>input_sequence_54096
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CGCGCGCATCAGTCACCGGCCACAAGCCTCCTCCCGCCCCAATGGAGGCCGTCCTGCGACATCCATCCCTTTCCCGCCTC
AAAGCCCCCAACCCAGCTGCTCACAGAACCCAGTACCTCTCCATCACCGTCCCTCGCCGTCCCCGCGTCCCCAAGCGCCG
CCTCGCCG------CCGCCGCGCTGTTCCAGGACCAGACCAACCCAAGAACCGCGGCAACAAGCAAGGGGGGCGATGAAG
AAGACGAGGAGGGGTACGGAGAGGTGGACCGCATCGTCTCCAGCCGAACCGTCAAGAACGCGGTGTTCGCGGAGGACGGC
TCGGCCACCACCGTCACCGCCACGGAATACCTCGTCGAGTGGAAAGACGGGCACGAGCCGACCTGGATCCCGTCGGAGGC
GATAGCCGCGGACGTGGTGGCGGAGTACGAGACGCCGTGGTGGGATGCCGCCAAGAAGGCCGATGTGGATGCGCTGGGCG
CGCTGCTGGCGGACGAGGCGCTGCGGCGGGACCCGAACGCCGAGGACGCGCAGGGGCGCACGGCGATGCACTTCGCCGCG
GGGCTCGGGTCGGAGGAGTGCCTGCGCTTGCTCGCGGAGGCGGGGGCGGACGTGGGCCACGCGGAGCGCGCCGGCGGAGG
GCTGACGCCGCTGCACATCGCGGCGGGGTACGGCCGGGCGACGGGCGTGCGCGCGCTGCTGGAGCTGGGCGCCGACGCGG
AGGGCCCCGACGGGAAGGGCCGGACGCCCCTGGAGCTCGTGCAGGAGGTGCTGGCTGCGACGCCCAAGGGCGTGCCAGCG
GCGTTCGAACGGCGCCAAGCGCTCGAGGCGGCGGCGAAGGAGCTGGAGAAGGCCGTGTACGAGTGGGGCGAGGTGGAGAA
GGTGGTGGACGGGCGCGGCGAGGGCAAGTGGCGGGAGTACCTGGTGGAGTGGCGCGACGGCGGCGACCGGGAGTGGGTGA
AAGCGCCGTGGGTGGCGGAGGACCTGGTGAAGGACTTCGAGGCCGGGCTGGAGTACGGCGTCGCGGAGGCCGTCGTGGAC
AGGAGGCAGGCGGCGGACGGCGACGGGGACGGCAAGTGGGAGTACCTCGTCAAGTGGGTGGACATTGAGGAGGCGACGTG
GGAGCCCGCGGAGAACGTGGACGCCGAGCTCGTGCAGGAGTTCGAGCGGCAGCAGTCGGGGAACGGTGGCGCCGCACCGC
CGGCGGAGACATTTGCCGGGTGACGGCGGCCGTCGATCGTGCTCGGTTCGCTCTTCGTTTTTGTCGTGTCGATGGAACGT
CGCAGTATGTATCATTAGCGATCGAAGAGATTTTTGTGTGATTAT--TAATTAAGAAAACATTCTCAT------------
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----------------
>chr5A_1_TraesCS5A01G498700
CTAGGCTACAGCTTCAAGCTGAAAATACTTAAGATAATTAACAAACTATCTCTACCGTTCATTGCACGATGAACAGCTCA
GATTTTCCTGGAAAATTCAGAACCGCATCGCCTTATCGCAAAGCTCTTTTTAC--CGGTGCCGGGATGTACCGGCAACCA
GCTAGCCAATCAGCATATGACATCACA-TAAGCACTCATATACGGGAGATGTATTTCACTCATTT-CTCTAGATTTGCAT
GCAGTGTATTTTCTGCACTAGGACCGG---TATGTCAGATGAAGGAGACATGCATGCGTGACCATCTCTGCCTGACACAC
AAGTACTTATGAAGCACGCATGCATTTTGTTTTCGCTTTGATAATTTCAATCACGCATATCTTTTAATCTATAGTTTTAT
TTTTAA-----TTTTTTTTATATAAT------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------TGCAATGTGTTTTCTAAAATGAGTGAAATCT
ATCATTTGTAAATGGTTGTAATGTGTTTTCTGAATCTAGTGAAATGTGAAACTGA-CTGGAAGGTTTTCCAAAACTAGTG
AAATGTGAAATTGACTGAAATGCTTTCTCTAAAATGAGTGAAACAGTAAAATTCAAACTAGCCAAAGTGCATCCAAGATT
GATCTTGTTTTAAAGGTCTTGTCGTGCTGAATTCAAAAATATAAAATATTTCAAAACTGGATATTTAGTTCAAAAGTTAT
CAACCTTTTAAAATATGGCATGGAAAATAAAGTGTAAGTATTTAGTACGTGCATGCAGCTCGTTCATCTGCTC--AATCT
CTCACCCTGCCACCTGACAAAAGGTACTGCTGTGGAC-CTC-GCCCAACCTTGTATATGTGTTTGTATAAGATTCGTATT
GCTAAGAAGGAGAAACAAAAGCATAGTGGGGTCTACCAGCCATACCAATCTCAAAGCAATGTTTGTGGTAGATTCATCAC
CGGTACATCCCGCCACCGGTAGAAAAACTTATTCGATCGCCTTATCCTCTCAACCAGACCCATCATCTTCCTCCTCCACA
CGCGCGCATCAGTCACCGGCCACAAGCCTCCTCCCGCCCCAATGGAGGCCGTCCTGCGACATCCATCCCTTTCCCGCCTC
AAAGCCCCCAACCCAGCTGCTCACAGAACCCAGTACCTCTCCATCACCGTCCCTCGCCGTCCCCGCGTCCCCAAGCGCCG
CCTCGCCG------CCGCCGCGCTGTTCCAGGACCAGACCAACCCAAGAACCGCGGCAACAAGCAAGGGGGGCGATGAAG
AAGACGAGGAGGGGTACGGAGAGGTGGACCGCATCGTCTCCAGCCGAACCGTCAAGAACGCGGTGTTCGCGGAGGACGGC
TCGGCCACCACCGTCACCGCCACGGAATACCTCGTCGAGTGGAAAGACGGGCACGAGCCGACCTGGATCCCGTCGGAGGC
GATAGCCGCGGACGTGGTGGCGGAGTACGAGACGCCGTGGTGGGATGCCGCCAAGAAGGCCGATGTGGATGCGCTGGGCG
CGCTGCTGGCGGACGAGGCGCTGCGGCGGGACCCGAACGCCGAGGACGCGCAGGGGCGCACGGCGATGCACTTCGCCGCG
GGGCTCGGGTCGGAGGAGTGCCTGCGCTTGCTCGCGGAGGCGGGGGCGGACGTGGGCCACGCGGAGCGCGCCGGCGGAGG
GCTGACGCCGCTGCACATCGCGGCGGGGTACGGCCGGGCGACGGGCGTGCGCGCGCTGCTGGAGCTGGGCGCCGACGCGG
AGGGCCCCGACGGGAAGGGCCGGACGCCCCTGGAGCTCGTGCAGGAGGTGCTGGCTGCGACGCCCAAGGGCGTGCCAGCG
GCGTTCGAACGGCGCCAAGCGCTCGAGGCGGCGGCGAAGGAGCTGGAGAAGGCCGTGTACGAGTGGGGCGAGGTGGAGAA
GGTGGTGGACGGGCGCGGCGAGGGCAAGTGGCGGGAGTACCTGGTGGAGTGGCGCGACGGCGGCGACCGGGAGTGGGTGA
AAGCGCCGTGGGTGGCGGAGGACCTGGTGAAGGACTTCGAGGCCGGGCTGGAGTACGGCGTCGCGGAGGCCGTCGTGGAC
AGGAGGCAGGCGGCGGACGGCGACGGGGACGGCAAGTGGGAGTACCTCGTCAAGTGGGTGGACATTGAGGAGGCGACGTG
GGAGCCCGCGGAGAACGTGGACGCCGAGCTCGTGCAGGAGTTCGAGCGGCAGCAGTCGGGGAACGGTGGCGCCGCACCGC
CGGCGGAGACATTTGCCGGGTGACGGCGGCCGTCGATCGTGCTCGGTTCGCTCTTCGTTTTTGTCGTGTCGATGGAACGT
CGCAGTATGTATCATTAGCGATCGAAGAGATTTTTGTGTGATTAT--TAATTAAGAAAACATTCTCATGAGATTGAGACA
TTGCAATCTTAAACAATCACGGTGAAGAGAGCCAACC--AATTTGTGATAGGATGGTTAGAAGGGTCGTGGTATTTCTAA
CCCATCAGGATCCAAATTCTAAACTCGATATTAGTGCC-TGTATTTTTTTGAATTTATTTTAAGTCTTTCGATGACATGC
GTTCAATGGGGAGAAGACGTTCCCGTCGATTATGAAGGTGTCTGTGGCGTGTTTGATAATCACAAATGATGTGCCGACTC
GATC----------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------TTTCGGAGATGCTTATAGGGGTAGCGTGCAC----------------------
-------------------GTATGTTTATAGGGATGAGCGTACGTGCATATGTATGAGCGGTTGTGTCTTTACTATGTTA
ACTCACAAAAACCGTACAAAGAAATGCGGCAGCAGCGGCTTGCATTCCATTGTGCGAGCCAACTTAAGGAAGAGAATGTT
ATATGGATAGCGCTTGCCGGTCGACCGGCCCAAATTTTGATCGGACATCAAGTAGCCGTGCGATTTGACCCACGTCATCA
TATTTCTTCCCTCATCTCGATAGTAGACAACGCATTGCCCGACAGCGCGTTGTCCCTGCCACAGTTCATTGTAGGAACAA
CTCGGTGTTCATGGCGCCGCTCGCTTCCTCGCTGCTGCATCGATACTAGCTCGTTGCCCCGACTCAAATCATCGACGAGG
ATGCTCACAACGCTGCTTGAAGTGCC-GGGGAGAAAACCCCTCGCAGCACATCCGAAGTGGTGCATGTATCCACCTCTGA
CTAGCGGCAGGGTCACGCCTCACAACAACCTCATCTGTCACGGTTGCTCGCGACGACAAAGCAGCGCGTCGCCTTTGGCG
CCGGTGGGTGCCAGTTGCAGCACCCCGTTCCCCTTGTCGTCTCCAACATTTGCAGGTGCTGGCCCTGGCGAAAACCGCTG
TCGGTTGTAGCAAAAATCCCAACGCCGGTTGTAGCAAAACACCAACAATCACGGATCCCCACAAAAAAAAAAACAGTTGT
CGCGCCGGTAGCAACA
>chr4B_8
-------ACACCTTCAAGCTAAAAAACCTTAAGATGATTAACAAATTATCTCTACCGTTCATTGCATGATGAACAGCTCA
GATTTTCCTGGAAAATTCAGAACCCCC-----------------------------------------------------
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-----------------------------------ATCGCCTTATCCTCTCAACCAGACCCATCATCTTCCTCCTCCACA
CGCGCGCATCAGTCACCGGCCACAAGCCTCCTCCCGCCCCAATGGAGGCCGTCCTGCGACATCCATCCCTTTCCCGCCTC
AAAGCCCCGAACCCAGCTGCTCACAGAACCCAGTACCTCTCCATCACGGTCCCTCGCCGTCCTCGCGTCCCCAAGCGCCG
CCTCGCCGCCGCCGCCGCCGCGCTGTTCCAGGACCAGACCAACCCAAGAACCGCGGCAGCAAGCAAGCGGGGCGATGAAG
AAGACGAGGAGGGGTACGGAGAGGTGGACCGCATCGTCTCCACTCGAACCGTCAAGAACGCGGTGTTCGCAGAGGACGGC
TCGGCCACCACCGTCACCGCCACGGAGTACCTCGTCGAGTGGAAAGACGGGCACGAGCCGACCTGGATCCCGGCGGAGGC
GATAGCCGCGGACGTGGTGGCGGAGTACGAGACGCCGTGGTGGGATGCCGCCAAGAAGGCCGATGCGGATGCGCTGGGCG
CGCTGCTGGCGGACGAGGCGCTGCGGCGGGACCCGGACGCCGAGGACGCGCAGGGGCGCACGGCGATGCACTTCGCGGCG
GGGCTCGGGTCGGAGGAGTGCCTGCGCTTGCTCGCGGAGGCGGGGGCGGACGTGGGCCACGCGGAGCGCGCCGGCGGAGG
GCTGACGCCGCTGCACATCGCGGCGGGGTACGGCCGCGCGACGGGCGTGCGCGCGCTGCTGGAGCTGGGCGCCGACGCGG
AGGGCCCCGACGGGAAGGGCCGGACGCCGCTGGAGCTGGTGCAGGAGGTGCTGGCCGCGACGCCCAAGGGCGTCCCAGCG
GCGTTCGAGCGGCGACAGGCGCTCGAGGCGGCCGCGAAGGAGCTGGAGAAGGCGGTGTACGAGTGGGGCGAGGTGGAGAA
GGTGGTGGACGGGCGCGGCGAGGGCAAGTGGCGGGAGTACCTGGTGGAGTGGCGCGACGGCGGCGACCGGGAGTGGGTGA
AAGCGCCGTGGGTGGCGGAGGACCTGGTGAAGGACTTCGAGGCCGGGCTGGAGTACGGCGTCGCGGAGGCCGTCCTGGAC
AGGAGGCAAGCGGCGGACGGCGACGGGGACGGCAAGTGGGAGTACCTCGTCAAGTGGGTGGACACCGAGGAGGCGACGTG
GGAGCCCGCGGAGAACGTGGACGCGGAGCTCGTGCAGGAGTTCGAGCGGCAGCAGCCGGGGAACGGTGGTGCCGCATCGC
CGGCGGAGACATTTGCCGGGTGATGACGGCCGTCGATCGTGCTCGGTTCGCTCTGCGGTTTTGTCGTGTCGATGGAACGT
CGCAGTATGTATCATTAGCGATCGAAGAGATTTTTGTGTGATTATATTAATTAAGAAAACATTGCCATGAGATTTAGACA
TTGTAATCTTGAACAATCACGGTGAAGAGAGCAAACCAAAATTTGTGATTGGATGGTTAGAAGGACCGTGATATCTTTAA
TCTATCGGAATTCAAGTTCTAAACTTTGACATTGGTGTTTGCATTTTTCTGAATTTATTTTAAGTCTTTCGATGATGTGG
ATTCAATGGGAAGAAGACGCTTTTGTCGATTATGAAGGCGTTTGTGGTGAGTTCGACAATCACAAATGATGTGCCGACTC
GGTC----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------TCTCGGAGGTGCTTATAGGGGTAGCATG-------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------
>chr6A_117
--------------------------------------------------------------------------------
------------------------------------CGCAAAGCTCTTTTTAC--CGGTGCCCGGATGTACCGGCAACCA
GCTAGCCAATCAGCACATGACATCACATTAAGCACTCATATACGGGAGATGTATTTCACTCATTTTCTCTAGATTTGCAT
GCAATGTATTTTTCGCACTAGGACCCACCATATGTCAGATGAAGGAGACATGCATGCGTGACCATCTCTGGCTGACACAC
AAGTACTTATGAAGCACGCATGCATTTTGTTTTCGCTTTGATAATTTCAATCACGCATATCTTTTAATCTATTGTTTTAT
TTTTAA-----TTTTTTTATTATATTTGAACTCCCAGGGTCAAGACCTTTACAACAAGATCATTCTTGGATATATTTGAA
ACATGTTTAAATTTCAACGTTTCAACTCACTTATTTCGTTGAATCTATTAATTCCGTGTGGGAAATTTGTTTTTCATTTT
AGTGAATTTATTTTGAAATGAGCTAAACTTGTATTGAG----------------------------TGAAATTAGTTTTG
TAATGGAGGAAATATAGTATTTCAATATAATTTTTGAGTGAAATATTTCCAAACGTGTGAAATATGTTTATTGAAATGAT
TGAAATTAATTTTTATATGAGTGAAATATCAGTTTCGCAAGCGCACAGTGAAATTAGTTTTGAAATATATCTTTTGTAAT
GAGTGAAAAAGGTATTTTGAAATGAGTGAAATATAGTATTTCAATTGAATGAGTGTAATGTGTTTTCTGGAATGAGTGAA
ATTAATGTGTTTTTCAGTGAAATAATTTTACTGAAATCGAAAAATTAAATTTGTGAGGATGAGTAAACAAATATTCAAAA
GAAACCTATTTCAAAAGAAATAGCAAGAACAAACCTATTTCGTAAGAAATATGTGAAATAACCCATTTTTATAAGAAATG
TGATGAAATATATTTAGTGAAATGATTCAAATCAATTTTTATAAGAGTGAAATATCAGTTTCGCAAGCGCACAGTGAAAT
TAGTTTTGAAATATATCTTTTGTAATGGGTGGACAAGGTTTTTTT-AAACAAGTGAAACATAGTTTTTTC--AATTTAGT
GAGTGTAATGTGTTTTGTGAATGAATGAAATCTATCTTTCATAAATGAGTGTAATGTGTTTTCTAAAATGAATGAAATCT
ATCATTTGTAAATGATTGTAATGTGTTTTCTGAATCTAGTGAAATGTGAAACTGA-CTGGAAGGTTTTTCGAAACTAGTG
AAATGTGAAATTGACTGAAATGCTTTCTCTAAAATGAGTGAAACAGTAAAATTCAAACTAGCCAAAGTGCATCCAAGATT
GATCTTGTTTTAAAGGTCTTGTCGCGCTGAATTCAAAAATATATAATATTTCAAAACTGGATATTTAGTTCAAAAGTTAT
CAACCTTTTAAAATATGGCATGGAAAATAAAGTGCAAGTATTTAGTACGTGCATGCAGCTCGTTCATCTGCTC--AATCT
CTCACCCTGCCACCTCACAAAAGGTACTGCTGTGGAC-CTC-GCCCAACCTTGTATATGTGTTTGTATAAGATTCGTATT
GCTAAAAAGGAGAAACAAAAGCATAGTGGGGTCTACCAGCCACAGCAATCTCAAAGCAACGTTTGTGGTAGATTCTTCAC
CAGTACATCCCGCCACCGGTAGAAAAACTTAATTCG--------------------------------------------
--------------------------------------------------------------------------------
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>chr7B_117
--------------------------------------------------------------------------------
------------------------------------CGCAAAGCTCTTTTTTTATCGGTGCCGGGAT-TACCGGCAACCA
GCTTGCCAATCAGCACATGACACCACATCAAGCACTCATATACGGAAGATGTATTTCACTCATTTT-TCTAGATTTGCAT
GCAGTGTATTTTCTACACTAGGACCCACCATATGTCAGATGAAGGACACATGCATGTGTGACCATCTCTTGCTGACACAC
AAGTACCTATGAAGCACGCATGCATTTTGTTTTCGCTTTGACAATTTCAATCACCCATATCTTTTAATCTATAGTTTTAT
TTTTAA-----TTTTTTTAT---ATTTGAACTCCCAGGGTCAAGGCCTTTACAACAAGATCATTCTTGGATATATTTGAA
ACATGTTTAAATTTGAATGTTTCAATTCACTTATTTCGTTCAATCTATTAATTCCGTGTGGGATT----TTTTTCATTTT
AGTGAATTTATTTTGAAATGAGCTAAACTTGTATTGAGTGAAATTATAAATGAGCTAAAATAATTTTGAAATTAGTTTTG
TAATGGATGAAATATAGTATTTCAATAGAATTTTTGAGTGAAATGTTTTAAGACGTGTGAAATATGTTTATTGAAATGAT
TGAAATCAATTTTTATATGAGTGAAATATCAGTTTCGCAAGAGCACAATGAAATTAGTTTTGAAATATATCTTTTGTAAT
GAGTGAAAAAGGTATTTTGAACG--------------ATTTCAATTGAATGAGTGTAATGTGTTTTCTGGAATGAGTGAA
ATTAATGTGTTTTTTAGTGAAATAATTTTACTGAAACTGAAAAATTAAATTTGTGAGGATGAGTAAACAAATATTCAAAA
GAAACCTATTTCAAAAGAATTAGCAAGAACAAACCTATTCCGTAAGAAATATGTGAAATAAACCTATTTTATAAGAAATG
TGGTGAAATATATTTAGTGAAATAATTGAAATCAATTTTTATATGAGTGAAATATCAGTTTGGCAAGCGCGCAGTGAAAT
TAATTTTGAAATATACCTTTTGTAATGGGTGGACAAGATTTTCTTAAAACAAGTGAAACATAGTTTTTTC--AATTTAGT
GAGTGTAATGTGTGTTCTGAATGAATGAAATCTATCTTTCGTAAATGAGTGTAATGTGTTTTCTAAAATGAGTGAAATCT
GTCATTTGTAAATGATTGTAATGTGTTTTCTGAATCTAGTGAAATGTGAAACTGA-CTGGAAGGTTTGCCGAAACTAGTG
AAATGTGAAACTGACTGAAATGCTTTCTCTAAAATGAGTGAAACGGTAAAATTCAAACTAGCCAAAGTGCATCCAAGATT
GATCTTGTTTTAAAGGTCTTGTCACGCTGAATTCAAAAATATAAAATATTTCAAAACTGGATATTTAGTTCAAAAGTTAT
CAACCTTTTAAAATGTGGCATGGAAAT-----TGCAAGTATTTAGTACGTGCATGCAGCTCGTTCATCTGCCCTCTCTCT
CTCACCCTGCCACCTGACAAAAGGTACTGCTATGGACCC-C-GTCCAACCTTGTATATGTGTTTGTATAAGATTCGTATT
GCTAAAAAGGAGAAATAAAAGCATAGTGGGGTCTACCAGCCACACCAATCTCAAAGCAACTTTTGTGGGAGATTCTCCAC
CAGTACCTCCCGCCACCGGTAGAAAAACTTATTCG---------------------------------------------
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----------------
>chr7D_136
GTGACC--------------------------------------------------------------------------
--------------------------------------------------------------GGGATGTACCGGCAACCA
GCTAGCCAATCAGCACATGACACCACATCAAGCACTCATATACGGGAGATGTATTTCACACATTTC-TCTAGATTTGCAT
GCAGTATATTTTCTGCACTAGGACCCACCAAATGTCAGATGAAGGACACATGCATGCATGACCATCTATTGCTGCCACAC
AAGTACTTACGAAGCACGCATGCATTTTGTTTTCGCTTTGACAATTTCAATCACGCATATCTTTTAATCTATAGTTTTAT
TTTTAAAACTTTTTTTTTAT---ATTTGAACTCCCAGGGTCAAGTCCTTTATAACAAGATCATTATTGGATATATTTGAA
ACATGTTTAAATTTCAACGTTTCAATTCACTTATTTCGTTCAATCTATTAATTCCGTGAGGGAAATTTGTTTTTCATTTT
AGTGAATTTATTTTGAAGTGAGCTAAACTTGTATTGAATGAAATTACAAATGAGCTAAAATAATTTTGAAATTAGTTTTG
TAATGGATGAAATATAGTATTTCAATAGAATTTTTGAGTGAAATATTTTTAAACGTGTGAAATATGTTTATTGAAATGAT
TGAAATCAATTTTTATATGAGTGAAATATCAGTTTCTCAAGCGCACGGTGAAATTAGTTTTGAAATATATCCTTTGTAAT
GAGTGAAAAAGGTATTTTGAAACGAATGAAATATAGTATTTCAATTGAACGAGTGTAATGTGTTTCCTGAAATGAGTGAA
ATTAATATGTTTTTTAGTGAAATAATTTTACTCAAACTGAAAAATTAAATTTGTGAGGATGAGTAAACAAATATTCAAAA
GAAACCTATTTCAAAAGAAATAGCAAGAACAAACCTATTTCGTAAGAACTATGTGAAATAAACCTATTTTATAAGAAATG
TGGTGAAATATATTTAGTGAAATGATTGAAATCAATTTTTATATGAATGAAATATCAGTTTCGCAAGCGCGCAGTGAAAT
TAGTTTTGAAATATATCTTTTGTAATGGGTGGACAAGGTTTTTTT-AAACAAGTGAAACATAGTTTTGTTTTAATTTAGT
GAGTGTAATGTGTTTTCTGAATGAATGAAATCTATCTTTCGTAAATGAGTGTAATGTGTTTTCTTAAATGAGTGAAATCT
ATGTTTCGTAAATGATTGTAATGTGTTTTTTGAATCTAGTGAAATGTGAAACTGA-CTGGAAGGTTTTCCGAAACTAGTG
AAATGTGAAACTGACTGAAATGATTTCTCTAAAATGAGTGAAACGGTAAAATTCAAACTAGCCAAAGTGCATCTAAGATT
GATCTTGTTTTAAAGGTCTCGTCGCGTTGAATTCAAAAATATAAAATATTTTAAAACTGGATATTTAGTTCAAAAGTTAT
CAACCTTTTAAAATGTGGCATGAAAAATAAAGTGCAGGTATTTAGTACGTGCATGCAGCTTGTTCATCTG--CTCTCTCT
CTCACGCTGCCACCTGACAAAAGGTACTGCTGTGG-GCC-CTGCCCAACCTTGTATATGTGTTTGTATAAGATTCGTATT
GCTAAAAAGGAGAAACAAAAGCATAGTGGGGTCTACTAGCCACACCAATCTCAAAGCAATGTTTGTGATAGATTCTCCAC
CGGTACCTCCCGCCACCGGTAGAAAAACTTCTTCGCTCACC---------------------------------------
--------------------------------------------------------------------------------
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----------------
>chr4D_415
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------TGTAATGTGTTTTCTTAAATGAGTGAAATCT
ATCTTTCGTAAATGATTGTAATGTGTTTTCTGAATCTAGTGAAATGTGAAACTGA-CTGGAAGGTTTTCCAAAACTAGTG
AAATGTGAAACTGACTGAAATGCTTTCTCTAAAATGAGTGAAACGGTAAAATTCAGACTAGCCAAAGTGCATCTAAGATT
GATCTTGTTTTAAAGGTCTCGTCGTGCTGAATTCAAAAATGTAAAATATTTCAAAACTGGATATTTAGTTCAAAAGTTAT
CAACCTTTTAAAATGTGGCATGAAAAATAAAGTGCAGGTATTTAGTACGTGCATGCAGCTTGTTCATCTGCTCTCTCTCT
CTCACGCTGCCACCTGACAAAAGATACTGCTGTGG-ACC-CTGCCTAACCTTGTATATGTGTTTGTATAAGATTCATATT
GCTAAAAAGGAGAAACAAAAGCATAATAGGGTCTACCAGCCACACCAATCTCAAAGCAACGTTTGTGGTAGATTCTCCAC
CGGTACCTCCCGCCACCGGTAGAAAAACTTATTCG---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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----------------
>chr4A_415
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-------------------------------------------------TGTAATGTGTTTTCTAAAATGAGTGAAATCT
ATCATTTGTAAATGATTGTAATGTGTTTTCTGAATCTAATGAAATGTGAAACCGA-CTGGAAGGTTTTCCGAAACTAGTG
AAATGTGAAATTGACTGAAATGCTTTCTCTAAAATGAGTGAAACTGTAAAATTCAAACTAGCCAAAGTGCATCCAAGATT
GATCATGTTTTAAAGGTCTTGTCGCGCTGAATTCAAAAATATATAATATTTCAAAACTGGATATTTAGTTCAAAAGTTAT
CAACCTTTTAAAATATGGCATGGAAAATAAAGTGCAAGTATTTAATACGTGCATGCAGCTCGTTCATCTGCTC--AATCT
CTCACCCTGCCACCTGACAAAAGGTACTGCTGTAG-ACCTC-GCCCAACCTTGTATATGTGTTTGTATAAGATTCGTATT
GCTAAAAAGGAGAAACAAAAGCATAGTGGGGTCTACCAGCCACAGCAATCTCAAAGCAACGTTTGTGGTAGATTCTTCAC
CGGTACATCCCGCCACCGGTAGAAAAACTTATTCG---------------------------------------------
--------------------------------------------------------------------------------
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----------------
>chr2D_415
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------TGTAATGTGTTTTCTAAAATGAGTGAAATC-
--------TAAATGATTGTAATGTGTTTTCTGAATCTAGTGAAATGTGAAACTGA-CTGGAAAGTTTTCCGAAACTAGTG
AAATGTGAAACTGACTGAAATGCTTTCTCTAAAATGAGTGAAACGGTAAAATTCAAACTAGCCAAAGTGCATCCAAGATT
GAACTTGTTTTAAAGGTCTTGTCGCGCTGAATTCAAAAAAATATAATATTTCAAAACTGGATATTTAGTTCAAAAGTTAT
CAACCTTTTAAAATGTGGCATGCAAAATAAAGTGCAAGTATTTAGTACGTGCATGCAACTCGTTCATCTGCTC--TCTCT
CTCACCCTGCCACCTGACAAAAGGTACTGCTGTGG-ACC-C-GTCCAACCTTGTATATGTGTTTGTATAAGATTCGTATT
GCTAAAAAGAAGAAATAAAAGCATAATGAGGTCTACCAGCCACATCAATCTCAAAGCAACGTTTGTGGTAGATTCTCCAC
CGGTACCTCCCGCCACCGGTAGAAAAACTTATTCG---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------
>chr5A_418
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------------AATGTGTTTTCTAAAATGAGTGAAATCT
ATTATTTGTAAATGATTGTAATGTGTTTTCTGAATCTAGTGAAATGTGAAACTGA-TTGGAAGGTTTTTCGAAACTAGTG
AAATGTGAAATTGACTGAAATGCTTTCTCTAAAATGAGTGAAACAGTAAAATTCAAACTAGCCAAAGTGCATCCAAGATT
GATCTTGTTTTAAAGGTCTTGTCGCGCTGAATTCAAAAATATATAATATTTCAAAACTGGATATTTAGTTCAAAAGTTAT
CAACCTTTTAAAATATGGCATGGAAAATAAAGTGCAAGTATTTAATACGTGCATGCAGCTCGTTCATCTGCTC--AATCT
CTCACCCTGCCACCTGACAAAAGGTACTGCTGTGG-ACCTC-GCCCAACCTTGTATATGTGTTTGTATAAGATTCGTATT
GCTAAAAAGGAGAAACAAAAGCATAGTGGGGTCTACCAGCCACAGCAATCTCAAAGCAACGTTTGTGGTAGATTCTTCAC
CGGTACATCCCGCCACCGGTAGAAAAACTTATTCG---------------------------------------------
--------------------------------------------------------------------------------
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----------------
>chr5D_429
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------------------TAAAATGAGTGAAATCT
ATCATTTGTAAATGATTGTAATGTGTTTTCTGAATCTAGTGAAATGTGAAACATAGCTGGAAGGTTTTCCGAAACTAGTG
AAATGTGAAACTGACTGAAATGCTTTCTCTAAAATGAGTGAAACAGTAAAATTCAAAATAGCCAAAGTGCATCCAAGATT
GATCTTGTATTAAAGGTCTTGTCGCGCTAAATTTAAAAATATATAATATTTCAAAACTGGATATTTAGTTTAAAAGTTAT
CAACCTTTTAAAATGTGGCATGGAAAATAAAGTGCAAGTATTTAGTGCGTGCATGCAGCTCGTTCATCTGCTC--ACTCT
CTCAACCTGCCACCTGACAAAAGGTACTGCTGTGG-ACCCC-GTCCAACCTTGTATATGTGTTTGTATAAGATTCGTATT
GTTAAAAAGGAGAAACAAATGCATAGTGGGGTCTACCAGCCACACCAATCTCAAAGCAACGTTTGTGATAGATTCTCCAC
CGGTACATCCCGCCACCGGTAGAAAAACTTATTCGAT-------------------------------------------
--------------------------------------------------------------------------------
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>chr1D_430
--------------------------------------------------------------------------------
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----------------------------------------------------------------AAAATGAGTGAAATCT
ATCATTTGTAAATGATTGTAATGTGTTTTCTGAATCTAGTGAAATGTGAAATTGA-CTCAAAGGTTTTCCGAAACTAGTG
AAATGTGAAACTGACTGAAATGCTTTCTCTAAAATGAGTGAAACAGTAAAATTCAAACTAGCTAAAGTGTATCCAAGATT
GATCTTGTTTTAAAGGTCTCGTCGCGCTGAATTCAAAAATATAAAATATTTCAAAACTGGATATTTAGTTCAAAAGTTAT
CAACCATTTAAAATGTGGCATGGAAAATAAAGTGCAAGTATTTAATACGTGCATGCAGCTCATTCATCCGCTC--TCTCT
CTCACCCTGCCACATGATAAAAGGTACTGCTGTGGAACC-C-GTCCAACCTTGTATATGTGTTTGTATAAGATTCGTATT
GCTAAAAA-GAGAAACAAAAGCATAGTGGGGTCTACCAGCCACACCAATCTCAAAGCAACGTTTGTCGTAGATTCTCCA-
CGGTACCTCCCGCCACCGGTAGAAAAACTTATTCG---------------------------------------------
--------------------------------------------------------------------------------
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>chr4D_956
--------------------------------------------------------------------------------
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-----------------------------------ATCGCCTTATCCTCTCAACCAGACCCATCATCTTCCTCCTCCACA
CCCGCGCATCAGTCACCGGCCACAAGCCTCCTCCCGCCCCAATGGAGGCCGTCCTGCGACATCCATCCCTTTCCCGCCTC
AAAGCCCCGAACCCAGCTGCTCACAGAACCCAGCACCTCTCCATCACCGTCCCTCGCCGTCCTCGCGTCCCCAAGCGCCG
CCT---CGCCGCCGCCGCCGCGCTGTTCCAGGACCAGACCAACCCAAGAACCGCGGCAGCAAGCAAGGGGGGCGATGAAG
AAGACGAGGAGGGGTACGGAGAGGTGGACCGCATCGTCTCCAGCCGAACCGTCAAGAACGCGGTGTTCGCGGAGGACGGC
TCGGCCACCACCGTCACCGCCACCGAGTACCTCGTCGAGTGGAAGGACGGGCACGAGCCGACCTGGATCCCGGCGGAGGC
GATAGCCGCGGACGTAGTGGCGGAGTACGAGACGCCGTGGTGGGATGCCGCCAAGAAGGCCGACGCGGATGCGCTGGGCG
CGCTGCTGGCGGACGAGGCGCTGCGGCGGGACCCGGACGCCGAGGACGCGCAGGGGCGCACCGCGATGCACTTCGCGGCG
GGGCTCGGGTCCGAGGAGTGCCTGCGCTTGCTCGCGGAGGCGGGGGCGGACGTGGGCCACGCGGAGCGCGCGGGCGGCGG
GCTGACGCCGCTGCACATCGCGGCGGGGTACGGCCGGGCGACGGGCGTGCGCGCGCTGCTGGAGCTGGGCGCCGACGCGG
AGGGCCCCGACGGGAAGGGCCGGACGCCGCTGGAGCTGGTGCAGGAGGTGCTGGCTGCGACGCCCAAGGGCGTCCCGGCG
GCGTTCGAGCGGCGCCAGGCGCTCGAGGCGGCGGCGAAGGAGCTGGAGAAGGCCGTGTACGAGTGGGGCGAGGTGGAGAA
GGTGGTGGACGGGCGCGGCGAGGGCAAGTGGCGGGAGTACCTGGTGGAGTGGCGCGACGGCGGCGACCGGGAGTGGGTGA
AAGCGCCGTGGGTGGCGGAGGACCTGGTGAAGGACTTCGAGGCCGGGCTGGAGTACGGCGTCGCGGAGGCCGTCGTGGAC
AGGAGGCAGGCGGCGGACGGCGACGGGGACGGCAGGTGGGAGTACCTCGTCAAGTGGGTGGACACCGAGGAGGCGACGTG
GGAGCCCGCGGAGAACGTGGATGCCGAGCTCGTGCAGGAGTTCGAGCGGCAACAGCCGGGGAACGGTGGCGCTGCACCGC
CGGCGGAGACATTTGCCGGGTGACGGCGGCCGTCGATCGTACTCGGTTCGCTCTTCGGTTTTGTCGTGTCGATGGGACGT
CGCAGTATGTATCCTTAGCGATCGAAGAGATTTTTGTGTGATTATATTAATTAAGAAAACATCCCCATGAGATTTAGACA
TTGCAATCTTCAACAATGA---TGAAGAGAGCACTGGT---------------------------CCGTGATTTCCCTAA
CTCATCAGCATTCAAATCCTAGACTTACATTGATACTCA--TATTTTTTTGAATTTGTTTTAGGTCTTTTAGCGATGTGC
GTTC-----GGAGAAGTCGTTCTCGTCTACTGTAAGGACGTATGTGCCGACTTCATCAATCTCAAATGAAGTGTCGGCTC
AGTCTATCGGGGATGTTTATAAGAGTAGAATGTGCATGTGTGTTCATAGGGATGAGCGTACGTGTATACGTGTGAGCATC
TGGGTCTTTACTATGTTAGCTCACAAAAATCATAGTACAAAGAAATGTGGCAGCAGCGGCTTGCATGCGATGGTGCGCGC
CAACTTGAGGAAGACAATGTCATATCGCCGACGCTCGACGGTCGACGTGCCCAAATTTCGATCGGTCATCAAGCAGCCGT
GCGATTTGGCCCACATCATCGTCTTTCTTTCCTGTCCCGATACCAGACAGCGCAGAGCCCGAGAGCGCCTCGTCCCTGCC
ACAGTTCATATGGATGTGCCGACTCAGTCTCGGAGGTGCTTATAGGGGTATCGCGTGTGTATACTCAGTCTTGGAGGTGC
TTATAGGGGTACCGTGTGTGTATGTTCATATGGATGAGCGTACGTGCATATGTATGAGCGTCTACGTCTTTACTATGTTA
ACTCATAAAAACTATACAAAGAAATGCGGCAACAGCGGCTTGCATTCCATCATGCGAGCCAACTTAAGGAAGATAATGTC
ATATGGACAGCGCTCGCCGGTCGAACGGCCCAAATTTCGATCGGTCATTGAGCAGTCGTGCGATTTGGCCCACGTCATCA
TCTTTCTTCCCTCGCCTCGATACTAGACAACTGCCC------GAGAGTGTTGTCCCTGCCACACTTTGTTGCAGGAACAA
CCCGACGTTCATGGCACCGCTCGCTTCCCCGCTGCTGCATCGGTACTAGCTCGTCGCCTCGACTCAAATCGTCGACGAGG
ATGCTCGCAGCGCTGCTTGAAGTGCAAGGGGAGAAAGCCCCTCACAACACATCCGAAGCGGTGCCTGCATCCACCTCCGA
CTAGCGGCGGGGTCACGCCTCACAACAACCTCATCTGTCACGGTTGCTCGCGACGACAAAGCAGTGCATCGTCTTCGGCG
CCGGTGGGTGCCGGTTGCAACACCCTGTGCCCCCTGTCGTCTCCAACATCTGCAGGTGTCGGCCCTAGCAAAAAAGGTTG
CCGGTTGTAGCAAAAATCCCAACGCCGGTCGTAGCAAAACACCAACCATCACGGATCCCCACAAAAAAAT----AGTCGT
CGCGCCGGTAGCAACA
>chr4B_2692
--------------------------------------------------------------------------------
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------AAAAACCGTACAAGGAAATGCGGCAGCAGCGGCTTGCATTCCATCGTGTGAGCCAACTTAAGGAAGGCAATGTA
ATATGGACAGCGCTTGTCGGTCGATCAACCCAAATTTCGATCGGACATCGAGTAGCCGTGCGATTTGACCCACGTCATCA
TATTTCTTCCCTCATCTCGATATTAGACAACGCAGTGCCCGAGAGCGTGTTGTCCCTGCCACAGTTCGTTGTAGGAACAA
CTCGACATTCATGTCGCCGCTCGCTTCCTCGTTGTTGCATCCATACTAGCTCACCGCCCCAACTCAAATCATCGACGAGG
ATGCTTGCATCGCTGCTTAAAGTGCCAGGGGAGAAAGCCCCTCGCAGCACATCCAAAGCGGTGCATGTATCCACCTTCGA
CTAGCGGCAGGGTCACGCCTCACAACAACCTCATCTGTCATTGTTGCTCGCGACAACAAAGCAGCGCATCGTCTTTGGCG
CCGGTGGGTGCCAGTTGCAGCACCCTGTGCCCCTTGTCATCTCCAACATCTATAGGTGCCCG-CCTAGCAAAAACCGTTG
TCAGTTGTAGCAAAAATCCCAATGCCGGTTGTAGCAAAACACCAACCATCACGGATCCCCACAAT-AAAA----AGTTGT
CGCGCCGGTAGCAA--
>SNPs
S-SSS-S---S---------S----SS--------S---------S--------------------S-------------
------------------------S-SSSSSSSSSS--------------------------------------------
---------------S----------------------------------------------------------------
-------------------------SS-------------------------------------------S---------
--------------------------------------------------------------------------------
------------------SS----S-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------S----------------------------
--------------S-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------S---------------------------------------------
--------------------------------------------------------------------------------
-----S------------------------------------S--------------------------------S----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------S-----------------------------------------------------S-----------------
----------------------------------------------------------S---------------------
--------------------------------------------------------------------------------
--------------------------S---------------------------------------------S-------
-----------------------------------------------------------------S--------------
-----------------------------------S----------------------------------------S---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------S--------S-----------------------------------S------
--------S--------S--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------SS--------------
-------------------------------------------------------S------------------------
---------------------------------------------------------S----------------------
----------------------------------------------------------------S---------S-----
----------S---------------------S----------------S--------------SS----S---S-----
--------S--S-------------SSSSS----SSS--------------------------------------SS---
----------------------S---------------S--S-------S---S--S-----------------------
-S------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------S------S-------------------SSS----------------------
--------------------------S---S-----------------------------SS-SS---------------
-----S--------------------------------------------S----------------------S-----S
-------S----------------S------------S-----------S------------------------------
----------------------S-----------S-------S----S-------------------S------------
----SS------------------------------------------------S-------------------------
------S--S--------------------------S---------------------S------------------S--
-------------------------------------------------------------------S---S--------
-------------------------S--S--------------------S---------S------S--S-------S--
----------------------------------------------S-----------------------SSSS------
----------------
>forward_115
--------------------------------------------------------------------------------
---------------TTCAGAACCGCATCGCCTTA---------------------------------------------
--------------------------------------------------------------------------------
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----------------
>reverse_1929
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------CAACCCAGCTGCTCACAGAA----------------------------------------------------
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----------------
>forward_1723
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------TAGTGGGGTCTACCAGCCAT-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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----------------
>reverse_3871
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------GGGATGAGCGTACGTGCATA------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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----------------
