47.619 16.57 0.00 0.00 3.07
875 889 5.786121 ATTAGGCTGCCCATAAGTATCAT 57.214 39.130 16.57 0.00 0.00 2.45
876 890 6.696042 TTATTAGGCTGCCCATAAGTATCA 57.304 37.500 16.57 0.00 0.00 2.15
877 891 7.665974 AGTTTTATTAGGCTGCCCATAAGTATC 59.334 37.037 16.57 9.43 0.00 2.24
878 892 7.526918 AGTTTTATTAGGCTGCCCATAAGTAT 58.473 34.615 16.57 5.45 0.00 2.12
879 893 6.906848 AGTTTTATTAGGCTGCCCATAAGTA 58.093 36.000 16.57 7.77 0.00 2.24
880 894 5.766590 AGTTTTATTAGGCTGCCCATAAGT 58.233 37.500 16.57 0.00 0.00 2.24
881 895 6.998673 ACTAGTTTTATTAGGCTGCCCATAAG 59.001 38.462 16.57 8.46 0.00 1.73
882 896 6.906848 ACTAGTTTTATTAGGCTGCCCATAA 58.093 36.000 16.57 15.05 0.00 1.90
883 897 6.509523 ACTAGTTTTATTAGGCTGCCCATA 57.490 37.500 16.57 9.55 0.00 2.74
884 898 5.377478 GACTAGTTTTATTAGGCTGCCCAT 58.623 41.667 16.57 10.63 0.00 4.00
885 899 4.682320 CGACTAGTTTTATTAGGCTGCCCA 60.682 45.833 16.57 0.00 0.00 5.36
886 900 3.808174 CGACTAGTTTTATTAGGCTGCCC 59.192 47.826 16.57 0.00 0.00 5.36
887 901 4.507021 GTCGACTAGTTTTATTAGGCTGCC 59.493 45.833 11.65 11.65 0.00 4.85
888 902 4.507021 GGTCGACTAGTTTTATTAGGCTGC 59.493 45.833 16.46 0.00 0.00 5.25
889 903 5.048507 GGGTCGACTAGTTTTATTAGGCTG 58.951 45.833 16.46 0.00 0.00 4.85
890 904 4.100653 GGGGTCGACTAGTTTTATTAGGCT 59.899 45.833 16.46 0.00 0.00 4.58
891 905 4.141869 TGGGGTCGACTAGTTTTATTAGGC 60.142 45.833 16.46 0.00 0.00 3.93
892 906 5.354767 GTGGGGTCGACTAGTTTTATTAGG 58.645 45.833 16.46 0.00 0.00 2.69
893 907 5.128335 AGGTGGGGTCGACTAGTTTTATTAG 59.872 44.000 16.46 0.00 0.00 1.73
894 908 5.025453 AGGTGGGGTCGACTAGTTTTATTA 58.975 41.667 16.46 0.00 0.00 0.98
895 909 3.842436 AGGTGGGGTCGACTAGTTTTATT 59.158 43.478 16.46 0.00 0.00 1.40
896 910 3.197116 CAGGTGGGGTCGACTAGTTTTAT 59.803 47.826 16.46 0.00 0.00 1.40
897 911 2.564062 CAGGTGGGGTCGACTAGTTTTA 59.436 50.000 16.46 0.00 0.00 1.52
898 912 1.346722 CAGGTGGGGTCGACTAGTTTT 59.653 52.381 16.46 0.00 0.00 2.43
899 913 0.974383 CAGGTGGGGTCGACTAGTTT 59.026 55.000 16.46 0.00 0.00 2.66
900 914 0.113776 TCAGGTGGGGTCGACTAGTT 59.886 55.000 16.46 0.00 0.00 2.24
901 915 0.113776 TTCAGGTGGGGTCGACTAGT 59.886 55.000 16.46 0.00 0.00 2.57
902 916 0.531200 GTTCAGGTGGGGTCGACTAG 59.469 60.000 16.46 0.00 0.00 2.57
903 917 0.901580 GGTTCAGGTGGGGTCGACTA 60.902 60.000 16.46 0.00 0.00 2.59
1281 1306 3.449227 TCCCAGCGCGACCAGTAG 61.449 66.667 12.10 0.00 0.00 2.57
1369 1394 2.211279 ACCCTTGCCCTCCTCCTT 59.789 61.111 0.00 0.00 0.00 3.36
1532 1557 2.168496 CCTCCACCGTCTTCTTCACTA 58.832 52.381 0.00 0.00 0.00 2.74
1748 1773 5.024118 TCAAACCTAAAACCCCAACAGAAA 58.976 37.500 0.00 0.00 0.00 2.52
1772 1797 6.884832 TCCAATACCGATTTGACTGACTATT 58.115 36.000 0.00 0.00 0.00 1.73
1773 1798 6.479972 TCCAATACCGATTTGACTGACTAT 57.520 37.500 0.00 0.00 0.00 2.12
1845 1878 4.532834 ACCACCACACCACCATTATTATC 58.467 43.478 0.00 0.00 0.00 1.75
1846 1879 4.017958 TGACCACCACACCACCATTATTAT 60.018 41.667 0.00 0.00 0.00 1.28
1847 1880 3.330998 TGACCACCACACCACCATTATTA 59.669 43.478 0.00 0.00 0.00 0.98
1878 1911 7.660030 AATCCAAATATTTACACCAAGGAGG 57.340 36.000 0.00 0.00 45.67 4.30
1879 1912 7.981225 CCAAATCCAAATATTTACACCAAGGAG 59.019 37.037 0.00 0.00 0.00 3.69
1910 1943 2.108075 TGACACCAACCATGTGGAGAAT 59.892 45.455 9.25 0.00 41.65 2.40
1915 1948 1.814394 CTCATGACACCAACCATGTGG 59.186 52.381 0.85 0.85 44.92 4.17
1916 1949 2.227149 CACTCATGACACCAACCATGTG 59.773 50.000 0.00 0.00 40.59 3.21
1917 1950 2.158623 ACACTCATGACACCAACCATGT 60.159 45.455 0.00 0.00 40.59 3.21
1937 1970 7.431960 CACACCATTTGCATAATATGTACACAC 59.568 37.037 0.00 0.00 0.00 3.82
1944 1977 6.146510 GGCATTCACACCATTTGCATAATATG 59.853 38.462 0.00 0.00 35.04 1.78
1946 1979 5.453057 GGGCATTCACACCATTTGCATAATA 60.453 40.000 0.00 0.00 35.04 0.98
1989 2022 5.362143 TGTGAAATTCTTGAACCAACCATGA 59.638 36.000 0.00 0.00 0.00 3.07
1990 2023 5.599732 TGTGAAATTCTTGAACCAACCATG 58.400 37.500 0.00 0.00 0.00 3.66
1991 2024 5.363580 ACTGTGAAATTCTTGAACCAACCAT 59.636 36.000 0.00 0.00 0.00 3.55
1992 2025 4.709397 ACTGTGAAATTCTTGAACCAACCA 59.291 37.500 0.00 0.00 0.00 3.67
1993 2026 5.262588 ACTGTGAAATTCTTGAACCAACC 57.737 39.130 0.00 0.00 0.00 3.77
1994 2027 8.871686 AAATACTGTGAAATTCTTGAACCAAC 57.128 30.769 0.00 0.00 0.00 3.77
1995 2028 9.883142 AAAAATACTGTGAAATTCTTGAACCAA 57.117 25.926 0.00 0.00 0.00 3.67
1996 2029 9.311916 CAAAAATACTGTGAAATTCTTGAACCA 57.688 29.630 0.00 0.00 0.00 3.67
2110 2296 8.936864 AGTTGAACTCAATAAAATCTTCCTACG 58.063 33.333 0.00 0.00 38.24 3.51
2211 2397 6.553476 GGCATACACCTATTCCCCTAAAAATT 59.447 38.462 0.00 0.00 0.00 1.82
2212 2398 6.075315 GGCATACACCTATTCCCCTAAAAAT 58.925 40.000 0.00 0.00 0.00 1.82
2425 2612 9.997172 AGGAATTTTGTAGGATTCTATTCCTTT 57.003 29.630 8.66 0.00 43.88 3.11
2588 2775 0.173708 GGTCAGCCGTCAACCTAGAG 59.826 60.000 0.00 0.00 0.00 2.43
2595 2782 0.324614 ATGTCATGGTCAGCCGTCAA 59.675 50.000 0.00 0.00 37.67 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.