>input_sequence_80746
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-------------------------------------------ATGGCCCAGCCACCGGCGGCGACGACTCCGGCAGCGG
CGTACGGGTGCGCGGCGTGCGGCGCGGACCTGAACCTGTCGGCCTCCCACCTGTACCCGGCGAGGACCTACTTCGAGGCC
GGGAACAAGGGCACGCTGTCCTTCAGCTGGGTGGACGAGTCGCGGCTGCGGTTCGCGGCGGAGGACCGGATCCGCCCCTT
CTTCGAGACGCTCGACTACTGGGGCATCCAGCGGAAGCGCACCCGCGTCAGCTGCGACGCCTGCGGCAAGCTCCTCGGCC
ACGTCTACGACGACGGGCCCCCGCTCATGGACGGCACCGGCCAGCTCGGAATGGGCCCCAGCCAGGTCGTCCCCCGCCGG
CCCAGGTACCGGTTCAAGGTCAAGGCCGTCACCGCCGCCGGTTCCTCC---------GCCGCCGCCGCGCGCTGA-----
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>chr5A_1_TraesCS5A01G504500
GTTGACGATATCTACGCCGACGGGTCTATGCCGACGGCAGCCGATGGCAAAGGACCTATGCCGACGACCCCTGGCCGTAG
GCATAGACCACGAGTCCGGTAGTGTCTCCATCAAGTAACATCCAGAGGCGGACATAGTCAAAGGGAAAATGTCTATCTCA
TATGACAGTAAGAATACTGCTGGTCGGGGCAAAGAAAGTCAGGAGGTGGCCGGATGGCCGAATGCTCGCTGGTGCAAACC
TCCTCAGGGGTGGCATAAGTTGAATGTGGATGGAGCCTTCGACGAGGAGCTTGGCGTTGGTGGAGCAGGGATGGTCCTAC
GCGATGATACGGGTGGTGTCATATACTCTTCTTGCCGCTACCTTAGAGCCTGCTCATCGGCTTTGGAGGCAGAGCTGGCA
GCCTGCTTGGAGGGTATCAACATCGCAAGCGCATGGAGTACAGCCCCAATGATCCTTGAGACTGGCAGTCTGGTTGCTGC
CAACATGCTTAGAGAAAGAGAGATAAATAGATCGCCATGTGCGTCCTTTGTAGGGCAAATAAAGAATCTTCTTGCGGAGA
TGAGTGAGAATGGTATATCTCATGTAGGTAGGAAGGGGAACATTGTAGCATATGAGCTAGCCAGGATGGGGAGAACAGAG
CAGCGCACTGCGGTTTGGTTGCGCGGGGGGCCGGATAATATTGGCAACTTATGCCAAGCAGACTGTAATGATCCTTCTTA
ATTAATGAAAACCTTTCATTCGCAAAAAAAAAAGATAAACACGATCAGGTTGTCTGTGGTTTTATGGGTTCGTGATGTGA
CGTCTGAATCTGTGTTTGCGCGTCCACGTTGACTTTAACCAGTCGCCGAACACAAGCTTCTCAACGCCCGGTCCAACGCA
GCAAAACCGTCCTTCACCCGCAAGGAACCACCCCCTCCAAATCCCCCACAGGCCCACACCACCCCTCCAAAAAACAAAAC
CCACACCAACG---CATCCAAACCACACGGCCACGACCGACCGATGGCCCAGCCACCGGCGGCGACGACTCCGGCAGCGG
CGTACGGGTGCGCGGCGTGCGGCGCGGACCTGAACCTGTCGGCCTCCCACCTGTACCCGGCGAGGACCTACTTCGAGGCC
GGGAACAAGGGCACGCTGTCCTTCAGCTGGGTGGACGAGTCGCGGCTGCGGTTCGCGGCGGAGGACCGGATCCGCCCCTT
CTTCGAGACGCTCGACTACTGGGGCATCCAGCGGAAGCGCACCCGCGTCAGCTGCGACGCCTGCGGCAAGCTCCTCGGCC
ACGTCTACGACGACGGGCCCCCGCTCATGGACGGCACCGGCCAGCTCGGAATGGGCCCCAGCCAGGTCGTCCCCCGCCGG
CCCAGGTACCGGTTCAAGGTCAAGGCCGTCACCGCCGCCGGTTCCTCC---------GCCGCCGCCGCGCGCTGACCGCT
GAGTTGAGAAGCTT-GATTCGTCCCGTGGCGATGCTTGCTTACAGTTACAGATGTGTTTCCTTCCTGCTGTAAATCAGTA
CTACTACTACTAGATGTAAAAAAT--------------------------GTGGAATTTACTGTGGATTGTGTGTGAAAT
CGAAGATGTTGTGATCATCAAGC----------------------TTCTGATCCGATTTGCTGTGAAAATCGAAGTAGGA
GTAGTTCTGAATCATCGTGCTCCCGATCTGAAATTCTGAACAGTTCGCTGCTCTTTGGTGGCCTGGTGCCTTCGCCGCGA
GTCGCAACCCAACC--AGGTCAAGTCGCCACTCAGCCCGACCCGACCCCGACCCACAAAAGGAACCCAACCGACGACCCG
ACCC--------------ACACGACGCACCACCATGGCCGTGGCCGCACGCGCACGGGGCTCGCCGCTCCTCCGCGCCCT
CTCCGGCACGAGGGCGCGGCCGCCGCTGGCCCGATCCATCCACGAGGGGCCCGACACCATCGACGAGCTCCTCGACCGCC
ACCTCTCCAAGAAGGGGCCCACCCCCTCCGCCATCCTCGACGACGACGCGGCGGAGGCCCTGGCGCGGCGGAGGCTGACG
AGCTCGCGGCGGGAGGCGCTGGGGCTGTACCGGGACATCCTGCGCGCGACGCGCCTGTTCGAGTGGCCCGACGAGCGCGG
CGTGCCGTGGCGCGACACGCTGCGCGCCAACGCGCGCCGCGAGTTCGAGGAGGCCCGCGGCGAGCGCGACCCGGAGGTGG
TCGCGCGGCTCCTCATCGGCGGCCGCGATGCCGTCGACCAGGCCCTCGAGCGCGTCGCCGACGCCTCCCGCCGCATGGTC
CAGGCCGAGGAGGCCAAGCGCCGCGGCGGGCCGTAGAT--CCCCACACCCCCACCCCGACTCGATGCGCCCCATGCTTCC
---TCTTCTTCTTCAGCTGCTGCTGCT------TATATTTGTTAATTT-GGTTGTAAAATTCCCTATGTGCGAATATTTA
TGTGATGTG-ACACAAAATGAATTGCTTATGAA
>chr2D_105
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------------------------TCTCCATCAAGCAACATCCAGAGATGGACATAGTCAAAGGGAAAATGTCTATCTCA
TATGATAGTAAGAATACTGTT-GTTGGGCCAAAGAAAGTCAGGAGGTGGCCGGCTGGCCCGATGCTCGCTGGTGCAAACC
ACCTCAGGGGTGGCATAAGCTGAAT---GATGGAGCCTT---CGAGGAGCTTGGTGTTGGTGGAGCAGGGAAGATCCTAC
GCGATGATACGGGTAGTGTCATATACTCTTCTTGCCGCTACCTTAGAGCCTGCTCATCGGCTTTGGAGGCGGAGCTGGCG
GCCTGCATGGAGGGCATCAACATCGCAAGTGCATGGAGTACGA-CCCAATGATCCTCGAGACTGGCAGTTTGGTTGCTGT
CAACATGCTTAGAGAAAGACAGATAAATAGATCGTCATGTACGTCCTTTTTAGGGCAAATAAAGAAACTTC------AGA
TGAGTGAGCATGCTACACATCATGTAGGTAGGAAGGGGAACATTGTAGCACATGAGCTAGCTAGGATGGGGAGAATAGAG
CAGCGCC-----GTTTGGTTGCGTGGGGGGCGA-ATAATATTGGCAACTTATGCCAAGCAGACTATAATGATCCTCCTTA
ATCAATGAAAACCTTTCATTCGCAAAAAA---------------------------------------------------
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>chr4D_938
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---------------------------------------------------------ACCACCCCTCCAAATCC-----C
CCACACCAAACAACCATCCAAACAACACGGCCACGATCGACCGATGGCCCAGCCACCGGCTCCGGCGACTCCGGCGGCGG
CGTACGGGTGCGCGGCGTGCGGCGCGGACCTGAACCTGTCGGCCTCCAACCTGTACCCGGCGGGGACCTACTTCGAGGCG
GGGAACAAGGGCACGCTGTCCTTCAGCTGGGTGGACGAGTCGCGGCTGCGGTTCGCGGCGGAGGACCGGATCCGGCCCTT
CTTCGAGACGCTCGACTACTGGGGCATCCAGCGGAAGCGCACCCGCGTCAGCTGCGACGCCTGCGGCAGGCTCCTCGGCC
ACGTCTACGACGACGGGCCGCCGCTCATGGACGGCACCGGCCAGCTCGGGATGGGCCCTAGCCAGGTCGTCCCCCGCCGG
CCCAGGTACCGGTTCAAGGTCAAGGCCGTCACCGCCGCCGGTTCCTCCT------CCGCCGCCGCCGCGCGCTGACCGCC
GAGTTGTGAAGCTTTGATTCATCCCGCGGCGATGCTTGCTTGCGGTTACAGATGTGTTTCCTTCCTGCTGTAGATCAGC-
--ACTACTACTAGATGTAAAAATCGTTGGTTGCGAAATGAACTTGTACGAGTGAAATTTGCTGTAAATTGTGTGAAG-AT
CGAAGACGGTGTGATCCATCAACCTTCGTTTTAACTGTTCTGAATTTCTGATCTGATTTGCTGTGAAAATAGC-------
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--CGCAACCCAACC--AGGTCAAGTCGCCACTCAGCCCGACCCGACCCCGACCCACAAAAGGAACCCAACCGACGACCCA
ACCCGACC----CGACCCTAGCGACGCACCTCAATGGCCATGGCCGCACGCCCACGCGGCTCGCCGCTCCTCCGCGCCCT
CGCCGGCACGAGGG---GGCCGCCGCGGGCCCGATCCATCCACGAGGGGCCCGACACCATCGACGAGCTCCTGGACCGCC
ACCTCTCCAAGAAGTCCC------------CCGCCCTCGACGACGACGCGGCGGAGGCCCTGGCGCGGCGGCGGCTGACG
AGCTCGCGGCGGGAGGCGCTGGGGCTGTACCGGGACATCCTGCGGGCGACGCGGCTGTTCGAGTGGCCCGACGAGCGCGG
CGTGCCGTGGCGCGACACGCTGCGCGCCAACGCGCGCCGCGAGTTCGAGGAGGCCCGCGGCGAGCGCGACCCGGAGGTGG
TCGCGCGGCTCCTCATCGGCGGCCGCGACGCCGTCGACCAGGCCCTGGAGCGCGTCGCCGACGCCTCGCGCCGCATGGTC
CAGGCCGAGGAGGCCAAGCGCCGCGGCGGGGCGTAGATCCCCCCACACCCCCACCCCGACTCGATGCGCCCCATGCTTCC
TCTTCTTCTTCTTCAGCTGCTGCTGCT------TATGTTTGTTAATTTTTGTTGTAAAATTTACTATGTACGAA------
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>chr4B_960
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-------------------------------------------------------------------------------C
CCACGCCAAAC---CATCCAAATCACACGGCCACGACCGACCGATGGCCCAGCCACCGGCGACTCCGGCGATGGCGGCGG
CGTACGGGTGTGCGGCATGCGGCGCGGACCTGAACCTGTCCGCCTCCCACCTCTACCCGGCGGGGACCTACTTCGAGGCG
GGGAACAAGGGCACGCTGTCCTTCAGCTGGGTGGACGAGTCGCGGCTGCGGTTCGCGGCGGAGGACCGGATCCGCCCCTT
CTTCGAGACGCTCGACTACTGGGGCATCCAGCGGAAGCGCACCCGCGTCAACTGCGACGCCTGCGGCAAGCTCCTCGGCC
ACGTCTACGACGACGGCCCTCCGCTCATGGAGGGCACAGGCCAGCTCGGGATGGGCCCCAGCCAGGTCGTCCCCCGCCGG
CCCAGGTACCGGATCAAGATCAAGGCCGTCACGGCCGCCGGTTCCTCCGCCTCCGCCGCCGCCGCCGCGCGCTGACCGCT
GAGTTGAGAAGCTT-GATTCATCCCGTGACGATGCT--------------------------------------------
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>chr4B_1706
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------ACCCAACCAGAGGTCAAGTCGCCACTCAGCCCGACCCGACCCCGACCCACAAAAGGAACCCAGCCGACGACCCG
ACCCGACCGACCCGACCCACACGACGCACCACCATGGCCGTGGCCGCACGCGCCCGCAGCTCGCCGCTCCTCCGCGCCCT
CGCCGGCACGAGGCCACCGCCGCCGCGGCCCCGATCCATCCACGAGGGGCCCGACACCATCGACGAGCTCCTGGACCGCC
ACCTCTCCAAGAAGTCCCCCACCCCCTCCCCCGCCCTCGACGACGACGCGGCGGAGGCCCTGGCGCGGCGGCGGCTGACG
AGCTCGCGGCGGGAGGCGCTGGGGCTGTACCGGGACATCCTGCGGGCGACGCGGCTGTTCGAGTGGCCCGACGAGCGCGG
CGTGCCGTGGCGCGACACGCTGCGCGCCAACGCGCGCCGCGAGTTCGAGGAGGCCCGCGGCGAGCGCGACCCGGAGGTGG
TCGCGCGGCTCCTCATCGGCGGCCGCGACGCCGTCGAGCAGGCCCTGGAGCGCGTCGCCGACGCCTCCCGCCGCATGGTC
CAGGCCGAGGAGGCCAAGCGCCGCGGCGGGGCCTAGAT--CCCCCCACCCCCACCCCGACTCGATGCGCCCCATACGTCC
TCTTCTTCTTCTTCAGCTGCTGCTGCTGCTGCTTATGTCTCTTAA-TTTGGTTGTAAAAGTCACTATGTACGAAGGTTTG
TGTGATGCTCACACAAAATGAGTTGCTTATGAA
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSS-----------S-----------SS-------------------------------
-----S-------------S-S--S---S------------------------S-----SS-------------------
S------------------S-----SSS-----------SSS------------S----------------S-S------
--------------S-------------------------------------------------------S--------S
------S-------S--------------S-----------SSS------------S------------S---------S
-------------------S--------------S-----S--------S----------------S----SSSSSS---
--------S---S--S-SS-------------------------------S----------S-------------S----
------SSSSSS-----------S-------SSS------------------------------S----------S----
--S--------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------SSSSSSSS-
---------SS--------------------------------------------------S--S----------S----
--------------------------------------------------------------S----------------S
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-------------------S-----------------------------S------------------------------
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--------------------S--------------------S-S----------------------------S-----SS
SS--------------------SS-----------------------------S-----S----SS--------SSSS--
------S-S-------SSSS-S-------------------------------S----------------S-SSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SS------------------------------------------------------------------------------
--------------------------------------------------------S-----------------------
-S-------------S----------S---------------------------------------------S-------
--------------SSS------------S--SS-------------------------------------S--------
--------------------------------------------S--------S--------------------------
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----------------------------S-----------------S---------------------------------
------------------------------S-------------------------------------------------
------------------------------------S-------------------------S------S----SS---S
-------SS------------S-----------
>forward_805
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-----------------------------------------------------------------GGGTTCGTGATGTGA
CGTCT---------------------------------------------------------------------------
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>reverse_1686
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-----TCTGAATCATCGTGCTCCCG-------------------------------------------------------
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