Multiple sequence alignment - TraesCS5A01G504500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G504500 chr5A 100.000 2423 0 0 1 2423 670249208 670251630 0.000000e+00 4475
1 TraesCS5A01G504500 chr5A 92.157 102 7 1 3 104 632900634 632900734 2.510000e-30 143
2 TraesCS5A01G504500 chr4B 91.532 744 37 11 1706 2423 625118679 625119422 0.000000e+00 1002
3 TraesCS5A01G504500 chr4B 92.593 513 29 1 960 1463 624871181 624871693 0.000000e+00 728
4 TraesCS5A01G504500 chr4D 92.461 703 22 13 1699 2385 488496025 488496712 0.000000e+00 976
5 TraesCS5A01G504500 chr4D 93.635 597 27 8 938 1529 488495307 488495897 0.000000e+00 881
6 TraesCS5A01G504500 chr2D 90.233 645 43 8 105 749 298843801 298844425 0.000000e+00 824
7 TraesCS5A01G504500 chr1B 94.118 204 12 0 547 750 384383328 384383125 6.510000e-81 311
8 TraesCS5A01G504500 chr2A 92.308 104 7 1 1 104 4182583 4182481 1.940000e-31 147
9 TraesCS5A01G504500 chr2A 92.157 102 7 1 3 104 713493157 713493257 2.510000e-30 143
10 TraesCS5A01G504500 chr6B 92.233 103 7 1 3 105 56284677 56284778 6.980000e-31 145
11 TraesCS5A01G504500 chr2B 92.233 103 7 1 3 105 37925031 37924930 6.980000e-31 145
12 TraesCS5A01G504500 chr2B 90.826 109 8 2 1 108 691527377 691527484 6.980000e-31 145
13 TraesCS5A01G504500 chr2B 91.176 102 8 1 3 104 394384681 394384781 1.170000e-28 137
14 TraesCS5A01G504500 chr7A 92.157 102 7 1 3 104 712554645 712554745 2.510000e-30 143
15 TraesCS5A01G504500 chrUn 91.176 102 8 1 3 104 49653867 49653767 1.170000e-28 137


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G504500 chr5A 670249208 670251630 2422 False 4475.0 4475 100.000 1 2423 1 chr5A.!!$F2 2422
1 TraesCS5A01G504500 chr4B 625118679 625119422 743 False 1002.0 1002 91.532 1706 2423 1 chr4B.!!$F2 717
2 TraesCS5A01G504500 chr4B 624871181 624871693 512 False 728.0 728 92.593 960 1463 1 chr4B.!!$F1 503
3 TraesCS5A01G504500 chr4D 488495307 488496712 1405 False 928.5 976 93.048 938 2385 2 chr4D.!!$F1 1447
4 TraesCS5A01G504500 chr2D 298843801 298844425 624 False 824.0 824 90.233 105 749 1 chr2D.!!$F1 644

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
804 805 0.038526 GGGTTCGTGATGTGACGTCT 60.039 55.0 17.92 0.0 40.34 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1624 1686 0.103026 CGGGAGCACGATGATTCAGA 59.897 55.0 0.0 0.0 35.47 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.675767 GTTGACGATATCTACGCCGA 57.324 50.000 0.34 0.00 0.00 5.54
20 21 2.305291 GTTGACGATATCTACGCCGAC 58.695 52.381 0.34 0.00 0.00 4.79
22 23 0.179230 GACGATATCTACGCCGACGG 60.179 60.000 10.29 10.29 46.04 4.79
23 24 1.134075 CGATATCTACGCCGACGGG 59.866 63.158 17.22 8.43 46.04 5.28
24 25 1.572085 CGATATCTACGCCGACGGGT 61.572 60.000 17.22 14.07 46.04 5.28
25 26 0.167689 GATATCTACGCCGACGGGTC 59.832 60.000 17.22 0.00 46.04 4.46
26 27 0.250640 ATATCTACGCCGACGGGTCT 60.251 55.000 17.22 3.74 46.04 3.85
27 28 0.392706 TATCTACGCCGACGGGTCTA 59.607 55.000 17.22 4.38 46.04 2.59
28 29 0.250640 ATCTACGCCGACGGGTCTAT 60.251 55.000 17.22 6.39 46.04 1.98
29 30 1.162181 TCTACGCCGACGGGTCTATG 61.162 60.000 17.22 4.26 46.04 2.23
30 31 2.728427 CTACGCCGACGGGTCTATGC 62.728 65.000 17.22 0.00 46.04 3.14
31 32 4.944372 CGCCGACGGGTCTATGCC 62.944 72.222 17.22 0.00 34.97 4.40
32 33 4.944372 GCCGACGGGTCTATGCCG 62.944 72.222 17.22 0.00 34.97 5.69
33 34 3.214123 CCGACGGGTCTATGCCGA 61.214 66.667 5.81 0.00 0.00 5.54
34 35 2.025727 CGACGGGTCTATGCCGAC 59.974 66.667 0.00 0.00 0.00 4.79
35 36 2.025727 GACGGGTCTATGCCGACG 59.974 66.667 0.00 0.00 34.75 5.12
36 37 3.480225 GACGGGTCTATGCCGACGG 62.480 68.421 10.29 10.29 34.75 4.79
59 60 1.597742 CCGATGGCAAAGGACCTATG 58.402 55.000 5.78 0.00 0.00 2.23
60 61 0.947244 CGATGGCAAAGGACCTATGC 59.053 55.000 0.00 0.00 39.33 3.14
63 64 4.954933 GCAAAGGACCTATGCCGA 57.045 55.556 0.00 0.00 34.03 5.54
64 65 2.394604 GCAAAGGACCTATGCCGAC 58.605 57.895 0.00 0.00 34.03 4.79
65 66 1.429148 GCAAAGGACCTATGCCGACG 61.429 60.000 0.00 0.00 34.03 5.12
66 67 0.174845 CAAAGGACCTATGCCGACGA 59.825 55.000 0.00 0.00 0.00 4.20
67 68 0.175073 AAAGGACCTATGCCGACGAC 59.825 55.000 0.00 0.00 0.00 4.34
68 69 1.673808 AAGGACCTATGCCGACGACC 61.674 60.000 0.00 0.00 0.00 4.79
69 70 2.416260 GACCTATGCCGACGACCC 59.584 66.667 0.00 0.00 0.00 4.46
70 71 3.148031 GACCTATGCCGACGACCCC 62.148 68.421 0.00 0.00 0.00 4.95
71 72 2.838225 CCTATGCCGACGACCCCT 60.838 66.667 0.00 0.00 0.00 4.79
72 73 2.417516 CTATGCCGACGACCCCTG 59.582 66.667 0.00 0.00 0.00 4.45
73 74 3.151710 TATGCCGACGACCCCTGG 61.152 66.667 0.00 0.00 0.00 4.45
79 80 3.834799 GACGACCCCTGGCCGTAG 61.835 72.222 0.00 0.00 36.60 3.51
92 93 2.411535 CCGTAGGCATAGACCACGA 58.588 57.895 0.00 0.00 46.14 4.35
93 94 0.311165 CCGTAGGCATAGACCACGAG 59.689 60.000 0.00 0.00 46.14 4.18
94 95 1.022735 CGTAGGCATAGACCACGAGT 58.977 55.000 0.00 0.00 36.78 4.18
95 96 1.002684 CGTAGGCATAGACCACGAGTC 60.003 57.143 0.00 0.00 46.71 3.36
102 103 3.993535 GACCACGAGTCCGGTAGT 58.006 61.111 0.00 0.00 39.84 2.73
103 104 1.505353 GACCACGAGTCCGGTAGTG 59.495 63.158 0.00 7.80 39.84 2.74
115 116 1.825474 CCGGTAGTGTCTCCATCAAGT 59.175 52.381 0.00 0.00 0.00 3.16
127 128 4.406972 TCTCCATCAAGTAACATCCAGAGG 59.593 45.833 0.00 0.00 0.00 3.69
128 129 3.118261 TCCATCAAGTAACATCCAGAGGC 60.118 47.826 0.00 0.00 0.00 4.70
165 166 9.566432 AAAGGGAAAATGTCTATCTCATATGAC 57.434 33.333 0.00 0.00 0.00 3.06
188 189 0.541863 AAGAATACTGCTGGTCGGGG 59.458 55.000 0.00 0.00 0.00 5.73
213 214 3.846405 AAGTCAGGAGGTGGCCGGA 62.846 63.158 5.05 0.00 0.00 5.14
240 241 2.980233 GCTCGCTGGTGCAAACCT 60.980 61.111 0.00 0.00 39.64 3.50
259 260 0.253160 TCCTCAGGGGTGGCATAAGT 60.253 55.000 0.00 0.00 36.25 2.24
265 266 2.428171 CAGGGGTGGCATAAGTTGAATG 59.572 50.000 0.00 0.00 0.00 2.67
266 267 2.042979 AGGGGTGGCATAAGTTGAATGT 59.957 45.455 0.00 0.00 0.00 2.71
267 268 2.166254 GGGGTGGCATAAGTTGAATGTG 59.834 50.000 0.00 0.00 0.00 3.21
279 280 2.424956 GTTGAATGTGGATGGAGCCTTC 59.575 50.000 0.00 0.00 0.00 3.46
280 281 1.303309 GAATGTGGATGGAGCCTTCG 58.697 55.000 0.00 0.00 0.00 3.79
281 282 0.911769 AATGTGGATGGAGCCTTCGA 59.088 50.000 0.00 0.00 0.00 3.71
294 295 1.807573 CTTCGACGAGGAGCTTGGC 60.808 63.158 0.00 0.00 0.00 4.52
311 312 2.671070 CGTTGGTGGAGCAGGGAT 59.329 61.111 0.00 0.00 0.00 3.85
313 314 1.379044 GTTGGTGGAGCAGGGATGG 60.379 63.158 0.00 0.00 0.00 3.51
414 415 4.357279 GCAGCCTGCTTGGAGGGT 62.357 66.667 10.04 7.06 45.00 4.34
429 430 1.599542 GAGGGTATCAACATCGCAAGC 59.400 52.381 0.00 0.00 37.18 4.01
441 442 2.100031 CGCAAGCGCATGGAGTACA 61.100 57.895 15.22 0.00 38.40 2.90
442 443 1.717937 GCAAGCGCATGGAGTACAG 59.282 57.895 15.22 0.00 38.36 2.74
443 444 1.717937 CAAGCGCATGGAGTACAGC 59.282 57.895 11.47 0.00 0.00 4.40
456 457 2.173569 GAGTACAGCCCCAATGATCCTT 59.826 50.000 0.00 0.00 0.00 3.36
469 470 1.552337 TGATCCTTGAGACTGGCAGTC 59.448 52.381 34.76 34.76 45.38 3.51
499 500 4.005650 TGCCAACATGCTTAGAGAAAGAG 58.994 43.478 0.00 0.00 37.38 2.85
520 521 6.629128 AGAGAGATAAATAGATCGCCATGTG 58.371 40.000 0.00 0.00 0.00 3.21
546 547 7.170393 GTCCTTTGTAGGGCAAATAAAGAAT 57.830 36.000 8.47 0.00 45.96 2.40
551 552 8.650143 TTTGTAGGGCAAATAAAGAATCTTCT 57.350 30.769 0.00 0.00 41.68 2.85
552 553 8.650143 TTGTAGGGCAAATAAAGAATCTTCTT 57.350 30.769 0.00 0.00 40.54 2.52
553 554 8.055279 TGTAGGGCAAATAAAGAATCTTCTTG 57.945 34.615 5.97 2.43 46.22 3.02
554 555 5.970592 AGGGCAAATAAAGAATCTTCTTGC 58.029 37.500 20.12 20.12 46.22 4.01
555 556 4.800471 GGGCAAATAAAGAATCTTCTTGCG 59.200 41.667 20.86 5.00 46.22 4.85
556 557 4.800471 GGCAAATAAAGAATCTTCTTGCGG 59.200 41.667 20.86 4.62 46.22 5.69
568 569 1.839424 TCTTGCGGAGATGAGTGAGA 58.161 50.000 0.00 0.00 0.00 3.27
572 573 1.137675 TGCGGAGATGAGTGAGAATGG 59.862 52.381 0.00 0.00 0.00 3.16
575 576 3.006323 GCGGAGATGAGTGAGAATGGTAT 59.994 47.826 0.00 0.00 0.00 2.73
577 578 5.105554 GCGGAGATGAGTGAGAATGGTATAT 60.106 44.000 0.00 0.00 0.00 0.86
578 579 6.559810 CGGAGATGAGTGAGAATGGTATATC 58.440 44.000 0.00 0.00 0.00 1.63
610 611 2.582636 AGGAAGGGGAACATTGTAGCAT 59.417 45.455 0.00 0.00 32.27 3.79
621 622 4.573900 ACATTGTAGCATATGAGCTAGCC 58.426 43.478 12.13 3.49 46.90 3.93
646 647 2.047844 GGAGAACAGAGCAGCGCA 60.048 61.111 11.47 0.00 0.00 6.09
647 648 2.386660 GGAGAACAGAGCAGCGCAC 61.387 63.158 11.47 0.00 0.00 5.34
648 649 1.373999 GAGAACAGAGCAGCGCACT 60.374 57.895 11.47 6.38 0.00 4.40
663 664 4.264638 ACTGCGGTTTGGTTGCGC 62.265 61.111 0.00 0.00 0.00 6.09
704 705 3.482722 CAACTTATGCCAAGCAGACTG 57.517 47.619 0.00 0.00 43.65 3.51
715 716 4.521146 CCAAGCAGACTGTAATGATCCTT 58.479 43.478 3.99 0.00 0.00 3.36
722 723 8.270744 AGCAGACTGTAATGATCCTTCTTAATT 58.729 33.333 3.99 0.00 0.00 1.40
772 773 6.877611 AAAAGATAAACACGATCAGGTTGT 57.122 33.333 0.00 0.00 0.00 3.32
773 774 6.481954 AAAGATAAACACGATCAGGTTGTC 57.518 37.500 0.00 1.53 0.00 3.18
774 775 5.407407 AGATAAACACGATCAGGTTGTCT 57.593 39.130 6.43 6.43 0.00 3.41
775 776 5.171476 AGATAAACACGATCAGGTTGTCTG 58.829 41.667 10.20 0.00 44.68 3.51
776 777 2.910688 AACACGATCAGGTTGTCTGT 57.089 45.000 0.00 0.00 43.76 3.41
777 778 2.154854 ACACGATCAGGTTGTCTGTG 57.845 50.000 0.00 0.00 43.76 3.66
778 779 1.270305 ACACGATCAGGTTGTCTGTGG 60.270 52.381 0.00 0.00 43.76 4.17
779 780 1.048601 ACGATCAGGTTGTCTGTGGT 58.951 50.000 0.00 0.00 43.76 4.16
780 781 1.416401 ACGATCAGGTTGTCTGTGGTT 59.584 47.619 0.00 0.00 43.76 3.67
781 782 2.158813 ACGATCAGGTTGTCTGTGGTTT 60.159 45.455 0.00 0.00 43.76 3.27
782 783 2.878406 CGATCAGGTTGTCTGTGGTTTT 59.122 45.455 0.00 0.00 43.76 2.43
783 784 4.062293 CGATCAGGTTGTCTGTGGTTTTA 58.938 43.478 0.00 0.00 43.76 1.52
784 785 4.695455 CGATCAGGTTGTCTGTGGTTTTAT 59.305 41.667 0.00 0.00 43.76 1.40
785 786 5.390885 CGATCAGGTTGTCTGTGGTTTTATG 60.391 44.000 0.00 0.00 43.76 1.90
786 787 4.141287 TCAGGTTGTCTGTGGTTTTATGG 58.859 43.478 0.00 0.00 43.76 2.74
787 788 3.255642 CAGGTTGTCTGTGGTTTTATGGG 59.744 47.826 0.00 0.00 38.64 4.00
788 789 3.117284 AGGTTGTCTGTGGTTTTATGGGT 60.117 43.478 0.00 0.00 0.00 4.51
789 790 3.639561 GGTTGTCTGTGGTTTTATGGGTT 59.360 43.478 0.00 0.00 0.00 4.11
790 791 4.261867 GGTTGTCTGTGGTTTTATGGGTTC 60.262 45.833 0.00 0.00 0.00 3.62
791 792 3.142951 TGTCTGTGGTTTTATGGGTTCG 58.857 45.455 0.00 0.00 0.00 3.95
792 793 3.143728 GTCTGTGGTTTTATGGGTTCGT 58.856 45.455 0.00 0.00 0.00 3.85
793 794 3.058501 GTCTGTGGTTTTATGGGTTCGTG 60.059 47.826 0.00 0.00 0.00 4.35
794 795 3.142951 CTGTGGTTTTATGGGTTCGTGA 58.857 45.455 0.00 0.00 0.00 4.35
795 796 3.756434 CTGTGGTTTTATGGGTTCGTGAT 59.244 43.478 0.00 0.00 0.00 3.06
796 797 3.504134 TGTGGTTTTATGGGTTCGTGATG 59.496 43.478 0.00 0.00 0.00 3.07
797 798 3.504520 GTGGTTTTATGGGTTCGTGATGT 59.495 43.478 0.00 0.00 0.00 3.06
798 799 3.504134 TGGTTTTATGGGTTCGTGATGTG 59.496 43.478 0.00 0.00 0.00 3.21
799 800 3.754323 GGTTTTATGGGTTCGTGATGTGA 59.246 43.478 0.00 0.00 0.00 3.58
800 801 4.379082 GGTTTTATGGGTTCGTGATGTGAC 60.379 45.833 0.00 0.00 0.00 3.67
801 802 2.287393 TATGGGTTCGTGATGTGACG 57.713 50.000 0.00 0.00 40.83 4.35
802 803 0.320374 ATGGGTTCGTGATGTGACGT 59.680 50.000 0.00 0.00 40.34 4.34
803 804 0.319211 TGGGTTCGTGATGTGACGTC 60.319 55.000 9.11 9.11 40.34 4.34
804 805 0.038526 GGGTTCGTGATGTGACGTCT 60.039 55.000 17.92 0.00 40.34 4.18
805 806 1.060713 GGTTCGTGATGTGACGTCTG 58.939 55.000 17.92 0.00 40.34 3.51
806 807 1.335597 GGTTCGTGATGTGACGTCTGA 60.336 52.381 17.92 3.14 40.34 3.27
807 808 2.390938 GTTCGTGATGTGACGTCTGAA 58.609 47.619 17.92 7.51 40.34 3.02
808 809 2.987149 GTTCGTGATGTGACGTCTGAAT 59.013 45.455 17.92 7.48 40.34 2.57
809 810 2.863739 TCGTGATGTGACGTCTGAATC 58.136 47.619 17.92 15.97 40.34 2.52
810 811 2.488153 TCGTGATGTGACGTCTGAATCT 59.512 45.455 17.92 0.00 40.34 2.40
811 812 2.595977 CGTGATGTGACGTCTGAATCTG 59.404 50.000 17.92 9.67 34.56 2.90
812 813 3.579709 GTGATGTGACGTCTGAATCTGT 58.420 45.455 17.92 0.00 0.00 3.41
813 814 3.366121 GTGATGTGACGTCTGAATCTGTG 59.634 47.826 17.92 0.00 0.00 3.66
814 815 3.005791 TGATGTGACGTCTGAATCTGTGT 59.994 43.478 17.92 0.00 0.00 3.72
815 816 3.452755 TGTGACGTCTGAATCTGTGTT 57.547 42.857 17.92 0.00 0.00 3.32
816 817 3.792401 TGTGACGTCTGAATCTGTGTTT 58.208 40.909 17.92 0.00 0.00 2.83
817 818 3.555547 TGTGACGTCTGAATCTGTGTTTG 59.444 43.478 17.92 0.00 0.00 2.93
818 819 2.543848 TGACGTCTGAATCTGTGTTTGC 59.456 45.455 17.92 0.00 0.00 3.68
819 820 1.526887 ACGTCTGAATCTGTGTTTGCG 59.473 47.619 0.00 0.00 0.00 4.85
820 821 1.722751 CGTCTGAATCTGTGTTTGCGC 60.723 52.381 0.00 0.00 0.00 6.09
821 822 0.512518 TCTGAATCTGTGTTTGCGCG 59.487 50.000 0.00 0.00 0.00 6.86
822 823 0.235665 CTGAATCTGTGTTTGCGCGT 59.764 50.000 8.43 0.00 0.00 6.01
823 824 0.234625 TGAATCTGTGTTTGCGCGTC 59.765 50.000 8.43 0.00 0.00 5.19
824 825 0.452784 GAATCTGTGTTTGCGCGTCC 60.453 55.000 8.43 0.00 0.00 4.79
825 826 1.163420 AATCTGTGTTTGCGCGTCCA 61.163 50.000 8.43 0.00 0.00 4.02
826 827 1.841663 ATCTGTGTTTGCGCGTCCAC 61.842 55.000 8.43 14.06 0.00 4.02
827 828 3.838229 CTGTGTTTGCGCGTCCACG 62.838 63.158 8.43 0.00 43.27 4.94
828 829 3.932313 GTGTTTGCGCGTCCACGT 61.932 61.111 8.43 0.00 42.22 4.49
829 830 3.196394 TGTTTGCGCGTCCACGTT 61.196 55.556 8.43 0.00 42.22 3.99
830 831 2.720750 GTTTGCGCGTCCACGTTG 60.721 61.111 8.43 0.00 42.22 4.10
831 832 2.890961 TTTGCGCGTCCACGTTGA 60.891 55.556 8.43 0.00 42.22 3.18
832 833 3.158011 TTTGCGCGTCCACGTTGAC 62.158 57.895 8.43 9.65 42.22 3.18
833 834 4.578898 TGCGCGTCCACGTTGACT 62.579 61.111 16.73 0.00 42.22 3.41
834 835 3.335534 GCGCGTCCACGTTGACTT 61.336 61.111 16.73 0.00 42.22 3.01
835 836 2.877974 GCGCGTCCACGTTGACTTT 61.878 57.895 16.73 0.00 42.22 2.66
836 837 1.550659 GCGCGTCCACGTTGACTTTA 61.551 55.000 16.73 0.00 42.22 1.85
837 838 0.854062 CGCGTCCACGTTGACTTTAA 59.146 50.000 16.73 0.00 42.22 1.52
838 839 1.396316 CGCGTCCACGTTGACTTTAAC 60.396 52.381 16.73 1.97 42.22 2.01
839 840 1.070376 GCGTCCACGTTGACTTTAACC 60.070 52.381 16.73 0.00 42.22 2.85
840 841 2.203401 CGTCCACGTTGACTTTAACCA 58.797 47.619 16.73 0.00 32.97 3.67
841 842 2.220133 CGTCCACGTTGACTTTAACCAG 59.780 50.000 16.73 0.00 32.97 4.00
842 843 3.200483 GTCCACGTTGACTTTAACCAGT 58.800 45.455 12.27 0.00 32.39 4.00
843 844 3.246936 GTCCACGTTGACTTTAACCAGTC 59.753 47.826 12.27 1.04 43.23 3.51
844 845 2.220133 CCACGTTGACTTTAACCAGTCG 59.780 50.000 3.48 0.00 45.53 4.18
845 846 1.862827 ACGTTGACTTTAACCAGTCGC 59.137 47.619 3.48 0.00 45.53 5.19
846 847 1.193874 CGTTGACTTTAACCAGTCGCC 59.806 52.381 3.48 0.00 45.53 5.54
847 848 1.193874 GTTGACTTTAACCAGTCGCCG 59.806 52.381 3.48 0.00 45.53 6.46
848 849 0.675083 TGACTTTAACCAGTCGCCGA 59.325 50.000 3.48 0.00 45.53 5.54
849 850 1.068895 TGACTTTAACCAGTCGCCGAA 59.931 47.619 0.00 0.00 45.53 4.30
850 851 1.458445 GACTTTAACCAGTCGCCGAAC 59.542 52.381 0.00 0.00 34.12 3.95
851 852 1.202557 ACTTTAACCAGTCGCCGAACA 60.203 47.619 0.00 0.00 0.00 3.18
852 853 1.193874 CTTTAACCAGTCGCCGAACAC 59.806 52.381 0.00 0.00 0.00 3.32
853 854 0.104487 TTAACCAGTCGCCGAACACA 59.896 50.000 0.00 0.00 0.00 3.72
854 855 0.104487 TAACCAGTCGCCGAACACAA 59.896 50.000 0.00 0.00 0.00 3.33
855 856 1.157870 AACCAGTCGCCGAACACAAG 61.158 55.000 0.00 0.00 0.00 3.16
856 857 2.551270 CAGTCGCCGAACACAAGC 59.449 61.111 0.00 0.00 0.00 4.01
857 858 1.956170 CAGTCGCCGAACACAAGCT 60.956 57.895 0.00 0.00 0.00 3.74
858 859 1.227556 AGTCGCCGAACACAAGCTT 60.228 52.632 0.00 0.00 0.00 3.74
859 860 1.204312 GTCGCCGAACACAAGCTTC 59.796 57.895 0.00 0.00 0.00 3.86
860 861 1.069090 TCGCCGAACACAAGCTTCT 59.931 52.632 0.00 0.00 0.00 2.85
861 862 0.944311 TCGCCGAACACAAGCTTCTC 60.944 55.000 0.00 0.00 0.00 2.87
862 863 1.221466 CGCCGAACACAAGCTTCTCA 61.221 55.000 0.00 0.00 0.00 3.27
863 864 0.944386 GCCGAACACAAGCTTCTCAA 59.056 50.000 0.00 0.00 0.00 3.02
864 865 1.334149 GCCGAACACAAGCTTCTCAAC 60.334 52.381 0.00 0.00 0.00 3.18
865 866 1.070577 CCGAACACAAGCTTCTCAACG 60.071 52.381 0.00 0.31 0.00 4.10
866 867 1.657538 CGAACACAAGCTTCTCAACGC 60.658 52.381 0.00 0.00 0.00 4.84
867 868 0.663153 AACACAAGCTTCTCAACGCC 59.337 50.000 0.00 0.00 0.00 5.68
868 869 1.166531 ACACAAGCTTCTCAACGCCC 61.167 55.000 0.00 0.00 0.00 6.13
869 870 1.961277 ACAAGCTTCTCAACGCCCG 60.961 57.895 0.00 0.00 0.00 6.13
870 871 2.358737 AAGCTTCTCAACGCCCGG 60.359 61.111 0.00 0.00 0.00 5.73
871 872 3.178540 AAGCTTCTCAACGCCCGGT 62.179 57.895 0.00 0.00 0.00 5.28
872 873 3.119096 GCTTCTCAACGCCCGGTC 61.119 66.667 0.00 0.00 0.00 4.79
873 874 2.434359 CTTCTCAACGCCCGGTCC 60.434 66.667 0.00 0.00 0.00 4.46
874 875 3.234630 CTTCTCAACGCCCGGTCCA 62.235 63.158 0.00 0.00 0.00 4.02
875 876 2.725203 CTTCTCAACGCCCGGTCCAA 62.725 60.000 0.00 0.00 0.00 3.53
876 877 2.999739 TTCTCAACGCCCGGTCCAAC 63.000 60.000 0.00 0.00 0.00 3.77
877 878 4.973055 TCAACGCCCGGTCCAACG 62.973 66.667 0.00 0.00 0.00 4.10
884 885 3.283684 CCGGTCCAACGCAGCAAA 61.284 61.111 0.00 0.00 0.00 3.68
885 886 2.718731 CGGTCCAACGCAGCAAAA 59.281 55.556 0.00 0.00 0.00 2.44
886 887 1.657181 CGGTCCAACGCAGCAAAAC 60.657 57.895 0.00 0.00 0.00 2.43
887 888 1.299850 GGTCCAACGCAGCAAAACC 60.300 57.895 0.00 0.00 0.00 3.27
888 889 1.657181 GTCCAACGCAGCAAAACCG 60.657 57.895 0.00 0.00 0.00 4.44
889 890 2.115911 TCCAACGCAGCAAAACCGT 61.116 52.632 0.00 0.00 36.68 4.83
890 891 1.657181 CCAACGCAGCAAAACCGTC 60.657 57.895 0.00 0.00 33.59 4.79
891 892 1.657181 CAACGCAGCAAAACCGTCC 60.657 57.895 0.00 0.00 33.59 4.79
892 893 1.822186 AACGCAGCAAAACCGTCCT 60.822 52.632 0.00 0.00 33.59 3.85
893 894 1.381165 AACGCAGCAAAACCGTCCTT 61.381 50.000 0.00 0.00 33.59 3.36
894 895 1.082104 CGCAGCAAAACCGTCCTTC 60.082 57.895 0.00 0.00 0.00 3.46
895 896 1.781025 CGCAGCAAAACCGTCCTTCA 61.781 55.000 0.00 0.00 0.00 3.02
896 897 0.317854 GCAGCAAAACCGTCCTTCAC 60.318 55.000 0.00 0.00 0.00 3.18
897 898 0.310854 CAGCAAAACCGTCCTTCACC 59.689 55.000 0.00 0.00 0.00 4.02
898 899 0.822121 AGCAAAACCGTCCTTCACCC 60.822 55.000 0.00 0.00 0.00 4.61
899 900 1.946267 CAAAACCGTCCTTCACCCG 59.054 57.895 0.00 0.00 0.00 5.28
900 901 1.895231 AAAACCGTCCTTCACCCGC 60.895 57.895 0.00 0.00 0.00 6.13
901 902 2.612095 AAAACCGTCCTTCACCCGCA 62.612 55.000 0.00 0.00 0.00 5.69
902 903 2.612095 AAACCGTCCTTCACCCGCAA 62.612 55.000 0.00 0.00 0.00 4.85
903 904 2.742372 CCGTCCTTCACCCGCAAG 60.742 66.667 0.00 0.00 0.00 4.01
915 916 3.966543 CGCAAGGAACCACCCCCT 61.967 66.667 0.00 0.00 40.05 4.79
916 917 2.035783 GCAAGGAACCACCCCCTC 59.964 66.667 0.00 0.00 40.05 4.30
917 918 2.763902 CAAGGAACCACCCCCTCC 59.236 66.667 0.00 0.00 40.05 4.30
918 919 2.160171 CAAGGAACCACCCCCTCCA 61.160 63.158 0.00 0.00 40.05 3.86
919 920 1.388217 AAGGAACCACCCCCTCCAA 60.388 57.895 0.00 0.00 40.05 3.53
920 921 1.002242 AAGGAACCACCCCCTCCAAA 61.002 55.000 0.00 0.00 40.05 3.28
921 922 0.780090 AGGAACCACCCCCTCCAAAT 60.780 55.000 0.00 0.00 40.05 2.32
922 923 0.324368 GGAACCACCCCCTCCAAATC 60.324 60.000 0.00 0.00 0.00 2.17
923 924 0.324368 GAACCACCCCCTCCAAATCC 60.324 60.000 0.00 0.00 0.00 3.01
924 925 1.811025 AACCACCCCCTCCAAATCCC 61.811 60.000 0.00 0.00 0.00 3.85
925 926 2.689813 CACCCCCTCCAAATCCCC 59.310 66.667 0.00 0.00 0.00 4.81
926 927 2.620464 ACCCCCTCCAAATCCCCC 60.620 66.667 0.00 0.00 0.00 5.40
927 928 2.620137 CCCCCTCCAAATCCCCCA 60.620 66.667 0.00 0.00 0.00 4.96
928 929 2.689813 CCCCTCCAAATCCCCCAC 59.310 66.667 0.00 0.00 0.00 4.61
929 930 2.245379 CCCCTCCAAATCCCCCACA 61.245 63.158 0.00 0.00 0.00 4.17
930 931 1.307647 CCCTCCAAATCCCCCACAG 59.692 63.158 0.00 0.00 0.00 3.66
931 932 1.307647 CCTCCAAATCCCCCACAGG 59.692 63.158 0.00 0.00 0.00 4.00
932 933 1.380380 CTCCAAATCCCCCACAGGC 60.380 63.158 0.00 0.00 0.00 4.85
933 934 2.364186 CCAAATCCCCCACAGGCC 60.364 66.667 0.00 0.00 0.00 5.19
934 935 2.364186 CAAATCCCCCACAGGCCC 60.364 66.667 0.00 0.00 0.00 5.80
935 936 2.868566 AAATCCCCCACAGGCCCA 60.869 61.111 0.00 0.00 0.00 5.36
936 937 3.238197 AAATCCCCCACAGGCCCAC 62.238 63.158 0.00 0.00 0.00 4.61
951 952 1.231641 CCACACCACCCCTCCAAAA 59.768 57.895 0.00 0.00 0.00 2.44
952 953 0.397816 CCACACCACCCCTCCAAAAA 60.398 55.000 0.00 0.00 0.00 1.94
970 971 2.371910 AAACAAAACCCACACCAACG 57.628 45.000 0.00 0.00 0.00 4.10
1116 1120 2.117257 GAGGACCTACTTCGAGGCC 58.883 63.158 0.00 0.00 40.65 5.19
1296 1300 4.185059 GTCTACGACGACGGGCCC 62.185 72.222 13.57 13.57 44.46 5.80
1447 1461 3.181522 GCTGAGTTGAGAAGCTTGATTCG 60.182 47.826 2.10 0.00 34.27 3.34
1468 1482 2.106074 CCGTGGCGATGCTTGCTTA 61.106 57.895 0.00 0.00 0.00 3.09
1470 1484 1.634757 CGTGGCGATGCTTGCTTACA 61.635 55.000 0.00 0.00 0.00 2.41
1499 1513 3.569194 TGTGTTTCCTTCCTGCTGTAA 57.431 42.857 0.00 0.00 0.00 2.41
1505 1519 4.640771 TTCCTTCCTGCTGTAAATCAGT 57.359 40.909 0.00 0.00 45.23 3.41
1506 1520 5.755409 TTCCTTCCTGCTGTAAATCAGTA 57.245 39.130 0.00 0.00 45.23 2.74
1507 1521 5.086104 TCCTTCCTGCTGTAAATCAGTAC 57.914 43.478 0.00 0.00 45.23 2.73
1508 1522 4.777896 TCCTTCCTGCTGTAAATCAGTACT 59.222 41.667 0.00 0.00 45.23 2.73
1555 1595 5.009610 GTGGAATTTACTGTGGATTGTGTGT 59.990 40.000 0.00 0.00 0.00 3.72
1556 1596 5.009510 TGGAATTTACTGTGGATTGTGTGTG 59.990 40.000 0.00 0.00 0.00 3.82
1557 1597 5.240623 GGAATTTACTGTGGATTGTGTGTGA 59.759 40.000 0.00 0.00 0.00 3.58
1558 1598 6.238897 GGAATTTACTGTGGATTGTGTGTGAA 60.239 38.462 0.00 0.00 0.00 3.18
1567 1607 5.003160 TGGATTGTGTGTGAAATCGAAGAT 58.997 37.500 0.00 0.00 45.12 2.40
1569 1609 5.106555 GGATTGTGTGTGAAATCGAAGATGT 60.107 40.000 0.00 0.00 45.12 3.06
1577 1617 5.700373 TGTGAAATCGAAGATGTTGTGATCA 59.300 36.000 0.00 0.00 45.12 2.92
1578 1618 6.372381 TGTGAAATCGAAGATGTTGTGATCAT 59.628 34.615 0.00 0.00 45.12 2.45
1579 1619 6.904011 GTGAAATCGAAGATGTTGTGATCATC 59.096 38.462 0.00 0.00 45.12 2.92
1580 1620 6.594937 TGAAATCGAAGATGTTGTGATCATCA 59.405 34.615 0.00 0.00 45.12 3.07
1582 1622 6.600246 ATCGAAGATGTTGTGATCATCAAG 57.400 37.500 0.00 0.00 45.12 3.02
1592 1654 4.449131 TGTGATCATCAAGCTTCTGATCC 58.551 43.478 28.91 23.34 42.92 3.36
1609 1671 4.985413 TGATCCGATTTGCTGTGAAAATC 58.015 39.130 1.87 1.87 39.57 2.17
1617 1679 5.356882 TTTGCTGTGAAAATCGAAGTAGG 57.643 39.130 0.00 0.00 0.00 3.18
1618 1680 4.265904 TGCTGTGAAAATCGAAGTAGGA 57.734 40.909 0.00 0.00 0.00 2.94
1619 1681 4.245660 TGCTGTGAAAATCGAAGTAGGAG 58.754 43.478 0.00 0.00 0.00 3.69
1620 1682 4.246458 GCTGTGAAAATCGAAGTAGGAGT 58.754 43.478 0.00 0.00 0.00 3.85
1621 1683 5.047590 TGCTGTGAAAATCGAAGTAGGAGTA 60.048 40.000 0.00 0.00 0.00 2.59
1622 1684 5.517054 GCTGTGAAAATCGAAGTAGGAGTAG 59.483 44.000 0.00 0.00 0.00 2.57
1623 1685 6.585695 TGTGAAAATCGAAGTAGGAGTAGT 57.414 37.500 0.00 0.00 0.00 2.73
1624 1686 6.989659 TGTGAAAATCGAAGTAGGAGTAGTT 58.010 36.000 0.00 0.00 0.00 2.24
1625 1687 7.088905 TGTGAAAATCGAAGTAGGAGTAGTTC 58.911 38.462 0.00 0.00 35.84 3.01
1626 1688 7.039923 TGTGAAAATCGAAGTAGGAGTAGTTCT 60.040 37.037 0.00 0.00 36.70 3.01
1627 1689 7.273815 GTGAAAATCGAAGTAGGAGTAGTTCTG 59.726 40.741 0.00 0.00 36.70 3.02
1628 1690 7.176165 TGAAAATCGAAGTAGGAGTAGTTCTGA 59.824 37.037 0.00 0.00 36.70 3.27
1629 1691 7.463961 AAATCGAAGTAGGAGTAGTTCTGAA 57.536 36.000 0.00 0.00 36.70 3.02
1630 1692 7.648039 AATCGAAGTAGGAGTAGTTCTGAAT 57.352 36.000 0.00 0.00 36.70 2.57
1631 1693 6.680874 TCGAAGTAGGAGTAGTTCTGAATC 57.319 41.667 0.00 0.00 36.70 2.52
1632 1694 6.178324 TCGAAGTAGGAGTAGTTCTGAATCA 58.822 40.000 0.00 0.00 36.70 2.57
1633 1695 6.829298 TCGAAGTAGGAGTAGTTCTGAATCAT 59.171 38.462 0.00 0.00 36.70 2.45
1634 1696 7.012515 TCGAAGTAGGAGTAGTTCTGAATCATC 59.987 40.741 0.00 0.00 36.70 2.92
1635 1697 6.627395 AGTAGGAGTAGTTCTGAATCATCG 57.373 41.667 0.00 0.00 0.00 3.84
1636 1698 6.123651 AGTAGGAGTAGTTCTGAATCATCGT 58.876 40.000 0.00 0.00 0.00 3.73
1637 1699 5.255710 AGGAGTAGTTCTGAATCATCGTG 57.744 43.478 0.00 0.00 0.00 4.35
1638 1700 3.799420 GGAGTAGTTCTGAATCATCGTGC 59.201 47.826 0.00 0.00 0.00 5.34
1639 1701 4.440802 GGAGTAGTTCTGAATCATCGTGCT 60.441 45.833 0.00 0.00 0.00 4.40
1640 1702 4.677584 AGTAGTTCTGAATCATCGTGCTC 58.322 43.478 0.00 0.00 0.00 4.26
1641 1703 2.898705 AGTTCTGAATCATCGTGCTCC 58.101 47.619 0.00 0.00 0.00 4.70
1642 1704 1.936547 GTTCTGAATCATCGTGCTCCC 59.063 52.381 0.00 0.00 0.00 4.30
1643 1705 0.103026 TCTGAATCATCGTGCTCCCG 59.897 55.000 0.00 0.00 0.00 5.14
1644 1706 0.103026 CTGAATCATCGTGCTCCCGA 59.897 55.000 0.00 0.00 41.73 5.14
1646 1708 1.269778 TGAATCATCGTGCTCCCGATC 60.270 52.381 3.98 0.00 45.25 3.69
1647 1709 1.000283 GAATCATCGTGCTCCCGATCT 60.000 52.381 3.98 0.00 45.25 2.75
1648 1710 0.316522 ATCATCGTGCTCCCGATCTG 59.683 55.000 3.98 0.00 45.25 2.90
1649 1711 0.751643 TCATCGTGCTCCCGATCTGA 60.752 55.000 3.98 0.06 45.25 3.27
1650 1712 0.103026 CATCGTGCTCCCGATCTGAA 59.897 55.000 3.98 0.00 45.25 3.02
1651 1713 0.824109 ATCGTGCTCCCGATCTGAAA 59.176 50.000 1.51 0.00 43.74 2.69
1652 1714 0.824109 TCGTGCTCCCGATCTGAAAT 59.176 50.000 0.00 0.00 30.63 2.17
1653 1715 1.207089 TCGTGCTCCCGATCTGAAATT 59.793 47.619 0.00 0.00 30.63 1.82
1654 1716 1.594862 CGTGCTCCCGATCTGAAATTC 59.405 52.381 0.00 0.00 0.00 2.17
1655 1717 2.739932 CGTGCTCCCGATCTGAAATTCT 60.740 50.000 0.00 0.00 0.00 2.40
1656 1718 2.611292 GTGCTCCCGATCTGAAATTCTG 59.389 50.000 0.00 0.00 0.00 3.02
1657 1719 2.501316 TGCTCCCGATCTGAAATTCTGA 59.499 45.455 5.07 5.07 0.00 3.27
1658 1720 3.055167 TGCTCCCGATCTGAAATTCTGAA 60.055 43.478 6.66 0.00 0.00 3.02
1659 1721 3.311048 GCTCCCGATCTGAAATTCTGAAC 59.689 47.826 6.66 3.70 0.00 3.18
1660 1722 4.507710 CTCCCGATCTGAAATTCTGAACA 58.492 43.478 6.66 0.00 0.00 3.18
1661 1723 4.507710 TCCCGATCTGAAATTCTGAACAG 58.492 43.478 6.66 0.00 0.00 3.16
1662 1724 4.020218 TCCCGATCTGAAATTCTGAACAGT 60.020 41.667 6.66 0.00 0.00 3.55
1663 1725 4.697352 CCCGATCTGAAATTCTGAACAGTT 59.303 41.667 6.66 0.00 0.00 3.16
1664 1726 5.163814 CCCGATCTGAAATTCTGAACAGTTC 60.164 44.000 6.32 6.32 0.00 3.01
1665 1727 5.445142 CCGATCTGAAATTCTGAACAGTTCG 60.445 44.000 21.11 21.11 44.63 3.95
1666 1728 4.732285 TCTGAAATTCTGAACAGTTCGC 57.268 40.909 8.80 0.00 0.00 4.70
1667 1729 4.380531 TCTGAAATTCTGAACAGTTCGCT 58.619 39.130 8.80 0.00 0.00 4.93
1677 1739 2.621763 CAGTTCGCTGCTCTTTGGT 58.378 52.632 0.00 0.00 38.53 3.67
1678 1740 0.236711 CAGTTCGCTGCTCTTTGGTG 59.763 55.000 0.00 0.00 38.53 4.17
1679 1741 0.886490 AGTTCGCTGCTCTTTGGTGG 60.886 55.000 0.00 0.00 0.00 4.61
1680 1742 2.260869 TTCGCTGCTCTTTGGTGGC 61.261 57.895 0.00 0.00 0.00 5.01
1681 1743 3.741476 CGCTGCTCTTTGGTGGCC 61.741 66.667 0.00 0.00 0.00 5.36
1682 1744 2.282745 GCTGCTCTTTGGTGGCCT 60.283 61.111 3.32 0.00 0.00 5.19
1683 1745 2.633509 GCTGCTCTTTGGTGGCCTG 61.634 63.158 3.32 0.00 0.00 4.85
1684 1746 1.975407 CTGCTCTTTGGTGGCCTGG 60.975 63.158 3.32 0.00 0.00 4.45
1685 1747 2.116125 GCTCTTTGGTGGCCTGGT 59.884 61.111 3.32 0.00 0.00 4.00
1686 1748 2.270986 GCTCTTTGGTGGCCTGGTG 61.271 63.158 3.32 0.00 0.00 4.17
1687 1749 2.203480 TCTTTGGTGGCCTGGTGC 60.203 61.111 3.32 0.00 40.16 5.01
1915 1993 1.064946 CACCATCGACGAGCTCCTC 59.935 63.158 8.47 5.32 0.00 3.71
1937 2015 1.078848 CGCCACCTCTCCAAGAAGG 60.079 63.158 0.00 0.00 39.47 3.46
1938 2016 1.301293 GCCACCTCTCCAAGAAGGG 59.699 63.158 0.00 0.00 38.24 3.95
1939 2017 1.994463 CCACCTCTCCAAGAAGGGG 59.006 63.158 0.00 0.00 43.17 4.79
2047 2125 3.845259 TACCGGGACATCCTGCGC 61.845 66.667 6.32 0.00 41.13 6.09
2385 2475 6.405397 GGTTGTAAAATTCCCTATGTGCGAAT 60.405 38.462 0.00 0.00 0.00 3.34
2386 2476 7.201750 GGTTGTAAAATTCCCTATGTGCGAATA 60.202 37.037 0.00 0.00 0.00 1.75
2398 2488 7.119699 CCCTATGTGCGAATATTTATGTGATGT 59.880 37.037 0.00 0.00 0.00 3.06
2399 2489 7.959109 CCTATGTGCGAATATTTATGTGATGTG 59.041 37.037 0.00 0.00 0.00 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.305291 GTCGGCGTAGATATCGTCAAC 58.695 52.381 6.85 0.00 32.96 3.18
1 2 1.070376 CGTCGGCGTAGATATCGTCAA 60.070 52.381 6.85 0.00 32.96 3.18
2 3 0.509929 CGTCGGCGTAGATATCGTCA 59.490 55.000 6.85 0.00 32.96 4.35
3 4 0.179230 CCGTCGGCGTAGATATCGTC 60.179 60.000 9.28 0.00 36.15 4.20
4 5 1.572085 CCCGTCGGCGTAGATATCGT 61.572 60.000 9.28 0.00 36.15 3.73
5 6 1.134075 CCCGTCGGCGTAGATATCG 59.866 63.158 9.28 2.11 36.15 2.92
6 7 0.167689 GACCCGTCGGCGTAGATATC 59.832 60.000 9.28 0.00 36.15 1.63
7 8 0.250640 AGACCCGTCGGCGTAGATAT 60.251 55.000 9.28 0.00 36.15 1.63
8 9 0.392706 TAGACCCGTCGGCGTAGATA 59.607 55.000 9.28 0.00 36.15 1.98
9 10 0.250640 ATAGACCCGTCGGCGTAGAT 60.251 55.000 9.28 0.00 36.15 1.98
10 11 1.146930 ATAGACCCGTCGGCGTAGA 59.853 57.895 9.28 0.00 36.15 2.59
11 12 1.281960 CATAGACCCGTCGGCGTAG 59.718 63.158 9.28 1.04 36.15 3.51
12 13 2.837883 GCATAGACCCGTCGGCGTA 61.838 63.158 9.28 0.00 36.15 4.42
13 14 4.203076 GCATAGACCCGTCGGCGT 62.203 66.667 9.28 5.34 36.15 5.68
14 15 4.944372 GGCATAGACCCGTCGGCG 62.944 72.222 0.29 0.29 37.95 6.46
15 16 4.944372 CGGCATAGACCCGTCGGC 62.944 72.222 5.50 0.00 40.84 5.54
16 17 3.214123 TCGGCATAGACCCGTCGG 61.214 66.667 3.60 3.60 45.71 4.79
17 18 2.025727 GTCGGCATAGACCCGTCG 59.974 66.667 0.00 0.00 45.71 5.12
18 19 2.025727 CGTCGGCATAGACCCGTC 59.974 66.667 0.00 0.00 45.71 4.79
19 20 3.524606 CCGTCGGCATAGACCCGT 61.525 66.667 0.00 0.00 45.71 5.28
40 41 1.597742 CATAGGTCCTTTGCCATCGG 58.402 55.000 0.00 0.00 0.00 4.18
41 42 0.947244 GCATAGGTCCTTTGCCATCG 59.053 55.000 20.40 0.00 33.51 3.84
46 47 1.429148 CGTCGGCATAGGTCCTTTGC 61.429 60.000 22.29 22.29 37.63 3.68
47 48 0.174845 TCGTCGGCATAGGTCCTTTG 59.825 55.000 0.00 0.00 0.00 2.77
48 49 0.175073 GTCGTCGGCATAGGTCCTTT 59.825 55.000 0.00 0.00 0.00 3.11
49 50 1.673808 GGTCGTCGGCATAGGTCCTT 61.674 60.000 0.00 0.00 0.00 3.36
50 51 2.125961 GGTCGTCGGCATAGGTCCT 61.126 63.158 0.00 0.00 0.00 3.85
51 52 2.416260 GGTCGTCGGCATAGGTCC 59.584 66.667 0.00 0.00 0.00 4.46
52 53 2.416260 GGGTCGTCGGCATAGGTC 59.584 66.667 0.00 0.00 0.00 3.85
53 54 3.152400 GGGGTCGTCGGCATAGGT 61.152 66.667 0.00 0.00 0.00 3.08
54 55 2.838225 AGGGGTCGTCGGCATAGG 60.838 66.667 0.00 0.00 0.00 2.57
55 56 2.417516 CAGGGGTCGTCGGCATAG 59.582 66.667 0.00 0.00 0.00 2.23
56 57 3.151710 CCAGGGGTCGTCGGCATA 61.152 66.667 0.00 0.00 0.00 3.14
74 75 0.311165 CTCGTGGTCTATGCCTACGG 59.689 60.000 0.00 0.00 35.41 4.02
75 76 1.002684 GACTCGTGGTCTATGCCTACG 60.003 57.143 0.00 0.00 41.46 3.51
76 77 1.337387 GGACTCGTGGTCTATGCCTAC 59.663 57.143 10.06 0.00 43.97 3.18
77 78 1.688772 GGACTCGTGGTCTATGCCTA 58.311 55.000 10.06 0.00 43.97 3.93
78 79 1.384989 CGGACTCGTGGTCTATGCCT 61.385 60.000 10.06 0.00 43.97 4.75
79 80 1.065928 CGGACTCGTGGTCTATGCC 59.934 63.158 10.06 0.00 43.97 4.40
80 81 1.065928 CCGGACTCGTGGTCTATGC 59.934 63.158 0.00 0.00 43.97 3.14
81 82 1.602851 CTACCGGACTCGTGGTCTATG 59.397 57.143 9.46 3.82 43.97 2.23
82 83 1.211457 ACTACCGGACTCGTGGTCTAT 59.789 52.381 9.46 0.00 43.97 1.98
83 84 0.615331 ACTACCGGACTCGTGGTCTA 59.385 55.000 9.46 0.00 43.97 2.59
84 85 0.959372 CACTACCGGACTCGTGGTCT 60.959 60.000 9.46 0.00 43.97 3.85
85 86 1.239968 ACACTACCGGACTCGTGGTC 61.240 60.000 9.46 3.43 43.79 4.02
86 87 1.228367 ACACTACCGGACTCGTGGT 60.228 57.895 9.46 0.00 42.34 4.16
87 88 0.959372 AGACACTACCGGACTCGTGG 60.959 60.000 9.46 0.00 33.95 4.94
88 89 0.447011 GAGACACTACCGGACTCGTG 59.553 60.000 9.46 11.84 33.95 4.35
89 90 0.676151 GGAGACACTACCGGACTCGT 60.676 60.000 9.46 0.00 33.95 4.18
90 91 0.675837 TGGAGACACTACCGGACTCG 60.676 60.000 9.46 0.00 33.40 4.18
91 92 3.261250 TGGAGACACTACCGGACTC 57.739 57.895 9.46 6.71 33.40 3.36
103 104 5.344743 TCTGGATGTTACTTGATGGAGAC 57.655 43.478 0.00 0.00 0.00 3.36
115 116 1.496060 ATGTCCGCCTCTGGATGTTA 58.504 50.000 0.00 0.00 40.91 2.41
127 128 2.396590 TTCCCTTTGACTATGTCCGC 57.603 50.000 0.00 0.00 0.00 5.54
128 129 4.700213 ACATTTTCCCTTTGACTATGTCCG 59.300 41.667 0.00 0.00 0.00 4.79
179 180 0.537371 ACTTTCTTTGCCCCGACCAG 60.537 55.000 0.00 0.00 0.00 4.00
181 182 0.536460 TGACTTTCTTTGCCCCGACC 60.536 55.000 0.00 0.00 0.00 4.79
184 185 0.250727 TCCTGACTTTCTTTGCCCCG 60.251 55.000 0.00 0.00 0.00 5.73
188 189 1.882623 CCACCTCCTGACTTTCTTTGC 59.117 52.381 0.00 0.00 0.00 3.68
213 214 2.898840 CAGCGAGCATTCGGCCAT 60.899 61.111 2.24 0.00 46.76 4.40
219 220 0.730494 GTTTGCACCAGCGAGCATTC 60.730 55.000 0.00 0.00 46.23 2.67
220 221 1.286880 GTTTGCACCAGCGAGCATT 59.713 52.632 0.00 0.00 46.23 3.56
240 241 0.253160 ACTTATGCCACCCCTGAGGA 60.253 55.000 0.00 0.00 39.89 3.71
259 260 2.726821 GAAGGCTCCATCCACATTCAA 58.273 47.619 0.00 0.00 0.00 2.69
265 266 1.519455 CGTCGAAGGCTCCATCCAC 60.519 63.158 0.00 0.00 0.00 4.02
266 267 1.667154 CTCGTCGAAGGCTCCATCCA 61.667 60.000 0.00 0.00 0.00 3.41
267 268 1.066587 CTCGTCGAAGGCTCCATCC 59.933 63.158 0.00 0.00 0.00 3.51
279 280 3.916392 AACGCCAAGCTCCTCGTCG 62.916 63.158 7.40 0.00 33.72 5.12
280 281 2.048127 AACGCCAAGCTCCTCGTC 60.048 61.111 7.40 0.00 33.72 4.20
281 282 2.357517 CAACGCCAAGCTCCTCGT 60.358 61.111 0.00 0.00 36.67 4.18
294 295 1.746615 CATCCCTGCTCCACCAACG 60.747 63.158 0.00 0.00 0.00 4.10
311 312 0.589708 CGTATCATCGCGTAGGACCA 59.410 55.000 5.77 0.00 0.00 4.02
313 314 0.109873 CCCGTATCATCGCGTAGGAC 60.110 60.000 5.77 0.00 0.00 3.85
334 335 4.051922 CGGCAAGAAGAGTATATGACACC 58.948 47.826 0.00 0.00 0.00 4.16
390 391 3.648830 AAGCAGGCTGCCAGCTCT 61.649 61.111 34.23 22.33 45.55 4.09
399 400 0.621571 TGATACCCTCCAAGCAGGCT 60.622 55.000 0.00 0.00 37.29 4.58
406 407 1.557371 TGCGATGTTGATACCCTCCAA 59.443 47.619 0.00 0.00 0.00 3.53
414 415 1.003652 CATGCGCTTGCGATGTTGATA 60.004 47.619 19.55 0.00 43.34 2.15
429 430 2.203070 GGGGCTGTACTCCATGCG 60.203 66.667 6.98 0.00 0.00 4.73
441 442 1.213926 GTCTCAAGGATCATTGGGGCT 59.786 52.381 17.01 0.00 32.34 5.19
442 443 1.213926 AGTCTCAAGGATCATTGGGGC 59.786 52.381 16.59 16.59 35.41 5.80
443 444 2.422519 CCAGTCTCAAGGATCATTGGGG 60.423 54.545 19.26 12.55 31.19 4.96
469 470 1.373748 GCATGTTGGCAGCAACCAG 60.374 57.895 8.44 0.28 41.82 4.00
479 480 5.728471 TCTCTCTTTCTCTAAGCATGTTGG 58.272 41.667 0.00 0.00 33.66 3.77
499 500 5.462034 GCACATGGCGATCTATTTATCTC 57.538 43.478 0.00 0.00 0.00 2.75
529 530 6.975197 GCAAGAAGATTCTTTATTTGCCCTAC 59.025 38.462 21.36 1.21 44.70 3.18
546 547 2.165234 CTCACTCATCTCCGCAAGAAGA 59.835 50.000 0.00 0.00 37.61 2.87
551 552 2.419159 CCATTCTCACTCATCTCCGCAA 60.419 50.000 0.00 0.00 0.00 4.85
552 553 1.137675 CCATTCTCACTCATCTCCGCA 59.862 52.381 0.00 0.00 0.00 5.69
553 554 1.137872 ACCATTCTCACTCATCTCCGC 59.862 52.381 0.00 0.00 0.00 5.54
554 555 4.862902 ATACCATTCTCACTCATCTCCG 57.137 45.455 0.00 0.00 0.00 4.63
555 556 7.395772 TGAGATATACCATTCTCACTCATCTCC 59.604 40.741 0.00 0.00 42.52 3.71
556 557 8.347004 TGAGATATACCATTCTCACTCATCTC 57.653 38.462 0.52 0.00 42.52 2.75
568 569 9.261035 CTTCCTACCTACATGAGATATACCATT 57.739 37.037 0.00 0.00 0.00 3.16
572 573 6.608002 CCCCTTCCTACCTACATGAGATATAC 59.392 46.154 0.00 0.00 0.00 1.47
575 576 4.673132 TCCCCTTCCTACCTACATGAGATA 59.327 45.833 0.00 0.00 0.00 1.98
577 578 2.863238 TCCCCTTCCTACCTACATGAGA 59.137 50.000 0.00 0.00 0.00 3.27
578 579 3.330126 TCCCCTTCCTACCTACATGAG 57.670 52.381 0.00 0.00 0.00 2.90
610 611 1.649321 CCCATCCTGGCTAGCTCATA 58.351 55.000 15.72 3.19 35.79 2.15
621 622 0.179936 GCTCTGTTCTCCCCATCCTG 59.820 60.000 0.00 0.00 0.00 3.86
646 647 4.264638 GCGCAACCAAACCGCAGT 62.265 61.111 0.30 0.00 46.32 4.40
722 723 8.425577 TTTTTGCGAATGAAAGGTTTTCATTA 57.574 26.923 22.61 10.38 45.88 1.90
749 750 6.710744 AGACAACCTGATCGTGTTTATCTTTT 59.289 34.615 0.00 0.00 0.00 2.27
750 751 6.147821 CAGACAACCTGATCGTGTTTATCTTT 59.852 38.462 7.47 0.00 45.78 2.52
751 752 5.639506 CAGACAACCTGATCGTGTTTATCTT 59.360 40.000 7.47 0.00 45.78 2.40
752 753 5.171476 CAGACAACCTGATCGTGTTTATCT 58.829 41.667 0.00 2.24 45.78 1.98
753 754 4.929808 ACAGACAACCTGATCGTGTTTATC 59.070 41.667 0.00 0.30 45.78 1.75
754 755 4.690748 CACAGACAACCTGATCGTGTTTAT 59.309 41.667 0.00 0.00 45.78 1.40
755 756 4.055360 CACAGACAACCTGATCGTGTTTA 58.945 43.478 0.00 0.00 45.78 2.01
756 757 2.872245 CACAGACAACCTGATCGTGTTT 59.128 45.455 0.00 0.00 45.78 2.83
757 758 2.483876 CACAGACAACCTGATCGTGTT 58.516 47.619 0.00 0.00 45.78 3.32
758 759 1.270305 CCACAGACAACCTGATCGTGT 60.270 52.381 0.00 0.00 45.78 4.49
759 760 1.270305 ACCACAGACAACCTGATCGTG 60.270 52.381 0.00 0.00 45.78 4.35
760 761 1.048601 ACCACAGACAACCTGATCGT 58.951 50.000 0.00 0.00 45.78 3.73
761 762 2.169832 AACCACAGACAACCTGATCG 57.830 50.000 0.00 0.00 45.78 3.69
762 763 5.106157 CCATAAAACCACAGACAACCTGATC 60.106 44.000 0.00 0.00 45.78 2.92
763 764 4.766891 CCATAAAACCACAGACAACCTGAT 59.233 41.667 0.00 0.00 45.78 2.90
764 765 4.141287 CCATAAAACCACAGACAACCTGA 58.859 43.478 0.00 0.00 45.78 3.86
766 767 3.117284 ACCCATAAAACCACAGACAACCT 60.117 43.478 0.00 0.00 0.00 3.50
767 768 3.227614 ACCCATAAAACCACAGACAACC 58.772 45.455 0.00 0.00 0.00 3.77
768 769 4.555906 CGAACCCATAAAACCACAGACAAC 60.556 45.833 0.00 0.00 0.00 3.32
769 770 3.566322 CGAACCCATAAAACCACAGACAA 59.434 43.478 0.00 0.00 0.00 3.18
770 771 3.142951 CGAACCCATAAAACCACAGACA 58.857 45.455 0.00 0.00 0.00 3.41
771 772 3.058501 CACGAACCCATAAAACCACAGAC 60.059 47.826 0.00 0.00 0.00 3.51
772 773 3.142951 CACGAACCCATAAAACCACAGA 58.857 45.455 0.00 0.00 0.00 3.41
773 774 3.142951 TCACGAACCCATAAAACCACAG 58.857 45.455 0.00 0.00 0.00 3.66
774 775 3.210232 TCACGAACCCATAAAACCACA 57.790 42.857 0.00 0.00 0.00 4.17
775 776 3.504520 ACATCACGAACCCATAAAACCAC 59.495 43.478 0.00 0.00 0.00 4.16
776 777 3.504134 CACATCACGAACCCATAAAACCA 59.496 43.478 0.00 0.00 0.00 3.67
777 778 3.754323 TCACATCACGAACCCATAAAACC 59.246 43.478 0.00 0.00 0.00 3.27
778 779 4.668177 CGTCACATCACGAACCCATAAAAC 60.668 45.833 0.00 0.00 42.69 2.43
779 780 3.433957 CGTCACATCACGAACCCATAAAA 59.566 43.478 0.00 0.00 42.69 1.52
780 781 2.997303 CGTCACATCACGAACCCATAAA 59.003 45.455 0.00 0.00 42.69 1.40
781 782 2.028839 ACGTCACATCACGAACCCATAA 60.029 45.455 0.00 0.00 42.69 1.90
782 783 1.546923 ACGTCACATCACGAACCCATA 59.453 47.619 0.00 0.00 42.69 2.74
783 784 0.320374 ACGTCACATCACGAACCCAT 59.680 50.000 0.00 0.00 42.69 4.00
784 785 0.319211 GACGTCACATCACGAACCCA 60.319 55.000 11.55 0.00 42.69 4.51
785 786 0.038526 AGACGTCACATCACGAACCC 60.039 55.000 19.50 0.00 42.69 4.11
786 787 1.060713 CAGACGTCACATCACGAACC 58.939 55.000 19.50 0.00 42.69 3.62
787 788 2.046283 TCAGACGTCACATCACGAAC 57.954 50.000 19.50 0.00 42.69 3.95
788 789 2.785713 TTCAGACGTCACATCACGAA 57.214 45.000 19.50 5.61 42.69 3.85
789 790 2.488153 AGATTCAGACGTCACATCACGA 59.512 45.455 19.50 0.00 42.69 4.35
790 791 2.595977 CAGATTCAGACGTCACATCACG 59.404 50.000 19.50 7.35 45.65 4.35
791 792 3.366121 CACAGATTCAGACGTCACATCAC 59.634 47.826 19.50 4.56 0.00 3.06
792 793 3.005791 ACACAGATTCAGACGTCACATCA 59.994 43.478 19.50 0.00 0.00 3.07
793 794 3.579709 ACACAGATTCAGACGTCACATC 58.420 45.455 19.50 14.81 0.00 3.06
794 795 3.667497 ACACAGATTCAGACGTCACAT 57.333 42.857 19.50 6.08 0.00 3.21
795 796 3.452755 AACACAGATTCAGACGTCACA 57.547 42.857 19.50 0.00 0.00 3.58
796 797 3.604772 GCAAACACAGATTCAGACGTCAC 60.605 47.826 19.50 3.64 0.00 3.67
797 798 2.543848 GCAAACACAGATTCAGACGTCA 59.456 45.455 19.50 0.00 0.00 4.35
798 799 2.410262 CGCAAACACAGATTCAGACGTC 60.410 50.000 7.70 7.70 0.00 4.34
799 800 1.526887 CGCAAACACAGATTCAGACGT 59.473 47.619 0.00 0.00 0.00 4.34
800 801 1.722751 GCGCAAACACAGATTCAGACG 60.723 52.381 0.30 0.00 0.00 4.18
801 802 1.722751 CGCGCAAACACAGATTCAGAC 60.723 52.381 8.75 0.00 0.00 3.51
802 803 0.512518 CGCGCAAACACAGATTCAGA 59.487 50.000 8.75 0.00 0.00 3.27
803 804 0.235665 ACGCGCAAACACAGATTCAG 59.764 50.000 5.73 0.00 0.00 3.02
804 805 0.234625 GACGCGCAAACACAGATTCA 59.765 50.000 5.73 0.00 0.00 2.57
805 806 0.452784 GGACGCGCAAACACAGATTC 60.453 55.000 5.73 0.00 0.00 2.52
806 807 1.163420 TGGACGCGCAAACACAGATT 61.163 50.000 5.73 0.00 0.00 2.40
807 808 1.596752 TGGACGCGCAAACACAGAT 60.597 52.632 5.73 0.00 0.00 2.90
808 809 2.202946 TGGACGCGCAAACACAGA 60.203 55.556 5.73 0.00 0.00 3.41
809 810 2.052237 GTGGACGCGCAAACACAG 60.052 61.111 17.16 0.00 34.16 3.66
810 811 3.931130 CGTGGACGCGCAAACACA 61.931 61.111 20.43 4.95 33.62 3.72
811 812 3.443261 AACGTGGACGCGCAAACAC 62.443 57.895 5.73 11.68 44.43 3.32
812 813 3.196394 AACGTGGACGCGCAAACA 61.196 55.556 5.73 0.00 44.43 2.83
813 814 2.720750 CAACGTGGACGCGCAAAC 60.721 61.111 5.73 0.00 44.43 2.93
814 815 2.890961 TCAACGTGGACGCGCAAA 60.891 55.556 5.73 0.00 44.43 3.68
815 816 3.632107 GTCAACGTGGACGCGCAA 61.632 61.111 7.46 0.00 44.43 4.85
816 817 4.578898 AGTCAACGTGGACGCGCA 62.579 61.111 17.27 0.00 44.43 6.09
817 818 1.550659 TAAAGTCAACGTGGACGCGC 61.551 55.000 17.27 0.00 44.43 6.86
818 819 0.854062 TTAAAGTCAACGTGGACGCG 59.146 50.000 17.27 3.53 44.43 6.01
819 820 1.070376 GGTTAAAGTCAACGTGGACGC 60.070 52.381 17.27 6.74 44.43 5.19
820 821 2.203401 TGGTTAAAGTCAACGTGGACG 58.797 47.619 17.27 0.00 42.62 4.79
821 822 3.200483 ACTGGTTAAAGTCAACGTGGAC 58.800 45.455 15.63 15.63 38.08 4.02
822 823 3.460103 GACTGGTTAAAGTCAACGTGGA 58.540 45.455 2.96 0.00 44.98 4.02
823 824 2.220133 CGACTGGTTAAAGTCAACGTGG 59.780 50.000 7.82 0.00 45.77 4.94
824 825 2.348218 GCGACTGGTTAAAGTCAACGTG 60.348 50.000 7.82 0.00 45.77 4.49
825 826 1.862827 GCGACTGGTTAAAGTCAACGT 59.137 47.619 7.82 0.00 45.77 3.99
826 827 1.193874 GGCGACTGGTTAAAGTCAACG 59.806 52.381 7.82 0.00 45.77 4.10
827 828 1.193874 CGGCGACTGGTTAAAGTCAAC 59.806 52.381 0.00 0.22 45.77 3.18
828 829 1.068895 TCGGCGACTGGTTAAAGTCAA 59.931 47.619 4.99 0.00 45.77 3.18
829 830 0.675083 TCGGCGACTGGTTAAAGTCA 59.325 50.000 4.99 0.00 45.77 3.41
830 831 1.458445 GTTCGGCGACTGGTTAAAGTC 59.542 52.381 10.16 0.00 42.68 3.01
831 832 1.202557 TGTTCGGCGACTGGTTAAAGT 60.203 47.619 10.16 0.00 0.00 2.66
832 833 1.193874 GTGTTCGGCGACTGGTTAAAG 59.806 52.381 10.16 0.00 0.00 1.85
833 834 1.219646 GTGTTCGGCGACTGGTTAAA 58.780 50.000 10.16 0.00 0.00 1.52
834 835 0.104487 TGTGTTCGGCGACTGGTTAA 59.896 50.000 10.16 0.00 0.00 2.01
835 836 0.104487 TTGTGTTCGGCGACTGGTTA 59.896 50.000 10.16 0.00 0.00 2.85
836 837 1.153329 TTGTGTTCGGCGACTGGTT 60.153 52.632 10.16 0.00 0.00 3.67
837 838 1.594293 CTTGTGTTCGGCGACTGGT 60.594 57.895 10.16 0.00 0.00 4.00
838 839 2.954753 GCTTGTGTTCGGCGACTGG 61.955 63.158 10.16 0.00 0.00 4.00
839 840 1.498865 AAGCTTGTGTTCGGCGACTG 61.499 55.000 10.16 0.00 0.00 3.51
840 841 1.222115 GAAGCTTGTGTTCGGCGACT 61.222 55.000 10.16 0.00 0.00 4.18
841 842 1.204312 GAAGCTTGTGTTCGGCGAC 59.796 57.895 10.16 5.76 0.00 5.19
842 843 0.944311 GAGAAGCTTGTGTTCGGCGA 60.944 55.000 4.99 4.99 0.00 5.54
843 844 1.221466 TGAGAAGCTTGTGTTCGGCG 61.221 55.000 2.10 0.00 0.00 6.46
844 845 0.944386 TTGAGAAGCTTGTGTTCGGC 59.056 50.000 2.10 0.00 0.00 5.54
845 846 1.070577 CGTTGAGAAGCTTGTGTTCGG 60.071 52.381 2.10 0.00 0.00 4.30
846 847 1.657538 GCGTTGAGAAGCTTGTGTTCG 60.658 52.381 2.10 5.15 0.00 3.95
847 848 1.334149 GGCGTTGAGAAGCTTGTGTTC 60.334 52.381 2.10 0.00 0.00 3.18
848 849 0.663153 GGCGTTGAGAAGCTTGTGTT 59.337 50.000 2.10 0.00 0.00 3.32
849 850 1.166531 GGGCGTTGAGAAGCTTGTGT 61.167 55.000 2.10 0.00 0.00 3.72
850 851 1.576421 GGGCGTTGAGAAGCTTGTG 59.424 57.895 2.10 0.00 0.00 3.33
851 852 1.961277 CGGGCGTTGAGAAGCTTGT 60.961 57.895 2.10 0.00 0.00 3.16
852 853 2.680913 CCGGGCGTTGAGAAGCTTG 61.681 63.158 2.10 0.00 0.00 4.01
853 854 2.358737 CCGGGCGTTGAGAAGCTT 60.359 61.111 0.00 0.00 0.00 3.74
854 855 3.591254 GACCGGGCGTTGAGAAGCT 62.591 63.158 6.32 0.00 0.00 3.74
855 856 3.119096 GACCGGGCGTTGAGAAGC 61.119 66.667 6.32 0.00 0.00 3.86
856 857 2.434359 GGACCGGGCGTTGAGAAG 60.434 66.667 6.32 0.00 0.00 2.85
857 858 2.809307 TTGGACCGGGCGTTGAGAA 61.809 57.895 6.32 0.00 0.00 2.87
858 859 3.235481 TTGGACCGGGCGTTGAGA 61.235 61.111 6.32 0.00 0.00 3.27
859 860 3.047877 GTTGGACCGGGCGTTGAG 61.048 66.667 6.32 0.00 0.00 3.02
860 861 4.973055 CGTTGGACCGGGCGTTGA 62.973 66.667 6.32 0.00 0.00 3.18
867 868 2.840066 TTTTGCTGCGTTGGACCGG 61.840 57.895 0.00 0.00 0.00 5.28
868 869 1.657181 GTTTTGCTGCGTTGGACCG 60.657 57.895 0.00 0.00 0.00 4.79
869 870 1.299850 GGTTTTGCTGCGTTGGACC 60.300 57.895 0.00 0.00 0.00 4.46
870 871 1.657181 CGGTTTTGCTGCGTTGGAC 60.657 57.895 0.00 0.00 0.00 4.02
871 872 2.054140 GACGGTTTTGCTGCGTTGGA 62.054 55.000 0.00 0.00 0.00 3.53
872 873 1.657181 GACGGTTTTGCTGCGTTGG 60.657 57.895 0.00 0.00 0.00 3.77
873 874 1.657181 GGACGGTTTTGCTGCGTTG 60.657 57.895 0.00 0.00 0.00 4.10
874 875 1.381165 AAGGACGGTTTTGCTGCGTT 61.381 50.000 0.00 0.00 0.00 4.84
875 876 1.782028 GAAGGACGGTTTTGCTGCGT 61.782 55.000 0.00 0.00 0.00 5.24
876 877 1.082104 GAAGGACGGTTTTGCTGCG 60.082 57.895 0.00 0.00 0.00 5.18
877 878 0.317854 GTGAAGGACGGTTTTGCTGC 60.318 55.000 0.00 0.00 0.00 5.25
878 879 0.310854 GGTGAAGGACGGTTTTGCTG 59.689 55.000 0.00 0.00 0.00 4.41
879 880 0.822121 GGGTGAAGGACGGTTTTGCT 60.822 55.000 0.00 0.00 0.00 3.91
880 881 1.658114 GGGTGAAGGACGGTTTTGC 59.342 57.895 0.00 0.00 0.00 3.68
881 882 1.946267 CGGGTGAAGGACGGTTTTG 59.054 57.895 0.00 0.00 0.00 2.44
882 883 1.895231 GCGGGTGAAGGACGGTTTT 60.895 57.895 0.00 0.00 0.00 2.43
883 884 2.281276 GCGGGTGAAGGACGGTTT 60.281 61.111 0.00 0.00 0.00 3.27
884 885 3.109592 TTGCGGGTGAAGGACGGTT 62.110 57.895 0.00 0.00 0.00 4.44
885 886 3.530910 CTTGCGGGTGAAGGACGGT 62.531 63.158 0.00 0.00 0.00 4.83
886 887 2.742372 CTTGCGGGTGAAGGACGG 60.742 66.667 0.00 0.00 0.00 4.79
887 888 2.742372 CCTTGCGGGTGAAGGACG 60.742 66.667 0.00 0.00 42.44 4.79
888 889 2.747686 TCCTTGCGGGTGAAGGAC 59.252 61.111 0.00 0.00 43.39 3.85
889 890 1.072505 GTTCCTTGCGGGTGAAGGA 59.927 57.895 0.00 0.00 45.99 3.36
890 891 1.971695 GGTTCCTTGCGGGTGAAGG 60.972 63.158 0.00 0.00 41.36 3.46
891 892 1.228124 TGGTTCCTTGCGGGTGAAG 60.228 57.895 0.00 0.00 36.25 3.02
892 893 1.527380 GTGGTTCCTTGCGGGTGAA 60.527 57.895 0.00 0.00 36.25 3.18
893 894 2.112297 GTGGTTCCTTGCGGGTGA 59.888 61.111 0.00 0.00 36.25 4.02
894 895 2.983592 GGTGGTTCCTTGCGGGTG 60.984 66.667 0.00 0.00 36.25 4.61
895 896 4.280019 GGGTGGTTCCTTGCGGGT 62.280 66.667 0.00 0.00 36.25 5.28
898 899 3.920093 GAGGGGGTGGTTCCTTGCG 62.920 68.421 0.00 0.00 36.25 4.85
899 900 2.035783 GAGGGGGTGGTTCCTTGC 59.964 66.667 0.00 0.00 36.25 4.01
900 901 1.725169 TTGGAGGGGGTGGTTCCTTG 61.725 60.000 0.00 0.00 36.25 3.61
901 902 1.002242 TTTGGAGGGGGTGGTTCCTT 61.002 55.000 0.00 0.00 36.25 3.36
902 903 0.780090 ATTTGGAGGGGGTGGTTCCT 60.780 55.000 0.00 0.00 36.25 3.36
903 904 0.324368 GATTTGGAGGGGGTGGTTCC 60.324 60.000 0.00 0.00 0.00 3.62
904 905 0.324368 GGATTTGGAGGGGGTGGTTC 60.324 60.000 0.00 0.00 0.00 3.62
905 906 1.781001 GGATTTGGAGGGGGTGGTT 59.219 57.895 0.00 0.00 0.00 3.67
906 907 2.246126 GGGATTTGGAGGGGGTGGT 61.246 63.158 0.00 0.00 0.00 4.16
907 908 2.689813 GGGATTTGGAGGGGGTGG 59.310 66.667 0.00 0.00 0.00 4.61
908 909 2.689813 GGGGATTTGGAGGGGGTG 59.310 66.667 0.00 0.00 0.00 4.61
909 910 2.620464 GGGGGATTTGGAGGGGGT 60.620 66.667 0.00 0.00 0.00 4.95
910 911 2.620137 TGGGGGATTTGGAGGGGG 60.620 66.667 0.00 0.00 0.00 5.40
911 912 2.228841 CTGTGGGGGATTTGGAGGGG 62.229 65.000 0.00 0.00 0.00 4.79
912 913 1.307647 CTGTGGGGGATTTGGAGGG 59.692 63.158 0.00 0.00 0.00 4.30
913 914 1.307647 CCTGTGGGGGATTTGGAGG 59.692 63.158 0.00 0.00 0.00 4.30
914 915 1.380380 GCCTGTGGGGGATTTGGAG 60.380 63.158 0.00 0.00 35.12 3.86
915 916 2.770130 GCCTGTGGGGGATTTGGA 59.230 61.111 0.00 0.00 35.12 3.53
916 917 2.364186 GGCCTGTGGGGGATTTGG 60.364 66.667 0.00 0.00 35.12 3.28
917 918 2.364186 GGGCCTGTGGGGGATTTG 60.364 66.667 0.84 0.00 35.12 2.32
918 919 2.868566 TGGGCCTGTGGGGGATTT 60.869 61.111 4.53 0.00 35.12 2.17
919 920 3.672503 GTGGGCCTGTGGGGGATT 61.673 66.667 4.53 0.00 35.12 3.01
924 925 4.974721 GTGGTGTGGGCCTGTGGG 62.975 72.222 4.53 0.00 0.00 4.61
925 926 4.974721 GGTGGTGTGGGCCTGTGG 62.975 72.222 4.53 0.00 0.00 4.17
926 927 4.974721 GGGTGGTGTGGGCCTGTG 62.975 72.222 4.53 0.00 0.00 3.66
932 933 2.305314 TTTTGGAGGGGTGGTGTGGG 62.305 60.000 0.00 0.00 0.00 4.61
933 934 0.397816 TTTTTGGAGGGGTGGTGTGG 60.398 55.000 0.00 0.00 0.00 4.17
934 935 3.215671 TTTTTGGAGGGGTGGTGTG 57.784 52.632 0.00 0.00 0.00 3.82
951 952 1.673329 GCGTTGGTGTGGGTTTTGTTT 60.673 47.619 0.00 0.00 0.00 2.83
952 953 0.108567 GCGTTGGTGTGGGTTTTGTT 60.109 50.000 0.00 0.00 0.00 2.83
953 954 1.251527 TGCGTTGGTGTGGGTTTTGT 61.252 50.000 0.00 0.00 0.00 2.83
954 955 0.103937 ATGCGTTGGTGTGGGTTTTG 59.896 50.000 0.00 0.00 0.00 2.44
955 956 0.387565 GATGCGTTGGTGTGGGTTTT 59.612 50.000 0.00 0.00 0.00 2.43
956 957 1.460273 GGATGCGTTGGTGTGGGTTT 61.460 55.000 0.00 0.00 0.00 3.27
957 958 1.901464 GGATGCGTTGGTGTGGGTT 60.901 57.895 0.00 0.00 0.00 4.11
958 959 2.282180 GGATGCGTTGGTGTGGGT 60.282 61.111 0.00 0.00 0.00 4.51
969 970 2.560861 CCGTGTGGTTTGGATGCG 59.439 61.111 0.00 0.00 0.00 4.73
970 971 2.258286 GCCGTGTGGTTTGGATGC 59.742 61.111 0.00 0.00 37.67 3.91
1099 1103 1.753463 CGGCCTCGAAGTAGGTCCT 60.753 63.158 0.00 0.00 38.05 3.85
1447 1461 3.499737 CAAGCATCGCCACGGGAC 61.500 66.667 0.00 0.00 0.00 4.46
1468 1482 5.063880 GGAAGGAAACACATCTGTAACTGT 58.936 41.667 0.00 0.00 0.00 3.55
1470 1484 5.308825 CAGGAAGGAAACACATCTGTAACT 58.691 41.667 0.00 0.00 0.00 2.24
1529 1543 5.774690 ACACAATCCACAGTAAATTCCACAT 59.225 36.000 0.00 0.00 0.00 3.21
1530 1544 5.009510 CACACAATCCACAGTAAATTCCACA 59.990 40.000 0.00 0.00 0.00 4.17
1534 1574 6.312399 TCACACACAATCCACAGTAAATTC 57.688 37.500 0.00 0.00 0.00 2.17
1540 1580 3.250762 CGATTTCACACACAATCCACAGT 59.749 43.478 0.00 0.00 0.00 3.55
1545 1585 5.106555 ACATCTTCGATTTCACACACAATCC 60.107 40.000 0.00 0.00 0.00 3.01
1546 1586 5.931532 ACATCTTCGATTTCACACACAATC 58.068 37.500 0.00 0.00 0.00 2.67
1555 1595 6.594937 TGATGATCACAACATCTTCGATTTCA 59.405 34.615 0.00 0.00 42.89 2.69
1556 1596 7.008440 TGATGATCACAACATCTTCGATTTC 57.992 36.000 0.00 0.00 42.89 2.17
1557 1597 6.990341 TGATGATCACAACATCTTCGATTT 57.010 33.333 0.00 0.00 42.89 2.17
1558 1598 6.457934 GCTTGATGATCACAACATCTTCGATT 60.458 38.462 0.00 0.00 42.89 3.34
1567 1607 4.644498 TCAGAAGCTTGATGATCACAACA 58.356 39.130 2.10 0.00 0.00 3.33
1577 1617 3.314635 GCAAATCGGATCAGAAGCTTGAT 59.685 43.478 2.10 1.06 40.40 2.57
1578 1618 2.679837 GCAAATCGGATCAGAAGCTTGA 59.320 45.455 2.10 0.00 0.00 3.02
1579 1619 2.681848 AGCAAATCGGATCAGAAGCTTG 59.318 45.455 2.10 11.09 0.00 4.01
1580 1620 2.681848 CAGCAAATCGGATCAGAAGCTT 59.318 45.455 14.71 0.00 0.00 3.74
1582 1622 2.012673 ACAGCAAATCGGATCAGAAGC 58.987 47.619 0.00 5.05 0.00 3.86
1609 1671 6.438259 TGATTCAGAACTACTCCTACTTCG 57.562 41.667 0.00 0.00 0.00 3.79
1611 1673 6.603997 ACGATGATTCAGAACTACTCCTACTT 59.396 38.462 0.00 0.00 0.00 2.24
1612 1674 6.038825 CACGATGATTCAGAACTACTCCTACT 59.961 42.308 0.00 0.00 0.00 2.57
1613 1675 6.202937 CACGATGATTCAGAACTACTCCTAC 58.797 44.000 0.00 0.00 0.00 3.18
1614 1676 5.221067 GCACGATGATTCAGAACTACTCCTA 60.221 44.000 0.00 0.00 0.00 2.94
1615 1677 4.440802 GCACGATGATTCAGAACTACTCCT 60.441 45.833 0.00 0.00 0.00 3.69
1616 1678 3.799420 GCACGATGATTCAGAACTACTCC 59.201 47.826 0.00 0.00 0.00 3.85
1617 1679 4.677584 AGCACGATGATTCAGAACTACTC 58.322 43.478 0.00 0.00 0.00 2.59
1618 1680 4.440802 GGAGCACGATGATTCAGAACTACT 60.441 45.833 0.00 0.00 0.00 2.57
1619 1681 3.799420 GGAGCACGATGATTCAGAACTAC 59.201 47.826 0.00 0.00 0.00 2.73
1620 1682 3.181475 GGGAGCACGATGATTCAGAACTA 60.181 47.826 0.00 0.00 0.00 2.24
1621 1683 2.419297 GGGAGCACGATGATTCAGAACT 60.419 50.000 0.00 0.00 0.00 3.01
1622 1684 1.936547 GGGAGCACGATGATTCAGAAC 59.063 52.381 0.00 0.00 0.00 3.01
1623 1685 1.471501 CGGGAGCACGATGATTCAGAA 60.472 52.381 0.00 0.00 35.47 3.02
1624 1686 0.103026 CGGGAGCACGATGATTCAGA 59.897 55.000 0.00 0.00 35.47 3.27
1625 1687 0.103026 TCGGGAGCACGATGATTCAG 59.897 55.000 0.00 0.00 38.06 3.02
1626 1688 2.198183 TCGGGAGCACGATGATTCA 58.802 52.632 0.00 0.00 38.06 2.57
1634 1696 1.594862 GAATTTCAGATCGGGAGCACG 59.405 52.381 0.00 0.00 0.00 5.34
1635 1697 2.611292 CAGAATTTCAGATCGGGAGCAC 59.389 50.000 0.00 0.00 0.00 4.40
1636 1698 2.501316 TCAGAATTTCAGATCGGGAGCA 59.499 45.455 0.00 0.00 0.00 4.26
1637 1699 3.185246 TCAGAATTTCAGATCGGGAGC 57.815 47.619 0.00 0.00 0.00 4.70
1638 1700 4.507710 TGTTCAGAATTTCAGATCGGGAG 58.492 43.478 0.00 0.00 0.00 4.30
1639 1701 4.020218 ACTGTTCAGAATTTCAGATCGGGA 60.020 41.667 6.83 0.00 0.00 5.14
1640 1702 4.256920 ACTGTTCAGAATTTCAGATCGGG 58.743 43.478 6.83 3.87 0.00 5.14
1641 1703 5.445142 CGAACTGTTCAGAATTTCAGATCGG 60.445 44.000 19.56 3.61 43.80 4.18
1642 1704 5.545527 CGAACTGTTCAGAATTTCAGATCG 58.454 41.667 19.56 13.79 42.81 3.69
1643 1705 5.121454 AGCGAACTGTTCAGAATTTCAGATC 59.879 40.000 19.56 3.70 0.00 2.75
1644 1706 4.999950 AGCGAACTGTTCAGAATTTCAGAT 59.000 37.500 19.56 0.00 0.00 2.90
1645 1707 4.212004 CAGCGAACTGTTCAGAATTTCAGA 59.788 41.667 19.56 0.00 39.22 3.27
1646 1708 4.461405 CAGCGAACTGTTCAGAATTTCAG 58.539 43.478 19.56 2.23 39.22 3.02
1647 1709 3.303990 GCAGCGAACTGTTCAGAATTTCA 60.304 43.478 19.56 0.00 46.30 2.69
1648 1710 3.058639 AGCAGCGAACTGTTCAGAATTTC 60.059 43.478 19.56 2.99 46.30 2.17
1649 1711 2.880890 AGCAGCGAACTGTTCAGAATTT 59.119 40.909 19.56 0.00 46.30 1.82
1650 1712 2.498167 AGCAGCGAACTGTTCAGAATT 58.502 42.857 19.56 0.43 46.30 2.17
1651 1713 2.175878 AGCAGCGAACTGTTCAGAAT 57.824 45.000 19.56 0.34 46.30 2.40
1652 1714 3.686622 AGCAGCGAACTGTTCAGAA 57.313 47.368 19.56 0.00 46.30 3.02
1657 1719 0.947244 CCAAAGAGCAGCGAACTGTT 59.053 50.000 0.00 0.00 46.30 3.16
1658 1720 0.179045 ACCAAAGAGCAGCGAACTGT 60.179 50.000 0.00 0.00 46.30 3.55
1660 1722 0.886490 CCACCAAAGAGCAGCGAACT 60.886 55.000 0.00 0.00 0.00 3.01
1661 1723 1.576421 CCACCAAAGAGCAGCGAAC 59.424 57.895 0.00 0.00 0.00 3.95
1662 1724 2.260869 GCCACCAAAGAGCAGCGAA 61.261 57.895 0.00 0.00 0.00 4.70
1663 1725 2.669569 GCCACCAAAGAGCAGCGA 60.670 61.111 0.00 0.00 0.00 4.93
1664 1726 3.741476 GGCCACCAAAGAGCAGCG 61.741 66.667 0.00 0.00 0.00 5.18
1665 1727 2.282745 AGGCCACCAAAGAGCAGC 60.283 61.111 5.01 0.00 0.00 5.25
1666 1728 1.975407 CCAGGCCACCAAAGAGCAG 60.975 63.158 5.01 0.00 0.00 4.24
1667 1729 2.115910 CCAGGCCACCAAAGAGCA 59.884 61.111 5.01 0.00 0.00 4.26
1668 1730 2.116125 ACCAGGCCACCAAAGAGC 59.884 61.111 5.01 0.00 0.00 4.09
1669 1731 2.270986 GCACCAGGCCACCAAAGAG 61.271 63.158 5.01 0.00 36.11 2.85
1670 1732 2.203480 GCACCAGGCCACCAAAGA 60.203 61.111 5.01 0.00 36.11 2.52
1696 1758 2.280524 TGGTTGGGTTGCGACTCG 60.281 61.111 3.59 0.00 0.00 4.18
1697 1759 1.966451 CCTGGTTGGGTTGCGACTC 60.966 63.158 3.59 0.00 0.00 3.36
1698 1760 2.113139 CCTGGTTGGGTTGCGACT 59.887 61.111 3.59 0.00 0.00 4.18
1699 1761 2.203294 ACCTGGTTGGGTTGCGAC 60.203 61.111 0.00 0.00 41.11 5.19
1700 1762 2.112297 GACCTGGTTGGGTTGCGA 59.888 61.111 0.00 0.00 40.06 5.10
1869 1947 3.860605 CGTGGATGGATCGGGCCA 61.861 66.667 4.39 0.00 43.23 5.36
1915 1993 3.649277 CTTGGAGAGGTGGCGGTCG 62.649 68.421 0.00 0.00 0.00 4.79
1952 2030 2.278013 GTCGTCGTCGAGGATGGC 60.278 66.667 23.17 19.53 46.96 4.40
2056 2134 3.691342 TCGGGCCACTCGAACAGG 61.691 66.667 4.39 0.00 33.42 4.00
2273 2351 2.440817 GGGGTGTGGGGATCTACGG 61.441 68.421 0.00 0.00 0.00 4.02
2373 2463 7.959109 CACATCACATAAATATTCGCACATAGG 59.041 37.037 0.00 0.00 0.00 2.57
2380 2470 6.714492 TGTGTCACATCACATAAATATTCGC 58.286 36.000 0.18 0.00 42.36 4.70
2386 2476 9.932207 ATTCATTTTGTGTCACATCACATAAAT 57.068 25.926 6.48 5.92 45.73 1.40
2390 2480 6.146510 GCAATTCATTTTGTGTCACATCACAT 59.853 34.615 6.48 0.00 45.73 3.21


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.