AutoCloner

Multiple sequence alignment - TraesCS5A01G498700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS5A01G498700	chr5A	100.000	3340	0	0	1	3340	665768599	665765260	0.000000e+00	6168
1	TraesCS5A01G498700	chr5A	97.398	538	14	0	418	955	470919822	470919285	0.000000e+00	917
2	TraesCS5A01G498700	chr4B	94.633	1677	79	4	956	2621	617438536	617436860	0.000000e+00	2588
3	TraesCS5A01G498700	chr4B	89.969	648	58	3	2692	3338	617427185	617426544	0.000000e+00	830
4	TraesCS5A01G498700	chr4B	91.892	111	8	1	8	117	617438636	617438526	1.600000e-33	154
5	TraesCS5A01G498700	chr4D	96.653	1434	40	3	956	2384	484726611	484725181	0.000000e+00	2375
6	TraesCS5A01G498700	chr4D	87.634	744	81	4	2598	3340	484724614	484723881	0.000000e+00	854
7	TraesCS5A01G498700	chr4D	93.738	543	32	2	415	955	464311136	464311678	0.000000e+00	813
8	TraesCS5A01G498700	chr6A	97.217	539	14	1	418	955	21582992	21582454	0.000000e+00	911
9	TraesCS5A01G498700	chr6A	94.426	305	12	4	117	416	21584090	21583786	6.530000e-127	464
10	TraesCS5A01G498700	chr4A	96.858	541	17	0	415	955	13268056	13268596	0.000000e+00	905
11	TraesCS5A01G498700	chr5D	94.717	530	27	1	429	957	458645199	458644670	0.000000e+00	822
12	TraesCS5A01G498700	chr7B	93.923	543	26	3	415	955	69357331	69357868	0.000000e+00	813
13	TraesCS5A01G498700	chr7B	92.027	301	16	5	117	411	69356228	69356526	1.850000e-112	416
14	TraesCS5A01G498700	chr7D	93.382	544	36	0	418	961	531991804	531991261	0.000000e+00	806
15	TraesCS5A01G498700	chr7D	91.349	289	16	5	136	416	531992915	531992628	1.450000e-103	387
16	TraesCS5A01G498700	chr1D	93.916	526	30	2	430	955	365973080	365972557	0.000000e+00	793
17	TraesCS5A01G498700	chr2D	92.976	541	28	2	415	955	24440851	24441381	0.000000e+00	780
18	TraesCS5A01G498700	chr3D	91.558	308	18	4	112	411	549633467	549633160	5.150000e-113	418
19	TraesCS5A01G498700	chr3D	91.973	299	16	5	117	411	564350527	564350821	2.400000e-111	412
20	TraesCS5A01G498700	chr5B	91.722	302	17	5	117	411	688128315	688128015	2.400000e-111	412
21	TraesCS5A01G498700	chr5B	89.753	283	21	6	136	411	688021983	688021702	4.100000e-94	355
22	TraesCS5A01G498700	chr2A	89.701	301	22	5	117	411	125457751	125457454	3.150000e-100	375
23	TraesCS5A01G498700	chr6D	91.176	272	15	4	147	411	447047502	447047233	8.810000e-96	361
24	TraesCS5A01G498700	chr2B	85.870	92	13	0	399	490	545828700	545828791	7.630000e-17	99

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS5A01G498700	chr5A	665765260	665768599	3339	True	6168.0	6168	100.0000	1	3340	1	chr5A.!!$R2	3339
1	TraesCS5A01G498700	chr5A	470919285	470919822	537	True	917.0	917	97.3980	418	955	1	chr5A.!!$R1	537
2	TraesCS5A01G498700	chr4B	617436860	617438636	1776	True	1371.0	2588	93.2625	8	2621	2	chr4B.!!$R2	2613
3	TraesCS5A01G498700	chr4B	617426544	617427185	641	True	830.0	830	89.9690	2692	3338	1	chr4B.!!$R1	646
4	TraesCS5A01G498700	chr4D	484723881	484726611	2730	True	1614.5	2375	92.1435	956	3340	2	chr4D.!!$R1	2384
5	TraesCS5A01G498700	chr4D	464311136	464311678	542	False	813.0	813	93.7380	415	955	1	chr4D.!!$F1	540
6	TraesCS5A01G498700	chr6A	21582454	21584090	1636	True	687.5	911	95.8215	117	955	2	chr6A.!!$R1	838
7	TraesCS5A01G498700	chr4A	13268056	13268596	540	False	905.0	905	96.8580	415	955	1	chr4A.!!$F1	540
8	TraesCS5A01G498700	chr5D	458644670	458645199	529	True	822.0	822	94.7170	429	957	1	chr5D.!!$R1	528
9	TraesCS5A01G498700	chr7B	69356228	69357868	1640	False	614.5	813	92.9750	117	955	2	chr7B.!!$F1	838
10	TraesCS5A01G498700	chr7D	531991261	531992915	1654	True	596.5	806	92.3655	136	961	2	chr7D.!!$R1	825
11	TraesCS5A01G498700	chr1D	365972557	365973080	523	True	793.0	793	93.9160	430	955	1	chr1D.!!$R1	525
12	TraesCS5A01G498700	chr2D	24440851	24441381	530	False	780.0	780	92.9760	415	955	1	chr2D.!!$F1	540

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
114	115	0.248012	TTCAGAACCGCATCGCCTTA	59.752	50.0	0.00	0.0	0.00	2.69	F
882	1723	0.341961	TAGTGGGGTCTACCAGCCAT	59.658	55.0	0.81	0.0	45.63	4.40	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1088	1929	0.535780	TTCTGTGAGCAGCTGGGTTG	60.536	55.0	17.12	0.00	42.29	3.77	R
2635	3871	0.031585	TATGCACGTACGCTCATCCC	59.968	55.0	21.15	2.72	0.00	3.85	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
66	67	4.683832	ACTATCTCTACCGTTCATTGCAC	58.316	43.478	0.00	0.00	0.00	4.57
104	105	4.846779	TTTCCTGGAAAATTCAGAACCG	57.153	40.909	19.14	0.00	34.36	4.44
106	107	1.885887	CCTGGAAAATTCAGAACCGCA	59.114	47.619	0.00	0.00	34.36	5.69
107	108	2.493278	CCTGGAAAATTCAGAACCGCAT	59.507	45.455	0.00	0.00	34.36	4.73
108	109	3.428045	CCTGGAAAATTCAGAACCGCATC	60.428	47.826	0.00	0.00	34.36	3.91
109	110	2.161410	TGGAAAATTCAGAACCGCATCG	59.839	45.455	0.00	0.00	0.00	3.84
110	111	2.177173	GAAAATTCAGAACCGCATCGC	58.823	47.619	0.00	0.00	0.00	4.58
111	112	0.451783	AAATTCAGAACCGCATCGCC	59.548	50.000	0.00	0.00	0.00	5.54
112	113	0.392998	AATTCAGAACCGCATCGCCT	60.393	50.000	0.00	0.00	0.00	5.52
113	114	0.392998	ATTCAGAACCGCATCGCCTT	60.393	50.000	0.00	0.00	0.00	4.35
114	115	0.248012	TTCAGAACCGCATCGCCTTA	59.752	50.000	0.00	0.00	0.00	2.69
115	116	0.464036	TCAGAACCGCATCGCCTTAT	59.536	50.000	0.00	0.00	0.00	1.73
173	176	0.549950	ACCAGCTAGCCAATCAGCAT	59.450	50.000	12.13	0.00	40.36	3.79
261	266	3.617263	GTGTATTTTCTGCACTAGGACCG	59.383	47.826	0.00	0.00	37.48	4.79
262	267	2.403252	ATTTTCTGCACTAGGACCGG	57.597	50.000	0.00	0.00	0.00	5.28
303	311	2.012237	CATGCGTGACCATCTCTGC	58.988	57.895	0.00	0.00	0.00	4.26
882	1723	0.341961	TAGTGGGGTCTACCAGCCAT	59.658	55.000	0.81	0.00	45.63	4.40
915	1756	6.040278	TCAAAGCAATGTTTGTGGTAGATTCA	59.960	34.615	7.69	0.00	38.38	2.57
1212	2059	4.572571	ACCCAAGAACCGCGGCAA	62.573	61.111	28.58	0.00	0.00	4.52
1386	2233	4.779733	AGCCGACCTGGATCCCGT	62.780	66.667	9.90	5.15	42.00	5.28
2098	2945	0.321671	CTCGTCAAGTGGGTGGACAT	59.678	55.000	0.00	0.00	0.00	3.06
2099	2946	0.762418	TCGTCAAGTGGGTGGACATT	59.238	50.000	0.00	0.00	0.00	2.71
2251	3098	2.126424	GCTCGGTTCGCTCTTCGT	60.126	61.111	0.00	0.00	39.67	3.85
2384	3233	1.338200	ACAATCACGGTGAAGAGAGCC	60.338	52.381	15.72	0.00	0.00	4.70
2399	3250	4.922206	AGAGAGCCAACCAATTTGTGATA	58.078	39.130	0.00	0.00	32.71	2.15
2414	3265	5.630415	TTGTGATAGGATGGTTAGAAGGG	57.370	43.478	0.00	0.00	0.00	3.95
2415	3266	4.631234	TGTGATAGGATGGTTAGAAGGGT	58.369	43.478	0.00	0.00	0.00	4.34
2420	3271	1.134491	GGATGGTTAGAAGGGTCGTGG	60.134	57.143	0.00	0.00	0.00	4.94
2424	3275	3.175594	TGGTTAGAAGGGTCGTGGTATT	58.824	45.455	0.00	0.00	0.00	1.89
2438	3289	4.127171	CGTGGTATTTCTAACCCATCAGG	58.873	47.826	0.00	0.00	43.78	3.86
2441	3292	5.998363	GTGGTATTTCTAACCCATCAGGATC	59.002	44.000	0.00	0.00	39.89	3.36
2455	3306	6.264067	CCCATCAGGATCCAAATTCTAAACTC	59.736	42.308	15.82	0.00	38.24	3.01
2456	3307	6.017605	CCATCAGGATCCAAATTCTAAACTCG	60.018	42.308	15.82	0.00	36.89	4.18
2457	3308	6.294361	TCAGGATCCAAATTCTAAACTCGA	57.706	37.500	15.82	0.00	0.00	4.04
2458	3309	6.889198	TCAGGATCCAAATTCTAAACTCGAT	58.111	36.000	15.82	0.00	0.00	3.59
2459	3310	8.018537	TCAGGATCCAAATTCTAAACTCGATA	57.981	34.615	15.82	0.00	0.00	2.92
2466	3317	9.042008	TCCAAATTCTAAACTCGATATTAGTGC	57.958	33.333	13.80	0.00	32.27	4.40
2531	3383	1.278127	TCAATGGGGAGAAGACGTTCC	59.722	52.381	0.00	0.00	32.48	3.62
2547	3399	2.480759	CGTTCCCGTCGATTATGAAGGT	60.481	50.000	0.00	0.00	35.97	3.50
2550	3402	2.100252	TCCCGTCGATTATGAAGGTGTC	59.900	50.000	0.00	0.00	35.97	3.67
2558	3410	0.973632	TATGAAGGTGTCTGTGGCGT	59.026	50.000	0.00	0.00	0.00	5.68
2562	3414	0.393808	AAGGTGTCTGTGGCGTGTTT	60.394	50.000	0.00	0.00	0.00	2.83
2565	3417	0.944386	GTGTCTGTGGCGTGTTTGAT	59.056	50.000	0.00	0.00	0.00	2.57
2590	3442	1.337728	ACAAATGATGTGCCGACTCGA	60.338	47.619	0.00	0.00	41.93	4.04
2594	3789	0.817654	TGATGTGCCGACTCGATCTT	59.182	50.000	0.00	0.00	0.00	2.40
2621	3816	0.391597	TGCTTATAGGGGTAGCGTGC	59.608	55.000	0.00	0.00	37.73	5.34
2622	3817	0.391597	GCTTATAGGGGTAGCGTGCA	59.608	55.000	0.00	0.00	0.00	4.57
2623	3818	1.872653	GCTTATAGGGGTAGCGTGCAC	60.873	57.143	6.82	6.82	0.00	4.57
2631	3867	1.073177	GGTAGCGTGCACGTATGTTT	58.927	50.000	36.80	19.02	42.22	2.83
2635	3871	4.147653	GGTAGCGTGCACGTATGTTTATAG	59.852	45.833	36.80	8.30	42.22	1.31
2665	3901	1.783284	ACGTGCATATGTATGAGCGG	58.217	50.000	18.54	0.00	36.99	5.52
2666	3902	1.068588	ACGTGCATATGTATGAGCGGT	59.931	47.619	18.54	0.00	36.99	5.68
2668	3904	2.096762	CGTGCATATGTATGAGCGGTTG	60.097	50.000	7.18	0.00	35.75	3.77
2669	3905	2.872245	GTGCATATGTATGAGCGGTTGT	59.128	45.455	4.29	0.00	35.75	3.32
2690	3926	8.493547	GGTTGTGTCTTTACTATGTTAACTCAC	58.506	37.037	7.22	0.00	0.00	3.51
2758	3994	2.003301	GCGAGCCAACTTAAGGAAGAG	58.997	52.381	7.53	0.00	36.45	2.85
2764	4000	5.635120	AGCCAACTTAAGGAAGAGAATGTT	58.365	37.500	7.53	0.00	36.45	2.71
2789	4025	4.789075	TAGCGCTTGCCGGTCGAC	62.789	66.667	18.68	7.13	45.97	4.20
2802	4038	1.529152	GGTCGACCGGCCCAAATTTT	61.529	55.000	20.85	0.00	32.85	1.82
2814	4050	3.119173	GCCCAAATTTTGATCGGACATCA	60.119	43.478	10.72	0.00	0.00	3.07
2867	4103	8.060931	TCATATTTCTTCCCTCATCTCGATAG	57.939	38.462	0.00	0.00	0.00	2.08
2879	4115	4.515567	TCATCTCGATAGTAGACAACGCAT	59.484	41.667	0.00	0.00	37.40	4.73
2887	4123	1.017177	TAGACAACGCATTGCCCGAC	61.017	55.000	2.41	0.00	39.66	4.79
2912	4148	0.465460	GTTGTCCCTGCCACAGTTCA	60.465	55.000	0.00	0.00	0.00	3.18
2979	4215	2.605823	GCTGCATCGATACTAGCTCGTT	60.606	50.000	16.15	4.63	37.40	3.85
3011	4247	1.322442	ATCATCGACGAGGATGCTCA	58.678	50.000	22.87	0.00	42.78	4.26
3014	4250	0.817654	ATCGACGAGGATGCTCACAA	59.182	50.000	15.10	0.00	0.00	3.33
3040	4277	0.183971	TTGAAGTGCCGGGGAGAAAA	59.816	50.000	2.18	0.00	0.00	2.29
3062	4299	1.446792	CTCGCAGCACATCCGAAGT	60.447	57.895	0.00	0.00	0.00	3.01
3151	4388	4.759893	CGACGACAAAGCAGCGCG	62.760	66.667	0.00	0.00	0.00	6.86
3192	4429	2.906897	CAGTTGCAGCACCCCGTT	60.907	61.111	2.55	0.00	0.00	4.44
3213	4450	1.271379	CCCCTTGTCGTCTCCAACATT	60.271	52.381	0.00	0.00	0.00	2.71
3223	4460	0.963962	CTCCAACATTTGCAGGTGCT	59.036	50.000	3.18	0.00	42.66	4.40
3290	4527	2.159366	CGGTTGTAGCAAAACACCAACA	60.159	45.455	0.00	0.00	37.67	3.33

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
35	36	9.886132	ATGAACGGTAGAGATAGTTTGTTAATT	57.114	29.630	0.00	0.00	0.00	1.40
45	46	3.731216	CGTGCAATGAACGGTAGAGATAG	59.269	47.826	5.73	0.00	37.39	2.08
66	67	3.937706	AGGAAAATCTGAGCTGTTCATCG	59.062	43.478	0.00	0.00	34.68	3.84
104	105	0.658536	GCTTTGCGATAAGGCGATGC	60.659	55.000	0.00	0.00	39.38	3.91
106	107	1.202580	AGAGCTTTGCGATAAGGCGAT	60.203	47.619	0.00	0.00	35.06	4.58
107	108	0.175760	AGAGCTTTGCGATAAGGCGA	59.824	50.000	0.00	0.00	35.06	5.54
108	109	1.009829	AAGAGCTTTGCGATAAGGCG	58.990	50.000	0.00	0.00	35.06	5.52
109	110	3.494045	AAAAGAGCTTTGCGATAAGGC	57.506	42.857	0.00	0.00	32.36	4.35
110	111	5.332707	GGTAAAAAGAGCTTTGCGATAAGG	58.667	41.667	0.00	0.00	32.36	2.69
111	112	5.022021	CGGTAAAAAGAGCTTTGCGATAAG	58.978	41.667	0.00	0.00	32.36	1.73
112	113	4.142773	CCGGTAAAAAGAGCTTTGCGATAA	60.143	41.667	0.00	0.00	32.36	1.75
113	114	3.372822	CCGGTAAAAAGAGCTTTGCGATA	59.627	43.478	0.00	0.00	32.36	2.92
114	115	2.161609	CCGGTAAAAAGAGCTTTGCGAT	59.838	45.455	0.00	0.00	32.36	4.58
115	116	1.533731	CCGGTAAAAAGAGCTTTGCGA	59.466	47.619	0.00	0.00	32.36	5.10
173	176	9.860898	GTATATGAGTGCTTATGTGATGTCATA	57.139	33.333	0.00	0.00	31.94	2.15
261	266	5.295950	CATGTCTCCTTCATCTGACATACC	58.704	45.833	7.07	0.00	45.01	2.73
262	267	4.749099	GCATGTCTCCTTCATCTGACATAC	59.251	45.833	7.07	0.00	45.01	2.39
303	311	5.120830	GCTTCATAAGTACTTGTGTGTCAGG	59.879	44.000	25.82	12.41	34.03	3.86
412	425	8.767085	CACTCATTTTAGAAAACACATTGCAAT	58.233	29.630	5.99	5.99	0.00	3.56
459	1295	9.599322	CACTAGATTCAGAAAACACATTACAAC	57.401	33.333	0.00	0.00	0.00	3.32
718	1555	5.233476	GCTGCATGCACGTACTAAATACTTA	59.767	40.000	18.46	0.00	42.31	2.24
845	1686	5.335976	CCCACTATGCTTTTGTTTCTCCTTC	60.336	44.000	0.00	0.00	0.00	3.46
882	1723	6.215121	CACAAACATTGCTTTGAGATTGGTA	58.785	36.000	14.48	0.00	35.46	3.25
1088	1929	0.535780	TTCTGTGAGCAGCTGGGTTG	60.536	55.000	17.12	0.00	42.29	3.77
1340	2187	2.422832	GTCTTTCCACTCGACGAGGTAT	59.577	50.000	27.39	5.21	33.35	2.73
1742	2589	3.368190	CTCCTGCACGAGCTCCAGG	62.368	68.421	24.16	24.16	45.88	4.45
2098	2945	3.691342	CCCACGTCGCCTCCTCAA	61.691	66.667	0.00	0.00	0.00	3.02
2099	2946	4.671590	TCCCACGTCGCCTCCTCA	62.672	66.667	0.00	0.00	0.00	3.86
2251	3098	2.033577	CGTTCCATCGACACGACAAAAA	60.034	45.455	0.00	0.00	39.18	1.94
2336	3185	6.373186	GATTGCAATGTCTCAATCTCATGA	57.627	37.500	18.59	0.00	43.02	3.07
2346	3195	7.007725	CGTGATTGTTTAAGATTGCAATGTCTC	59.992	37.037	18.59	2.72	32.47	3.36
2362	3211	2.808543	GCTCTCTTCACCGTGATTGTTT	59.191	45.455	1.09	0.00	0.00	2.83
2384	3233	5.920193	ACCATCCTATCACAAATTGGTTG	57.080	39.130	0.00	0.00	43.43	3.77
2399	3250	1.831736	CACGACCCTTCTAACCATCCT	59.168	52.381	0.00	0.00	0.00	3.24
2414	3265	4.761975	TGATGGGTTAGAAATACCACGAC	58.238	43.478	0.00	0.00	37.40	4.34
2415	3266	4.141801	CCTGATGGGTTAGAAATACCACGA	60.142	45.833	0.00	0.00	37.40	4.35
2420	3271	6.187727	TGGATCCTGATGGGTTAGAAATAC	57.812	41.667	14.23	0.00	36.25	1.89
2424	3275	5.732331	ATTTGGATCCTGATGGGTTAGAA	57.268	39.130	14.23	0.00	36.25	2.10
2441	3292	8.283291	GGCACTAATATCGAGTTTAGAATTTGG	58.717	37.037	18.80	6.69	31.36	3.28
2504	3356	1.402968	CTTCTCCCCATTGAACGCATG	59.597	52.381	0.00	0.00	0.00	4.06
2505	3357	1.281867	TCTTCTCCCCATTGAACGCAT	59.718	47.619	0.00	0.00	0.00	4.73
2531	3383	3.116300	CAGACACCTTCATAATCGACGG	58.884	50.000	0.00	0.00	0.00	4.79
2547	3399	2.535012	TATCAAACACGCCACAGACA	57.465	45.000	0.00	0.00	0.00	3.41
2550	3402	3.188254	TGTGATTATCAAACACGCCACAG	59.812	43.478	0.00	0.00	37.35	3.66
2590	3442	4.223923	CCCCTATAAGCATCTCCGAAAGAT	59.776	45.833	0.00	0.00	46.04	2.40
2594	3789	2.972348	ACCCCTATAAGCATCTCCGAA	58.028	47.619	0.00	0.00	0.00	4.30
2601	3796	1.002087	GCACGCTACCCCTATAAGCAT	59.998	52.381	0.00	0.00	35.98	3.79
2621	3816	4.621460	CGCTCATCCCTATAAACATACGTG	59.379	45.833	0.00	0.00	0.00	4.49
2622	3817	4.280174	ACGCTCATCCCTATAAACATACGT	59.720	41.667	0.00	0.00	0.00	3.57
2623	3818	4.806330	ACGCTCATCCCTATAAACATACG	58.194	43.478	0.00	0.00	0.00	3.06
2631	3867	1.538512	GCACGTACGCTCATCCCTATA	59.461	52.381	16.72	0.00	0.00	1.31
2635	3871	0.031585	TATGCACGTACGCTCATCCC	59.968	55.000	21.15	2.72	0.00	3.85
2665	3901	9.037737	TGTGAGTTAACATAGTAAAGACACAAC	57.962	33.333	8.61	0.00	32.02	3.32
2666	3902	9.602568	TTGTGAGTTAACATAGTAAAGACACAA	57.397	29.630	8.61	0.00	39.71	3.33
2690	3926	4.085312	CCGCATTTCTTTGTACGGTTTTTG	60.085	41.667	0.00	0.00	35.99	2.44
2735	3971	0.394938	TCCTTAAGTTGGCTCGCACA	59.605	50.000	0.97	0.00	0.00	4.57
2758	3994	5.447818	GGCAAGCGCTATCCATATAACATTC	60.448	44.000	12.05	0.00	38.60	2.67
2764	4000	1.134818	CCGGCAAGCGCTATCCATATA	60.135	52.381	22.62	0.00	38.60	0.86
2772	4008	4.789075	GTCGACCGGCAAGCGCTA	62.789	66.667	12.05	0.00	38.60	4.26
2789	4025	0.179113	CCGATCAAAATTTGGGCCGG	60.179	55.000	15.30	15.30	33.67	6.13
2802	4038	1.067060	CGGCTACTTGATGTCCGATCA	59.933	52.381	0.00	0.00	38.02	2.92
2814	4050	1.076332	GTCAAATCGCACGGCTACTT	58.924	50.000	0.00	0.00	0.00	2.24
2867	4103	1.017177	TCGGGCAATGCGTTGTCTAC	61.017	55.000	21.82	6.35	39.86	2.59
2892	4128	1.507141	GAACTGTGGCAGGGACAACG	61.507	60.000	0.00	0.00	35.51	4.10
2912	4148	3.764237	ACACCGAGTTGTTCCTACAAT	57.236	42.857	0.00	0.00	45.41	2.71
2929	4165	4.166011	GAGCGGCGCCATGAACAC	62.166	66.667	30.40	5.94	0.00	3.32
2979	4215	0.461870	CGATGATTTGAGTCGGGGCA	60.462	55.000	0.00	0.00	0.00	5.36
3011	4247	1.356624	GCACTTCAAGCAGCGTTGT	59.643	52.632	0.00	0.00	0.00	3.32
3014	4250	3.349006	CGGCACTTCAAGCAGCGT	61.349	61.111	0.00	0.00	0.00	5.07
3040	4277	4.101448	GGATGTGCTGCGAGGGGT	62.101	66.667	0.00	0.00	0.00	4.95
3081	4318	2.283604	TGACCCTGCCGCTAGTCA	60.284	61.111	6.60	6.60	36.92	3.41
3189	4426	1.080025	GGAGACGACAAGGGGAACG	60.080	63.158	0.00	0.00	0.00	3.95
3192	4429	2.055299	GTTGGAGACGACAAGGGGA	58.945	57.895	0.00	0.00	44.70	4.81
3241	4478	3.365969	GGGATTTTTGCTACAACCGACAG	60.366	47.826	0.00	0.00	0.00	3.51
3290	4527	2.595750	TTTTGTGGGGATCCGTGATT	57.404	45.000	5.45	0.00	35.24	2.57
3314	4551	2.974935	TACCGGCGCGACAACTGTTT	62.975	55.000	14.85	0.00	0.00	2.83
3315	4552	3.502990	TACCGGCGCGACAACTGTT	62.503	57.895	14.85	0.00	0.00	3.16
3316	4553	3.909258	CTACCGGCGCGACAACTGT	62.909	63.158	14.85	5.62	0.00	3.55
3317	4554	3.179265	CTACCGGCGCGACAACTG	61.179	66.667	14.85	0.00	0.00	3.16

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.