Multiple sequence alignment - TraesCS5A01G495500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G495500 chr5A 100.000 1935 0 0 919 2853 663379037 663380971 0.000000e+00 3574
1 TraesCS5A01G495500 chr5A 100.000 675 0 0 1 675 663378119 663378793 0.000000e+00 1247
2 TraesCS5A01G495500 chr5A 96.154 104 4 0 2481 2584 419514211 419514108 1.360000e-38 171
3 TraesCS5A01G495500 chr5A 95.327 107 5 0 2478 2584 575295098 575294992 1.360000e-38 171
4 TraesCS5A01G495500 chr5A 79.787 188 34 4 1264 1449 436089407 436089592 1.780000e-27 134
5 TraesCS5A01G495500 chr4B 88.374 1187 71 33 968 2116 613754722 613753565 0.000000e+00 1365
6 TraesCS5A01G495500 chr4B 91.941 273 13 5 2586 2849 613752200 613751928 9.650000e-100 374
7 TraesCS5A01G495500 chr4B 92.653 245 16 2 431 673 613755021 613754777 4.520000e-93 351
8 TraesCS5A01G495500 chr4B 89.130 230 12 8 919 1139 613757812 613757587 1.010000e-69 274
9 TraesCS5A01G495500 chr4D 86.939 1225 103 28 919 2116 483369094 483370288 0.000000e+00 1323
10 TraesCS5A01G495500 chr4D 90.179 560 43 7 981 1536 483430556 483431107 0.000000e+00 719
11 TraesCS5A01G495500 chr4D 89.631 434 22 10 1702 2116 483431216 483431645 5.410000e-147 531
12 TraesCS5A01G495500 chr4D 91.234 308 25 2 370 675 483368745 483369052 4.400000e-113 418
13 TraesCS5A01G495500 chr4D 94.815 270 9 2 2586 2850 483432762 483433031 1.580000e-112 416
14 TraesCS5A01G495500 chr4D 80.115 523 81 18 1245 1757 381404274 381403765 4.490000e-98 368
15 TraesCS5A01G495500 chr4D 88.535 157 14 3 463 618 483390519 483390672 1.350000e-43 187
16 TraesCS5A01G495500 chr4D 87.333 150 16 3 463 611 483430330 483430477 4.890000e-38 169
17 TraesCS5A01G495500 chr4D 91.525 118 10 0 1019 1136 381404439 381404322 2.270000e-36 163
18 TraesCS5A01G495500 chr7B 78.522 866 116 43 1043 1853 77431942 77432792 3.280000e-139 505
19 TraesCS5A01G495500 chr7B 87.667 300 34 3 2117 2414 444715341 444715639 2.100000e-91 346
20 TraesCS5A01G495500 chr7A 79.300 657 71 35 1250 1853 121398162 121398806 1.590000e-107 399
21 TraesCS5A01G495500 chr7A 88.079 302 33 3 2117 2416 619577222 619577522 3.500000e-94 355
22 TraesCS5A01G495500 chr7A 86.687 323 35 6 2117 2438 717077014 717076699 4.520000e-93 351
23 TraesCS5A01G495500 chr7D 79.553 626 69 32 1271 1853 117245068 117245677 2.660000e-105 392
24 TraesCS5A01G495500 chr1B 88.294 299 33 2 2117 2414 50558326 50558623 9.720000e-95 357
25 TraesCS5A01G495500 chr1B 87.043 301 39 0 2117 2417 418414776 418414476 9.790000e-90 340
26 TraesCS5A01G495500 chr2A 86.984 315 37 4 2104 2415 447139964 447140277 4.520000e-93 351
27 TraesCS5A01G495500 chr2A 96.154 104 4 0 2481 2584 96070191 96070294 1.360000e-38 171
28 TraesCS5A01G495500 chr2A 93.578 109 7 0 2476 2584 706551271 706551379 2.270000e-36 163
29 TraesCS5A01G495500 chr2B 87.625 299 36 1 2117 2414 784782433 784782135 2.100000e-91 346
30 TraesCS5A01G495500 chr3D 87.584 298 36 1 2117 2413 469481524 469481227 7.570000e-91 344
31 TraesCS5A01G495500 chr3D 91.200 125 11 0 1263 1387 570801665 570801789 1.360000e-38 171
32 TraesCS5A01G495500 chr2D 86.392 316 36 5 2104 2415 336960655 336960967 3.520000e-89 339
33 TraesCS5A01G495500 chr3B 90.580 138 13 0 1250 1387 757918709 757918846 1.750000e-42 183
34 TraesCS5A01G495500 chr3A 94.595 111 6 0 2473 2583 614349293 614349403 3.780000e-39 172
35 TraesCS5A01G495500 chr3A 89.130 138 15 0 1250 1387 703905902 703905765 3.780000e-39 172
36 TraesCS5A01G495500 chr3A 96.154 104 4 0 2481 2584 60525905 60525802 1.360000e-38 171
37 TraesCS5A01G495500 chr1A 96.154 104 4 0 2481 2584 23411733 23411630 1.360000e-38 171
38 TraesCS5A01G495500 chr1A 96.154 104 4 0 2481 2584 398664394 398664291 1.360000e-38 171
39 TraesCS5A01G495500 chr1A 95.192 104 5 0 2481 2584 582704859 582704756 6.320000e-37 165


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G495500 chr5A 663378119 663380971 2852 False 2410.50 3574 100.0000 1 2853 2 chr5A.!!$F2 2852
1 TraesCS5A01G495500 chr4B 613751928 613757812 5884 True 591.00 1365 90.5245 431 2849 4 chr4B.!!$R1 2418
2 TraesCS5A01G495500 chr4D 483368745 483370288 1543 False 870.50 1323 89.0865 370 2116 2 chr4D.!!$F2 1746
3 TraesCS5A01G495500 chr4D 483430330 483433031 2701 False 458.75 719 90.4895 463 2850 4 chr4D.!!$F3 2387
4 TraesCS5A01G495500 chr4D 381403765 381404439 674 True 265.50 368 85.8200 1019 1757 2 chr4D.!!$R1 738
5 TraesCS5A01G495500 chr7B 77431942 77432792 850 False 505.00 505 78.5220 1043 1853 1 chr7B.!!$F1 810
6 TraesCS5A01G495500 chr7A 121398162 121398806 644 False 399.00 399 79.3000 1250 1853 1 chr7A.!!$F1 603
7 TraesCS5A01G495500 chr7D 117245068 117245677 609 False 392.00 392 79.5530 1271 1853 1 chr7D.!!$F1 582

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
366 367 0.029834 GCCCATATTGTGAGCGCTTG 59.97 55.0 13.26 3.19 0.0 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1927 4429 0.668401 AAGCCAACCTACGTACACGC 60.668 55.0 0.85 0.0 44.43 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.688735 TCTATGTCAGGGCATCTTCGG 59.311 52.381 0.00 0.00 0.00 4.30
23 24 0.106708 TATGTCAGGGCATCTTCGGC 59.893 55.000 0.00 0.00 0.00 5.54
25 26 2.109126 GTCAGGGCATCTTCGGCAC 61.109 63.158 0.00 0.00 33.97 5.01
26 27 2.825836 CAGGGCATCTTCGGCACC 60.826 66.667 0.00 0.00 34.42 5.01
27 28 3.329889 AGGGCATCTTCGGCACCA 61.330 61.111 0.00 0.00 34.42 4.17
29 30 1.976474 GGGCATCTTCGGCACCAAA 60.976 57.895 0.00 0.00 0.00 3.28
30 31 1.508088 GGCATCTTCGGCACCAAAG 59.492 57.895 0.00 0.00 0.00 2.77
31 32 1.244019 GGCATCTTCGGCACCAAAGT 61.244 55.000 0.00 0.00 0.00 2.66
32 33 0.598065 GCATCTTCGGCACCAAAGTT 59.402 50.000 0.00 0.00 0.00 2.66
33 34 1.000274 GCATCTTCGGCACCAAAGTTT 60.000 47.619 0.00 0.00 0.00 2.66
34 35 2.545742 GCATCTTCGGCACCAAAGTTTT 60.546 45.455 0.00 0.00 0.00 2.43
36 37 2.370349 TCTTCGGCACCAAAGTTTTGA 58.630 42.857 6.18 0.00 40.55 2.69
37 38 2.755655 TCTTCGGCACCAAAGTTTTGAA 59.244 40.909 6.18 0.00 40.55 2.69
38 39 2.861462 TCGGCACCAAAGTTTTGAAG 57.139 45.000 6.18 0.15 40.55 3.02
40 41 1.470632 CGGCACCAAAGTTTTGAAGCA 60.471 47.619 16.92 0.00 40.55 3.91
43 44 3.493176 GGCACCAAAGTTTTGAAGCATCT 60.493 43.478 16.92 0.00 40.55 2.90
46 47 5.535333 CACCAAAGTTTTGAAGCATCTGAT 58.465 37.500 6.18 0.00 40.55 2.90
47 48 5.404366 CACCAAAGTTTTGAAGCATCTGATG 59.596 40.000 13.26 13.26 40.55 3.07
49 50 6.014840 ACCAAAGTTTTGAAGCATCTGATGAT 60.015 34.615 21.30 12.52 40.55 2.45
57 58 3.341263 CATCTGATGATGCAGGGGG 57.659 57.895 12.27 0.00 42.83 5.40
79 80 6.440965 GGGGGATACTCTACTGCTTTATATGT 59.559 42.308 0.00 0.00 37.10 2.29
80 81 7.038231 GGGGGATACTCTACTGCTTTATATGTT 60.038 40.741 0.00 0.00 37.10 2.71
81 82 8.035984 GGGGATACTCTACTGCTTTATATGTTC 58.964 40.741 0.00 0.00 0.00 3.18
82 83 8.035984 GGGATACTCTACTGCTTTATATGTTCC 58.964 40.741 0.00 0.00 0.00 3.62
83 84 8.035984 GGATACTCTACTGCTTTATATGTTCCC 58.964 40.741 0.00 0.00 0.00 3.97
84 85 5.844004 ACTCTACTGCTTTATATGTTCCCG 58.156 41.667 0.00 0.00 0.00 5.14
85 86 5.209818 TCTACTGCTTTATATGTTCCCGG 57.790 43.478 0.00 0.00 0.00 5.73
86 87 4.897076 TCTACTGCTTTATATGTTCCCGGA 59.103 41.667 0.73 0.00 0.00 5.14
87 88 4.497291 ACTGCTTTATATGTTCCCGGAA 57.503 40.909 0.73 0.00 0.00 4.30
88 89 5.048846 ACTGCTTTATATGTTCCCGGAAT 57.951 39.130 0.73 0.00 0.00 3.01
89 90 5.445964 ACTGCTTTATATGTTCCCGGAATT 58.554 37.500 0.73 0.00 0.00 2.17
90 91 5.299279 ACTGCTTTATATGTTCCCGGAATTG 59.701 40.000 0.73 0.00 0.00 2.32
91 92 5.197451 TGCTTTATATGTTCCCGGAATTGT 58.803 37.500 0.73 0.00 0.00 2.71
92 93 5.654650 TGCTTTATATGTTCCCGGAATTGTT 59.345 36.000 0.73 0.00 0.00 2.83
95 96 7.012989 GCTTTATATGTTCCCGGAATTGTTAGT 59.987 37.037 0.73 0.00 0.00 2.24
96 97 8.441312 TTTATATGTTCCCGGAATTGTTAGTC 57.559 34.615 0.73 0.00 0.00 2.59
97 98 2.690786 TGTTCCCGGAATTGTTAGTCG 58.309 47.619 0.73 0.00 0.00 4.18
98 99 2.037511 TGTTCCCGGAATTGTTAGTCGT 59.962 45.455 0.73 0.00 0.00 4.34
99 100 2.373540 TCCCGGAATTGTTAGTCGTG 57.626 50.000 0.73 0.00 0.00 4.35
100 101 0.725117 CCCGGAATTGTTAGTCGTGC 59.275 55.000 0.73 0.00 0.00 5.34
101 102 1.674817 CCCGGAATTGTTAGTCGTGCT 60.675 52.381 0.73 0.00 0.00 4.40
102 103 2.073816 CCGGAATTGTTAGTCGTGCTT 58.926 47.619 0.00 0.00 0.00 3.91
105 106 3.676172 CGGAATTGTTAGTCGTGCTTGTA 59.324 43.478 0.00 0.00 0.00 2.41
106 107 4.150980 CGGAATTGTTAGTCGTGCTTGTAA 59.849 41.667 0.00 0.00 0.00 2.41
107 108 5.163893 CGGAATTGTTAGTCGTGCTTGTAAT 60.164 40.000 0.00 0.00 0.00 1.89
108 109 6.248631 GGAATTGTTAGTCGTGCTTGTAATC 58.751 40.000 0.00 0.00 0.00 1.75
110 111 6.795098 ATTGTTAGTCGTGCTTGTAATCAA 57.205 33.333 0.00 0.00 0.00 2.57
124 125 7.994851 CTTGTAATCAAGCTTAGTTTTCGTC 57.005 36.000 0.00 0.00 43.34 4.20
125 126 7.724305 TTGTAATCAAGCTTAGTTTTCGTCT 57.276 32.000 0.00 0.00 0.00 4.18
126 127 7.724305 TGTAATCAAGCTTAGTTTTCGTCTT 57.276 32.000 0.00 0.00 0.00 3.01
128 129 6.861065 AATCAAGCTTAGTTTTCGTCTTGA 57.139 33.333 0.00 5.17 42.42 3.02
129 130 6.861065 ATCAAGCTTAGTTTTCGTCTTGAA 57.139 33.333 0.00 0.00 41.82 2.69
130 131 6.861065 TCAAGCTTAGTTTTCGTCTTGAAT 57.139 33.333 0.00 0.00 37.54 2.57
132 133 8.018677 TCAAGCTTAGTTTTCGTCTTGAATAG 57.981 34.615 0.00 0.00 37.54 1.73
133 134 7.870954 TCAAGCTTAGTTTTCGTCTTGAATAGA 59.129 33.333 0.00 0.00 37.54 1.98
135 136 7.379750 AGCTTAGTTTTCGTCTTGAATAGAGT 58.620 34.615 0.00 0.00 36.22 3.24
136 137 7.873505 AGCTTAGTTTTCGTCTTGAATAGAGTT 59.126 33.333 0.00 0.00 36.22 3.01
137 138 8.163516 GCTTAGTTTTCGTCTTGAATAGAGTTC 58.836 37.037 0.00 0.00 36.22 3.01
138 139 8.530269 TTAGTTTTCGTCTTGAATAGAGTTCC 57.470 34.615 0.00 0.00 36.22 3.62
139 140 5.932883 AGTTTTCGTCTTGAATAGAGTTCCC 59.067 40.000 0.00 0.00 36.22 3.97
140 141 5.477607 TTTCGTCTTGAATAGAGTTCCCA 57.522 39.130 0.00 0.00 36.22 4.37
141 142 4.451629 TCGTCTTGAATAGAGTTCCCAC 57.548 45.455 0.00 0.00 32.23 4.61
142 143 3.194968 TCGTCTTGAATAGAGTTCCCACC 59.805 47.826 0.00 0.00 32.23 4.61
143 144 3.679083 CGTCTTGAATAGAGTTCCCACCC 60.679 52.174 0.00 0.00 32.23 4.61
144 145 2.844348 TCTTGAATAGAGTTCCCACCCC 59.156 50.000 0.00 0.00 0.00 4.95
145 146 1.591768 TGAATAGAGTTCCCACCCCC 58.408 55.000 0.00 0.00 0.00 5.40
146 147 1.082194 TGAATAGAGTTCCCACCCCCT 59.918 52.381 0.00 0.00 0.00 4.79
147 148 1.769465 GAATAGAGTTCCCACCCCCTC 59.231 57.143 0.00 0.00 0.00 4.30
149 150 0.722676 TAGAGTTCCCACCCCCTCAT 59.277 55.000 0.00 0.00 0.00 2.90
150 151 0.722676 AGAGTTCCCACCCCCTCATA 59.277 55.000 0.00 0.00 0.00 2.15
151 152 1.298382 AGAGTTCCCACCCCCTCATAT 59.702 52.381 0.00 0.00 0.00 1.78
152 153 1.421646 GAGTTCCCACCCCCTCATATG 59.578 57.143 0.00 0.00 0.00 1.78
153 154 1.222567 GTTCCCACCCCCTCATATGT 58.777 55.000 1.90 0.00 0.00 2.29
154 155 2.021441 AGTTCCCACCCCCTCATATGTA 60.021 50.000 1.90 0.00 0.00 2.29
156 157 1.295600 TCCCACCCCCTCATATGTACA 59.704 52.381 0.00 0.00 0.00 2.90
158 159 3.145087 TCCCACCCCCTCATATGTACATA 59.855 47.826 17.65 17.65 0.00 2.29
160 161 3.519510 CCACCCCCTCATATGTACATAGG 59.480 52.174 19.12 19.12 0.00 2.57
161 162 4.425772 CACCCCCTCATATGTACATAGGA 58.574 47.826 24.39 24.39 33.65 2.94
163 164 5.488919 CACCCCCTCATATGTACATAGGATT 59.511 44.000 25.69 5.86 34.17 3.01
165 166 5.726308 CCCCCTCATATGTACATAGGATTGA 59.274 44.000 25.69 19.23 34.17 2.57
166 167 6.388100 CCCCCTCATATGTACATAGGATTGAT 59.612 42.308 25.69 5.11 34.17 2.57
167 168 7.278135 CCCCTCATATGTACATAGGATTGATG 58.722 42.308 25.69 17.09 34.17 3.07
169 170 8.542926 CCCTCATATGTACATAGGATTGATGAA 58.457 37.037 25.69 6.03 34.17 2.57
170 171 9.948964 CCTCATATGTACATAGGATTGATGAAA 57.051 33.333 25.69 5.41 34.17 2.69
180 181 8.355169 ACATAGGATTGATGAAAATGTACATGC 58.645 33.333 9.63 3.00 0.00 4.06
181 182 8.573885 CATAGGATTGATGAAAATGTACATGCT 58.426 33.333 9.63 0.00 0.00 3.79
182 183 7.414222 AGGATTGATGAAAATGTACATGCTT 57.586 32.000 9.63 6.14 0.00 3.91
183 184 8.523915 AGGATTGATGAAAATGTACATGCTTA 57.476 30.769 9.63 0.00 0.00 3.09
184 185 9.139734 AGGATTGATGAAAATGTACATGCTTAT 57.860 29.630 9.63 1.91 0.00 1.73
185 186 9.754382 GGATTGATGAAAATGTACATGCTTATT 57.246 29.630 9.63 0.00 0.00 1.40
200 201 8.238481 ACATGCTTATTTTTAAACATTCACGG 57.762 30.769 0.00 0.00 0.00 4.94
203 204 7.210873 TGCTTATTTTTAAACATTCACGGGTT 58.789 30.769 0.00 0.00 0.00 4.11
204 205 7.711339 TGCTTATTTTTAAACATTCACGGGTTT 59.289 29.630 0.00 0.00 40.15 3.27
205 206 8.007152 GCTTATTTTTAAACATTCACGGGTTTG 58.993 33.333 0.00 0.00 37.73 2.93
206 207 9.250624 CTTATTTTTAAACATTCACGGGTTTGA 57.749 29.630 0.00 0.00 37.73 2.69
207 208 7.707774 ATTTTTAAACATTCACGGGTTTGAG 57.292 32.000 0.00 0.00 37.73 3.02
208 209 6.452494 TTTTAAACATTCACGGGTTTGAGA 57.548 33.333 0.00 0.00 37.73 3.27
209 210 6.452494 TTTAAACATTCACGGGTTTGAGAA 57.548 33.333 0.00 0.00 37.73 2.87
212 213 5.529581 AACATTCACGGGTTTGAGAAAAT 57.470 34.783 0.00 0.00 0.00 1.82
213 214 6.642707 AACATTCACGGGTTTGAGAAAATA 57.357 33.333 0.00 0.00 0.00 1.40
214 215 6.834168 ACATTCACGGGTTTGAGAAAATAT 57.166 33.333 0.00 0.00 0.00 1.28
216 217 8.343168 ACATTCACGGGTTTGAGAAAATATTA 57.657 30.769 0.00 0.00 0.00 0.98
217 218 8.798402 ACATTCACGGGTTTGAGAAAATATTAA 58.202 29.630 0.00 0.00 0.00 1.40
290 291 9.280174 ACCAACTGAAAATCGTAAAATTAGAGA 57.720 29.630 0.00 0.00 0.00 3.10
291 292 9.543018 CCAACTGAAAATCGTAAAATTAGAGAC 57.457 33.333 0.00 0.00 0.00 3.36
295 296 9.676899 CTGAAAATCGTAAAATTAGAGACTTCG 57.323 33.333 0.00 0.00 0.00 3.79
296 297 9.414295 TGAAAATCGTAAAATTAGAGACTTCGA 57.586 29.630 0.00 0.00 0.00 3.71
297 298 9.888637 GAAAATCGTAAAATTAGAGACTTCGAG 57.111 33.333 0.00 0.00 0.00 4.04
298 299 9.635520 AAAATCGTAAAATTAGAGACTTCGAGA 57.364 29.630 0.00 0.00 0.00 4.04
300 301 9.635520 AATCGTAAAATTAGAGACTTCGAGAAA 57.364 29.630 0.00 0.00 0.00 2.52
301 302 9.635520 ATCGTAAAATTAGAGACTTCGAGAAAA 57.364 29.630 0.00 0.00 0.00 2.29
302 303 9.467258 TCGTAAAATTAGAGACTTCGAGAAAAA 57.533 29.630 0.00 0.00 0.00 1.94
322 323 3.457610 AAACAATTGACAACTGCAGGG 57.542 42.857 19.93 12.40 0.00 4.45
323 324 2.363306 ACAATTGACAACTGCAGGGA 57.637 45.000 19.93 0.00 0.00 4.20
324 325 2.233271 ACAATTGACAACTGCAGGGAG 58.767 47.619 19.93 9.68 0.00 4.30
325 326 1.068055 CAATTGACAACTGCAGGGAGC 60.068 52.381 19.93 5.32 45.96 4.70
326 327 0.610232 ATTGACAACTGCAGGGAGCC 60.610 55.000 19.93 3.62 44.83 4.70
327 328 2.743928 GACAACTGCAGGGAGCCG 60.744 66.667 19.93 1.78 44.83 5.52
329 330 2.270205 CAACTGCAGGGAGCCGAT 59.730 61.111 19.93 0.00 44.83 4.18
331 332 2.293318 AACTGCAGGGAGCCGATGA 61.293 57.895 19.93 0.00 44.83 2.92
332 333 1.841302 AACTGCAGGGAGCCGATGAA 61.841 55.000 19.93 0.00 44.83 2.57
333 334 1.078214 CTGCAGGGAGCCGATGAAA 60.078 57.895 5.57 0.00 44.83 2.69
334 335 1.078214 TGCAGGGAGCCGATGAAAG 60.078 57.895 0.00 0.00 44.83 2.62
335 336 1.221840 GCAGGGAGCCGATGAAAGA 59.778 57.895 0.00 0.00 37.23 2.52
336 337 1.092345 GCAGGGAGCCGATGAAAGAC 61.092 60.000 0.00 0.00 37.23 3.01
337 338 0.250234 CAGGGAGCCGATGAAAGACA 59.750 55.000 0.00 0.00 0.00 3.41
339 340 1.351017 AGGGAGCCGATGAAAGACAAA 59.649 47.619 0.00 0.00 0.00 2.83
341 342 2.098117 GGGAGCCGATGAAAGACAAATG 59.902 50.000 0.00 0.00 0.00 2.32
343 344 2.094675 AGCCGATGAAAGACAAATGGG 58.905 47.619 0.00 0.00 0.00 4.00
344 345 1.469767 GCCGATGAAAGACAAATGGGC 60.470 52.381 0.00 0.00 0.00 5.36
347 348 1.134946 GATGAAAGACAAATGGGCCGG 59.865 52.381 0.00 0.00 0.00 6.13
348 349 1.215382 GAAAGACAAATGGGCCGGC 59.785 57.895 21.18 21.18 0.00 6.13
349 350 2.225791 GAAAGACAAATGGGCCGGCC 62.226 60.000 38.57 38.57 0.00 6.13
359 360 2.194597 GGCCGGCCCATATTGTGA 59.805 61.111 36.64 0.00 0.00 3.58
360 361 1.898574 GGCCGGCCCATATTGTGAG 60.899 63.158 36.64 0.00 0.00 3.51
361 362 2.555547 GCCGGCCCATATTGTGAGC 61.556 63.158 18.11 0.00 0.00 4.26
362 363 2.253758 CCGGCCCATATTGTGAGCG 61.254 63.158 0.00 0.00 0.00 5.03
363 364 2.896801 CGGCCCATATTGTGAGCGC 61.897 63.158 0.00 0.00 0.00 5.92
365 366 1.103398 GGCCCATATTGTGAGCGCTT 61.103 55.000 13.26 0.00 0.00 4.68
366 367 0.029834 GCCCATATTGTGAGCGCTTG 59.970 55.000 13.26 3.19 0.00 4.01
367 368 0.664761 CCCATATTGTGAGCGCTTGG 59.335 55.000 13.26 13.65 0.00 3.61
391 392 4.162320 ACAACGATCCATAGGACTTGTCAT 59.838 41.667 3.08 0.00 32.98 3.06
409 410 4.098349 TGTCATAGAAATTTGGCTGCATCC 59.902 41.667 0.00 0.00 0.00 3.51
411 412 1.838112 AGAAATTTGGCTGCATCCGA 58.162 45.000 1.44 0.00 0.00 4.55
469 2831 2.291365 CTGTGCATCCCGATTCATTGA 58.709 47.619 0.00 0.00 0.00 2.57
618 2981 1.790838 CGTAGACGCTCTGCTGTACAC 60.791 57.143 0.00 0.00 0.00 2.90
623 2986 1.075425 CGCTCTGCTGTACACTGCTC 61.075 60.000 11.74 0.17 40.79 4.26
662 3027 3.000727 GCGCCTATGAATAAATACGGCT 58.999 45.455 0.00 0.00 34.06 5.52
666 3031 5.288712 CGCCTATGAATAAATACGGCTACAG 59.711 44.000 0.00 0.00 34.06 2.74
944 3309 2.168521 ACAATACACACCGGAGATGAGG 59.831 50.000 9.46 0.00 0.00 3.86
1120 3489 1.589414 CAGATGGAAGGAAGTCCCCT 58.411 55.000 0.00 0.00 36.80 4.79
1147 3518 3.508793 AGCTGGTACGTTCTGCTACTAAA 59.491 43.478 16.88 0.00 37.59 1.85
1151 3522 4.156556 TGGTACGTTCTGCTACTAAACGAT 59.843 41.667 13.08 1.71 46.42 3.73
1157 3532 5.053416 CGTTCTGCTACTAAACGATCGTAAC 60.053 44.000 23.04 15.89 46.42 2.50
1179 3555 3.518303 CCCCTAGCTTGGTAAACAGTAGT 59.482 47.826 13.38 0.00 0.00 2.73
1212 3588 4.793201 TCTAGACAATGGAGTGCTAGCTA 58.207 43.478 17.23 0.00 31.15 3.32
1213 3589 4.824537 TCTAGACAATGGAGTGCTAGCTAG 59.175 45.833 16.84 16.84 31.15 3.42
1214 3590 3.370104 AGACAATGGAGTGCTAGCTAGT 58.630 45.455 21.62 5.25 0.00 2.57
1237 3613 3.106407 GTGAGTGAGTGACGCGCC 61.106 66.667 5.73 0.00 0.00 6.53
1238 3614 3.295273 TGAGTGAGTGACGCGCCT 61.295 61.111 5.73 0.00 0.00 5.52
1867 4344 4.148891 CGGATTAACGCTCACACTTTTTC 58.851 43.478 0.00 0.00 0.00 2.29
1928 4430 3.303881 TGTATCGATACAGCTCCATGC 57.696 47.619 29.79 4.97 38.28 4.06
1938 4440 2.578369 GCTCCATGCGTGTACGTAG 58.422 57.895 4.96 0.00 42.22 3.51
1967 4472 4.617808 TCGTGCTGAGTACTGACTAATC 57.382 45.455 0.00 0.00 35.45 1.75
1985 4492 4.679373 AATCAGTAGCTACCTGTGATGG 57.321 45.455 21.36 4.66 30.68 3.51
2120 4628 8.974060 TTGTATTTCTAAATAAGAATCGGCCT 57.026 30.769 0.00 0.00 43.75 5.19
2121 4629 8.974060 TGTATTTCTAAATAAGAATCGGCCTT 57.026 30.769 0.00 0.00 43.75 4.35
2122 4630 9.403583 TGTATTTCTAAATAAGAATCGGCCTTT 57.596 29.630 0.00 0.00 43.75 3.11
2146 4654 7.519032 TTTTGGTTCATAGGAAAGTTGTAGG 57.481 36.000 0.00 0.00 34.13 3.18
2147 4655 6.442541 TTGGTTCATAGGAAAGTTGTAGGA 57.557 37.500 0.00 0.00 34.13 2.94
2148 4656 6.442541 TGGTTCATAGGAAAGTTGTAGGAA 57.557 37.500 0.00 0.00 34.13 3.36
2149 4657 7.027874 TGGTTCATAGGAAAGTTGTAGGAAT 57.972 36.000 0.00 0.00 34.13 3.01
2150 4658 7.466804 TGGTTCATAGGAAAGTTGTAGGAATT 58.533 34.615 0.00 0.00 34.13 2.17
2151 4659 7.393234 TGGTTCATAGGAAAGTTGTAGGAATTG 59.607 37.037 0.00 0.00 34.13 2.32
2152 4660 7.251281 GTTCATAGGAAAGTTGTAGGAATTGC 58.749 38.462 0.00 0.00 34.13 3.56
2153 4661 6.480763 TCATAGGAAAGTTGTAGGAATTGCA 58.519 36.000 0.00 0.00 0.00 4.08
2154 4662 6.945435 TCATAGGAAAGTTGTAGGAATTGCAA 59.055 34.615 0.00 0.00 0.00 4.08
2155 4663 7.450014 TCATAGGAAAGTTGTAGGAATTGCAAA 59.550 33.333 1.71 0.00 33.01 3.68
2156 4664 6.089249 AGGAAAGTTGTAGGAATTGCAAAG 57.911 37.500 1.71 0.00 33.01 2.77
2157 4665 5.833131 AGGAAAGTTGTAGGAATTGCAAAGA 59.167 36.000 1.71 0.00 33.01 2.52
2158 4666 6.323739 AGGAAAGTTGTAGGAATTGCAAAGAA 59.676 34.615 1.71 0.00 33.01 2.52
2159 4667 7.015584 AGGAAAGTTGTAGGAATTGCAAAGAAT 59.984 33.333 1.71 0.00 33.01 2.40
2160 4668 8.303876 GGAAAGTTGTAGGAATTGCAAAGAATA 58.696 33.333 1.71 0.00 33.01 1.75
2161 4669 9.691362 GAAAGTTGTAGGAATTGCAAAGAATAA 57.309 29.630 1.71 0.00 33.01 1.40
2193 4701 4.623932 GGAAAAATTCCTTTGAAGCCCT 57.376 40.909 1.86 0.00 46.57 5.19
2194 4702 4.973168 GGAAAAATTCCTTTGAAGCCCTT 58.027 39.130 1.86 0.00 46.57 3.95
2195 4703 5.376625 GGAAAAATTCCTTTGAAGCCCTTT 58.623 37.500 1.86 0.00 46.57 3.11
2196 4704 5.239306 GGAAAAATTCCTTTGAAGCCCTTTG 59.761 40.000 1.86 0.00 46.57 2.77
2197 4705 4.356405 AAATTCCTTTGAAGCCCTTTGG 57.644 40.909 0.00 0.00 33.05 3.28
2198 4706 2.470057 TTCCTTTGAAGCCCTTTGGT 57.530 45.000 0.00 0.00 0.00 3.67
2199 4707 2.470057 TCCTTTGAAGCCCTTTGGTT 57.530 45.000 0.00 0.00 37.39 3.67
2200 4708 2.758130 TCCTTTGAAGCCCTTTGGTTT 58.242 42.857 0.00 0.00 37.85 3.27
2201 4709 2.433970 TCCTTTGAAGCCCTTTGGTTTG 59.566 45.455 0.00 0.00 34.87 2.93
2202 4710 2.170397 CCTTTGAAGCCCTTTGGTTTGT 59.830 45.455 0.00 0.00 34.87 2.83
2203 4711 3.386402 CCTTTGAAGCCCTTTGGTTTGTA 59.614 43.478 0.00 0.00 34.87 2.41
2204 4712 4.501400 CCTTTGAAGCCCTTTGGTTTGTAG 60.501 45.833 0.00 0.00 34.87 2.74
2205 4713 2.593026 TGAAGCCCTTTGGTTTGTAGG 58.407 47.619 0.00 0.00 34.87 3.18
2206 4714 2.175931 TGAAGCCCTTTGGTTTGTAGGA 59.824 45.455 0.00 0.00 34.87 2.94
2207 4715 3.227614 GAAGCCCTTTGGTTTGTAGGAA 58.772 45.455 0.00 0.00 34.87 3.36
2208 4716 3.542969 AGCCCTTTGGTTTGTAGGAAT 57.457 42.857 0.00 0.00 0.00 3.01
2209 4717 3.165071 AGCCCTTTGGTTTGTAGGAATG 58.835 45.455 0.00 0.00 0.00 2.67
2210 4718 3.161866 GCCCTTTGGTTTGTAGGAATGA 58.838 45.455 0.00 0.00 0.00 2.57
2211 4719 3.193479 GCCCTTTGGTTTGTAGGAATGAG 59.807 47.826 0.00 0.00 0.00 2.90
2212 4720 4.407365 CCCTTTGGTTTGTAGGAATGAGT 58.593 43.478 0.00 0.00 0.00 3.41
2213 4721 4.832823 CCCTTTGGTTTGTAGGAATGAGTT 59.167 41.667 0.00 0.00 0.00 3.01
2214 4722 5.048013 CCCTTTGGTTTGTAGGAATGAGTTC 60.048 44.000 0.00 0.00 0.00 3.01
2258 4766 9.933723 AAGAATTAATCCTTCACATTTCAAAGG 57.066 29.630 0.00 0.00 40.80 3.11
2285 4793 6.418057 AAAACATTGGCCTAAACTCAATGA 57.582 33.333 18.30 0.00 46.15 2.57
2286 4794 6.418057 AAACATTGGCCTAAACTCAATGAA 57.582 33.333 18.30 0.00 46.15 2.57
2287 4795 6.418057 AACATTGGCCTAAACTCAATGAAA 57.582 33.333 18.30 0.00 46.15 2.69
2288 4796 6.418057 ACATTGGCCTAAACTCAATGAAAA 57.582 33.333 18.30 0.00 46.15 2.29
2289 4797 7.008021 ACATTGGCCTAAACTCAATGAAAAT 57.992 32.000 18.30 0.00 46.15 1.82
2290 4798 7.452562 ACATTGGCCTAAACTCAATGAAAATT 58.547 30.769 18.30 0.00 46.15 1.82
2291 4799 7.938490 ACATTGGCCTAAACTCAATGAAAATTT 59.062 29.630 18.30 0.00 46.15 1.82
2292 4800 8.785946 CATTGGCCTAAACTCAATGAAAATTTT 58.214 29.630 3.32 2.28 46.15 1.82
2293 4801 8.744568 TTGGCCTAAACTCAATGAAAATTTTT 57.255 26.923 3.32 0.00 0.00 1.94
2294 4802 8.376889 TGGCCTAAACTCAATGAAAATTTTTC 57.623 30.769 13.76 13.76 0.00 2.29
2295 4803 8.210265 TGGCCTAAACTCAATGAAAATTTTTCT 58.790 29.630 19.64 5.92 0.00 2.52
2296 4804 9.705290 GGCCTAAACTCAATGAAAATTTTTCTA 57.295 29.630 19.64 9.13 0.00 2.10
2347 4855 8.789825 ATTCTATAGGATTTGAGATGCATGTC 57.210 34.615 16.63 16.63 0.00 3.06
2348 4856 7.307131 TCTATAGGATTTGAGATGCATGTCA 57.693 36.000 21.70 21.70 0.00 3.58
2349 4857 7.914859 TCTATAGGATTTGAGATGCATGTCAT 58.085 34.615 25.41 13.07 38.32 3.06
2362 4870 6.862711 ATGCATGTCATCTCACTTTCTATG 57.137 37.500 0.00 0.00 0.00 2.23
2363 4871 5.981174 TGCATGTCATCTCACTTTCTATGA 58.019 37.500 0.00 0.00 0.00 2.15
2364 4872 6.589135 TGCATGTCATCTCACTTTCTATGAT 58.411 36.000 0.00 0.00 31.49 2.45
2365 4873 7.052248 TGCATGTCATCTCACTTTCTATGATT 58.948 34.615 0.00 0.00 31.49 2.57
2366 4874 7.555195 TGCATGTCATCTCACTTTCTATGATTT 59.445 33.333 0.00 0.00 31.49 2.17
2367 4875 8.404000 GCATGTCATCTCACTTTCTATGATTTT 58.596 33.333 0.00 0.00 31.49 1.82
2370 4878 9.730705 TGTCATCTCACTTTCTATGATTTTTCT 57.269 29.630 0.00 0.00 31.49 2.52
2406 4914 9.595823 TTATTTCTATCCTACGAACCAAAGAAG 57.404 33.333 0.00 0.00 0.00 2.85
2407 4915 6.845758 TTCTATCCTACGAACCAAAGAAGA 57.154 37.500 0.00 0.00 0.00 2.87
2408 4916 6.205101 TCTATCCTACGAACCAAAGAAGAC 57.795 41.667 0.00 0.00 0.00 3.01
2409 4917 3.672767 TCCTACGAACCAAAGAAGACC 57.327 47.619 0.00 0.00 0.00 3.85
2425 4933 9.706691 CAAAGAAGACCTAAGTATACTTCAACA 57.293 33.333 21.25 3.61 39.22 3.33
2428 4936 9.256228 AGAAGACCTAAGTATACTTCAACATGA 57.744 33.333 21.25 1.80 39.22 3.07
2431 4939 9.696572 AGACCTAAGTATACTTCAACATGACTA 57.303 33.333 21.25 0.00 37.40 2.59
2481 4991 4.339247 TCTGCCAACCTCTTTTTCTTTGAG 59.661 41.667 0.00 0.00 0.00 3.02
2487 4997 4.693538 CCTCTTTTTCTTTGAGGCTAGC 57.306 45.455 6.04 6.04 40.52 3.42
2488 4998 3.441922 CCTCTTTTTCTTTGAGGCTAGCC 59.558 47.826 27.19 27.19 40.52 3.93
2489 4999 4.074970 CTCTTTTTCTTTGAGGCTAGCCA 58.925 43.478 34.70 13.55 38.92 4.75
2490 5000 4.666512 TCTTTTTCTTTGAGGCTAGCCAT 58.333 39.130 34.70 19.95 38.92 4.40
2491 5001 5.815581 TCTTTTTCTTTGAGGCTAGCCATA 58.184 37.500 34.70 20.30 38.92 2.74
2495 5853 2.435805 TCTTTGAGGCTAGCCATAGTGG 59.564 50.000 34.70 18.96 41.55 4.00
2498 5856 1.462238 AGGCTAGCCATAGTGGGGG 60.462 63.158 34.70 0.00 38.19 5.40
2499 5857 1.770518 GGCTAGCCATAGTGGGGGT 60.771 63.158 29.33 0.00 38.19 4.95
2501 5859 1.430992 GCTAGCCATAGTGGGGGTAA 58.569 55.000 2.29 0.00 37.88 2.85
2502 5860 1.071857 GCTAGCCATAGTGGGGGTAAC 59.928 57.143 2.29 0.00 37.88 2.50
2507 5865 2.105993 GCCATAGTGGGGGTAACTTAGG 59.894 54.545 0.00 0.00 38.19 2.69
2509 5867 4.559726 CCATAGTGGGGGTAACTTAGGTA 58.440 47.826 0.00 0.00 32.67 3.08
2510 5868 4.591924 CCATAGTGGGGGTAACTTAGGTAG 59.408 50.000 0.00 0.00 32.67 3.18
2512 5870 4.972999 AGTGGGGGTAACTTAGGTAGTA 57.027 45.455 0.00 0.00 35.54 1.82
2516 5874 5.485353 GTGGGGGTAACTTAGGTAGTAACTT 59.515 44.000 0.00 0.00 35.54 2.66
2519 5877 7.180229 TGGGGGTAACTTAGGTAGTAACTTAAC 59.820 40.741 0.00 0.00 35.54 2.01
2520 5878 7.180229 GGGGGTAACTTAGGTAGTAACTTAACA 59.820 40.741 0.00 0.00 35.54 2.41
2521 5879 8.035394 GGGGTAACTTAGGTAGTAACTTAACAC 58.965 40.741 0.00 0.00 35.54 3.32
2522 5880 8.585018 GGGTAACTTAGGTAGTAACTTAACACA 58.415 37.037 0.00 0.00 35.54 3.72
2523 5881 9.411801 GGTAACTTAGGTAGTAACTTAACACAC 57.588 37.037 0.00 0.00 35.54 3.82
2524 5882 9.411801 GTAACTTAGGTAGTAACTTAACACACC 57.588 37.037 0.00 0.00 35.54 4.16
2532 5890 6.736110 AGTAACTTAACACACCCTAAGACA 57.264 37.500 0.00 0.00 0.00 3.41
2533 5891 7.128234 AGTAACTTAACACACCCTAAGACAA 57.872 36.000 0.00 0.00 0.00 3.18
2535 5893 8.215736 AGTAACTTAACACACCCTAAGACAATT 58.784 33.333 0.00 0.00 0.00 2.32
2536 5894 7.891498 AACTTAACACACCCTAAGACAATTT 57.109 32.000 0.00 0.00 0.00 1.82
2537 5895 7.891498 ACTTAACACACCCTAAGACAATTTT 57.109 32.000 0.00 0.00 0.00 1.82
2538 5896 7.712797 ACTTAACACACCCTAAGACAATTTTG 58.287 34.615 0.00 0.00 0.00 2.44
2539 5897 7.340999 ACTTAACACACCCTAAGACAATTTTGT 59.659 33.333 0.00 0.00 45.65 2.83
2543 5901 8.245195 ACACACCCTAAGACAATTTTGTTTAT 57.755 30.769 0.00 0.00 42.43 1.40
2544 5902 8.141268 ACACACCCTAAGACAATTTTGTTTATG 58.859 33.333 0.00 0.00 42.43 1.90
2545 5903 8.141268 CACACCCTAAGACAATTTTGTTTATGT 58.859 33.333 0.00 0.00 42.43 2.29
2546 5904 8.141268 ACACCCTAAGACAATTTTGTTTATGTG 58.859 33.333 0.00 9.98 42.43 3.21
2548 5906 6.589907 CCCTAAGACAATTTTGTTTATGTGGC 59.410 38.462 0.00 0.00 42.43 5.01
2550 5908 7.655328 CCTAAGACAATTTTGTTTATGTGGCAA 59.345 33.333 0.00 0.00 42.43 4.52
2551 5909 7.481275 AAGACAATTTTGTTTATGTGGCAAG 57.519 32.000 0.00 0.00 42.43 4.01
2552 5910 6.581712 AGACAATTTTGTTTATGTGGCAAGT 58.418 32.000 0.00 0.00 42.43 3.16
2553 5911 7.721402 AGACAATTTTGTTTATGTGGCAAGTA 58.279 30.769 0.00 0.00 42.43 2.24
2554 5912 8.367156 AGACAATTTTGTTTATGTGGCAAGTAT 58.633 29.630 0.00 0.00 42.43 2.12
2555 5913 8.900983 ACAATTTTGTTTATGTGGCAAGTATT 57.099 26.923 0.00 0.00 38.47 1.89
2556 5914 9.336171 ACAATTTTGTTTATGTGGCAAGTATTT 57.664 25.926 0.00 0.00 38.47 1.40
2568 5926 7.857456 TGTGGCAAGTATTTAATAAGGAGAGA 58.143 34.615 0.00 0.00 0.00 3.10
2569 5927 7.987458 TGTGGCAAGTATTTAATAAGGAGAGAG 59.013 37.037 0.00 0.00 0.00 3.20
2570 5928 7.442666 GTGGCAAGTATTTAATAAGGAGAGAGG 59.557 40.741 0.00 0.00 0.00 3.69
2571 5929 7.127339 TGGCAAGTATTTAATAAGGAGAGAGGT 59.873 37.037 0.00 0.00 0.00 3.85
2572 5930 7.442666 GGCAAGTATTTAATAAGGAGAGAGGTG 59.557 40.741 0.00 0.00 0.00 4.00
2573 5931 7.041712 GCAAGTATTTAATAAGGAGAGAGGTGC 60.042 40.741 0.00 0.00 0.00 5.01
2574 5932 7.922699 AGTATTTAATAAGGAGAGAGGTGCT 57.077 36.000 0.00 0.00 0.00 4.40
2575 5933 8.325477 AGTATTTAATAAGGAGAGAGGTGCTT 57.675 34.615 0.00 0.00 32.20 3.91
2576 5934 8.207545 AGTATTTAATAAGGAGAGAGGTGCTTG 58.792 37.037 0.00 0.00 29.82 4.01
2577 5935 3.922171 AATAAGGAGAGAGGTGCTTGG 57.078 47.619 0.00 0.00 29.82 3.61
2578 5936 2.623418 TAAGGAGAGAGGTGCTTGGA 57.377 50.000 0.00 0.00 29.82 3.53
2580 5938 0.116143 AGGAGAGAGGTGCTTGGAGT 59.884 55.000 0.00 0.00 0.00 3.85
2581 5939 1.359474 AGGAGAGAGGTGCTTGGAGTA 59.641 52.381 0.00 0.00 0.00 2.59
2582 5940 2.180276 GGAGAGAGGTGCTTGGAGTAA 58.820 52.381 0.00 0.00 0.00 2.24
2583 5941 2.093921 GGAGAGAGGTGCTTGGAGTAAC 60.094 54.545 0.00 0.00 0.00 2.50
2817 6523 1.082104 GCCAGTGCACGTACAAAGC 60.082 57.895 12.01 4.22 37.47 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.511540 CCGAAGATGCCCTGACATAGATA 59.488 47.826 0.00 0.00 0.00 1.98
1 2 2.301296 CCGAAGATGCCCTGACATAGAT 59.699 50.000 0.00 0.00 0.00 1.98
2 3 1.688735 CCGAAGATGCCCTGACATAGA 59.311 52.381 0.00 0.00 0.00 1.98
3 4 1.875576 GCCGAAGATGCCCTGACATAG 60.876 57.143 0.00 0.00 0.00 2.23
4 5 0.106708 GCCGAAGATGCCCTGACATA 59.893 55.000 0.00 0.00 0.00 2.29
6 7 2.268920 GCCGAAGATGCCCTGACA 59.731 61.111 0.00 0.00 0.00 3.58
7 8 2.109126 GTGCCGAAGATGCCCTGAC 61.109 63.158 0.00 0.00 0.00 3.51
8 9 2.268920 GTGCCGAAGATGCCCTGA 59.731 61.111 0.00 0.00 0.00 3.86
10 11 2.424842 TTTGGTGCCGAAGATGCCCT 62.425 55.000 0.00 0.00 0.00 5.19
11 12 1.937546 CTTTGGTGCCGAAGATGCCC 61.938 60.000 11.85 0.00 39.23 5.36
12 13 1.244019 ACTTTGGTGCCGAAGATGCC 61.244 55.000 21.56 0.00 39.23 4.40
13 14 0.598065 AACTTTGGTGCCGAAGATGC 59.402 50.000 21.56 0.00 39.23 3.91
14 15 3.052036 CAAAACTTTGGTGCCGAAGATG 58.948 45.455 21.56 13.89 39.23 2.90
15 16 2.955660 TCAAAACTTTGGTGCCGAAGAT 59.044 40.909 21.56 9.68 39.23 2.40
16 17 2.370349 TCAAAACTTTGGTGCCGAAGA 58.630 42.857 21.56 0.09 39.23 2.87
17 18 2.861462 TCAAAACTTTGGTGCCGAAG 57.139 45.000 14.91 14.91 41.84 3.79
18 19 2.737039 GCTTCAAAACTTTGGTGCCGAA 60.737 45.455 2.49 0.00 38.66 4.30
19 20 1.202359 GCTTCAAAACTTTGGTGCCGA 60.202 47.619 2.49 0.00 38.66 5.54
20 21 1.208259 GCTTCAAAACTTTGGTGCCG 58.792 50.000 2.49 0.00 38.66 5.69
22 23 3.492011 CAGATGCTTCAAAACTTTGGTGC 59.508 43.478 2.07 7.57 38.66 5.01
23 24 4.935702 TCAGATGCTTCAAAACTTTGGTG 58.064 39.130 2.07 0.00 38.66 4.17
25 26 5.775686 TCATCAGATGCTTCAAAACTTTGG 58.224 37.500 5.41 0.00 38.66 3.28
26 27 7.278211 CATCATCAGATGCTTCAAAACTTTG 57.722 36.000 5.41 0.00 44.61 2.77
54 55 6.440965 ACATATAAAGCAGTAGAGTATCCCCC 59.559 42.308 0.00 0.00 33.66 5.40
55 56 7.483580 ACATATAAAGCAGTAGAGTATCCCC 57.516 40.000 0.00 0.00 33.66 4.81
57 58 8.035984 GGGAACATATAAAGCAGTAGAGTATCC 58.964 40.741 0.00 0.00 33.66 2.59
59 60 7.309867 CCGGGAACATATAAAGCAGTAGAGTAT 60.310 40.741 0.00 0.00 0.00 2.12
60 61 6.015688 CCGGGAACATATAAAGCAGTAGAGTA 60.016 42.308 0.00 0.00 0.00 2.59
62 63 5.010719 TCCGGGAACATATAAAGCAGTAGAG 59.989 44.000 0.00 0.00 0.00 2.43
63 64 4.897076 TCCGGGAACATATAAAGCAGTAGA 59.103 41.667 0.00 0.00 0.00 2.59
64 65 5.209818 TCCGGGAACATATAAAGCAGTAG 57.790 43.478 0.00 0.00 0.00 2.57
65 66 5.617528 TTCCGGGAACATATAAAGCAGTA 57.382 39.130 5.09 0.00 0.00 2.74
66 67 4.497291 TTCCGGGAACATATAAAGCAGT 57.503 40.909 5.09 0.00 0.00 4.40
67 68 5.299279 ACAATTCCGGGAACATATAAAGCAG 59.701 40.000 12.53 0.00 0.00 4.24
68 69 5.197451 ACAATTCCGGGAACATATAAAGCA 58.803 37.500 12.53 0.00 0.00 3.91
69 70 5.767816 ACAATTCCGGGAACATATAAAGC 57.232 39.130 12.53 0.00 0.00 3.51
70 71 8.446599 ACTAACAATTCCGGGAACATATAAAG 57.553 34.615 12.53 6.71 0.00 1.85
71 72 7.225145 CGACTAACAATTCCGGGAACATATAAA 59.775 37.037 12.53 0.00 0.00 1.40
72 73 6.702723 CGACTAACAATTCCGGGAACATATAA 59.297 38.462 12.53 0.00 0.00 0.98
73 74 6.183360 ACGACTAACAATTCCGGGAACATATA 60.183 38.462 12.53 3.14 0.00 0.86
74 75 5.054477 CGACTAACAATTCCGGGAACATAT 58.946 41.667 12.53 2.05 0.00 1.78
75 76 4.081531 ACGACTAACAATTCCGGGAACATA 60.082 41.667 12.53 2.45 0.00 2.29
76 77 3.267483 CGACTAACAATTCCGGGAACAT 58.733 45.455 12.53 0.95 0.00 2.71
77 78 2.037511 ACGACTAACAATTCCGGGAACA 59.962 45.455 12.53 0.00 0.00 3.18
79 80 2.690786 CACGACTAACAATTCCGGGAA 58.309 47.619 12.67 12.67 0.00 3.97
80 81 1.673626 GCACGACTAACAATTCCGGGA 60.674 52.381 0.00 0.00 0.00 5.14
81 82 0.725117 GCACGACTAACAATTCCGGG 59.275 55.000 0.00 0.00 0.00 5.73
82 83 1.722011 AGCACGACTAACAATTCCGG 58.278 50.000 0.00 0.00 0.00 5.14
83 84 2.478894 ACAAGCACGACTAACAATTCCG 59.521 45.455 0.00 0.00 0.00 4.30
84 85 5.600908 TTACAAGCACGACTAACAATTCC 57.399 39.130 0.00 0.00 0.00 3.01
85 86 6.827641 TGATTACAAGCACGACTAACAATTC 58.172 36.000 0.00 0.00 0.00 2.17
86 87 6.795098 TGATTACAAGCACGACTAACAATT 57.205 33.333 0.00 0.00 0.00 2.32
87 88 6.795098 TTGATTACAAGCACGACTAACAAT 57.205 33.333 0.00 0.00 0.00 2.71
88 89 6.223138 CTTGATTACAAGCACGACTAACAA 57.777 37.500 0.00 0.00 45.19 2.83
89 90 5.839262 CTTGATTACAAGCACGACTAACA 57.161 39.130 0.00 0.00 45.19 2.41
101 102 7.724305 AGACGAAAACTAAGCTTGATTACAA 57.276 32.000 9.86 0.00 34.65 2.41
102 103 7.439955 TCAAGACGAAAACTAAGCTTGATTACA 59.560 33.333 9.86 0.00 37.43 2.41
105 106 6.861065 TCAAGACGAAAACTAAGCTTGATT 57.139 33.333 9.86 0.00 37.43 2.57
106 107 6.861065 TTCAAGACGAAAACTAAGCTTGAT 57.139 33.333 9.86 0.00 40.67 2.57
107 108 6.861065 ATTCAAGACGAAAACTAAGCTTGA 57.139 33.333 9.86 0.00 39.70 3.02
108 109 8.018677 TCTATTCAAGACGAAAACTAAGCTTG 57.981 34.615 9.86 1.57 37.12 4.01
110 111 7.379750 ACTCTATTCAAGACGAAAACTAAGCT 58.620 34.615 0.00 0.00 37.12 3.74
112 113 8.648968 GGAACTCTATTCAAGACGAAAACTAAG 58.351 37.037 0.00 0.00 37.12 2.18
113 114 7.601508 GGGAACTCTATTCAAGACGAAAACTAA 59.398 37.037 0.00 0.00 37.12 2.24
114 115 7.095270 GGGAACTCTATTCAAGACGAAAACTA 58.905 38.462 0.00 0.00 37.12 2.24
115 116 5.932883 GGGAACTCTATTCAAGACGAAAACT 59.067 40.000 0.00 0.00 37.12 2.66
117 118 5.699458 GTGGGAACTCTATTCAAGACGAAAA 59.301 40.000 0.00 0.00 37.12 2.29
119 120 4.322499 GGTGGGAACTCTATTCAAGACGAA 60.322 45.833 0.00 0.00 38.22 3.85
120 121 3.194968 GGTGGGAACTCTATTCAAGACGA 59.805 47.826 0.00 0.00 0.00 4.20
121 122 3.522553 GGTGGGAACTCTATTCAAGACG 58.477 50.000 0.00 0.00 0.00 4.18
123 124 2.844348 GGGGTGGGAACTCTATTCAAGA 59.156 50.000 0.00 0.00 0.00 3.02
124 125 2.092375 GGGGGTGGGAACTCTATTCAAG 60.092 54.545 0.00 0.00 0.00 3.02
125 126 1.920351 GGGGGTGGGAACTCTATTCAA 59.080 52.381 0.00 0.00 0.00 2.69
126 127 1.082194 AGGGGGTGGGAACTCTATTCA 59.918 52.381 0.00 0.00 0.00 2.57
128 129 1.082194 TGAGGGGGTGGGAACTCTATT 59.918 52.381 0.00 0.00 0.00 1.73
129 130 0.722676 TGAGGGGGTGGGAACTCTAT 59.277 55.000 0.00 0.00 0.00 1.98
130 131 0.722676 ATGAGGGGGTGGGAACTCTA 59.277 55.000 0.00 0.00 0.00 2.43
132 133 1.421646 CATATGAGGGGGTGGGAACTC 59.578 57.143 0.00 0.00 0.00 3.01
133 134 1.275002 ACATATGAGGGGGTGGGAACT 60.275 52.381 10.38 0.00 0.00 3.01
135 136 2.293924 TGTACATATGAGGGGGTGGGAA 60.294 50.000 10.38 0.00 0.00 3.97
136 137 1.295600 TGTACATATGAGGGGGTGGGA 59.704 52.381 10.38 0.00 0.00 4.37
137 138 1.814429 TGTACATATGAGGGGGTGGG 58.186 55.000 10.38 0.00 0.00 4.61
138 139 3.519510 CCTATGTACATATGAGGGGGTGG 59.480 52.174 15.81 6.80 0.00 4.61
139 140 4.425772 TCCTATGTACATATGAGGGGGTG 58.574 47.826 18.88 5.08 0.00 4.61
140 141 4.777877 TCCTATGTACATATGAGGGGGT 57.222 45.455 18.88 0.00 0.00 4.95
141 142 5.726308 TCAATCCTATGTACATATGAGGGGG 59.274 44.000 20.82 15.27 0.00 5.40
142 143 6.874278 TCAATCCTATGTACATATGAGGGG 57.126 41.667 20.82 15.84 0.00 4.79
143 144 8.082672 TCATCAATCCTATGTACATATGAGGG 57.917 38.462 20.82 16.13 0.00 4.30
144 145 9.948964 TTTCATCAATCCTATGTACATATGAGG 57.051 33.333 20.82 18.84 0.00 3.86
151 152 9.898152 TGTACATTTTCATCAATCCTATGTACA 57.102 29.630 16.68 16.68 46.90 2.90
154 155 8.355169 GCATGTACATTTTCATCAATCCTATGT 58.645 33.333 5.37 0.00 0.00 2.29
156 157 8.701908 AGCATGTACATTTTCATCAATCCTAT 57.298 30.769 5.37 0.00 0.00 2.57
158 159 7.414222 AAGCATGTACATTTTCATCAATCCT 57.586 32.000 5.37 0.00 0.00 3.24
174 175 9.347934 CCGTGAATGTTTAAAAATAAGCATGTA 57.652 29.630 0.00 0.00 32.49 2.29
175 176 7.330700 CCCGTGAATGTTTAAAAATAAGCATGT 59.669 33.333 0.00 0.00 32.49 3.21
177 178 7.382898 ACCCGTGAATGTTTAAAAATAAGCAT 58.617 30.769 0.00 0.00 33.31 3.79
178 179 6.750148 ACCCGTGAATGTTTAAAAATAAGCA 58.250 32.000 0.00 0.00 0.00 3.91
179 180 7.646446 AACCCGTGAATGTTTAAAAATAAGC 57.354 32.000 0.00 0.00 0.00 3.09
180 181 9.250624 TCAAACCCGTGAATGTTTAAAAATAAG 57.749 29.630 0.00 0.00 33.57 1.73
181 182 9.250624 CTCAAACCCGTGAATGTTTAAAAATAA 57.749 29.630 0.00 0.00 33.57 1.40
182 183 8.630917 TCTCAAACCCGTGAATGTTTAAAAATA 58.369 29.630 0.00 0.00 33.57 1.40
183 184 7.493367 TCTCAAACCCGTGAATGTTTAAAAAT 58.507 30.769 0.00 0.00 33.57 1.82
184 185 6.864342 TCTCAAACCCGTGAATGTTTAAAAA 58.136 32.000 0.00 0.00 33.57 1.94
185 186 6.452494 TCTCAAACCCGTGAATGTTTAAAA 57.548 33.333 0.00 0.00 33.57 1.52
186 187 6.452494 TTCTCAAACCCGTGAATGTTTAAA 57.548 33.333 0.00 0.00 33.57 1.52
187 188 6.452494 TTTCTCAAACCCGTGAATGTTTAA 57.548 33.333 0.00 0.00 33.57 1.52
188 189 6.452494 TTTTCTCAAACCCGTGAATGTTTA 57.548 33.333 0.00 0.00 33.57 2.01
190 191 4.993029 TTTTCTCAAACCCGTGAATGTT 57.007 36.364 0.00 0.00 0.00 2.71
192 193 9.801873 ATTAATATTTTCTCAAACCCGTGAATG 57.198 29.630 0.00 0.00 0.00 2.67
263 264 9.893305 CTCTAATTTTACGATTTTCAGTTGGTT 57.107 29.630 0.00 0.00 0.00 3.67
264 265 9.280174 TCTCTAATTTTACGATTTTCAGTTGGT 57.720 29.630 0.00 0.00 0.00 3.67
265 266 9.543018 GTCTCTAATTTTACGATTTTCAGTTGG 57.457 33.333 0.00 0.00 0.00 3.77
269 270 9.676899 CGAAGTCTCTAATTTTACGATTTTCAG 57.323 33.333 0.00 0.00 0.00 3.02
271 272 9.888637 CTCGAAGTCTCTAATTTTACGATTTTC 57.111 33.333 0.00 0.00 0.00 2.29
272 273 9.635520 TCTCGAAGTCTCTAATTTTACGATTTT 57.364 29.630 0.00 0.00 0.00 1.82
274 275 9.635520 TTTCTCGAAGTCTCTAATTTTACGATT 57.364 29.630 0.00 0.00 0.00 3.34
276 277 9.467258 TTTTTCTCGAAGTCTCTAATTTTACGA 57.533 29.630 0.00 0.00 0.00 3.43
300 301 4.081198 TCCCTGCAGTTGTCAATTGTTTTT 60.081 37.500 13.81 0.00 0.00 1.94
301 302 3.450457 TCCCTGCAGTTGTCAATTGTTTT 59.550 39.130 13.81 0.00 0.00 2.43
302 303 3.030291 TCCCTGCAGTTGTCAATTGTTT 58.970 40.909 13.81 0.00 0.00 2.83
304 305 2.233271 CTCCCTGCAGTTGTCAATTGT 58.767 47.619 13.81 0.00 0.00 2.71
305 306 1.068055 GCTCCCTGCAGTTGTCAATTG 60.068 52.381 13.81 0.00 42.31 2.32
306 307 1.251251 GCTCCCTGCAGTTGTCAATT 58.749 50.000 13.81 0.00 42.31 2.32
308 309 1.228245 GGCTCCCTGCAGTTGTCAA 60.228 57.895 13.81 0.00 45.15 3.18
309 310 2.431683 GGCTCCCTGCAGTTGTCA 59.568 61.111 13.81 0.00 45.15 3.58
310 311 2.527951 ATCGGCTCCCTGCAGTTGTC 62.528 60.000 13.81 2.68 45.15 3.18
311 312 2.596851 ATCGGCTCCCTGCAGTTGT 61.597 57.895 13.81 0.00 45.15 3.32
313 314 1.841302 TTCATCGGCTCCCTGCAGTT 61.841 55.000 13.81 0.00 45.15 3.16
314 315 1.841302 TTTCATCGGCTCCCTGCAGT 61.841 55.000 13.81 0.00 45.15 4.40
316 317 1.078214 CTTTCATCGGCTCCCTGCA 60.078 57.895 0.00 0.00 45.15 4.41
317 318 1.092345 GTCTTTCATCGGCTCCCTGC 61.092 60.000 0.00 0.00 41.94 4.85
318 319 0.250234 TGTCTTTCATCGGCTCCCTG 59.750 55.000 0.00 0.00 0.00 4.45
319 320 0.984230 TTGTCTTTCATCGGCTCCCT 59.016 50.000 0.00 0.00 0.00 4.20
320 321 1.821216 TTTGTCTTTCATCGGCTCCC 58.179 50.000 0.00 0.00 0.00 4.30
322 323 2.098117 CCCATTTGTCTTTCATCGGCTC 59.902 50.000 0.00 0.00 0.00 4.70
323 324 2.094675 CCCATTTGTCTTTCATCGGCT 58.905 47.619 0.00 0.00 0.00 5.52
324 325 1.469767 GCCCATTTGTCTTTCATCGGC 60.470 52.381 0.00 0.00 0.00 5.54
325 326 1.134946 GGCCCATTTGTCTTTCATCGG 59.865 52.381 0.00 0.00 0.00 4.18
326 327 1.202177 CGGCCCATTTGTCTTTCATCG 60.202 52.381 0.00 0.00 0.00 3.84
327 328 1.134946 CCGGCCCATTTGTCTTTCATC 59.865 52.381 0.00 0.00 0.00 2.92
329 330 1.531739 GCCGGCCCATTTGTCTTTCA 61.532 55.000 18.11 0.00 0.00 2.69
331 332 2.282783 GGCCGGCCCATTTGTCTTT 61.283 57.895 36.64 0.00 0.00 2.52
332 333 2.679996 GGCCGGCCCATTTGTCTT 60.680 61.111 36.64 0.00 0.00 3.01
343 344 3.749981 CTCACAATATGGGCCGGC 58.250 61.111 21.18 21.18 0.00 6.13
348 349 0.664761 CCAAGCGCTCACAATATGGG 59.335 55.000 12.06 0.00 0.00 4.00
349 350 1.331756 GTCCAAGCGCTCACAATATGG 59.668 52.381 12.06 13.61 0.00 2.74
350 351 2.009051 TGTCCAAGCGCTCACAATATG 58.991 47.619 12.06 2.55 0.00 1.78
351 352 2.401583 TGTCCAAGCGCTCACAATAT 57.598 45.000 12.06 0.00 0.00 1.28
352 353 1.804151 GTTGTCCAAGCGCTCACAATA 59.196 47.619 24.19 8.10 31.65 1.90
354 355 1.771073 CGTTGTCCAAGCGCTCACAA 61.771 55.000 19.96 19.96 0.00 3.33
357 358 1.005037 ATCGTTGTCCAAGCGCTCA 60.005 52.632 12.06 0.00 0.00 4.26
358 359 1.696832 GGATCGTTGTCCAAGCGCTC 61.697 60.000 12.06 0.00 38.20 5.03
359 360 1.741770 GGATCGTTGTCCAAGCGCT 60.742 57.895 2.64 2.64 38.20 5.92
360 361 2.032634 TGGATCGTTGTCCAAGCGC 61.033 57.895 0.00 0.00 45.03 5.92
361 362 4.277239 TGGATCGTTGTCCAAGCG 57.723 55.556 4.82 0.00 45.03 4.68
366 367 3.118738 ACAAGTCCTATGGATCGTTGTCC 60.119 47.826 0.00 0.00 31.76 4.02
367 368 4.113354 GACAAGTCCTATGGATCGTTGTC 58.887 47.826 16.37 16.37 39.81 3.18
391 392 2.945008 CTCGGATGCAGCCAAATTTCTA 59.055 45.455 22.95 0.00 0.00 2.10
409 410 3.848347 ATACATCGCCGGCAGCTCG 62.848 63.158 28.98 9.94 40.39 5.03
411 412 2.280389 CATACATCGCCGGCAGCT 60.280 61.111 28.98 6.95 40.39 4.24
623 2986 2.433664 GTCTACGTGGCCCCGTTG 60.434 66.667 20.83 17.75 42.00 4.10
927 3292 1.182667 CACCTCATCTCCGGTGTGTA 58.817 55.000 0.00 0.00 44.38 2.90
934 3299 4.002982 CTCTCTATCTCACCTCATCTCCG 58.997 52.174 0.00 0.00 0.00 4.63
944 3309 7.051623 TCTCTGAACTAACCTCTCTATCTCAC 58.948 42.308 0.00 0.00 0.00 3.51
1120 3489 1.871039 GCAGAACGTACCAGCTTTCAA 59.129 47.619 0.00 0.00 0.00 2.69
1147 3518 1.407979 CAAGCTAGGGGTTACGATCGT 59.592 52.381 25.94 25.94 0.00 3.73
1151 3522 2.530460 TACCAAGCTAGGGGTTACGA 57.470 50.000 9.61 0.00 38.60 3.43
1157 3532 3.518303 ACTACTGTTTACCAAGCTAGGGG 59.482 47.826 9.01 3.61 0.00 4.79
1179 3555 4.712829 TCCATTGTCTAGAACGGAATGGTA 59.287 41.667 21.85 12.91 40.16 3.25
1187 3563 3.238108 AGCACTCCATTGTCTAGAACG 57.762 47.619 0.00 0.00 0.00 3.95
1212 3588 2.794981 CGTCACTCACTCACGTTCAACT 60.795 50.000 0.00 0.00 0.00 3.16
1213 3589 1.517276 CGTCACTCACTCACGTTCAAC 59.483 52.381 0.00 0.00 0.00 3.18
1214 3590 1.835121 CGTCACTCACTCACGTTCAA 58.165 50.000 0.00 0.00 0.00 2.69
1926 4428 1.373246 GCCAACCTACGTACACGCA 60.373 57.895 0.85 0.00 44.43 5.24
1927 4429 0.668401 AAGCCAACCTACGTACACGC 60.668 55.000 0.85 0.00 44.43 5.34
1928 4430 1.343506 GAAGCCAACCTACGTACACG 58.656 55.000 0.00 0.00 46.33 4.49
1929 4431 1.336240 ACGAAGCCAACCTACGTACAC 60.336 52.381 0.00 0.00 35.49 2.90
1967 4472 3.027412 AGTCCATCACAGGTAGCTACTG 58.973 50.000 22.74 19.30 41.64 2.74
1985 4492 8.220755 AGAGAGTGTGAGTATGATTAGAAGTC 57.779 38.462 0.00 0.00 0.00 3.01
2121 4629 7.780745 TCCTACAACTTTCCTATGAACCAAAAA 59.219 33.333 0.00 0.00 0.00 1.94
2122 4630 7.291566 TCCTACAACTTTCCTATGAACCAAAA 58.708 34.615 0.00 0.00 0.00 2.44
2123 4631 6.843752 TCCTACAACTTTCCTATGAACCAAA 58.156 36.000 0.00 0.00 0.00 3.28
2124 4632 6.442541 TCCTACAACTTTCCTATGAACCAA 57.557 37.500 0.00 0.00 0.00 3.67
2125 4633 6.442541 TTCCTACAACTTTCCTATGAACCA 57.557 37.500 0.00 0.00 0.00 3.67
2126 4634 7.628580 GCAATTCCTACAACTTTCCTATGAACC 60.629 40.741 0.00 0.00 0.00 3.62
2127 4635 7.094377 TGCAATTCCTACAACTTTCCTATGAAC 60.094 37.037 0.00 0.00 0.00 3.18
2128 4636 6.945435 TGCAATTCCTACAACTTTCCTATGAA 59.055 34.615 0.00 0.00 0.00 2.57
2129 4637 6.480763 TGCAATTCCTACAACTTTCCTATGA 58.519 36.000 0.00 0.00 0.00 2.15
2130 4638 6.757897 TGCAATTCCTACAACTTTCCTATG 57.242 37.500 0.00 0.00 0.00 2.23
2131 4639 7.669722 TCTTTGCAATTCCTACAACTTTCCTAT 59.330 33.333 0.00 0.00 0.00 2.57
2132 4640 7.001674 TCTTTGCAATTCCTACAACTTTCCTA 58.998 34.615 0.00 0.00 0.00 2.94
2133 4641 5.833131 TCTTTGCAATTCCTACAACTTTCCT 59.167 36.000 0.00 0.00 0.00 3.36
2134 4642 6.084326 TCTTTGCAATTCCTACAACTTTCC 57.916 37.500 0.00 0.00 0.00 3.13
2135 4643 9.691362 TTATTCTTTGCAATTCCTACAACTTTC 57.309 29.630 0.00 0.00 0.00 2.62
2172 4680 9.962289 ACCAAAGGGCTTCAAAGGAATTTTTCC 62.962 40.741 0.00 0.00 44.02 3.13
2173 4681 5.239306 CCAAAGGGCTTCAAAGGAATTTTTC 59.761 40.000 0.00 0.00 31.34 2.29
2174 4682 5.132502 CCAAAGGGCTTCAAAGGAATTTTT 58.867 37.500 0.00 0.00 31.34 1.94
2175 4683 4.165950 ACCAAAGGGCTTCAAAGGAATTTT 59.834 37.500 0.00 0.00 37.90 1.82
2176 4684 3.716353 ACCAAAGGGCTTCAAAGGAATTT 59.284 39.130 0.00 0.00 37.90 1.82
2177 4685 3.317406 ACCAAAGGGCTTCAAAGGAATT 58.683 40.909 0.00 0.00 37.90 2.17
2178 4686 2.976440 ACCAAAGGGCTTCAAAGGAAT 58.024 42.857 0.00 0.00 37.90 3.01
2179 4687 2.470057 ACCAAAGGGCTTCAAAGGAA 57.530 45.000 0.00 0.00 37.90 3.36
2180 4688 2.433970 CAAACCAAAGGGCTTCAAAGGA 59.566 45.455 0.00 0.00 37.90 3.36
2181 4689 2.170397 ACAAACCAAAGGGCTTCAAAGG 59.830 45.455 0.00 0.00 37.90 3.11
2182 4690 3.541996 ACAAACCAAAGGGCTTCAAAG 57.458 42.857 0.00 0.00 37.90 2.77
2183 4691 3.386402 CCTACAAACCAAAGGGCTTCAAA 59.614 43.478 0.00 0.00 37.90 2.69
2184 4692 2.962421 CCTACAAACCAAAGGGCTTCAA 59.038 45.455 0.00 0.00 37.90 2.69
2185 4693 2.175931 TCCTACAAACCAAAGGGCTTCA 59.824 45.455 0.00 0.00 37.90 3.02
2186 4694 2.871453 TCCTACAAACCAAAGGGCTTC 58.129 47.619 0.00 0.00 37.90 3.86
2187 4695 3.322191 TTCCTACAAACCAAAGGGCTT 57.678 42.857 0.00 0.00 37.90 4.35
2188 4696 3.165071 CATTCCTACAAACCAAAGGGCT 58.835 45.455 0.00 0.00 37.90 5.19
2189 4697 3.161866 TCATTCCTACAAACCAAAGGGC 58.838 45.455 0.00 0.00 37.90 5.19
2190 4698 4.407365 ACTCATTCCTACAAACCAAAGGG 58.593 43.478 0.00 0.00 41.29 3.95
2191 4699 6.013842 GAACTCATTCCTACAAACCAAAGG 57.986 41.667 0.00 0.00 0.00 3.11
2232 4740 9.933723 CCTTTGAAATGTGAAGGATTAATTCTT 57.066 29.630 8.84 8.84 41.97 2.52
2233 4741 9.312904 TCCTTTGAAATGTGAAGGATTAATTCT 57.687 29.630 0.15 0.00 42.90 2.40
2234 4742 9.927668 TTCCTTTGAAATGTGAAGGATTAATTC 57.072 29.630 5.03 0.00 45.99 2.17
2261 4769 6.825610 TCATTGAGTTTAGGCCAATGTTTTT 58.174 32.000 5.01 0.00 44.34 1.94
2262 4770 6.418057 TCATTGAGTTTAGGCCAATGTTTT 57.582 33.333 5.01 0.00 44.34 2.43
2263 4771 6.418057 TTCATTGAGTTTAGGCCAATGTTT 57.582 33.333 5.01 0.00 44.34 2.83
2264 4772 6.418057 TTTCATTGAGTTTAGGCCAATGTT 57.582 33.333 5.01 0.00 44.34 2.71
2265 4773 6.418057 TTTTCATTGAGTTTAGGCCAATGT 57.582 33.333 5.01 0.00 44.34 2.71
2266 4774 7.910441 AATTTTCATTGAGTTTAGGCCAATG 57.090 32.000 5.01 4.27 44.97 2.82
2267 4775 8.922931 AAAATTTTCATTGAGTTTAGGCCAAT 57.077 26.923 5.01 0.00 0.00 3.16
2268 4776 8.744568 AAAAATTTTCATTGAGTTTAGGCCAA 57.255 26.923 5.01 0.00 0.00 4.52
2269 4777 8.210265 AGAAAAATTTTCATTGAGTTTAGGCCA 58.790 29.630 19.16 0.00 0.00 5.36
2270 4778 8.607441 AGAAAAATTTTCATTGAGTTTAGGCC 57.393 30.769 19.16 0.00 0.00 5.19
2321 4829 9.881649 GACATGCATCTCAAATCCTATAGAATA 57.118 33.333 0.00 0.00 0.00 1.75
2322 4830 8.380867 TGACATGCATCTCAAATCCTATAGAAT 58.619 33.333 1.73 0.00 0.00 2.40
2323 4831 7.738847 TGACATGCATCTCAAATCCTATAGAA 58.261 34.615 1.73 0.00 0.00 2.10
2324 4832 7.307131 TGACATGCATCTCAAATCCTATAGA 57.693 36.000 1.73 0.00 0.00 1.98
2339 4847 6.589135 TCATAGAAAGTGAGATGACATGCAT 58.411 36.000 0.00 0.00 40.77 3.96
2340 4848 5.981174 TCATAGAAAGTGAGATGACATGCA 58.019 37.500 0.00 0.00 0.00 3.96
2341 4849 7.493743 AATCATAGAAAGTGAGATGACATGC 57.506 36.000 0.00 0.00 31.41 4.06
2344 4852 9.730705 AGAAAAATCATAGAAAGTGAGATGACA 57.269 29.630 0.00 0.00 31.41 3.58
2380 4888 9.595823 CTTCTTTGGTTCGTAGGATAGAAATAA 57.404 33.333 0.00 0.00 0.00 1.40
2381 4889 8.974238 TCTTCTTTGGTTCGTAGGATAGAAATA 58.026 33.333 0.00 0.00 0.00 1.40
2382 4890 7.764901 GTCTTCTTTGGTTCGTAGGATAGAAAT 59.235 37.037 0.00 0.00 0.00 2.17
2383 4891 7.095270 GTCTTCTTTGGTTCGTAGGATAGAAA 58.905 38.462 0.00 0.00 0.00 2.52
2384 4892 6.350780 GGTCTTCTTTGGTTCGTAGGATAGAA 60.351 42.308 0.00 0.00 0.00 2.10
2385 4893 5.126707 GGTCTTCTTTGGTTCGTAGGATAGA 59.873 44.000 0.00 0.00 0.00 1.98
2386 4894 5.127356 AGGTCTTCTTTGGTTCGTAGGATAG 59.873 44.000 0.00 0.00 0.00 2.08
2387 4895 5.021458 AGGTCTTCTTTGGTTCGTAGGATA 58.979 41.667 0.00 0.00 0.00 2.59
2388 4896 3.838903 AGGTCTTCTTTGGTTCGTAGGAT 59.161 43.478 0.00 0.00 0.00 3.24
2389 4897 3.236896 AGGTCTTCTTTGGTTCGTAGGA 58.763 45.455 0.00 0.00 0.00 2.94
2390 4898 3.679824 AGGTCTTCTTTGGTTCGTAGG 57.320 47.619 0.00 0.00 0.00 3.18
2391 4899 5.780984 ACTTAGGTCTTCTTTGGTTCGTAG 58.219 41.667 0.00 0.00 0.00 3.51
2392 4900 5.796424 ACTTAGGTCTTCTTTGGTTCGTA 57.204 39.130 0.00 0.00 0.00 3.43
2393 4901 4.684484 ACTTAGGTCTTCTTTGGTTCGT 57.316 40.909 0.00 0.00 0.00 3.85
2394 4902 7.545489 AGTATACTTAGGTCTTCTTTGGTTCG 58.455 38.462 0.00 0.00 0.00 3.95
2395 4903 9.368674 GAAGTATACTTAGGTCTTCTTTGGTTC 57.631 37.037 18.03 0.00 36.11 3.62
2396 4904 8.877195 TGAAGTATACTTAGGTCTTCTTTGGTT 58.123 33.333 18.03 0.00 36.11 3.67
2397 4905 8.431910 TGAAGTATACTTAGGTCTTCTTTGGT 57.568 34.615 18.03 0.00 36.11 3.67
2398 4906 9.152595 GTTGAAGTATACTTAGGTCTTCTTTGG 57.847 37.037 18.03 0.00 36.11 3.28
2399 4907 9.706691 TGTTGAAGTATACTTAGGTCTTCTTTG 57.293 33.333 18.03 0.00 36.11 2.77
2401 4909 9.877178 CATGTTGAAGTATACTTAGGTCTTCTT 57.123 33.333 18.03 0.00 36.11 2.52
2402 4910 9.256228 TCATGTTGAAGTATACTTAGGTCTTCT 57.744 33.333 18.03 0.00 36.11 2.85
2403 4911 9.303537 GTCATGTTGAAGTATACTTAGGTCTTC 57.696 37.037 18.03 4.94 36.11 2.87
2404 4912 9.036980 AGTCATGTTGAAGTATACTTAGGTCTT 57.963 33.333 18.03 5.45 36.11 3.01
2405 4913 8.596781 AGTCATGTTGAAGTATACTTAGGTCT 57.403 34.615 18.03 5.15 36.11 3.85
2453 4963 5.819991 AGAAAAAGAGGTTGGCAGATATCA 58.180 37.500 5.32 0.00 0.00 2.15
2481 4991 0.473117 TACCCCCACTATGGCTAGCC 60.473 60.000 27.71 27.71 35.79 3.93
2482 4992 1.071857 GTTACCCCCACTATGGCTAGC 59.928 57.143 6.04 6.04 35.79 3.42
2483 4993 2.690840 AGTTACCCCCACTATGGCTAG 58.309 52.381 0.00 0.00 35.79 3.42
2484 4994 2.881266 AGTTACCCCCACTATGGCTA 57.119 50.000 0.00 0.00 35.79 3.93
2485 4995 1.981259 AAGTTACCCCCACTATGGCT 58.019 50.000 0.00 0.00 35.79 4.75
2486 4996 2.105993 CCTAAGTTACCCCCACTATGGC 59.894 54.545 0.00 0.00 35.79 4.40
2487 4997 3.390819 ACCTAAGTTACCCCCACTATGG 58.609 50.000 0.00 0.00 37.25 2.74
2488 4998 5.214293 ACTACCTAAGTTACCCCCACTATG 58.786 45.833 0.00 0.00 33.35 2.23
2489 4999 5.494136 ACTACCTAAGTTACCCCCACTAT 57.506 43.478 0.00 0.00 33.35 2.12
2490 5000 4.972999 ACTACCTAAGTTACCCCCACTA 57.027 45.455 0.00 0.00 33.35 2.74
2491 5001 3.860647 ACTACCTAAGTTACCCCCACT 57.139 47.619 0.00 0.00 33.35 4.00
2495 5853 8.035394 GTGTTAAGTTACTACCTAAGTTACCCC 58.965 40.741 0.00 0.00 38.28 4.95
2498 5856 9.411801 GGTGTGTTAAGTTACTACCTAAGTTAC 57.588 37.037 0.00 0.00 39.80 2.50
2499 5857 8.585018 GGGTGTGTTAAGTTACTACCTAAGTTA 58.415 37.037 0.57 0.00 39.80 2.24
2501 5859 6.784473 AGGGTGTGTTAAGTTACTACCTAAGT 59.216 38.462 0.57 0.00 42.62 2.24
2502 5860 7.237209 AGGGTGTGTTAAGTTACTACCTAAG 57.763 40.000 0.57 0.00 0.00 2.18
2507 5865 7.661040 TGTCTTAGGGTGTGTTAAGTTACTAC 58.339 38.462 0.00 0.00 0.00 2.73
2509 5867 6.736110 TGTCTTAGGGTGTGTTAAGTTACT 57.264 37.500 0.00 0.00 0.00 2.24
2510 5868 7.974482 ATTGTCTTAGGGTGTGTTAAGTTAC 57.026 36.000 0.00 0.00 0.00 2.50
2512 5870 7.891498 AAATTGTCTTAGGGTGTGTTAAGTT 57.109 32.000 0.00 0.00 0.00 2.66
2516 5874 7.648039 AACAAAATTGTCTTAGGGTGTGTTA 57.352 32.000 0.00 0.00 41.31 2.41
2519 5877 8.141268 ACATAAACAAAATTGTCTTAGGGTGTG 58.859 33.333 0.00 0.57 41.31 3.82
2520 5878 8.141268 CACATAAACAAAATTGTCTTAGGGTGT 58.859 33.333 0.00 1.59 41.31 4.16
2521 5879 7.598493 CCACATAAACAAAATTGTCTTAGGGTG 59.402 37.037 0.00 11.28 41.31 4.61
2522 5880 7.666623 CCACATAAACAAAATTGTCTTAGGGT 58.333 34.615 0.00 2.54 41.31 4.34
2523 5881 6.589907 GCCACATAAACAAAATTGTCTTAGGG 59.410 38.462 0.00 0.02 41.31 3.53
2524 5882 7.151308 TGCCACATAAACAAAATTGTCTTAGG 58.849 34.615 0.00 5.61 41.31 2.69
2543 5901 7.857456 TCTCTCCTTATTAAATACTTGCCACA 58.143 34.615 0.00 0.00 0.00 4.17
2544 5902 7.442666 CCTCTCTCCTTATTAAATACTTGCCAC 59.557 40.741 0.00 0.00 0.00 5.01
2545 5903 7.127339 ACCTCTCTCCTTATTAAATACTTGCCA 59.873 37.037 0.00 0.00 0.00 4.92
2546 5904 7.442666 CACCTCTCTCCTTATTAAATACTTGCC 59.557 40.741 0.00 0.00 0.00 4.52
2548 5906 8.207545 AGCACCTCTCTCCTTATTAAATACTTG 58.792 37.037 0.00 0.00 0.00 3.16
2550 5908 7.922699 AGCACCTCTCTCCTTATTAAATACT 57.077 36.000 0.00 0.00 0.00 2.12
2551 5909 7.442666 CCAAGCACCTCTCTCCTTATTAAATAC 59.557 40.741 0.00 0.00 0.00 1.89
2552 5910 7.347222 TCCAAGCACCTCTCTCCTTATTAAATA 59.653 37.037 0.00 0.00 0.00 1.40
2553 5911 6.158695 TCCAAGCACCTCTCTCCTTATTAAAT 59.841 38.462 0.00 0.00 0.00 1.40
2554 5912 5.487488 TCCAAGCACCTCTCTCCTTATTAAA 59.513 40.000 0.00 0.00 0.00 1.52
2555 5913 5.030147 TCCAAGCACCTCTCTCCTTATTAA 58.970 41.667 0.00 0.00 0.00 1.40
2556 5914 4.620723 TCCAAGCACCTCTCTCCTTATTA 58.379 43.478 0.00 0.00 0.00 0.98
2557 5915 3.454082 CTCCAAGCACCTCTCTCCTTATT 59.546 47.826 0.00 0.00 0.00 1.40
2559 5917 2.225394 ACTCCAAGCACCTCTCTCCTTA 60.225 50.000 0.00 0.00 0.00 2.69
2560 5918 1.274712 CTCCAAGCACCTCTCTCCTT 58.725 55.000 0.00 0.00 0.00 3.36
2562 5920 1.853963 TACTCCAAGCACCTCTCTCC 58.146 55.000 0.00 0.00 0.00 3.71
2563 5921 2.829120 AGTTACTCCAAGCACCTCTCTC 59.171 50.000 0.00 0.00 0.00 3.20
2564 5922 2.896039 AGTTACTCCAAGCACCTCTCT 58.104 47.619 0.00 0.00 0.00 3.10
2565 5923 3.686916 AAGTTACTCCAAGCACCTCTC 57.313 47.619 0.00 0.00 0.00 3.20
2566 5924 4.262938 GGTAAAGTTACTCCAAGCACCTCT 60.263 45.833 1.48 0.00 34.16 3.69
2568 5926 3.393278 TGGTAAAGTTACTCCAAGCACCT 59.607 43.478 1.48 0.00 34.16 4.00
2569 5927 3.746940 TGGTAAAGTTACTCCAAGCACC 58.253 45.455 1.48 0.00 34.16 5.01
2570 5928 5.353400 GGTATGGTAAAGTTACTCCAAGCAC 59.647 44.000 1.48 0.00 34.16 4.40
2571 5929 5.013287 TGGTATGGTAAAGTTACTCCAAGCA 59.987 40.000 1.48 0.00 34.16 3.91
2572 5930 5.493809 TGGTATGGTAAAGTTACTCCAAGC 58.506 41.667 1.48 0.00 34.16 4.01
2573 5931 7.360607 CGTTTGGTATGGTAAAGTTACTCCAAG 60.361 40.741 1.48 0.00 34.91 3.61
2574 5932 6.427547 CGTTTGGTATGGTAAAGTTACTCCAA 59.572 38.462 1.48 8.18 33.47 3.53
2575 5933 5.933463 CGTTTGGTATGGTAAAGTTACTCCA 59.067 40.000 1.48 0.00 34.16 3.86
2576 5934 5.352293 CCGTTTGGTATGGTAAAGTTACTCC 59.648 44.000 1.48 0.00 34.16 3.85
2577 5935 5.352293 CCCGTTTGGTATGGTAAAGTTACTC 59.648 44.000 1.48 0.00 34.16 2.59
2578 5936 5.247862 CCCGTTTGGTATGGTAAAGTTACT 58.752 41.667 1.48 0.00 34.16 2.24
2817 6523 0.234884 GTGTCTCGGTTTGCTTTCGG 59.765 55.000 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.