Multiple sequence alignment - TraesCS5A01G508600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G508600 chr5A 100.000 2740 0 0 1 2740 673091089 673088350 0.000000e+00 5060.0
1 TraesCS5A01G508600 chr5A 94.000 250 15 0 2491 2740 700657542 700657293 1.990000e-101 379.0
2 TraesCS5A01G508600 chr4D 94.137 1552 84 6 1 1548 493015684 493017232 0.000000e+00 2355.0
3 TraesCS5A01G508600 chr4D 87.220 892 51 24 1574 2443 493017224 493018074 0.000000e+00 957.0
4 TraesCS5A01G508600 chr4B 87.014 1979 164 50 1 1946 631610003 631608085 0.000000e+00 2145.0
5 TraesCS5A01G508600 chr4B 93.103 406 14 9 1992 2389 631608084 631607685 1.410000e-162 582.0
6 TraesCS5A01G508600 chr2D 93.421 152 10 0 1325 1476 592411297 592411448 2.750000e-55 226.0
7 TraesCS5A01G508600 chr2D 81.893 243 43 1 2498 2740 280644797 280645038 1.290000e-48 204.0
8 TraesCS5A01G508600 chr2D 73.633 622 122 32 85 685 32642800 32643400 4.630000e-48 202.0
9 TraesCS5A01G508600 chr2D 97.297 37 1 0 1704 1740 619046047 619046011 2.280000e-06 63.9
10 TraesCS5A01G508600 chr2A 92.105 152 12 0 1325 1476 726986416 726986567 5.940000e-52 215.0
11 TraesCS5A01G508600 chr2B 91.447 152 13 0 1325 1476 718396641 718396792 2.760000e-50 209.0
12 TraesCS5A01G508600 chr2B 86.066 122 17 0 2492 2613 482627041 482627162 6.160000e-27 132.0
13 TraesCS5A01G508600 chr2B 85.366 123 18 0 2491 2613 77567094 77567216 7.960000e-26 128.0
14 TraesCS5A01G508600 chr2B 81.600 125 23 0 1328 1452 17857612 17857736 1.340000e-18 104.0
15 TraesCS5A01G508600 chr2B 100.000 29 0 0 1712 1740 756552612 756552584 1.000000e-03 54.7
16 TraesCS5A01G508600 chr3B 73.101 487 112 16 53 530 659781702 659781226 3.650000e-34 156.0
17 TraesCS5A01G508600 chr6B 89.076 119 13 0 2495 2613 620654463 620654345 6.110000e-32 148.0
18 TraesCS5A01G508600 chr6D 87.069 116 15 0 2492 2607 102120553 102120438 6.160000e-27 132.0
19 TraesCS5A01G508600 chr7A 85.366 123 18 0 2491 2613 639288475 639288353 7.960000e-26 128.0
20 TraesCS5A01G508600 chr7A 83.704 135 20 2 2481 2613 555644519 555644653 2.860000e-25 126.0
21 TraesCS5A01G508600 chr3A 85.833 120 17 0 2494 2613 395753803 395753684 7.960000e-26 128.0
22 TraesCS5A01G508600 chr3D 82.400 125 22 0 1328 1452 500712380 500712504 2.880000e-20 110.0
23 TraesCS5A01G508600 chr4A 81.600 125 23 0 1328 1452 695988051 695988175 1.340000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G508600 chr5A 673088350 673091089 2739 True 5060.0 5060 100.0000 1 2740 1 chr5A.!!$R1 2739
1 TraesCS5A01G508600 chr4D 493015684 493018074 2390 False 1656.0 2355 90.6785 1 2443 2 chr4D.!!$F1 2442
2 TraesCS5A01G508600 chr4B 631607685 631610003 2318 True 1363.5 2145 90.0585 1 2389 2 chr4B.!!$R1 2388
3 TraesCS5A01G508600 chr2D 32642800 32643400 600 False 202.0 202 73.6330 85 685 1 chr2D.!!$F1 600

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
600 621 0.250424 TGTCGTGAGGTGGTCTACGA 60.250 55.0 0.0 0.0 42.49 3.43 F
1185 1213 1.052124 TCCAGTTCACCTTCCACGGT 61.052 55.0 0.0 0.0 37.93 4.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1675 1709 0.036858 GAAGTGGAGAGTGGACCTGC 60.037 60.000 0.0 0.0 0.0 4.85 R
2673 2744 1.000607 TCGTCGTTCAGGTCCTCAAAG 60.001 52.381 0.0 0.0 0.0 2.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 5.283060 ACATATCTTGAGCGAACAAACAC 57.717 39.130 0.00 0.00 0.00 3.32
52 53 2.949714 ATCTTGAGCGAACAAACACG 57.050 45.000 0.00 0.00 0.00 4.49
67 69 3.322595 AAACACGTGTTAGGGTTTCCCG 61.323 50.000 32.47 0.00 43.54 5.14
223 228 2.478989 CTGCTCAGGATGCCAAGTG 58.521 57.895 0.00 0.00 34.76 3.16
245 250 0.735471 CGACGGCTCTCTGAAGATGA 59.265 55.000 0.00 0.00 0.00 2.92
258 263 4.628766 TCTGAAGATGAAATGCAGTTCTCG 59.371 41.667 25.47 11.95 0.00 4.04
271 277 2.362717 CAGTTCTCGTCTTCTATCCCCC 59.637 54.545 0.00 0.00 0.00 5.40
279 286 2.136863 TCTTCTATCCCCCTCTCGTCT 58.863 52.381 0.00 0.00 0.00 4.18
283 290 1.074084 CTATCCCCCTCTCGTCTAGCA 59.926 57.143 0.00 0.00 0.00 3.49
291 298 3.570125 CCCTCTCGTCTAGCAATACATCA 59.430 47.826 0.00 0.00 0.00 3.07
366 376 3.888930 ACGGTGTTTGTCTTTGATGGATT 59.111 39.130 0.00 0.00 0.00 3.01
367 377 4.340950 ACGGTGTTTGTCTTTGATGGATTT 59.659 37.500 0.00 0.00 0.00 2.17
374 394 9.393512 TGTTTGTCTTTGATGGATTTGATTTTT 57.606 25.926 0.00 0.00 0.00 1.94
385 405 7.265647 TGGATTTGATTTTTGTTCGTCTACA 57.734 32.000 0.00 0.00 0.00 2.74
436 456 3.055891 TGATCCACGCTTCTCTTCATCAA 60.056 43.478 0.00 0.00 0.00 2.57
442 462 2.926200 CGCTTCTCTTCATCAACGACAT 59.074 45.455 0.00 0.00 0.00 3.06
509 529 4.771054 AGTTTCCAACGGTCTACTATGACT 59.229 41.667 0.00 0.00 37.16 3.41
527 547 2.488545 GACTAGCTTTGTCTCACTCCGA 59.511 50.000 10.98 0.00 0.00 4.55
564 585 1.503542 GTGGCATGTCTTCGGCTTG 59.496 57.895 0.00 0.00 0.00 4.01
580 601 0.801251 CTTGCTCCAGTGCTTGTAGC 59.199 55.000 0.60 0.60 42.82 3.58
587 608 0.786581 CAGTGCTTGTAGCTGTCGTG 59.213 55.000 0.00 0.00 42.97 4.35
600 621 0.250424 TGTCGTGAGGTGGTCTACGA 60.250 55.000 0.00 0.00 42.49 3.43
679 700 9.481340 TGATGAATAGATCGAAAGTTATTCCAG 57.519 33.333 13.95 0.00 33.45 3.86
802 828 2.670789 GCAACACGCCATTGAAGCATAA 60.671 45.455 0.00 0.00 32.94 1.90
916 944 4.847198 CCACAAGGAGCATGCCATATATA 58.153 43.478 15.66 0.00 36.89 0.86
961 989 3.677148 CGTCTCTCACCTTGCACACATAT 60.677 47.826 0.00 0.00 0.00 1.78
984 1012 1.134068 GGTGAAGGCCAAGTAGGATCC 60.134 57.143 5.01 2.48 41.22 3.36
998 1026 1.276421 AGGATCCAGTGGAGTGTTTCG 59.724 52.381 18.69 0.00 34.05 3.46
1185 1213 1.052124 TCCAGTTCACCTTCCACGGT 61.052 55.000 0.00 0.00 37.93 4.83
1341 1369 2.335011 CGTCAGCGCCGGATGATA 59.665 61.111 5.05 0.00 41.23 2.15
1513 1547 5.944599 TGGCCATTTGTAGTTTAACGGATTA 59.055 36.000 0.00 0.00 0.00 1.75
1531 1565 7.231705 CGGATTACGTCTACATATACTCGAT 57.768 40.000 0.00 0.00 37.93 3.59
1561 1595 6.452242 CATGCAGCATTATGATATTGGTTGT 58.548 36.000 4.69 0.00 0.00 3.32
1562 1596 5.834169 TGCAGCATTATGATATTGGTTGTG 58.166 37.500 0.00 0.00 0.00 3.33
1563 1597 5.360429 TGCAGCATTATGATATTGGTTGTGT 59.640 36.000 0.00 0.00 0.00 3.72
1564 1598 6.545298 TGCAGCATTATGATATTGGTTGTGTA 59.455 34.615 0.00 0.00 0.00 2.90
1565 1599 7.067981 TGCAGCATTATGATATTGGTTGTGTAA 59.932 33.333 0.00 0.00 0.00 2.41
1566 1600 7.379529 GCAGCATTATGATATTGGTTGTGTAAC 59.620 37.037 0.00 0.00 36.04 2.50
1567 1601 8.623903 CAGCATTATGATATTGGTTGTGTAACT 58.376 33.333 0.00 0.00 38.04 2.24
1568 1602 9.189156 AGCATTATGATATTGGTTGTGTAACTT 57.811 29.630 0.00 0.00 38.04 2.66
1569 1603 9.236691 GCATTATGATATTGGTTGTGTAACTTG 57.763 33.333 0.00 0.00 38.04 3.16
1576 1610 2.820197 TGGTTGTGTAACTTGTGTTGCA 59.180 40.909 0.00 0.00 44.32 4.08
1696 1730 0.900647 AGGTCCACTCTCCACTTCGG 60.901 60.000 0.00 0.00 0.00 4.30
1770 1807 1.676916 CCATGGTTCATCGACTGCAGT 60.677 52.381 21.88 21.88 0.00 4.40
1934 1982 7.527457 TGTGCATATGTAATCTAGCTAGTACG 58.473 38.462 20.10 5.49 0.00 3.67
1935 1983 7.174426 TGTGCATATGTAATCTAGCTAGTACGT 59.826 37.037 20.10 17.85 0.00 3.57
1936 1984 8.663025 GTGCATATGTAATCTAGCTAGTACGTA 58.337 37.037 20.10 19.18 0.00 3.57
1956 2004 5.524646 ACGTAGTAGTAGCTTTGTTGCAAAA 59.475 36.000 0.00 0.00 41.94 2.44
2065 2115 3.376234 CACAAGTAGGTGATGGCTGATTG 59.624 47.826 0.00 0.00 41.32 2.67
2066 2116 3.009473 ACAAGTAGGTGATGGCTGATTGT 59.991 43.478 0.00 0.00 0.00 2.71
2067 2117 4.225042 ACAAGTAGGTGATGGCTGATTGTA 59.775 41.667 0.00 0.00 0.00 2.41
2068 2118 5.104360 ACAAGTAGGTGATGGCTGATTGTAT 60.104 40.000 0.00 0.00 0.00 2.29
2069 2119 4.965814 AGTAGGTGATGGCTGATTGTATG 58.034 43.478 0.00 0.00 0.00 2.39
2070 2120 4.655649 AGTAGGTGATGGCTGATTGTATGA 59.344 41.667 0.00 0.00 0.00 2.15
2071 2121 4.719026 AGGTGATGGCTGATTGTATGAT 57.281 40.909 0.00 0.00 0.00 2.45
2072 2122 5.830799 AGGTGATGGCTGATTGTATGATA 57.169 39.130 0.00 0.00 0.00 2.15
2081 2133 7.216494 TGGCTGATTGTATGATAAAAGATCGA 58.784 34.615 0.00 0.00 0.00 3.59
2142 2203 8.519526 CCTTTTGTTCCTGCTTTATATGTTGTA 58.480 33.333 0.00 0.00 0.00 2.41
2312 2381 2.094182 GCTAATCTGGTGAGAACGGACA 60.094 50.000 0.00 0.00 0.00 4.02
2313 2382 2.457366 AATCTGGTGAGAACGGACAC 57.543 50.000 0.00 0.00 36.44 3.67
2315 2384 1.372997 CTGGTGAGAACGGACACGG 60.373 63.158 0.00 0.00 46.48 4.94
2347 2416 8.784043 GTTTCCTAATATGGTGTGTATTCCATC 58.216 37.037 0.00 0.00 42.56 3.51
2349 2418 8.275187 TCCTAATATGGTGTGTATTCCATCTT 57.725 34.615 0.00 0.90 42.56 2.40
2392 2463 8.141835 TCAATATTGACCGAGTTTATGTGATG 57.858 34.615 14.23 0.00 31.01 3.07
2415 2486 9.208022 GATGAGAATATCGAATCAACACCATTA 57.792 33.333 0.00 0.00 0.00 1.90
2502 2573 8.691661 ATGTTTGGTATTGTAAAGAGTGAAGT 57.308 30.769 0.00 0.00 0.00 3.01
2503 2574 7.925993 TGTTTGGTATTGTAAAGAGTGAAGTG 58.074 34.615 0.00 0.00 0.00 3.16
2504 2575 6.554334 TTGGTATTGTAAAGAGTGAAGTGC 57.446 37.500 0.00 0.00 0.00 4.40
2505 2576 5.616270 TGGTATTGTAAAGAGTGAAGTGCA 58.384 37.500 0.00 0.00 0.00 4.57
2506 2577 6.237901 TGGTATTGTAAAGAGTGAAGTGCAT 58.762 36.000 0.00 0.00 0.00 3.96
2507 2578 6.714810 TGGTATTGTAAAGAGTGAAGTGCATT 59.285 34.615 0.00 0.00 0.00 3.56
2508 2579 7.023575 GGTATTGTAAAGAGTGAAGTGCATTG 58.976 38.462 0.00 0.00 0.00 2.82
2509 2580 6.639632 ATTGTAAAGAGTGAAGTGCATTGT 57.360 33.333 0.00 0.00 0.00 2.71
2510 2581 7.744087 ATTGTAAAGAGTGAAGTGCATTGTA 57.256 32.000 0.00 0.00 0.00 2.41
2511 2582 6.785488 TGTAAAGAGTGAAGTGCATTGTAG 57.215 37.500 0.00 0.00 0.00 2.74
2512 2583 6.521162 TGTAAAGAGTGAAGTGCATTGTAGA 58.479 36.000 0.00 0.00 0.00 2.59
2513 2584 7.161404 TGTAAAGAGTGAAGTGCATTGTAGAT 58.839 34.615 0.00 0.00 0.00 1.98
2514 2585 6.734104 AAAGAGTGAAGTGCATTGTAGATC 57.266 37.500 0.00 0.00 0.00 2.75
2515 2586 4.764172 AGAGTGAAGTGCATTGTAGATCC 58.236 43.478 0.00 0.00 0.00 3.36
2516 2587 3.873952 GAGTGAAGTGCATTGTAGATCCC 59.126 47.826 0.00 0.00 0.00 3.85
2517 2588 2.945668 GTGAAGTGCATTGTAGATCCCC 59.054 50.000 0.00 0.00 0.00 4.81
2518 2589 2.575735 TGAAGTGCATTGTAGATCCCCA 59.424 45.455 0.00 0.00 0.00 4.96
2519 2590 3.010027 TGAAGTGCATTGTAGATCCCCAA 59.990 43.478 0.00 0.00 0.00 4.12
2520 2591 3.737559 AGTGCATTGTAGATCCCCAAA 57.262 42.857 0.00 0.00 0.00 3.28
2521 2592 3.356290 AGTGCATTGTAGATCCCCAAAC 58.644 45.455 0.00 0.00 0.00 2.93
2522 2593 3.010584 AGTGCATTGTAGATCCCCAAACT 59.989 43.478 0.00 0.00 0.00 2.66
2523 2594 4.227300 AGTGCATTGTAGATCCCCAAACTA 59.773 41.667 0.00 0.00 0.00 2.24
2524 2595 5.103940 AGTGCATTGTAGATCCCCAAACTAT 60.104 40.000 0.00 0.00 0.00 2.12
2525 2596 5.594317 GTGCATTGTAGATCCCCAAACTATT 59.406 40.000 0.00 0.00 0.00 1.73
2526 2597 6.096846 GTGCATTGTAGATCCCCAAACTATTT 59.903 38.462 0.00 0.00 0.00 1.40
2527 2598 6.667414 TGCATTGTAGATCCCCAAACTATTTT 59.333 34.615 0.00 0.00 0.00 1.82
2528 2599 7.836685 TGCATTGTAGATCCCCAAACTATTTTA 59.163 33.333 0.00 0.00 0.00 1.52
2529 2600 8.691797 GCATTGTAGATCCCCAAACTATTTTAA 58.308 33.333 0.00 0.00 0.00 1.52
2531 2602 8.817092 TTGTAGATCCCCAAACTATTTTAAGG 57.183 34.615 0.00 0.00 0.00 2.69
2532 2603 7.351166 TGTAGATCCCCAAACTATTTTAAGGG 58.649 38.462 6.53 6.53 38.23 3.95
2533 2604 6.417503 AGATCCCCAAACTATTTTAAGGGT 57.582 37.500 10.78 0.00 38.13 4.34
2534 2605 6.194967 AGATCCCCAAACTATTTTAAGGGTG 58.805 40.000 10.78 0.68 38.13 4.61
2535 2606 5.342361 TCCCCAAACTATTTTAAGGGTGT 57.658 39.130 10.78 0.00 38.13 4.16
2536 2607 5.326900 TCCCCAAACTATTTTAAGGGTGTC 58.673 41.667 10.78 0.00 38.13 3.67
2537 2608 5.081032 CCCCAAACTATTTTAAGGGTGTCA 58.919 41.667 0.00 0.00 34.63 3.58
2538 2609 5.719563 CCCCAAACTATTTTAAGGGTGTCAT 59.280 40.000 0.00 0.00 34.63 3.06
2539 2610 6.350949 CCCCAAACTATTTTAAGGGTGTCATG 60.351 42.308 0.00 0.00 34.63 3.07
2540 2611 6.210584 CCCAAACTATTTTAAGGGTGTCATGT 59.789 38.462 0.00 0.00 0.00 3.21
2541 2612 7.394923 CCCAAACTATTTTAAGGGTGTCATGTA 59.605 37.037 0.00 0.00 0.00 2.29
2542 2613 8.458843 CCAAACTATTTTAAGGGTGTCATGTAG 58.541 37.037 0.00 0.00 0.00 2.74
2543 2614 8.458843 CAAACTATTTTAAGGGTGTCATGTAGG 58.541 37.037 0.00 0.00 0.00 3.18
2544 2615 7.266905 ACTATTTTAAGGGTGTCATGTAGGT 57.733 36.000 0.00 0.00 0.00 3.08
2545 2616 7.696017 ACTATTTTAAGGGTGTCATGTAGGTT 58.304 34.615 0.00 0.00 0.00 3.50
2546 2617 8.168058 ACTATTTTAAGGGTGTCATGTAGGTTT 58.832 33.333 0.00 0.00 0.00 3.27
2547 2618 7.849322 ATTTTAAGGGTGTCATGTAGGTTTT 57.151 32.000 0.00 0.00 0.00 2.43
2548 2619 6.887626 TTTAAGGGTGTCATGTAGGTTTTC 57.112 37.500 0.00 0.00 0.00 2.29
2549 2620 3.053831 AGGGTGTCATGTAGGTTTTCG 57.946 47.619 0.00 0.00 0.00 3.46
2550 2621 2.635915 AGGGTGTCATGTAGGTTTTCGA 59.364 45.455 0.00 0.00 0.00 3.71
2551 2622 3.071892 AGGGTGTCATGTAGGTTTTCGAA 59.928 43.478 0.00 0.00 0.00 3.71
2552 2623 3.187842 GGGTGTCATGTAGGTTTTCGAAC 59.812 47.826 0.00 0.00 0.00 3.95
2553 2624 4.062991 GGTGTCATGTAGGTTTTCGAACT 58.937 43.478 0.00 0.00 0.00 3.01
2554 2625 5.232463 GGTGTCATGTAGGTTTTCGAACTA 58.768 41.667 0.00 0.00 0.00 2.24
2555 2626 5.873164 GGTGTCATGTAGGTTTTCGAACTAT 59.127 40.000 0.00 0.00 0.00 2.12
2556 2627 6.183360 GGTGTCATGTAGGTTTTCGAACTATG 60.183 42.308 0.00 0.00 0.00 2.23
2557 2628 6.588756 GTGTCATGTAGGTTTTCGAACTATGA 59.411 38.462 0.00 0.00 0.00 2.15
2558 2629 7.117236 GTGTCATGTAGGTTTTCGAACTATGAA 59.883 37.037 0.00 0.00 0.00 2.57
2559 2630 7.658167 TGTCATGTAGGTTTTCGAACTATGAAA 59.342 33.333 0.00 0.00 33.73 2.69
2560 2631 8.500773 GTCATGTAGGTTTTCGAACTATGAAAA 58.499 33.333 0.00 0.00 41.59 2.29
2561 2632 9.226606 TCATGTAGGTTTTCGAACTATGAAAAT 57.773 29.630 0.00 0.00 44.44 1.82
2562 2633 9.490663 CATGTAGGTTTTCGAACTATGAAAATC 57.509 33.333 0.00 4.13 44.44 2.17
2563 2634 7.735500 TGTAGGTTTTCGAACTATGAAAATCG 58.264 34.615 0.00 0.00 46.21 3.34
2564 2635 6.796705 AGGTTTTCGAACTATGAAAATCGT 57.203 33.333 0.00 0.00 46.21 3.73
2565 2636 6.828672 AGGTTTTCGAACTATGAAAATCGTC 58.171 36.000 0.00 0.00 46.21 4.20
2566 2637 6.425721 AGGTTTTCGAACTATGAAAATCGTCA 59.574 34.615 0.00 0.00 46.21 4.35
2567 2638 7.119262 AGGTTTTCGAACTATGAAAATCGTCAT 59.881 33.333 0.00 0.00 46.21 3.06
2568 2639 7.425595 GGTTTTCGAACTATGAAAATCGTCATC 59.574 37.037 0.00 0.00 44.44 2.92
2569 2640 7.827819 TTTCGAACTATGAAAATCGTCATCT 57.172 32.000 0.00 0.00 39.07 2.90
2570 2641 8.920509 TTTCGAACTATGAAAATCGTCATCTA 57.079 30.769 0.00 0.00 39.07 1.98
2571 2642 8.561932 TTCGAACTATGAAAATCGTCATCTAG 57.438 34.615 0.00 0.00 39.07 2.43
2572 2643 7.139392 TCGAACTATGAAAATCGTCATCTAGG 58.861 38.462 0.00 0.00 39.07 3.02
2573 2644 6.918569 CGAACTATGAAAATCGTCATCTAGGT 59.081 38.462 0.00 0.00 39.07 3.08
2574 2645 7.113684 CGAACTATGAAAATCGTCATCTAGGTC 59.886 40.741 0.00 0.00 39.07 3.85
2575 2646 6.750148 ACTATGAAAATCGTCATCTAGGTCC 58.250 40.000 0.00 0.00 39.07 4.46
2576 2647 5.878406 ATGAAAATCGTCATCTAGGTCCT 57.122 39.130 0.00 0.00 32.65 3.85
2577 2648 5.677319 TGAAAATCGTCATCTAGGTCCTT 57.323 39.130 0.00 0.00 0.00 3.36
2578 2649 6.785337 TGAAAATCGTCATCTAGGTCCTTA 57.215 37.500 0.00 0.00 0.00 2.69
2579 2650 7.177832 TGAAAATCGTCATCTAGGTCCTTAA 57.822 36.000 0.00 0.00 0.00 1.85
2580 2651 7.617225 TGAAAATCGTCATCTAGGTCCTTAAA 58.383 34.615 0.00 0.00 0.00 1.52
2581 2652 7.764443 TGAAAATCGTCATCTAGGTCCTTAAAG 59.236 37.037 0.00 0.00 0.00 1.85
2582 2653 6.793505 AATCGTCATCTAGGTCCTTAAAGT 57.206 37.500 0.00 0.00 0.00 2.66
2583 2654 5.578005 TCGTCATCTAGGTCCTTAAAGTG 57.422 43.478 0.00 0.00 0.00 3.16
2584 2655 5.014858 TCGTCATCTAGGTCCTTAAAGTGT 58.985 41.667 0.00 0.00 0.00 3.55
2585 2656 6.182627 TCGTCATCTAGGTCCTTAAAGTGTA 58.817 40.000 0.00 0.00 0.00 2.90
2586 2657 6.660521 TCGTCATCTAGGTCCTTAAAGTGTAA 59.339 38.462 0.00 0.00 0.00 2.41
2587 2658 7.341256 TCGTCATCTAGGTCCTTAAAGTGTAAT 59.659 37.037 0.00 0.00 0.00 1.89
2588 2659 8.627403 CGTCATCTAGGTCCTTAAAGTGTAATA 58.373 37.037 0.00 0.00 0.00 0.98
2593 2664 9.317827 TCTAGGTCCTTAAAGTGTAATAAGTGT 57.682 33.333 0.00 0.00 0.00 3.55
2594 2665 9.939802 CTAGGTCCTTAAAGTGTAATAAGTGTT 57.060 33.333 0.00 0.00 0.00 3.32
2596 2667 9.281371 AGGTCCTTAAAGTGTAATAAGTGTTTC 57.719 33.333 0.00 0.00 0.00 2.78
2597 2668 9.059260 GGTCCTTAAAGTGTAATAAGTGTTTCA 57.941 33.333 0.00 0.00 0.00 2.69
2603 2674 7.687941 AAGTGTAATAAGTGTTTCATCCAGG 57.312 36.000 0.00 0.00 0.00 4.45
2604 2675 6.779860 AGTGTAATAAGTGTTTCATCCAGGT 58.220 36.000 0.00 0.00 0.00 4.00
2605 2676 6.879458 AGTGTAATAAGTGTTTCATCCAGGTC 59.121 38.462 0.00 0.00 0.00 3.85
2606 2677 6.093633 GTGTAATAAGTGTTTCATCCAGGTCC 59.906 42.308 0.00 0.00 0.00 4.46
2607 2678 4.927267 ATAAGTGTTTCATCCAGGTCCA 57.073 40.909 0.00 0.00 0.00 4.02
2608 2679 2.867109 AGTGTTTCATCCAGGTCCAG 57.133 50.000 0.00 0.00 0.00 3.86
2609 2680 2.338809 AGTGTTTCATCCAGGTCCAGA 58.661 47.619 0.00 0.00 0.00 3.86
2610 2681 2.711009 AGTGTTTCATCCAGGTCCAGAA 59.289 45.455 0.00 0.00 0.00 3.02
2611 2682 3.331889 AGTGTTTCATCCAGGTCCAGAAT 59.668 43.478 0.00 0.00 0.00 2.40
2612 2683 3.691609 GTGTTTCATCCAGGTCCAGAATC 59.308 47.826 0.00 0.00 0.00 2.52
2613 2684 3.330405 TGTTTCATCCAGGTCCAGAATCA 59.670 43.478 0.00 0.00 0.00 2.57
2614 2685 3.920231 TTCATCCAGGTCCAGAATCAG 57.080 47.619 0.00 0.00 0.00 2.90
2615 2686 2.837947 TCATCCAGGTCCAGAATCAGT 58.162 47.619 0.00 0.00 0.00 3.41
2616 2687 3.184628 TCATCCAGGTCCAGAATCAGTT 58.815 45.455 0.00 0.00 0.00 3.16
2617 2688 3.198635 TCATCCAGGTCCAGAATCAGTTC 59.801 47.826 0.00 0.00 34.46 3.01
2618 2689 2.619931 TCCAGGTCCAGAATCAGTTCA 58.380 47.619 0.00 0.00 36.79 3.18
2619 2690 2.978978 TCCAGGTCCAGAATCAGTTCAA 59.021 45.455 0.00 0.00 36.79 2.69
2620 2691 3.588842 TCCAGGTCCAGAATCAGTTCAAT 59.411 43.478 0.00 0.00 36.79 2.57
2621 2692 4.782691 TCCAGGTCCAGAATCAGTTCAATA 59.217 41.667 0.00 0.00 36.79 1.90
2622 2693 4.878397 CCAGGTCCAGAATCAGTTCAATAC 59.122 45.833 0.00 0.00 36.79 1.89
2623 2694 5.338708 CCAGGTCCAGAATCAGTTCAATACT 60.339 44.000 0.00 0.00 36.79 2.12
2624 2695 6.127054 CCAGGTCCAGAATCAGTTCAATACTA 60.127 42.308 0.00 0.00 36.79 1.82
2625 2696 7.331026 CAGGTCCAGAATCAGTTCAATACTAA 58.669 38.462 0.00 0.00 36.79 2.24
2626 2697 7.824289 CAGGTCCAGAATCAGTTCAATACTAAA 59.176 37.037 0.00 0.00 36.79 1.85
2627 2698 8.043710 AGGTCCAGAATCAGTTCAATACTAAAG 58.956 37.037 0.00 0.00 36.79 1.85
2628 2699 7.824779 GGTCCAGAATCAGTTCAATACTAAAGT 59.175 37.037 0.00 0.00 36.79 2.66
2629 2700 9.871238 GTCCAGAATCAGTTCAATACTAAAGTA 57.129 33.333 0.00 0.00 36.79 2.24
2631 2702 9.877178 CCAGAATCAGTTCAATACTAAAGTAGT 57.123 33.333 0.00 0.00 38.52 2.73
2637 2708 8.740906 TCAGTTCAATACTAAAGTAGTCTGAGG 58.259 37.037 4.37 0.12 40.14 3.86
2638 2709 8.740906 CAGTTCAATACTAAAGTAGTCTGAGGA 58.259 37.037 0.00 0.00 40.14 3.71
2639 2710 8.741841 AGTTCAATACTAAAGTAGTCTGAGGAC 58.258 37.037 0.00 0.00 40.14 3.85
2640 2711 7.642082 TCAATACTAAAGTAGTCTGAGGACC 57.358 40.000 0.00 0.00 43.05 4.46
2641 2712 7.411808 TCAATACTAAAGTAGTCTGAGGACCT 58.588 38.462 0.00 0.00 43.05 3.85
2642 2713 8.554870 TCAATACTAAAGTAGTCTGAGGACCTA 58.445 37.037 0.00 0.00 43.05 3.08
2643 2714 9.357161 CAATACTAAAGTAGTCTGAGGACCTAT 57.643 37.037 0.00 0.00 43.05 2.57
2646 2717 8.104838 ACTAAAGTAGTCTGAGGACCTATACT 57.895 38.462 0.00 0.84 43.05 2.12
2647 2718 8.559175 ACTAAAGTAGTCTGAGGACCTATACTT 58.441 37.037 7.88 8.28 43.05 2.24
2648 2719 9.411189 CTAAAGTAGTCTGAGGACCTATACTTT 57.589 37.037 20.53 20.53 44.16 2.66
2649 2720 7.648039 AAGTAGTCTGAGGACCTATACTTTG 57.352 40.000 7.88 0.00 43.05 2.77
2650 2721 6.733509 AGTAGTCTGAGGACCTATACTTTGT 58.266 40.000 7.88 0.00 43.05 2.83
2651 2722 6.829811 AGTAGTCTGAGGACCTATACTTTGTC 59.170 42.308 7.88 0.00 43.05 3.18
2652 2723 5.833340 AGTCTGAGGACCTATACTTTGTCT 58.167 41.667 0.00 0.00 43.05 3.41
2653 2724 6.971340 AGTCTGAGGACCTATACTTTGTCTA 58.029 40.000 0.00 0.00 43.05 2.59
2654 2725 7.057894 AGTCTGAGGACCTATACTTTGTCTAG 58.942 42.308 0.00 0.00 43.05 2.43
2655 2726 5.828859 TCTGAGGACCTATACTTTGTCTAGC 59.171 44.000 0.00 0.00 0.00 3.42
2656 2727 5.516044 TGAGGACCTATACTTTGTCTAGCA 58.484 41.667 0.00 0.00 0.00 3.49
2657 2728 6.136857 TGAGGACCTATACTTTGTCTAGCAT 58.863 40.000 0.00 0.00 0.00 3.79
2658 2729 6.040955 TGAGGACCTATACTTTGTCTAGCATG 59.959 42.308 0.00 0.00 0.00 4.06
2659 2730 6.136857 AGGACCTATACTTTGTCTAGCATGA 58.863 40.000 0.00 0.00 0.00 3.07
2660 2731 6.041069 AGGACCTATACTTTGTCTAGCATGAC 59.959 42.308 0.00 2.66 37.47 3.06
2661 2732 6.183360 GGACCTATACTTTGTCTAGCATGACA 60.183 42.308 0.00 7.56 44.17 3.58
2662 2733 6.574350 ACCTATACTTTGTCTAGCATGACAC 58.426 40.000 10.64 0.00 45.32 3.67
2663 2734 6.154534 ACCTATACTTTGTCTAGCATGACACA 59.845 38.462 10.64 4.90 45.32 3.72
2664 2735 6.477033 CCTATACTTTGTCTAGCATGACACAC 59.523 42.308 10.64 0.00 45.32 3.82
2665 2736 4.342862 ACTTTGTCTAGCATGACACACT 57.657 40.909 10.64 0.00 45.32 3.55
2666 2737 4.310769 ACTTTGTCTAGCATGACACACTC 58.689 43.478 10.64 0.00 45.32 3.51
2667 2738 4.202253 ACTTTGTCTAGCATGACACACTCA 60.202 41.667 10.64 0.00 45.32 3.41
2668 2739 3.303881 TGTCTAGCATGACACACTCAC 57.696 47.619 0.00 0.00 41.43 3.51
2669 2740 2.893489 TGTCTAGCATGACACACTCACT 59.107 45.455 0.00 0.00 41.43 3.41
2670 2741 4.079253 TGTCTAGCATGACACACTCACTA 58.921 43.478 0.00 0.00 41.43 2.74
2671 2742 4.706962 TGTCTAGCATGACACACTCACTAT 59.293 41.667 0.00 0.00 41.43 2.12
2672 2743 5.885912 TGTCTAGCATGACACACTCACTATA 59.114 40.000 0.00 0.00 41.43 1.31
2673 2744 6.183360 TGTCTAGCATGACACACTCACTATAC 60.183 42.308 0.00 0.00 41.43 1.47
2674 2745 6.038825 GTCTAGCATGACACACTCACTATACT 59.961 42.308 0.00 0.00 36.97 2.12
2675 2746 5.667539 AGCATGACACACTCACTATACTT 57.332 39.130 0.00 0.00 0.00 2.24
2676 2747 6.042638 AGCATGACACACTCACTATACTTT 57.957 37.500 0.00 0.00 0.00 2.66
2677 2748 5.871524 AGCATGACACACTCACTATACTTTG 59.128 40.000 0.00 0.00 0.00 2.77
2678 2749 5.869344 GCATGACACACTCACTATACTTTGA 59.131 40.000 0.00 0.00 0.00 2.69
2679 2750 6.035435 GCATGACACACTCACTATACTTTGAG 59.965 42.308 0.00 0.00 44.19 3.02
2680 2751 6.025749 TGACACACTCACTATACTTTGAGG 57.974 41.667 3.79 0.00 43.12 3.86
2681 2752 5.773176 TGACACACTCACTATACTTTGAGGA 59.227 40.000 3.79 0.00 43.12 3.71
2682 2753 6.026947 ACACACTCACTATACTTTGAGGAC 57.973 41.667 3.79 0.00 43.12 3.85
2683 2754 5.047235 ACACACTCACTATACTTTGAGGACC 60.047 44.000 3.79 0.00 43.12 4.46
2684 2755 5.186021 CACACTCACTATACTTTGAGGACCT 59.814 44.000 0.00 0.00 43.12 3.85
2685 2756 5.186021 ACACTCACTATACTTTGAGGACCTG 59.814 44.000 0.00 0.00 43.12 4.00
2686 2757 5.419155 CACTCACTATACTTTGAGGACCTGA 59.581 44.000 0.00 0.00 43.12 3.86
2687 2758 6.017192 ACTCACTATACTTTGAGGACCTGAA 58.983 40.000 0.00 0.00 43.12 3.02
2688 2759 6.071278 ACTCACTATACTTTGAGGACCTGAAC 60.071 42.308 0.00 0.00 43.12 3.18
2689 2760 5.103000 CACTATACTTTGAGGACCTGAACG 58.897 45.833 0.00 0.00 0.00 3.95
2690 2761 5.014858 ACTATACTTTGAGGACCTGAACGA 58.985 41.667 0.00 0.00 0.00 3.85
2691 2762 2.528041 ACTTTGAGGACCTGAACGAC 57.472 50.000 0.00 0.00 0.00 4.34
2692 2763 1.269621 ACTTTGAGGACCTGAACGACG 60.270 52.381 0.00 0.00 0.00 5.12
2693 2764 1.000607 CTTTGAGGACCTGAACGACGA 60.001 52.381 0.00 0.00 0.00 4.20
2694 2765 1.254026 TTGAGGACCTGAACGACGAT 58.746 50.000 0.00 0.00 0.00 3.73
2695 2766 1.254026 TGAGGACCTGAACGACGATT 58.746 50.000 0.00 0.00 0.00 3.34
2696 2767 1.616865 TGAGGACCTGAACGACGATTT 59.383 47.619 0.00 0.00 0.00 2.17
2697 2768 2.036733 TGAGGACCTGAACGACGATTTT 59.963 45.455 0.00 0.00 0.00 1.82
2698 2769 2.666994 GAGGACCTGAACGACGATTTTC 59.333 50.000 0.00 0.00 0.00 2.29
2699 2770 2.036733 AGGACCTGAACGACGATTTTCA 59.963 45.455 0.00 0.02 0.00 2.69
2700 2771 3.000727 GGACCTGAACGACGATTTTCAT 58.999 45.455 0.00 0.00 31.41 2.57
2701 2772 4.081862 AGGACCTGAACGACGATTTTCATA 60.082 41.667 0.00 0.00 31.41 2.15
2702 2773 4.032558 GGACCTGAACGACGATTTTCATAC 59.967 45.833 0.00 0.00 31.41 2.39
2703 2774 4.817517 ACCTGAACGACGATTTTCATACT 58.182 39.130 0.00 0.00 31.41 2.12
2704 2775 4.625742 ACCTGAACGACGATTTTCATACTG 59.374 41.667 0.00 0.00 31.41 2.74
2705 2776 4.625742 CCTGAACGACGATTTTCATACTGT 59.374 41.667 0.00 0.00 31.41 3.55
2706 2777 5.444613 CCTGAACGACGATTTTCATACTGTG 60.445 44.000 0.00 0.00 31.41 3.66
2707 2778 5.224135 TGAACGACGATTTTCATACTGTGA 58.776 37.500 0.00 0.00 34.25 3.58
2708 2779 5.692654 TGAACGACGATTTTCATACTGTGAA 59.307 36.000 0.00 0.00 44.87 3.18
2709 2780 5.763444 ACGACGATTTTCATACTGTGAAG 57.237 39.130 0.00 0.00 46.85 3.02
2710 2781 5.466819 ACGACGATTTTCATACTGTGAAGA 58.533 37.500 0.00 0.00 46.85 2.87
2711 2782 5.345202 ACGACGATTTTCATACTGTGAAGAC 59.655 40.000 0.00 0.00 46.85 3.01
2712 2783 5.220228 CGACGATTTTCATACTGTGAAGACC 60.220 44.000 0.00 0.00 46.85 3.85
2713 2784 5.794894 ACGATTTTCATACTGTGAAGACCT 58.205 37.500 0.00 0.00 46.85 3.85
2714 2785 6.931838 ACGATTTTCATACTGTGAAGACCTA 58.068 36.000 0.00 0.00 46.85 3.08
2715 2786 7.556844 ACGATTTTCATACTGTGAAGACCTAT 58.443 34.615 0.00 0.00 46.85 2.57
2716 2787 7.492669 ACGATTTTCATACTGTGAAGACCTATG 59.507 37.037 0.00 0.00 46.85 2.23
2717 2788 7.492669 CGATTTTCATACTGTGAAGACCTATGT 59.507 37.037 0.00 0.00 46.85 2.29
2718 2789 7.905604 TTTTCATACTGTGAAGACCTATGTG 57.094 36.000 0.00 0.00 46.85 3.21
2719 2790 6.850752 TTCATACTGTGAAGACCTATGTGA 57.149 37.500 0.00 0.00 41.79 3.58
2720 2791 6.208988 TCATACTGTGAAGACCTATGTGAC 57.791 41.667 0.00 0.00 32.78 3.67
2721 2792 5.714806 TCATACTGTGAAGACCTATGTGACA 59.285 40.000 0.00 0.00 32.78 3.58
2722 2793 4.258702 ACTGTGAAGACCTATGTGACAC 57.741 45.455 0.00 0.00 0.00 3.67
2723 2794 3.006967 ACTGTGAAGACCTATGTGACACC 59.993 47.826 2.45 0.00 0.00 4.16
2724 2795 2.301870 TGTGAAGACCTATGTGACACCC 59.698 50.000 2.45 0.00 0.00 4.61
2725 2796 2.567615 GTGAAGACCTATGTGACACCCT 59.432 50.000 2.45 0.00 0.00 4.34
2726 2797 3.008049 GTGAAGACCTATGTGACACCCTT 59.992 47.826 2.45 0.00 0.00 3.95
2727 2798 4.222145 GTGAAGACCTATGTGACACCCTTA 59.778 45.833 2.45 0.00 0.00 2.69
2728 2799 4.841813 TGAAGACCTATGTGACACCCTTAA 59.158 41.667 2.45 0.00 0.00 1.85
2729 2800 5.308497 TGAAGACCTATGTGACACCCTTAAA 59.692 40.000 2.45 0.00 0.00 1.52
2730 2801 5.836024 AGACCTATGTGACACCCTTAAAA 57.164 39.130 2.45 0.00 0.00 1.52
2731 2802 6.388619 AGACCTATGTGACACCCTTAAAAT 57.611 37.500 2.45 0.00 0.00 1.82
2732 2803 7.504926 AGACCTATGTGACACCCTTAAAATA 57.495 36.000 2.45 0.00 0.00 1.40
2733 2804 7.565680 AGACCTATGTGACACCCTTAAAATAG 58.434 38.462 2.45 1.96 0.00 1.73
2734 2805 7.182206 AGACCTATGTGACACCCTTAAAATAGT 59.818 37.037 2.45 0.00 0.00 2.12
2735 2806 7.696017 ACCTATGTGACACCCTTAAAATAGTT 58.304 34.615 2.45 0.00 0.00 2.24
2736 2807 7.827729 ACCTATGTGACACCCTTAAAATAGTTC 59.172 37.037 2.45 0.00 0.00 3.01
2737 2808 7.827236 CCTATGTGACACCCTTAAAATAGTTCA 59.173 37.037 2.45 0.00 0.00 3.18
2738 2809 9.226606 CTATGTGACACCCTTAAAATAGTTCAA 57.773 33.333 2.45 0.00 0.00 2.69
2739 2810 7.504924 TGTGACACCCTTAAAATAGTTCAAG 57.495 36.000 2.45 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 2.322355 AGCCGAGAGACATTGATTGG 57.678 50.000 0.00 0.00 0.00 3.16
15 16 4.314740 AGATATGTTGAAGCCGAGAGAC 57.685 45.455 0.00 0.00 0.00 3.36
155 157 3.910989 ACACCTAAAAACAAAGCCCTCT 58.089 40.909 0.00 0.00 0.00 3.69
223 228 1.803519 CTTCAGAGAGCCGTCGTGC 60.804 63.158 0.00 0.00 0.00 5.34
245 250 5.112686 GGATAGAAGACGAGAACTGCATTT 58.887 41.667 0.00 0.00 0.00 2.32
258 263 2.158579 AGACGAGAGGGGGATAGAAGAC 60.159 54.545 0.00 0.00 0.00 3.01
271 277 4.679197 GCTTGATGTATTGCTAGACGAGAG 59.321 45.833 0.00 0.00 0.00 3.20
279 286 3.735746 CGACGATGCTTGATGTATTGCTA 59.264 43.478 0.00 0.00 0.00 3.49
283 290 3.384668 CTCCGACGATGCTTGATGTATT 58.615 45.455 0.00 0.00 0.00 1.89
291 298 4.514577 CGCCCTCCGACGATGCTT 62.515 66.667 0.00 0.00 40.02 3.91
366 376 8.349245 ACATGAATGTAGACGAACAAAAATCAA 58.651 29.630 0.00 0.00 39.68 2.57
367 377 7.802720 CACATGAATGTAGACGAACAAAAATCA 59.197 33.333 0.00 0.00 39.39 2.57
374 394 5.134202 AGACACATGAATGTAGACGAACA 57.866 39.130 0.00 0.00 39.39 3.18
385 405 6.375455 GGATCAAAACCTGTAGACACATGAAT 59.625 38.462 0.00 0.00 33.14 2.57
419 439 2.091277 GTCGTTGATGAAGAGAAGCGTG 59.909 50.000 0.00 0.00 0.00 5.34
436 456 4.320202 GCACACCAGAATAACAAATGTCGT 60.320 41.667 0.00 0.00 0.00 4.34
442 462 3.561143 ACCAGCACACCAGAATAACAAA 58.439 40.909 0.00 0.00 0.00 2.83
482 502 3.926616 AGTAGACCGTTGGAAACTCATG 58.073 45.455 0.00 0.00 46.99 3.07
509 529 1.199327 CGTCGGAGTGAGACAAAGCTA 59.801 52.381 0.00 0.00 38.46 3.32
547 567 2.334946 GCAAGCCGAAGACATGCCA 61.335 57.895 0.00 0.00 0.00 4.92
552 573 1.004560 CTGGAGCAAGCCGAAGACA 60.005 57.895 0.00 0.00 0.00 3.41
580 601 0.168348 CGTAGACCACCTCACGACAG 59.832 60.000 0.00 0.00 36.53 3.51
587 608 1.822990 TCCATGTTCGTAGACCACCTC 59.177 52.381 0.00 0.00 26.53 3.85
802 828 4.038883 GGTGCAAGTAATCTACCGGAGTAT 59.961 45.833 9.46 0.00 0.00 2.12
961 989 2.910544 TCCTACTTGGCCTTCACCTAA 58.089 47.619 3.32 0.00 35.26 2.69
984 1012 1.001974 TCCATCCGAAACACTCCACTG 59.998 52.381 0.00 0.00 0.00 3.66
998 1026 1.065126 CCTTCCACAACTCCTCCATCC 60.065 57.143 0.00 0.00 0.00 3.51
1273 1301 1.536709 CCTCTTGCTGTTGTTGTTGCC 60.537 52.381 0.00 0.00 0.00 4.52
1513 1547 5.063691 GCTAGCATCGAGTATATGTAGACGT 59.936 44.000 10.63 0.00 0.00 4.34
1520 1554 4.427312 TGCATGCTAGCATCGAGTATATG 58.573 43.478 27.34 15.26 40.11 1.78
1523 1557 2.930023 GCTGCATGCTAGCATCGAGTAT 60.930 50.000 27.34 2.67 44.68 2.12
1528 1562 3.727146 TGCTGCATGCTAGCATCG 58.273 55.556 29.06 21.55 45.52 3.84
1548 1582 7.759489 ACACAAGTTACACAACCAATATCAT 57.241 32.000 0.00 0.00 35.05 2.45
1576 1610 0.615331 ACGTTCCTGCATCCAGATGT 59.385 50.000 9.29 0.00 41.77 3.06
1675 1709 0.036858 GAAGTGGAGAGTGGACCTGC 60.037 60.000 0.00 0.00 0.00 4.85
1696 1730 3.429080 CTCTGCCTCTGCTCGAGCC 62.429 68.421 33.23 18.35 41.18 4.70
1934 1982 9.543018 CTAATTTTGCAACAAAGCTACTACTAC 57.457 33.333 0.00 0.00 34.99 2.73
1935 1983 8.726988 CCTAATTTTGCAACAAAGCTACTACTA 58.273 33.333 0.00 0.00 34.99 1.82
1936 1984 7.593825 CCTAATTTTGCAACAAAGCTACTACT 58.406 34.615 0.00 0.00 34.99 2.57
2065 2115 8.491152 CCTCACACAATCGATCTTTTATCATAC 58.509 37.037 0.00 0.00 0.00 2.39
2066 2116 7.171508 GCCTCACACAATCGATCTTTTATCATA 59.828 37.037 0.00 0.00 0.00 2.15
2067 2117 6.017605 GCCTCACACAATCGATCTTTTATCAT 60.018 38.462 0.00 0.00 0.00 2.45
2068 2118 5.294306 GCCTCACACAATCGATCTTTTATCA 59.706 40.000 0.00 0.00 0.00 2.15
2069 2119 5.277538 GGCCTCACACAATCGATCTTTTATC 60.278 44.000 0.00 0.00 0.00 1.75
2070 2120 4.576463 GGCCTCACACAATCGATCTTTTAT 59.424 41.667 0.00 0.00 0.00 1.40
2071 2121 3.938963 GGCCTCACACAATCGATCTTTTA 59.061 43.478 0.00 0.00 0.00 1.52
2072 2122 2.749621 GGCCTCACACAATCGATCTTTT 59.250 45.455 0.00 0.00 0.00 2.27
2081 2133 1.003355 CGGTCTGGCCTCACACAAT 60.003 57.895 3.32 0.00 34.25 2.71
2142 2203 1.664321 CGTCTTGCCCGCTAGGTAGT 61.664 60.000 0.00 0.00 38.26 2.73
2312 2381 5.070047 CACCATATTAGGAAACTAGGACCGT 59.930 44.000 0.00 0.00 45.45 4.83
2313 2382 5.070047 ACACCATATTAGGAAACTAGGACCG 59.930 44.000 0.00 0.00 45.45 4.79
2315 2384 6.885922 ACACACCATATTAGGAAACTAGGAC 58.114 40.000 0.00 0.00 45.45 3.85
2321 2390 8.691661 ATGGAATACACACCATATTAGGAAAC 57.308 34.615 0.00 0.00 43.89 2.78
2371 2442 7.107639 TCTCATCACATAAACTCGGTCAATA 57.892 36.000 0.00 0.00 0.00 1.90
2392 2463 8.818141 TCTAATGGTGTTGATTCGATATTCTC 57.182 34.615 0.00 0.00 0.00 2.87
2476 2547 9.787435 ACTTCACTCTTTACAATACCAAACATA 57.213 29.630 0.00 0.00 0.00 2.29
2477 2548 8.567948 CACTTCACTCTTTACAATACCAAACAT 58.432 33.333 0.00 0.00 0.00 2.71
2478 2549 7.468084 GCACTTCACTCTTTACAATACCAAACA 60.468 37.037 0.00 0.00 0.00 2.83
2479 2550 6.856426 GCACTTCACTCTTTACAATACCAAAC 59.144 38.462 0.00 0.00 0.00 2.93
2480 2551 6.544197 TGCACTTCACTCTTTACAATACCAAA 59.456 34.615 0.00 0.00 0.00 3.28
2481 2552 6.058833 TGCACTTCACTCTTTACAATACCAA 58.941 36.000 0.00 0.00 0.00 3.67
2482 2553 5.616270 TGCACTTCACTCTTTACAATACCA 58.384 37.500 0.00 0.00 0.00 3.25
2483 2554 6.743575 ATGCACTTCACTCTTTACAATACC 57.256 37.500 0.00 0.00 0.00 2.73
2484 2555 7.584987 ACAATGCACTTCACTCTTTACAATAC 58.415 34.615 0.00 0.00 0.00 1.89
2485 2556 7.744087 ACAATGCACTTCACTCTTTACAATA 57.256 32.000 0.00 0.00 0.00 1.90
2486 2557 6.639632 ACAATGCACTTCACTCTTTACAAT 57.360 33.333 0.00 0.00 0.00 2.71
2487 2558 6.989759 TCTACAATGCACTTCACTCTTTACAA 59.010 34.615 0.00 0.00 0.00 2.41
2488 2559 6.521162 TCTACAATGCACTTCACTCTTTACA 58.479 36.000 0.00 0.00 0.00 2.41
2489 2560 7.201565 GGATCTACAATGCACTTCACTCTTTAC 60.202 40.741 0.00 0.00 0.00 2.01
2490 2561 6.818644 GGATCTACAATGCACTTCACTCTTTA 59.181 38.462 0.00 0.00 0.00 1.85
2491 2562 5.645497 GGATCTACAATGCACTTCACTCTTT 59.355 40.000 0.00 0.00 0.00 2.52
2492 2563 5.181748 GGATCTACAATGCACTTCACTCTT 58.818 41.667 0.00 0.00 0.00 2.85
2493 2564 4.383552 GGGATCTACAATGCACTTCACTCT 60.384 45.833 0.00 0.00 0.00 3.24
2494 2565 3.873952 GGGATCTACAATGCACTTCACTC 59.126 47.826 0.00 0.00 0.00 3.51
2495 2566 3.370953 GGGGATCTACAATGCACTTCACT 60.371 47.826 0.00 0.00 0.00 3.41
2496 2567 2.945668 GGGGATCTACAATGCACTTCAC 59.054 50.000 0.00 0.00 0.00 3.18
2497 2568 2.575735 TGGGGATCTACAATGCACTTCA 59.424 45.455 0.00 0.00 0.00 3.02
2498 2569 3.281727 TGGGGATCTACAATGCACTTC 57.718 47.619 0.00 0.00 0.00 3.01
2499 2570 3.737559 TTGGGGATCTACAATGCACTT 57.262 42.857 0.00 0.00 0.00 3.16
2500 2571 3.010584 AGTTTGGGGATCTACAATGCACT 59.989 43.478 0.00 0.00 0.00 4.40
2501 2572 3.356290 AGTTTGGGGATCTACAATGCAC 58.644 45.455 0.00 0.00 0.00 4.57
2502 2573 3.737559 AGTTTGGGGATCTACAATGCA 57.262 42.857 0.00 0.00 0.00 3.96
2503 2574 6.715347 AAATAGTTTGGGGATCTACAATGC 57.285 37.500 0.00 0.00 0.00 3.56
2505 2576 9.421399 CCTTAAAATAGTTTGGGGATCTACAAT 57.579 33.333 0.00 0.00 0.00 2.71
2506 2577 7.837187 CCCTTAAAATAGTTTGGGGATCTACAA 59.163 37.037 17.83 0.00 40.57 2.41
2507 2578 7.036425 ACCCTTAAAATAGTTTGGGGATCTACA 60.036 37.037 24.94 0.00 40.57 2.74
2508 2579 7.284716 CACCCTTAAAATAGTTTGGGGATCTAC 59.715 40.741 24.94 0.00 40.57 2.59
2509 2580 7.036425 ACACCCTTAAAATAGTTTGGGGATCTA 60.036 37.037 24.94 0.00 40.57 1.98
2510 2581 6.194967 CACCCTTAAAATAGTTTGGGGATCT 58.805 40.000 24.94 8.85 40.57 2.75
2511 2582 5.955959 ACACCCTTAAAATAGTTTGGGGATC 59.044 40.000 24.94 0.00 40.57 3.36
2512 2583 5.910931 ACACCCTTAAAATAGTTTGGGGAT 58.089 37.500 24.94 14.79 40.57 3.85
2513 2584 5.162969 TGACACCCTTAAAATAGTTTGGGGA 60.163 40.000 24.94 8.59 40.57 4.81
2514 2585 5.081032 TGACACCCTTAAAATAGTTTGGGG 58.919 41.667 19.80 19.80 42.24 4.96
2515 2586 6.210584 ACATGACACCCTTAAAATAGTTTGGG 59.789 38.462 8.98 8.98 36.45 4.12
2516 2587 7.227049 ACATGACACCCTTAAAATAGTTTGG 57.773 36.000 0.00 0.00 0.00 3.28
2517 2588 8.458843 CCTACATGACACCCTTAAAATAGTTTG 58.541 37.037 0.00 0.00 0.00 2.93
2518 2589 8.168058 ACCTACATGACACCCTTAAAATAGTTT 58.832 33.333 0.00 0.00 0.00 2.66
2519 2590 7.696017 ACCTACATGACACCCTTAAAATAGTT 58.304 34.615 0.00 0.00 0.00 2.24
2520 2591 7.266905 ACCTACATGACACCCTTAAAATAGT 57.733 36.000 0.00 0.00 0.00 2.12
2521 2592 8.575649 AAACCTACATGACACCCTTAAAATAG 57.424 34.615 0.00 0.00 0.00 1.73
2522 2593 8.943594 AAAACCTACATGACACCCTTAAAATA 57.056 30.769 0.00 0.00 0.00 1.40
2523 2594 7.308951 CGAAAACCTACATGACACCCTTAAAAT 60.309 37.037 0.00 0.00 0.00 1.82
2524 2595 6.016943 CGAAAACCTACATGACACCCTTAAAA 60.017 38.462 0.00 0.00 0.00 1.52
2525 2596 5.470777 CGAAAACCTACATGACACCCTTAAA 59.529 40.000 0.00 0.00 0.00 1.52
2526 2597 4.998672 CGAAAACCTACATGACACCCTTAA 59.001 41.667 0.00 0.00 0.00 1.85
2527 2598 4.283978 TCGAAAACCTACATGACACCCTTA 59.716 41.667 0.00 0.00 0.00 2.69
2528 2599 3.071892 TCGAAAACCTACATGACACCCTT 59.928 43.478 0.00 0.00 0.00 3.95
2529 2600 2.635915 TCGAAAACCTACATGACACCCT 59.364 45.455 0.00 0.00 0.00 4.34
2530 2601 3.048337 TCGAAAACCTACATGACACCC 57.952 47.619 0.00 0.00 0.00 4.61
2531 2602 4.062991 AGTTCGAAAACCTACATGACACC 58.937 43.478 0.00 0.00 35.92 4.16
2532 2603 6.588756 TCATAGTTCGAAAACCTACATGACAC 59.411 38.462 0.00 0.00 35.92 3.67
2533 2604 6.693466 TCATAGTTCGAAAACCTACATGACA 58.307 36.000 0.00 0.00 35.92 3.58
2534 2605 7.591006 TTCATAGTTCGAAAACCTACATGAC 57.409 36.000 0.00 0.00 35.92 3.06
2535 2606 8.610248 TTTTCATAGTTCGAAAACCTACATGA 57.390 30.769 0.00 0.00 37.42 3.07
2536 2607 9.490663 GATTTTCATAGTTCGAAAACCTACATG 57.509 33.333 0.00 0.00 43.17 3.21
2537 2608 8.388103 CGATTTTCATAGTTCGAAAACCTACAT 58.612 33.333 0.00 0.00 43.17 2.29
2538 2609 7.385752 ACGATTTTCATAGTTCGAAAACCTACA 59.614 33.333 0.00 0.00 43.17 2.74
2539 2610 7.736447 ACGATTTTCATAGTTCGAAAACCTAC 58.264 34.615 0.00 0.00 43.17 3.18
2540 2611 7.599621 TGACGATTTTCATAGTTCGAAAACCTA 59.400 33.333 0.00 0.00 43.17 3.08
2541 2612 6.425721 TGACGATTTTCATAGTTCGAAAACCT 59.574 34.615 0.00 0.00 43.17 3.50
2542 2613 6.595794 TGACGATTTTCATAGTTCGAAAACC 58.404 36.000 0.00 0.00 43.17 3.27
2543 2614 8.169268 AGATGACGATTTTCATAGTTCGAAAAC 58.831 33.333 0.00 0.00 43.17 2.43
2544 2615 8.251750 AGATGACGATTTTCATAGTTCGAAAA 57.748 30.769 0.00 0.00 44.15 2.29
2545 2616 7.827819 AGATGACGATTTTCATAGTTCGAAA 57.172 32.000 0.00 0.00 36.30 3.46
2546 2617 7.648112 CCTAGATGACGATTTTCATAGTTCGAA 59.352 37.037 0.00 0.00 36.30 3.71
2547 2618 7.139392 CCTAGATGACGATTTTCATAGTTCGA 58.861 38.462 0.00 0.00 36.30 3.71
2548 2619 6.918569 ACCTAGATGACGATTTTCATAGTTCG 59.081 38.462 0.00 0.00 36.30 3.95
2549 2620 7.382759 GGACCTAGATGACGATTTTCATAGTTC 59.617 40.741 0.00 0.00 36.30 3.01
2550 2621 7.070074 AGGACCTAGATGACGATTTTCATAGTT 59.930 37.037 0.00 0.00 36.30 2.24
2551 2622 6.551601 AGGACCTAGATGACGATTTTCATAGT 59.448 38.462 0.00 0.00 36.30 2.12
2552 2623 6.987386 AGGACCTAGATGACGATTTTCATAG 58.013 40.000 0.00 0.00 36.30 2.23
2553 2624 6.978674 AGGACCTAGATGACGATTTTCATA 57.021 37.500 0.00 0.00 36.30 2.15
2554 2625 5.878406 AGGACCTAGATGACGATTTTCAT 57.122 39.130 0.00 0.00 39.02 2.57
2555 2626 5.677319 AAGGACCTAGATGACGATTTTCA 57.323 39.130 0.00 0.00 0.00 2.69
2556 2627 7.764901 ACTTTAAGGACCTAGATGACGATTTTC 59.235 37.037 0.00 0.00 0.00 2.29
2557 2628 7.549488 CACTTTAAGGACCTAGATGACGATTTT 59.451 37.037 0.00 0.00 0.00 1.82
2558 2629 7.042335 CACTTTAAGGACCTAGATGACGATTT 58.958 38.462 0.00 0.00 0.00 2.17
2559 2630 6.154706 ACACTTTAAGGACCTAGATGACGATT 59.845 38.462 0.00 0.00 0.00 3.34
2560 2631 5.657302 ACACTTTAAGGACCTAGATGACGAT 59.343 40.000 0.00 0.00 0.00 3.73
2561 2632 5.014858 ACACTTTAAGGACCTAGATGACGA 58.985 41.667 0.00 0.00 0.00 4.20
2562 2633 5.326200 ACACTTTAAGGACCTAGATGACG 57.674 43.478 0.00 0.00 0.00 4.35
2567 2638 9.317827 ACACTTATTACACTTTAAGGACCTAGA 57.682 33.333 0.00 0.00 31.15 2.43
2568 2639 9.939802 AACACTTATTACACTTTAAGGACCTAG 57.060 33.333 0.00 0.00 31.15 3.02
2570 2641 9.281371 GAAACACTTATTACACTTTAAGGACCT 57.719 33.333 0.00 0.00 31.15 3.85
2571 2642 9.059260 TGAAACACTTATTACACTTTAAGGACC 57.941 33.333 0.00 0.00 31.15 4.46
2577 2648 9.226606 CCTGGATGAAACACTTATTACACTTTA 57.773 33.333 0.00 0.00 0.00 1.85
2578 2649 7.724061 ACCTGGATGAAACACTTATTACACTTT 59.276 33.333 0.00 0.00 0.00 2.66
2579 2650 7.231467 ACCTGGATGAAACACTTATTACACTT 58.769 34.615 0.00 0.00 0.00 3.16
2580 2651 6.779860 ACCTGGATGAAACACTTATTACACT 58.220 36.000 0.00 0.00 0.00 3.55
2581 2652 6.093633 GGACCTGGATGAAACACTTATTACAC 59.906 42.308 0.00 0.00 0.00 2.90
2582 2653 6.177610 GGACCTGGATGAAACACTTATTACA 58.822 40.000 0.00 0.00 0.00 2.41
2583 2654 6.177610 TGGACCTGGATGAAACACTTATTAC 58.822 40.000 0.00 0.00 0.00 1.89
2584 2655 6.214615 TCTGGACCTGGATGAAACACTTATTA 59.785 38.462 0.00 0.00 0.00 0.98
2585 2656 5.014123 TCTGGACCTGGATGAAACACTTATT 59.986 40.000 0.00 0.00 0.00 1.40
2586 2657 4.536090 TCTGGACCTGGATGAAACACTTAT 59.464 41.667 0.00 0.00 0.00 1.73
2587 2658 3.907474 TCTGGACCTGGATGAAACACTTA 59.093 43.478 0.00 0.00 0.00 2.24
2588 2659 2.711009 TCTGGACCTGGATGAAACACTT 59.289 45.455 0.00 0.00 0.00 3.16
2589 2660 2.338809 TCTGGACCTGGATGAAACACT 58.661 47.619 0.00 0.00 0.00 3.55
2590 2661 2.859165 TCTGGACCTGGATGAAACAC 57.141 50.000 0.00 0.00 0.00 3.32
2591 2662 3.330405 TGATTCTGGACCTGGATGAAACA 59.670 43.478 0.00 1.72 0.00 2.83
2592 2663 3.944015 CTGATTCTGGACCTGGATGAAAC 59.056 47.826 0.00 0.00 0.00 2.78
2593 2664 3.588842 ACTGATTCTGGACCTGGATGAAA 59.411 43.478 0.00 0.00 0.00 2.69
2594 2665 3.184628 ACTGATTCTGGACCTGGATGAA 58.815 45.455 0.00 0.00 0.00 2.57
2595 2666 2.837947 ACTGATTCTGGACCTGGATGA 58.162 47.619 0.00 0.00 0.00 2.92
2596 2667 3.054875 TGAACTGATTCTGGACCTGGATG 60.055 47.826 0.00 0.00 35.69 3.51
2597 2668 3.184628 TGAACTGATTCTGGACCTGGAT 58.815 45.455 0.00 0.00 35.69 3.41
2598 2669 2.619931 TGAACTGATTCTGGACCTGGA 58.380 47.619 0.00 0.00 35.69 3.86
2599 2670 3.423539 TTGAACTGATTCTGGACCTGG 57.576 47.619 0.00 0.00 35.69 4.45
2600 2671 5.738909 AGTATTGAACTGATTCTGGACCTG 58.261 41.667 0.00 0.00 36.93 4.00
2601 2672 7.496346 TTAGTATTGAACTGATTCTGGACCT 57.504 36.000 0.00 0.00 39.39 3.85
2602 2673 7.824779 ACTTTAGTATTGAACTGATTCTGGACC 59.175 37.037 0.00 0.00 39.39 4.46
2603 2674 8.779354 ACTTTAGTATTGAACTGATTCTGGAC 57.221 34.615 0.00 0.00 39.39 4.02
2605 2676 9.877178 ACTACTTTAGTATTGAACTGATTCTGG 57.123 33.333 0.00 0.00 39.39 3.86
2611 2682 8.740906 CCTCAGACTACTTTAGTATTGAACTGA 58.259 37.037 0.00 0.00 39.59 3.41
2612 2683 8.740906 TCCTCAGACTACTTTAGTATTGAACTG 58.259 37.037 0.00 0.00 39.59 3.16
2613 2684 8.741841 GTCCTCAGACTACTTTAGTATTGAACT 58.258 37.037 0.00 0.00 39.59 3.01
2614 2685 7.975058 GGTCCTCAGACTACTTTAGTATTGAAC 59.025 40.741 0.00 0.00 43.05 3.18
2615 2686 7.894364 AGGTCCTCAGACTACTTTAGTATTGAA 59.106 37.037 0.00 0.00 43.05 2.69
2616 2687 7.411808 AGGTCCTCAGACTACTTTAGTATTGA 58.588 38.462 0.00 0.00 43.05 2.57
2617 2688 7.648039 AGGTCCTCAGACTACTTTAGTATTG 57.352 40.000 0.00 0.00 43.05 1.90
2620 2691 9.223291 AGTATAGGTCCTCAGACTACTTTAGTA 57.777 37.037 0.00 0.00 43.05 1.82
2621 2692 8.104838 AGTATAGGTCCTCAGACTACTTTAGT 57.895 38.462 0.00 0.00 43.05 2.24
2622 2693 8.983702 AAGTATAGGTCCTCAGACTACTTTAG 57.016 38.462 0.00 0.00 37.85 1.85
2623 2694 9.186837 CAAAGTATAGGTCCTCAGACTACTTTA 57.813 37.037 13.93 0.00 43.05 1.85
2624 2695 7.674772 ACAAAGTATAGGTCCTCAGACTACTTT 59.325 37.037 0.00 6.23 44.30 2.66
2625 2696 7.183460 ACAAAGTATAGGTCCTCAGACTACTT 58.817 38.462 0.00 0.32 40.49 2.24
2626 2697 6.733509 ACAAAGTATAGGTCCTCAGACTACT 58.266 40.000 0.00 0.00 43.05 2.57
2627 2698 6.829811 AGACAAAGTATAGGTCCTCAGACTAC 59.170 42.308 0.00 0.00 43.05 2.73
2628 2699 6.971340 AGACAAAGTATAGGTCCTCAGACTA 58.029 40.000 0.00 0.00 43.05 2.59
2629 2700 5.833340 AGACAAAGTATAGGTCCTCAGACT 58.167 41.667 0.00 0.00 43.05 3.24
2630 2701 6.238814 GCTAGACAAAGTATAGGTCCTCAGAC 60.239 46.154 0.00 0.00 42.73 3.51
2631 2702 5.828859 GCTAGACAAAGTATAGGTCCTCAGA 59.171 44.000 0.00 0.00 29.26 3.27
2632 2703 5.594725 TGCTAGACAAAGTATAGGTCCTCAG 59.405 44.000 0.00 0.00 29.26 3.35
2633 2704 5.516044 TGCTAGACAAAGTATAGGTCCTCA 58.484 41.667 0.00 0.00 29.26 3.86
2634 2705 6.265649 TCATGCTAGACAAAGTATAGGTCCTC 59.734 42.308 0.00 0.00 29.26 3.71
2635 2706 6.041069 GTCATGCTAGACAAAGTATAGGTCCT 59.959 42.308 0.00 0.00 38.40 3.85
2636 2707 6.183360 TGTCATGCTAGACAAAGTATAGGTCC 60.183 42.308 8.96 0.00 44.92 4.46
2637 2708 6.806751 TGTCATGCTAGACAAAGTATAGGTC 58.193 40.000 8.96 0.00 44.92 3.85
2638 2709 6.791867 TGTCATGCTAGACAAAGTATAGGT 57.208 37.500 8.96 0.00 44.92 3.08
2648 2719 2.893489 AGTGAGTGTGTCATGCTAGACA 59.107 45.455 7.56 7.56 45.64 3.41
2649 2720 3.584406 AGTGAGTGTGTCATGCTAGAC 57.416 47.619 0.00 2.66 37.56 2.59
2650 2721 6.122964 AGTATAGTGAGTGTGTCATGCTAGA 58.877 40.000 0.00 0.00 37.56 2.43
2651 2722 6.384258 AGTATAGTGAGTGTGTCATGCTAG 57.616 41.667 0.00 0.00 37.56 3.42
2652 2723 6.775594 AAGTATAGTGAGTGTGTCATGCTA 57.224 37.500 0.00 0.00 37.56 3.49
2653 2724 5.667539 AAGTATAGTGAGTGTGTCATGCT 57.332 39.130 0.00 0.00 37.56 3.79
2654 2725 5.869344 TCAAAGTATAGTGAGTGTGTCATGC 59.131 40.000 0.00 0.00 37.56 4.06
2655 2726 6.533012 CCTCAAAGTATAGTGAGTGTGTCATG 59.467 42.308 7.07 0.00 39.76 3.07
2656 2727 6.437477 TCCTCAAAGTATAGTGAGTGTGTCAT 59.563 38.462 7.07 0.00 39.76 3.06
2657 2728 5.773176 TCCTCAAAGTATAGTGAGTGTGTCA 59.227 40.000 7.07 0.00 39.76 3.58
2658 2729 6.094061 GTCCTCAAAGTATAGTGAGTGTGTC 58.906 44.000 7.07 0.00 39.76 3.67
2659 2730 5.047235 GGTCCTCAAAGTATAGTGAGTGTGT 60.047 44.000 7.07 0.00 39.76 3.72
2660 2731 5.186021 AGGTCCTCAAAGTATAGTGAGTGTG 59.814 44.000 7.07 0.00 39.76 3.82
2661 2732 5.186021 CAGGTCCTCAAAGTATAGTGAGTGT 59.814 44.000 0.00 0.00 39.76 3.55
2662 2733 5.419155 TCAGGTCCTCAAAGTATAGTGAGTG 59.581 44.000 0.00 1.20 39.76 3.51
2663 2734 5.580998 TCAGGTCCTCAAAGTATAGTGAGT 58.419 41.667 0.00 0.00 39.76 3.41
2664 2735 6.334202 GTTCAGGTCCTCAAAGTATAGTGAG 58.666 44.000 0.00 0.00 40.84 3.51
2665 2736 5.105877 CGTTCAGGTCCTCAAAGTATAGTGA 60.106 44.000 0.00 0.00 0.00 3.41
2666 2737 5.103000 CGTTCAGGTCCTCAAAGTATAGTG 58.897 45.833 0.00 0.00 0.00 2.74
2667 2738 5.014858 TCGTTCAGGTCCTCAAAGTATAGT 58.985 41.667 0.00 0.00 0.00 2.12
2668 2739 5.341617 GTCGTTCAGGTCCTCAAAGTATAG 58.658 45.833 0.00 0.00 0.00 1.31
2669 2740 4.142534 CGTCGTTCAGGTCCTCAAAGTATA 60.143 45.833 0.00 0.00 0.00 1.47
2670 2741 3.367087 CGTCGTTCAGGTCCTCAAAGTAT 60.367 47.826 0.00 0.00 0.00 2.12
2671 2742 2.030540 CGTCGTTCAGGTCCTCAAAGTA 60.031 50.000 0.00 0.00 0.00 2.24
2672 2743 1.269621 CGTCGTTCAGGTCCTCAAAGT 60.270 52.381 0.00 0.00 0.00 2.66
2673 2744 1.000607 TCGTCGTTCAGGTCCTCAAAG 60.001 52.381 0.00 0.00 0.00 2.77
2674 2745 1.034356 TCGTCGTTCAGGTCCTCAAA 58.966 50.000 0.00 0.00 0.00 2.69
2675 2746 1.254026 ATCGTCGTTCAGGTCCTCAA 58.746 50.000 0.00 0.00 0.00 3.02
2676 2747 1.254026 AATCGTCGTTCAGGTCCTCA 58.746 50.000 0.00 0.00 0.00 3.86
2677 2748 2.365408 AAATCGTCGTTCAGGTCCTC 57.635 50.000 0.00 0.00 0.00 3.71
2678 2749 2.036733 TGAAAATCGTCGTTCAGGTCCT 59.963 45.455 0.00 0.00 30.41 3.85
2679 2750 2.409975 TGAAAATCGTCGTTCAGGTCC 58.590 47.619 0.00 0.00 30.41 4.46
2680 2751 4.863131 AGTATGAAAATCGTCGTTCAGGTC 59.137 41.667 3.58 0.00 37.19 3.85
2681 2752 4.625742 CAGTATGAAAATCGTCGTTCAGGT 59.374 41.667 3.58 0.00 39.69 4.00
2682 2753 4.625742 ACAGTATGAAAATCGTCGTTCAGG 59.374 41.667 3.58 0.00 39.69 3.86
2683 2754 5.344933 TCACAGTATGAAAATCGTCGTTCAG 59.655 40.000 3.58 0.00 39.69 3.02
2684 2755 5.224135 TCACAGTATGAAAATCGTCGTTCA 58.776 37.500 0.00 0.00 39.69 3.18
2685 2756 5.756950 TCACAGTATGAAAATCGTCGTTC 57.243 39.130 0.00 0.00 39.69 3.95
2686 2757 5.924254 TCTTCACAGTATGAAAATCGTCGTT 59.076 36.000 0.00 0.00 46.80 3.85
2687 2758 5.345202 GTCTTCACAGTATGAAAATCGTCGT 59.655 40.000 0.00 0.00 46.80 4.34
2688 2759 5.220228 GGTCTTCACAGTATGAAAATCGTCG 60.220 44.000 0.00 0.00 46.80 5.12
2689 2760 5.869888 AGGTCTTCACAGTATGAAAATCGTC 59.130 40.000 0.00 0.00 46.80 4.20
2690 2761 5.794894 AGGTCTTCACAGTATGAAAATCGT 58.205 37.500 0.00 0.00 46.80 3.73
2691 2762 7.492669 ACATAGGTCTTCACAGTATGAAAATCG 59.507 37.037 0.00 0.00 46.80 3.34
2692 2763 8.607459 CACATAGGTCTTCACAGTATGAAAATC 58.393 37.037 0.00 0.00 46.80 2.17
2693 2764 8.321353 TCACATAGGTCTTCACAGTATGAAAAT 58.679 33.333 0.00 0.00 46.80 1.82
2694 2765 7.602644 GTCACATAGGTCTTCACAGTATGAAAA 59.397 37.037 0.00 0.00 46.80 2.29
2695 2766 7.097192 GTCACATAGGTCTTCACAGTATGAAA 58.903 38.462 0.00 0.00 46.80 2.69
2696 2767 6.210584 TGTCACATAGGTCTTCACAGTATGAA 59.789 38.462 0.00 0.00 45.39 2.57
2697 2768 5.714806 TGTCACATAGGTCTTCACAGTATGA 59.285 40.000 0.00 0.00 39.69 2.15
2698 2769 5.807520 GTGTCACATAGGTCTTCACAGTATG 59.192 44.000 0.00 0.00 46.00 2.39
2699 2770 5.105310 GGTGTCACATAGGTCTTCACAGTAT 60.105 44.000 5.12 0.00 0.00 2.12
2700 2771 4.219944 GGTGTCACATAGGTCTTCACAGTA 59.780 45.833 5.12 0.00 0.00 2.74
2701 2772 3.006967 GGTGTCACATAGGTCTTCACAGT 59.993 47.826 5.12 0.00 0.00 3.55
2702 2773 3.589988 GGTGTCACATAGGTCTTCACAG 58.410 50.000 5.12 0.00 0.00 3.66
2703 2774 2.301870 GGGTGTCACATAGGTCTTCACA 59.698 50.000 5.12 0.00 0.00 3.58
2704 2775 2.567615 AGGGTGTCACATAGGTCTTCAC 59.432 50.000 5.12 0.00 0.00 3.18
2705 2776 2.902608 AGGGTGTCACATAGGTCTTCA 58.097 47.619 5.12 0.00 0.00 3.02
2706 2777 3.983044 AAGGGTGTCACATAGGTCTTC 57.017 47.619 5.12 0.00 0.00 2.87
2707 2778 5.836024 TTTAAGGGTGTCACATAGGTCTT 57.164 39.130 5.12 1.71 0.00 3.01
2708 2779 5.836024 TTTTAAGGGTGTCACATAGGTCT 57.164 39.130 5.12 0.00 0.00 3.85
2709 2780 7.336396 ACTATTTTAAGGGTGTCACATAGGTC 58.664 38.462 5.12 0.00 0.00 3.85
2710 2781 7.266905 ACTATTTTAAGGGTGTCACATAGGT 57.733 36.000 5.12 0.00 0.00 3.08
2711 2782 7.827236 TGAACTATTTTAAGGGTGTCACATAGG 59.173 37.037 5.12 0.00 0.00 2.57
2712 2783 8.786826 TGAACTATTTTAAGGGTGTCACATAG 57.213 34.615 5.12 4.30 0.00 2.23
2713 2784 9.226606 CTTGAACTATTTTAAGGGTGTCACATA 57.773 33.333 5.12 0.00 0.00 2.29
2714 2785 8.110860 CTTGAACTATTTTAAGGGTGTCACAT 57.889 34.615 5.12 0.00 0.00 3.21
2715 2786 7.504924 CTTGAACTATTTTAAGGGTGTCACA 57.495 36.000 5.12 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.