>input_sequence_70144
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-------------------------------------------------------------------ATGGAGGAGTTGT
GGAAGGACATGTCCCTGCCTTCCACCCCGGCCGCGCTGCAGTCGTACCACATCCGCTCTCCAGCCGCCGCCGTCTACCCC
CAGGACTACCTCGCCGGCCCGGTGCCGCTGCGGCGGGGGGCTCCTTACACGGCGCTCACCCTCAGCTCCTCCGTCCAGTT
CACCTTCCACGGTGGTGGTCCCGGTTCCGGTACGCCCTCCGGCTCCAGCTCCTGCAATGACTACCCCTTTGGCTTCCCCT
CCGCCTCCGGAGCCAACAGCGGCAACAACAACAGCAAGAGGGTGCAGGTCGATGCTCCGGCGGCGGTCGACCGTCAGCGC
CGGATGATAAAGAACCGGGAGTCGGCGGCCCGGTCGCGGGCGCGGAAGCAGGCCTACACCAACGAGCTGGAGATGGAGCT
GGCGCAGCTGCGCAGGGAGAACCAGATGCTCATCAAGCGCGAGCAGGACTTCATCAAAGTA------CGCGCATATTCAC
CATGGCCATTTGTAGTTTAACGGATTACGTCTACATATACTCGATGCTAGCATGCAGCATTATGATATTGGTTGTGTAAC
TTGTGTTGCACATCTGGATGCAGGAACGTTCGGCGACGGCGGCGCAGGCGGCAGTGCTCCCCGACTGCAGCAGCAGCAGA
AGCAACGGCGGCGGCAGGAGCAGGTCCAGCAGGTCCACTCTCCACTTCGGGCTCGAGCAGAGGCAGAGGTGCCGCTCCGC
CCCTGCGCCATGA-------------------------------------------------------------------
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>chr5A_1_TraesCS5A01G508600
CCTAATCCAATCAATGTCTCTCGGCTTCAACATATCTTGAGCGAACAAACACG-TGTTAGGGTTTCCCGTGCCTCCGTCG
GCATCGCCGCCGATCTGCCTAGTCTCCTTTGGCCTTAGGGCCATGGAGACACGGTTGATCCCGGCCATTGACGGTGAGAG
GGCTTTGTTTTTAGGTG---TTTTTTTGAATTTGGTTAGGATTTGTGTCCTGCTCAGGATGCCAAGTGCACGACGGCTCT
CTGAAGATGAAATGCAGTTCTCGTCTTCTATCC-CCC-TCTCGTCTAGCAATACATCAAGCATCGTCGGAGGGCGTGTGG
AAGTGTCTTTGGCAG--ATCTCGCGAGATTCGA-CGGTGTTTGTCTTTGATGGATTTG----------ATTTTTGTTCGT
CTACATTCATGTGTCTACAGGTTTTGATCCTTCTGATCCACGCTTCTCTTCATCAACGACATTTGTTATTCTGGTGTGCT
GGTCCTGAGGGGCATTAGCACCATGAGTTTCCAACGGTCTACTATGACTAGCTTTGTCTCACTCCGACGAGGGAGGGGGG
TGATGGT-GGCATGTCTTCGGCTTGCTCCAGTGCTTGTAGCTGTCGTGAGGTGGTCTACGAACATGGATGTAATCTCTAT
TATCTTTGGTGTTTTTTGTACTGTCTTGACAGCTGATGAATAGATCGAAAGTTATTCCAGAAAAAGATCACTA-TGATAC
AGAAATACAAATATAGAGAAATGCCGAGAAGAATCAAACGCACACATACATG----CATGCATGCGTAGCCAGATATGAC
AAACAAGCAACACGCCATTGAAGCATAATACTCCGGTAGATTACTTGCACCCACACACAC--CAGGCCACCCATGGGTGG
ACAGGGCGTTGCGTTTGTGGCTATAAACTAAGAGAAGAGAGCCACAAGGAGCATGCCATATATACTTAGCGTTACGCGTG
TGCCAGCGTCTCTCACCTTGCACACATATTAGGTGAAGGCCAAGTAGGATCCAGTGGAGTGTTTCGGATGGAGGAGTTGT
GGAAGGACATGTCCCTGCCTTCCACCCCGGCCGCGCTGCAGTCGTACCACATCCGCTCTCCAGCCGCCGCCGTCTACCCC
CAGGACTACCTCGCCGGCCCGGTGCCGCTGCGGCGGGGGGCTCCTTACACGGCGCTCACCCTCAGCTCCTCCGTCCAGTT
CACCTTCCACGGTGGTGGTCCCGGTTCCGGTACGCCCTCCGGCTCCAGCTCCTGCAATGACTACCCCTTTGGCTTCCCCT
CCGCCTCCGGAGCCAACAGCGGCAACAACAACAGCAAGAGGGTGCAGGTCGATGCTCCGGCGGCGGTCGACCGTCAGCGC
CGGATGATAAAGAACCGGGAGTCGGCGGCCCGGTCGCGGGCGCGGAAGCAGGCCTACACCAACGAGCTGGAGATGGAGCT
GGCGCAGCTGCGCAGGGAGAACCAGATGCTCATCAAGCGCGAGCAGGACTTCATCAAAGTA------CGCGCATATTCAC
CATGGCCATTTGTAGTTTAACGGATTACGTCTACATATACTCGATGCTAGCATGCAGCATTATGATATTGGTTGTGTAAC
TTGTGTTGCACATCTGGATGCAGGAACGTTCGGCGACGGCGGCGCAGGCGGCAGTGCTCCCCGACTGCAGCAGCAGCAGA
AGCAACGGCGGCGGCAGGAGCAGGTCCAGCAGGTCCACTCTCCACTTCGGGCTCGAGCAGAGGCAGAGGTGCCGCTCCGC
CCCTGCGCCATGATCG---GCGGCGGCCATGGTTCATCGACTGCAGTAGCTTAATTATTCCACTAATTAATTAGTTATA-
-------TACAAGACTAC-CAATGCATGTGCTTGCTACTTA-TACATGATTAATTGTCCAAAGCTAGCTCTTGGTGATGG
ACATATCAATATTAA-TGGGAGTCGTGAACTATGCATGTGCATATGTAATCTAGCTAGTACGTAGTAGTAGCTTTGTTGC
AAAATTAGGCTAGTAT--GTAATATATCTCCTTAATATTGAGGTGATGGACGAATCAATCGATCCAGCTATGTAAATTAA
CGGCATTTCCGTCACAAGTAGGTGATGGCTGATTGTATGATA--AAAGATCGATTGTGTGAG---GCCAGACCGTA----
--CGTGGATTCGATTTCCTTTTGTTCCTGCTTTATATGTTGTACTACCTAGCGGGCAAGACGTGGAATGGAATCCTATGT
AATATATGTCCCCACCGGCGAGCACCACGCATGCACCACAAACA--------TAGTATTCACCGTTAATTTCGTTAGCTA
CTGTATCTATGTGTGCATGTTTATGGACGACAATGCTATGCTAATCTGGTGAGAACGGACACGGTCCTAGTTTCCTAATA
TGGTGTGTATTCCATCTTTTTAAAGTTAAA--CTTTATCAATATTGACCGAGTTTATGTGATGAGAATATCGAATCAACA
CCATTAGATTAATCATGAAATCTATATTCATATTAGATTAATCATGAAATCTATATTCATATGGTATATGTTTGGTATTG
TAAAGAGTGAAGTGCATTGTAGATCCCCAAACTATTTTAAGGGTGTCATGTAGGTTTTCGAACTATGAAAATCGTCATCT
AGGTCCTTAAAGTGTAATAAGTGTTTCATCCAGGTCCAGAATCAGTTCAATACTAAAGTAGTCTGAGGACCTATACTTTG
TCTAGCATGACACACTCACTATACTTTGAGGACCTGAACGACGATTTTCATACTGTGAAGACCTATGTGACACCCTTAAA
ATAGTTCAAG
>chr4D_1
CCTAATACAATCAATATCTCTCGGCTTCAACATATCTTGAGCGAACAAACATTTTGTTAGGGTTTCCCTTGCCTCCACCG
GCGTCGTCACCGATCAGCCTAGTCTCCTTTGGCCTTAGGGCCATGGAGACACGGTTGATCCCAGCCATTGATGGTGTAAG
GGCTTTGTTTTTAGGTG---TTTTTTT-AATTTGGTTAAGGTTTGTGTCCTACTCAGGATGCCAAGGCCATGACGGTTCT
CTGAAGATGGAATGCAGTTCTCCCCTTCTATCCTCCG-TCTCGTCCAGCGGTGCATCCAGCATCGTCGGAGGGCGTGTGA
AAGTGTCTTTGGCAG--ATCTCGCGAGATTCGA-CGGTGTTTGTCTTCGATGGATCCG----------ATTTTCGTTTGT
CTACGTTCATGTGTCTACAGGTTTTGTTCCTTCTGATCTACGCTTCTCTTCATCAGCGACAATTGTTATTCTGGTGTGCT
GGTCCTGAGGGGCAT-AGCACGATGAGTTTCCAACGGTCTACTATGACAAGCTTTGTCTCACTCCGGCGAGGGAGGGGGA
TGATGGC-GGCACGTCTTCGGCTTCCTCCAGTGCTTGTAGTTATCGTTAGGCTGTCTACGGACATGGATGTAATCTCTGT
TATCTTTGGTGTTCTTTGTACTGTCTTGACAACTGATGAATAGATCAAAAGTTATTCCA-AAAAAAATCACTA-CGATAC
AGAAATACAAATATAGAGAAATGCCGAGAAGAATCAAACGCACACATACATG----CATGCATGCGTAGCCAGATATGAC
AAACAAGCAACACGCCATTGAAGCATAGTACTCCGGTAGATTACTTGCACCCACACACACACCAGGCCACCCATGGGTGG
ACAGGGCGTTGCGTTTGTGGCTATAAACTAAGAGAAGAGAGCCACAAGGAGCATGCCATATATGCTTAGCGTTACGCGTG
TGCCAGCGTGTCTCACCTTGCACACATACTAGGTGAAGGCCAAGTAGGATCGAGTGGAGTGTTTCCGATGGAGGAGTTGT
GGAAGGACATGTCCCTGCCTTCCACCCCGGCCGCGCTGCAGTCGTACCACATCCGCTCTCCGGCCGCCGCCGTCTACCCC
CAGGACTACCTCGCCGGCCCGGTGCCACTGCGGCGGGGGCATCCTTACACGGCGCTCACCCTCAGCTCCTCCGTCCAGTT
CACCTTCCAGGGCGGTGGCTCCGGTTCCGGTACGCCCTCCGGCTCCAGCTCCTGCAGTGACTACCCCTTTGGCTTCCCCT
CCGCCTCCGGAGCCAACAGCAGCAACAACAACAGCAAGAGGGTGCAGGTCGATGCTCCGGCGGCGGTCGACCGTCAGCGC
CGGATGATCAAGAACCGGGAGTCGGCGGCCCGGTCGCGGGCGCGGAAGCAGGCCTACACCAACGAGCTGGAGATGGAGCT
GGCGCAGCTGCGCAGGGAGAACCAGATGCTCATCAAGCGCGAGCAGGACTTCATCAAAGTA------CGCGCATATTCAC
CATGGCCATTTGTAGTTTAACGGATTGCGTCTATATGTACTTGAAGCTAGCATGCAACATT-------------------
--------------TGGATGCAGGAACGTTCGGCGACGGCGGT---------AGTCCTCCCCGACTGCAGAAGCAGCAGC
AGCAACGGCGGCGGCAGGAGCAGGTCCAACAGGTCCACTCTCCACTTCGAGCTCGAGCAGAGGCAGAGGTGCCGCTCCGC
CCCTGCGCCATGATCG---GCGACGGCCATGGTCCATCGACCGCAGCAGCTTAATTA-TCCACTAATTAATTAGTTATA-
-------TACAAGACTACGCAATGCATGTGCTTGCTACTTAC---ATGGTTGATTGTCC-AAGCTAGCTCTAGGTGATGG
ACATATCGATATTAA-TTGGAGTCGTGAACTATGCATGTGCATGTGTAATCTAGCTAGTAC---GTAGTAGCTTTGTTGC
AAAGTTAGGCTAGTATATGTAATATATCTCCTTAATATTGAGGTGATGGACGAATCAATCAATCGAGCTATGCAAATTAA
CGGCATTTCCGTCACAAGT----GATGGCTGATGCATGATG-ATAAAGATCGGTTGTGTCAG---CCCAGACCGCAAGTG
GTCGTGGATTCGATTTCCTTTTCTTCCTGCTTTATATGTTGT----CCTAGCGGGCAGGACGTGGAATGGAATCCTATGT
A---TATCTCCCCACCGGCCAACAGCACGTACGCATGCAGCACAAATATGGTTAGTATTCACCGTTAATTTCG-------
------CTATGTGTGCATGTTTATGGACGGCAATGCTATGCTAATCTGGCGAGAACGGACGTGTTCCTAATATCCTAATA
TCGCGTGTATTCCATTTCTTAAAAGTTACAAATTTTATCAACATTGACCAAGTTTATGTGATAAGAATATCGAATCAACA
CCATTCGATTAATCATGAAATCTGTATTCATAT-----------------------------------------------
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>chr4B_1
CCTGATACAATCAATATCTCTCGGCTTTAACATATCTCGAGCAAACAAACATCC-GTTAGGATTTCCCTTGCCTTGATCG
ACATCGCCGCCGATCTGTTTAGTCTCCTGTGGCCTTAGGGCCATGGAGGCACGGTGGATCCTAGCCCTTGACGGCGCGAG
GGCTTTGTTTTTAGGCA--TTTTTTTT-TATTTGGTTAGGGTTTGTGTCCTACTCAGGAAGTCAAGTCAACGAAGTCTCT
CTGAAGATGGAATGCAGTTGTCCCCTTCTATCT-CCTATCCCGTTCGGCGGTGCATCTGGCGTTGTCGGAGGGCATGTGG
AAGTGTCTCTGGCAG--ATC-CGCAAGATTCGG-CAGTGTTTGTCTTCGCTAGATCCGCTTGGATCTCATTTTCGTTCGT
CTATGTTTATGTGTCTACAGATTTTGATCATTTTGATCTACACTTCTCTTTATCAGTGATGATTGTTGTTCTGGTGCGCT
GGTCTTGAGGGGTATTAGCATGATGAGTTTCCAACTGTCTACTGTGACAAGCTTTGTCTCACTCCGGCGAGGGAGGGGGT
AAC-GGC-GGTGCGCCGTTGGCTTTCTCCAATACTTGTAGTTGTCACTAGGGACAGTCTAC--------GTAATCTCTAT
TACCTTTGATGTTCTTTGTACTGCCTTGACAGTTGATGAATAGATCGAAAGTTATTCGA-GAAAAAAATTGCATTGATAC
AGAAATACAAGTATAGAGAAATGCCGAGAAGAATCTAATACAGAAACACACAAATACATGCATGCGAAGCCACACATGAC
AAACAAGCAACACGCCGTTGAAGCATAGTACTCCGGCAGATTACTTGCACCCAC--------CAGGCCACCCATGGATGG
ACAGGGCGTTGCGTTTGTGGCTATAAACTAAGAGAAGAGAGCCATAAGGAGCATGCCATATATGCTTAGCGTCACGCGTG
TGCCAGCGTCTCTCACCTTGGACACATACTAGGTGAAGGCCAAGTAGGATCGAGTGGAGTGTTTCCGATGGAGGAGTTGT
GGAAGGACATGTCCCTGCCTTCCACCCCGGCCGCGCCGCAGTGGTGCCACATCCGCTCTCCAGCCGCCGCCGTCTACCCC
CAGGACTACCTCGCCGGCCCGGTGCCACTGCGGCGGGGGCCTCCTTACACGGCGCTCACCCTCAGCTCCTCCGTCGAGTT
CACCTTCCACGGCGGTGGTTCTGGTTCCGGTACGCCCTCCGGCTCCAGCCCCTGCAATGACTACCCCTTTGGCTTCCCCT
CTGTCTCCGGAGCCAACAGCAGCAACAACAACAGCAAGAGGGTGCAGGTCGATGCTCCGGCGGCGGCCGACCGTCAGCGC
CGGATGATCAAGAACCGGGAGTCGGCGGCCCGGTCGCGGGCGCGGAAGCAGGCCTACACCAACGAGCTGGAGATGGAGCT
GGCGCAGCTGCGCAGGGAGAACCAGATGCTCATCAAGCGCGAGCAGGACTTCATCAAAGTACGCCTACGCGCGTATTCGA
CATTGCCATTTGATTAGT----------------------TTCAAGCAAGCATGCAGCATTGTGATATTGGTTGCC----
-----TTGCGCATCTGGATGCAGGAACGTTCGGCGACGGCGGCGCAGGCGGCAGTCGTCCCCGACAGCAGCAGCGGCGG-
-----CGGCGGCGGCAGGAG---------CAGGTCCACTCTCCACTTCGAGCTCGAGCAGAGGCAGAGGTGCCGCTCCGC
CCCTGCGCCATGATCGTCGGCGGCGGCCATGGTTCATCGACTGCAGCAGCTTAATTATTCCACTAATTAATTAGTTATAT
AGTACAGTACAAGACTACGCAATGCATGTGCTTGCTACTTACTACATGATTAATTGTCCAAAGCTAGCTCTTGGTGATGG
ACATATCAATATTAAATGGGAGTCGTGAACTATGCATGTGCATATGTAATCTAGCTAGTAC---GTAGTAGTAGCT----
----------------------------------------AGGTGATGGACGAATCAATCGATCCAGGTATGTAAATTAA
CGGCATTTCCGTCACAAGTAGGTGATGGCTGATTTGTATGATATAAAGATCGCTTGTGTGAGGCCGCCAGACCGTA----
--CGTGGATTCGATTTCCTTTTGTTCCTGCTTTATATGTTGTCCTACCTAGCGGGCAAGACGTGGAATGGAATCCTATGT
AATATATGTCCCCACCGGCGAGCACCACGCATGCACCACAAACA--------TGGTATTCACCGTTAATTTCGTTAGCTA
CTGTATCTATGTGTGCATGTCTATGGACGACAATGCTA-----ATCTGGTGAGAAACGACGTGTTCCTAATTTCCTAATA
TGGTGTGTATTCCATTT-TTTAAAGTTATGAGCTTTATCAACATTGACCAAGTTTTATGT--------------------
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>chr2D_85
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-----GCCGCTGATCCTCCTCGTATCCTATGGCCTTCGAGCTATGGAGGTGTGGTGGATCCCGGCCCTTGTAGATGGGAG
GGCTCTGATATTATGTGTTTTTTTTTC-TGTTTGGTTAGGGTTTGTGTCATGCTCAGGAAGACGAGGCGGTGGCGGCTTC
CTAAAGATGGAATAAGAT--TCCTCATCTAGCC-CCG-TCCCGGTG----ATACATGTAGCATCGTCGGAGGGCGTGTGG
AAGTGTGTCTCTTGCGAATCTCGCGTGATTCAGTCGGTGTTTGCCTTTGGTGGATCCGATTGGATTCGGTCTTCGTTCAT
CTACGTTCATGTGTTAGAGG--TTGGATCCTTCCGATCTCCACTTCGCTCATAT-GCGACAGTTGTTGCTCGGATGTGTT
GGTCTTGTGAGGCCTTAGCACAATGACTTTCAGACTGTCTACTGCAACAAGTTTTGCCCGGTTCCGGAGAGGGAAAGGCG
ATGACAATGGCGCACCTTCGGCTCACTCCAGTGCATGTAGTCATTGCTATGTGATCTACGGACATGGATGTAATCTGTAC
TT-------TGTTTTTTGTACTACCTTGCTAGTTGTTGAATAGACCAAAAGAAT--------------------------
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-------------------------------------------------TCCTGCAAAAA--------------------
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>SNPs
------S--------S-----------------------------------SS---------------S-------S---
----------------------------------------------------------------------------S---
---------------------------S------------S--------------------------S------------
---------S------------S-------------S--------S---S-------S----------------------
-------------------------------------------------------SS----------------S------
----S---------------------------------S----------------S-----S------------------
---------------------S--------------------------S-----------------S-------------
------S-----S-----------S---------------S------S------------S-------------------
-----------------------------------------------------------S-----S--------------
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---------------------------S----------------------------------------------------
---------------------------------------------------------------S----------------
----------------------------S----------------------S-------------S--------------
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--------------------------S------------S----------------------------------------
------------S------S------------------------------------------------------------
--------------------S-----------------------------------------------------------
--------S-----------------------------------------------------------------------
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--------------------------S------S--S----S--S----------------S------------SSSSSS
SSSSS----S---------------------------------------------S-----------------------S
----------------------------S--------------------S------------------------------
----------------------------------------------S---------------------------------
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-------------------------------------------------------------SSS----------------
---S----------------------------------------------------------------------------
----------------------------------SSSSSSSS----------S---------------------------
------------------------------------------S-------------------------------------
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------------------------------------------------------------SS-S-----S----------
---------------S-S----------S------------S-------S------------S-----------------
-----S-----------------S---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS
>forward_621
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-----------------------------------------TGTCGTGAGGTGGTCTACGA-------------------
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>reverse_1709
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----------------------------GCAGGTCCACTCTCCACTTC--------------------------------
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>forward_1213
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-------------------------------------------------------------------------TCCAGTT
CACCTTCCACGGT-------------------------------------------------------------------
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>reverse_2744
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-----------------------CTTTGAGGACCTGAACGACGA------------------------------------
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