Multiple sequence alignment - TraesCS5A01G495300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G495300 chr5A 100.000 3743 0 0 1 3743 663371479 663375221 0.000000e+00 6913.0
1 TraesCS5A01G495300 chr4B 93.296 3237 134 37 268 3442 613910019 613906804 0.000000e+00 4698.0
2 TraesCS5A01G495300 chr4B 97.468 79 0 1 3549 3627 613906693 613906617 2.350000e-27 134.0
3 TraesCS5A01G495300 chr4B 93.056 72 4 1 3429 3499 613906780 613906709 1.840000e-18 104.0
4 TraesCS5A01G495300 chr4B 95.556 45 2 0 3493 3537 385037057 385037013 5.190000e-09 73.1
5 TraesCS5A01G495300 chr4B 93.617 47 2 1 3492 3537 623124130 623124084 6.710000e-08 69.4
6 TraesCS5A01G495300 chr4D 94.073 1586 61 17 551 2106 483176065 483177647 0.000000e+00 2377.0
7 TraesCS5A01G495300 chr4D 89.033 848 62 21 2156 2984 483177642 483178477 0.000000e+00 1022.0
8 TraesCS5A01G495300 chr4D 91.797 256 9 6 1 256 349002719 349002962 2.770000e-91 346.0
9 TraesCS5A01G495300 chr4D 88.542 288 20 8 268 546 483175518 483175801 1.670000e-88 337.0
10 TraesCS5A01G495300 chr1B 78.168 1310 196 52 961 2239 547165858 547167108 0.000000e+00 752.0
11 TraesCS5A01G495300 chr1B 95.111 225 9 2 1 224 529441027 529440804 1.650000e-93 353.0
12 TraesCS5A01G495300 chr1B 79.688 384 61 9 2370 2748 547167284 547167655 1.030000e-65 261.0
13 TraesCS5A01G495300 chr1B 75.080 622 113 29 2107 2706 546953145 546953746 6.210000e-63 252.0
14 TraesCS5A01G495300 chr1B 74.157 623 117 31 2107 2706 546831496 546832097 6.290000e-53 219.0
15 TraesCS5A01G495300 chr1B 93.478 46 3 0 3492 3537 359907234 359907279 6.710000e-08 69.4
16 TraesCS5A01G495300 chr1A 76.551 1386 199 76 1458 2771 502499230 502500561 0.000000e+00 643.0
17 TraesCS5A01G495300 chr1A 92.308 260 12 4 1 253 492194696 492194438 2.750000e-96 363.0
18 TraesCS5A01G495300 chr1A 85.356 239 33 2 1073 1309 502498930 502499168 2.890000e-61 246.0
19 TraesCS5A01G495300 chr1A 83.243 185 18 8 31 213 44366466 44366293 1.390000e-34 158.0
20 TraesCS5A01G495300 chr1D 80.578 623 94 16 1458 2065 406819620 406820230 4.410000e-124 455.0
21 TraesCS5A01G495300 chr1D 86.667 360 43 5 953 1309 406819204 406819561 9.740000e-106 394.0
22 TraesCS5A01G495300 chr1D 75.040 621 104 32 2107 2706 406664171 406664761 1.340000e-59 241.0
23 TraesCS5A01G495300 chr2A 94.118 255 14 1 1 255 612763306 612763559 1.630000e-103 387.0
24 TraesCS5A01G495300 chr6A 88.652 141 10 6 86 223 546481185 546481048 2.310000e-37 167.0
25 TraesCS5A01G495300 chr6A 100.000 46 0 0 1378 1423 506642829 506642874 6.660000e-13 86.1
26 TraesCS5A01G495300 chr6D 86.713 143 13 6 84 223 400542767 400542628 1.800000e-33 154.0
27 TraesCS5A01G495300 chr3A 90.654 107 8 2 108 213 31731104 31731209 1.400000e-29 141.0
28 TraesCS5A01G495300 chr3D 100.000 47 0 0 1377 1423 5879372 5879418 1.850000e-13 87.9
29 TraesCS5A01G495300 chr3D 90.476 63 3 2 1371 1433 126219682 126219623 3.100000e-11 80.5
30 TraesCS5A01G495300 chr7D 100.000 46 0 0 1378 1423 496154927 496154972 6.660000e-13 86.1
31 TraesCS5A01G495300 chr5B 100.000 45 0 0 1379 1423 170586177 170586133 2.400000e-12 84.2
32 TraesCS5A01G495300 chr5B 95.556 45 2 0 3493 3537 228061836 228061880 5.190000e-09 73.1
33 TraesCS5A01G495300 chr2B 96.078 51 1 1 1373 1423 191749231 191749280 8.620000e-12 82.4
34 TraesCS5A01G495300 chr2B 95.556 45 1 1 3494 3537 151465510 151465466 1.870000e-08 71.3
35 TraesCS5A01G495300 chr2B 93.617 47 3 0 3491 3537 161416213 161416259 1.870000e-08 71.3
36 TraesCS5A01G495300 chr3B 94.340 53 2 1 1371 1423 180277644 180277593 3.100000e-11 80.5
37 TraesCS5A01G495300 chr3B 95.455 44 2 0 3494 3537 5645691 5645734 1.870000e-08 71.3
38 TraesCS5A01G495300 chr7B 95.455 44 2 0 3494 3537 3887325 3887282 1.870000e-08 71.3
39 TraesCS5A01G495300 chr2D 95.556 45 1 1 3493 3537 272263060 272263103 1.870000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G495300 chr5A 663371479 663375221 3742 False 6913.000000 6913 100.000000 1 3743 1 chr5A.!!$F1 3742
1 TraesCS5A01G495300 chr4B 613906617 613910019 3402 True 1645.333333 4698 94.606667 268 3627 3 chr4B.!!$R3 3359
2 TraesCS5A01G495300 chr4D 483175518 483178477 2959 False 1245.333333 2377 90.549333 268 2984 3 chr4D.!!$F2 2716
3 TraesCS5A01G495300 chr1B 547165858 547167655 1797 False 506.500000 752 78.928000 961 2748 2 chr1B.!!$F4 1787
4 TraesCS5A01G495300 chr1B 546953145 546953746 601 False 252.000000 252 75.080000 2107 2706 1 chr1B.!!$F3 599
5 TraesCS5A01G495300 chr1B 546831496 546832097 601 False 219.000000 219 74.157000 2107 2706 1 chr1B.!!$F2 599
6 TraesCS5A01G495300 chr1A 502498930 502500561 1631 False 444.500000 643 80.953500 1073 2771 2 chr1A.!!$F1 1698
7 TraesCS5A01G495300 chr1D 406819204 406820230 1026 False 424.500000 455 83.622500 953 2065 2 chr1D.!!$F2 1112
8 TraesCS5A01G495300 chr1D 406664171 406664761 590 False 241.000000 241 75.040000 2107 2706 1 chr1D.!!$F1 599

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
214 215 0.034670 GGGTGATTCTGCAGGAAGCT 60.035 55.0 15.13 0.0 45.94 3.74 F
1190 1488 0.033601 TGGTTGCCTGACCTTGTTGT 60.034 50.0 3.15 0.0 40.47 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1268 1568 5.266733 TCAAGAGAGCAACAAAGCAAAAT 57.733 34.783 0.0 0.0 36.85 1.82 R
2964 3437 0.108186 CTTCACAGCCAGCATACGGA 60.108 55.000 0.0 0.0 0.00 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.751060 GATTTGCTTGATTGCTGAATGGA 58.249 39.130 0.00 0.00 0.00 3.41
23 24 4.811969 TTTGCTTGATTGCTGAATGGAT 57.188 36.364 0.00 0.00 0.00 3.41
24 25 3.793797 TGCTTGATTGCTGAATGGATG 57.206 42.857 0.00 0.00 0.00 3.51
25 26 3.093814 TGCTTGATTGCTGAATGGATGT 58.906 40.909 0.00 0.00 0.00 3.06
26 27 4.271661 TGCTTGATTGCTGAATGGATGTA 58.728 39.130 0.00 0.00 0.00 2.29
27 28 4.891168 TGCTTGATTGCTGAATGGATGTAT 59.109 37.500 0.00 0.00 0.00 2.29
28 29 5.220381 GCTTGATTGCTGAATGGATGTATG 58.780 41.667 0.00 0.00 0.00 2.39
29 30 4.841443 TGATTGCTGAATGGATGTATGC 57.159 40.909 0.00 0.00 0.00 3.14
30 31 4.466827 TGATTGCTGAATGGATGTATGCT 58.533 39.130 0.00 0.00 0.00 3.79
31 32 4.517832 TGATTGCTGAATGGATGTATGCTC 59.482 41.667 0.00 0.00 0.00 4.26
32 33 2.486918 TGCTGAATGGATGTATGCTCG 58.513 47.619 0.00 0.00 0.00 5.03
33 34 2.158914 TGCTGAATGGATGTATGCTCGT 60.159 45.455 0.00 0.00 0.00 4.18
34 35 2.874701 GCTGAATGGATGTATGCTCGTT 59.125 45.455 0.00 0.00 0.00 3.85
35 36 3.313526 GCTGAATGGATGTATGCTCGTTT 59.686 43.478 0.00 0.00 0.00 3.60
36 37 4.201950 GCTGAATGGATGTATGCTCGTTTT 60.202 41.667 0.00 0.00 0.00 2.43
37 38 5.484173 TGAATGGATGTATGCTCGTTTTC 57.516 39.130 0.00 0.00 0.00 2.29
38 39 4.940654 TGAATGGATGTATGCTCGTTTTCA 59.059 37.500 0.00 0.00 0.00 2.69
39 40 5.589855 TGAATGGATGTATGCTCGTTTTCAT 59.410 36.000 0.00 0.00 0.00 2.57
40 41 4.880886 TGGATGTATGCTCGTTTTCATG 57.119 40.909 0.00 0.00 0.00 3.07
41 42 3.065233 TGGATGTATGCTCGTTTTCATGC 59.935 43.478 0.00 0.00 0.00 4.06
42 43 3.313526 GGATGTATGCTCGTTTTCATGCT 59.686 43.478 0.00 0.00 0.00 3.79
43 44 4.521943 GATGTATGCTCGTTTTCATGCTC 58.478 43.478 0.00 0.00 0.00 4.26
44 45 3.333804 TGTATGCTCGTTTTCATGCTCA 58.666 40.909 0.00 0.00 0.00 4.26
45 46 3.940852 TGTATGCTCGTTTTCATGCTCAT 59.059 39.130 0.00 0.00 0.00 2.90
46 47 5.115480 TGTATGCTCGTTTTCATGCTCATA 58.885 37.500 0.00 0.00 0.00 2.15
47 48 5.759763 TGTATGCTCGTTTTCATGCTCATAT 59.240 36.000 0.00 0.00 0.00 1.78
48 49 5.762825 ATGCTCGTTTTCATGCTCATATT 57.237 34.783 0.00 0.00 0.00 1.28
49 50 5.160699 TGCTCGTTTTCATGCTCATATTC 57.839 39.130 0.00 0.00 0.00 1.75
50 51 4.206843 GCTCGTTTTCATGCTCATATTCG 58.793 43.478 0.00 0.00 0.00 3.34
51 52 4.025730 GCTCGTTTTCATGCTCATATTCGA 60.026 41.667 0.00 0.00 0.00 3.71
52 53 5.389642 TCGTTTTCATGCTCATATTCGAC 57.610 39.130 0.00 0.00 0.00 4.20
53 54 4.867608 TCGTTTTCATGCTCATATTCGACA 59.132 37.500 0.00 0.00 0.00 4.35
54 55 5.523552 TCGTTTTCATGCTCATATTCGACAT 59.476 36.000 0.00 0.00 0.00 3.06
55 56 6.699642 TCGTTTTCATGCTCATATTCGACATA 59.300 34.615 0.00 0.00 0.00 2.29
56 57 7.223777 TCGTTTTCATGCTCATATTCGACATAA 59.776 33.333 0.00 0.00 0.00 1.90
57 58 7.850492 CGTTTTCATGCTCATATTCGACATAAA 59.150 33.333 0.00 0.00 0.00 1.40
58 59 9.669353 GTTTTCATGCTCATATTCGACATAAAT 57.331 29.630 0.00 0.00 0.00 1.40
60 61 9.667989 TTTCATGCTCATATTCGACATAAATTG 57.332 29.630 0.00 0.00 0.00 2.32
61 62 8.382030 TCATGCTCATATTCGACATAAATTGT 57.618 30.769 0.00 0.00 42.79 2.71
75 76 7.759489 ACATAAATTGTCCAAAGCAACTAGA 57.241 32.000 0.00 0.00 30.89 2.43
76 77 7.820648 ACATAAATTGTCCAAAGCAACTAGAG 58.179 34.615 0.00 0.00 30.89 2.43
77 78 7.448469 ACATAAATTGTCCAAAGCAACTAGAGT 59.552 33.333 0.00 0.00 30.89 3.24
78 79 8.946085 CATAAATTGTCCAAAGCAACTAGAGTA 58.054 33.333 0.00 0.00 0.00 2.59
79 80 7.817418 AAATTGTCCAAAGCAACTAGAGTAA 57.183 32.000 0.00 0.00 0.00 2.24
80 81 7.440523 AATTGTCCAAAGCAACTAGAGTAAG 57.559 36.000 0.00 0.00 0.00 2.34
81 82 5.546621 TGTCCAAAGCAACTAGAGTAAGT 57.453 39.130 0.00 0.00 0.00 2.24
82 83 5.539048 TGTCCAAAGCAACTAGAGTAAGTC 58.461 41.667 0.00 0.00 0.00 3.01
83 84 5.304614 TGTCCAAAGCAACTAGAGTAAGTCT 59.695 40.000 0.00 0.00 39.59 3.24
84 85 6.183360 TGTCCAAAGCAACTAGAGTAAGTCTT 60.183 38.462 0.00 0.00 36.64 3.01
85 86 7.014905 TGTCCAAAGCAACTAGAGTAAGTCTTA 59.985 37.037 0.00 0.00 36.64 2.10
86 87 7.542824 GTCCAAAGCAACTAGAGTAAGTCTTAG 59.457 40.741 0.00 0.00 36.64 2.18
87 88 6.311690 CCAAAGCAACTAGAGTAAGTCTTAGC 59.688 42.308 0.00 0.00 36.64 3.09
88 89 6.591750 AAGCAACTAGAGTAAGTCTTAGCA 57.408 37.500 0.00 0.00 36.64 3.49
89 90 6.591750 AGCAACTAGAGTAAGTCTTAGCAA 57.408 37.500 0.00 0.00 36.64 3.91
90 91 7.176589 AGCAACTAGAGTAAGTCTTAGCAAT 57.823 36.000 0.00 0.00 36.64 3.56
91 92 7.616313 AGCAACTAGAGTAAGTCTTAGCAATT 58.384 34.615 0.00 0.00 36.64 2.32
92 93 7.762159 AGCAACTAGAGTAAGTCTTAGCAATTC 59.238 37.037 0.00 0.00 36.64 2.17
93 94 7.545965 GCAACTAGAGTAAGTCTTAGCAATTCA 59.454 37.037 0.00 0.00 36.64 2.57
94 95 9.424319 CAACTAGAGTAAGTCTTAGCAATTCAA 57.576 33.333 0.00 0.00 36.64 2.69
95 96 8.989653 ACTAGAGTAAGTCTTAGCAATTCAAC 57.010 34.615 0.00 0.00 36.64 3.18
96 97 8.585881 ACTAGAGTAAGTCTTAGCAATTCAACA 58.414 33.333 0.00 0.00 36.64 3.33
97 98 7.659652 AGAGTAAGTCTTAGCAATTCAACAC 57.340 36.000 0.00 0.00 27.07 3.32
98 99 7.217200 AGAGTAAGTCTTAGCAATTCAACACA 58.783 34.615 0.00 0.00 27.07 3.72
99 100 7.171678 AGAGTAAGTCTTAGCAATTCAACACAC 59.828 37.037 0.00 0.00 27.07 3.82
100 101 6.765989 AGTAAGTCTTAGCAATTCAACACACA 59.234 34.615 0.00 0.00 0.00 3.72
101 102 5.679734 AGTCTTAGCAATTCAACACACAG 57.320 39.130 0.00 0.00 0.00 3.66
102 103 5.126067 AGTCTTAGCAATTCAACACACAGT 58.874 37.500 0.00 0.00 0.00 3.55
103 104 5.590259 AGTCTTAGCAATTCAACACACAGTT 59.410 36.000 0.00 0.00 42.42 3.16
104 105 6.095440 AGTCTTAGCAATTCAACACACAGTTT 59.905 34.615 0.00 0.00 38.74 2.66
105 106 6.751888 GTCTTAGCAATTCAACACACAGTTTT 59.248 34.615 0.00 0.00 38.74 2.43
106 107 7.913297 GTCTTAGCAATTCAACACACAGTTTTA 59.087 33.333 0.00 0.00 38.74 1.52
107 108 8.128582 TCTTAGCAATTCAACACACAGTTTTAG 58.871 33.333 0.00 0.00 38.74 1.85
108 109 6.207691 AGCAATTCAACACACAGTTTTAGT 57.792 33.333 0.00 0.00 38.74 2.24
109 110 6.630071 AGCAATTCAACACACAGTTTTAGTT 58.370 32.000 0.00 0.00 38.74 2.24
110 111 6.751888 AGCAATTCAACACACAGTTTTAGTTC 59.248 34.615 0.00 0.00 38.74 3.01
111 112 6.529829 GCAATTCAACACACAGTTTTAGTTCA 59.470 34.615 0.00 0.00 38.74 3.18
112 113 7.253750 GCAATTCAACACACAGTTTTAGTTCAG 60.254 37.037 0.00 0.00 38.74 3.02
113 114 5.811399 TCAACACACAGTTTTAGTTCAGG 57.189 39.130 0.00 0.00 38.74 3.86
114 115 4.638421 TCAACACACAGTTTTAGTTCAGGG 59.362 41.667 0.00 0.00 38.74 4.45
115 116 4.497291 ACACACAGTTTTAGTTCAGGGA 57.503 40.909 0.00 0.00 0.00 4.20
116 117 4.196971 ACACACAGTTTTAGTTCAGGGAC 58.803 43.478 0.00 0.00 0.00 4.46
117 118 4.196193 CACACAGTTTTAGTTCAGGGACA 58.804 43.478 0.00 0.00 0.00 4.02
118 119 4.821805 CACACAGTTTTAGTTCAGGGACAT 59.178 41.667 0.00 0.00 0.00 3.06
119 120 5.299279 CACACAGTTTTAGTTCAGGGACATT 59.701 40.000 0.00 0.00 0.00 2.71
120 121 6.485313 CACACAGTTTTAGTTCAGGGACATTA 59.515 38.462 0.00 0.00 0.00 1.90
121 122 6.485648 ACACAGTTTTAGTTCAGGGACATTAC 59.514 38.462 0.00 0.00 0.00 1.89
122 123 6.485313 CACAGTTTTAGTTCAGGGACATTACA 59.515 38.462 0.00 0.00 0.00 2.41
123 124 6.710744 ACAGTTTTAGTTCAGGGACATTACAG 59.289 38.462 0.00 0.00 0.00 2.74
124 125 6.934645 CAGTTTTAGTTCAGGGACATTACAGA 59.065 38.462 0.00 0.00 0.00 3.41
125 126 7.444183 CAGTTTTAGTTCAGGGACATTACAGAA 59.556 37.037 0.00 0.00 0.00 3.02
126 127 7.996644 AGTTTTAGTTCAGGGACATTACAGAAA 59.003 33.333 0.00 0.00 0.00 2.52
127 128 8.793592 GTTTTAGTTCAGGGACATTACAGAAAT 58.206 33.333 0.00 0.00 0.00 2.17
128 129 8.934023 TTTAGTTCAGGGACATTACAGAAATT 57.066 30.769 0.00 0.00 0.00 1.82
129 130 8.934023 TTAGTTCAGGGACATTACAGAAATTT 57.066 30.769 0.00 0.00 0.00 1.82
130 131 7.839680 AGTTCAGGGACATTACAGAAATTTT 57.160 32.000 0.00 0.00 0.00 1.82
131 132 8.934023 AGTTCAGGGACATTACAGAAATTTTA 57.066 30.769 0.00 0.00 0.00 1.52
132 133 9.014297 AGTTCAGGGACATTACAGAAATTTTAG 57.986 33.333 0.00 0.00 0.00 1.85
133 134 7.391148 TCAGGGACATTACAGAAATTTTAGC 57.609 36.000 0.00 0.00 0.00 3.09
134 135 6.945435 TCAGGGACATTACAGAAATTTTAGCA 59.055 34.615 0.00 0.00 0.00 3.49
135 136 7.029563 CAGGGACATTACAGAAATTTTAGCAC 58.970 38.462 0.00 0.00 0.00 4.40
136 137 6.719370 AGGGACATTACAGAAATTTTAGCACA 59.281 34.615 0.00 0.00 0.00 4.57
137 138 6.806739 GGGACATTACAGAAATTTTAGCACAC 59.193 38.462 0.00 0.00 0.00 3.82
138 139 7.367285 GGACATTACAGAAATTTTAGCACACA 58.633 34.615 0.00 0.00 0.00 3.72
139 140 7.865385 GGACATTACAGAAATTTTAGCACACAA 59.135 33.333 0.00 0.00 0.00 3.33
140 141 8.574196 ACATTACAGAAATTTTAGCACACAAC 57.426 30.769 0.00 0.00 0.00 3.32
141 142 8.413229 ACATTACAGAAATTTTAGCACACAACT 58.587 29.630 0.00 0.00 0.00 3.16
142 143 8.905702 CATTACAGAAATTTTAGCACACAACTC 58.094 33.333 0.00 0.00 0.00 3.01
143 144 6.449635 ACAGAAATTTTAGCACACAACTCA 57.550 33.333 0.00 0.00 0.00 3.41
144 145 7.042797 ACAGAAATTTTAGCACACAACTCAT 57.957 32.000 0.00 0.00 0.00 2.90
145 146 7.141363 ACAGAAATTTTAGCACACAACTCATC 58.859 34.615 0.00 0.00 0.00 2.92
146 147 6.583806 CAGAAATTTTAGCACACAACTCATCC 59.416 38.462 0.00 0.00 0.00 3.51
147 148 5.391312 AATTTTAGCACACAACTCATCCC 57.609 39.130 0.00 0.00 0.00 3.85
148 149 3.500448 TTTAGCACACAACTCATCCCA 57.500 42.857 0.00 0.00 0.00 4.37
149 150 3.719268 TTAGCACACAACTCATCCCAT 57.281 42.857 0.00 0.00 0.00 4.00
150 151 4.835284 TTAGCACACAACTCATCCCATA 57.165 40.909 0.00 0.00 0.00 2.74
151 152 3.719268 AGCACACAACTCATCCCATAA 57.281 42.857 0.00 0.00 0.00 1.90
152 153 4.240881 AGCACACAACTCATCCCATAAT 57.759 40.909 0.00 0.00 0.00 1.28
153 154 4.202441 AGCACACAACTCATCCCATAATC 58.798 43.478 0.00 0.00 0.00 1.75
154 155 4.080129 AGCACACAACTCATCCCATAATCT 60.080 41.667 0.00 0.00 0.00 2.40
155 156 4.274459 GCACACAACTCATCCCATAATCTC 59.726 45.833 0.00 0.00 0.00 2.75
156 157 5.430886 CACACAACTCATCCCATAATCTCA 58.569 41.667 0.00 0.00 0.00 3.27
157 158 5.526479 CACACAACTCATCCCATAATCTCAG 59.474 44.000 0.00 0.00 0.00 3.35
158 159 5.426509 ACACAACTCATCCCATAATCTCAGA 59.573 40.000 0.00 0.00 0.00 3.27
159 160 5.757320 CACAACTCATCCCATAATCTCAGAC 59.243 44.000 0.00 0.00 0.00 3.51
160 161 5.163258 ACAACTCATCCCATAATCTCAGACC 60.163 44.000 0.00 0.00 0.00 3.85
161 162 4.560739 ACTCATCCCATAATCTCAGACCA 58.439 43.478 0.00 0.00 0.00 4.02
162 163 4.346418 ACTCATCCCATAATCTCAGACCAC 59.654 45.833 0.00 0.00 0.00 4.16
163 164 4.297768 TCATCCCATAATCTCAGACCACA 58.702 43.478 0.00 0.00 0.00 4.17
164 165 4.721274 TCATCCCATAATCTCAGACCACAA 59.279 41.667 0.00 0.00 0.00 3.33
165 166 5.370584 TCATCCCATAATCTCAGACCACAAT 59.629 40.000 0.00 0.00 0.00 2.71
166 167 5.296151 TCCCATAATCTCAGACCACAATC 57.704 43.478 0.00 0.00 0.00 2.67
167 168 4.971282 TCCCATAATCTCAGACCACAATCT 59.029 41.667 0.00 0.00 0.00 2.40
168 169 5.429762 TCCCATAATCTCAGACCACAATCTT 59.570 40.000 0.00 0.00 0.00 2.40
169 170 6.615316 TCCCATAATCTCAGACCACAATCTTA 59.385 38.462 0.00 0.00 0.00 2.10
170 171 6.933521 CCCATAATCTCAGACCACAATCTTAG 59.066 42.308 0.00 0.00 0.00 2.18
171 172 7.202038 CCCATAATCTCAGACCACAATCTTAGA 60.202 40.741 0.00 0.00 34.31 2.10
172 173 8.206867 CCATAATCTCAGACCACAATCTTAGAA 58.793 37.037 0.00 0.00 33.69 2.10
173 174 9.605275 CATAATCTCAGACCACAATCTTAGAAA 57.395 33.333 0.00 0.00 33.69 2.52
175 176 8.924511 AATCTCAGACCACAATCTTAGAAAAA 57.075 30.769 0.00 0.00 33.69 1.94
176 177 7.969536 TCTCAGACCACAATCTTAGAAAAAG 57.030 36.000 0.00 0.00 28.21 2.27
177 178 7.735917 TCTCAGACCACAATCTTAGAAAAAGA 58.264 34.615 0.00 0.00 28.21 2.52
178 179 8.210946 TCTCAGACCACAATCTTAGAAAAAGAA 58.789 33.333 0.00 0.00 28.21 2.52
179 180 8.154649 TCAGACCACAATCTTAGAAAAAGAAC 57.845 34.615 0.00 0.00 0.00 3.01
180 181 7.993183 TCAGACCACAATCTTAGAAAAAGAACT 59.007 33.333 0.00 0.00 0.00 3.01
181 182 8.286097 CAGACCACAATCTTAGAAAAAGAACTC 58.714 37.037 0.00 0.00 0.00 3.01
182 183 7.171678 AGACCACAATCTTAGAAAAAGAACTCG 59.828 37.037 0.00 0.00 0.00 4.18
183 184 6.204882 ACCACAATCTTAGAAAAAGAACTCGG 59.795 38.462 0.00 0.00 0.00 4.63
184 185 6.080406 CACAATCTTAGAAAAAGAACTCGGC 58.920 40.000 0.00 0.00 0.00 5.54
185 186 5.763204 ACAATCTTAGAAAAAGAACTCGGCA 59.237 36.000 0.00 0.00 0.00 5.69
186 187 6.073003 ACAATCTTAGAAAAAGAACTCGGCAG 60.073 38.462 0.00 0.00 0.00 4.85
187 188 3.746492 TCTTAGAAAAAGAACTCGGCAGC 59.254 43.478 0.00 0.00 0.00 5.25
188 189 2.262423 AGAAAAAGAACTCGGCAGCT 57.738 45.000 0.00 0.00 0.00 4.24
189 190 1.876156 AGAAAAAGAACTCGGCAGCTG 59.124 47.619 10.11 10.11 0.00 4.24
190 191 1.873591 GAAAAAGAACTCGGCAGCTGA 59.126 47.619 20.43 3.23 0.00 4.26
191 192 2.191128 AAAAGAACTCGGCAGCTGAT 57.809 45.000 20.43 0.00 0.00 2.90
192 193 2.191128 AAAGAACTCGGCAGCTGATT 57.809 45.000 20.43 2.43 0.00 2.57
193 194 1.731720 AAGAACTCGGCAGCTGATTC 58.268 50.000 20.43 11.82 0.00 2.52
194 195 0.901124 AGAACTCGGCAGCTGATTCT 59.099 50.000 20.43 13.84 0.00 2.40
195 196 1.005340 GAACTCGGCAGCTGATTCTG 58.995 55.000 20.43 4.97 37.15 3.02
196 197 0.392193 AACTCGGCAGCTGATTCTGG 60.392 55.000 20.43 4.14 34.74 3.86
197 198 1.523258 CTCGGCAGCTGATTCTGGG 60.523 63.158 20.43 0.14 34.74 4.45
198 199 2.249413 CTCGGCAGCTGATTCTGGGT 62.249 60.000 20.43 0.00 34.74 4.51
199 200 2.110967 CGGCAGCTGATTCTGGGTG 61.111 63.158 20.43 5.49 34.74 4.61
200 201 1.300963 GGCAGCTGATTCTGGGTGA 59.699 57.895 20.43 0.00 34.74 4.02
201 202 0.106819 GGCAGCTGATTCTGGGTGAT 60.107 55.000 20.43 0.00 34.74 3.06
202 203 1.684248 GGCAGCTGATTCTGGGTGATT 60.684 52.381 20.43 0.00 34.74 2.57
203 204 1.674962 GCAGCTGATTCTGGGTGATTC 59.325 52.381 20.43 0.00 34.74 2.52
204 205 2.683152 GCAGCTGATTCTGGGTGATTCT 60.683 50.000 20.43 0.00 34.74 2.40
205 206 2.943690 CAGCTGATTCTGGGTGATTCTG 59.056 50.000 8.42 0.00 33.41 3.02
206 207 1.674962 GCTGATTCTGGGTGATTCTGC 59.325 52.381 0.00 0.00 40.25 4.26
207 208 2.942752 GCTGATTCTGGGTGATTCTGCA 60.943 50.000 11.60 0.00 43.32 4.41
208 209 2.943690 CTGATTCTGGGTGATTCTGCAG 59.056 50.000 7.63 7.63 0.00 4.41
209 210 2.295885 GATTCTGGGTGATTCTGCAGG 58.704 52.381 15.13 0.00 0.00 4.85
210 211 1.361204 TTCTGGGTGATTCTGCAGGA 58.639 50.000 15.13 5.14 0.00 3.86
211 212 1.361204 TCTGGGTGATTCTGCAGGAA 58.639 50.000 15.13 7.46 38.41 3.36
212 213 1.280133 TCTGGGTGATTCTGCAGGAAG 59.720 52.381 15.13 0.00 37.36 3.46
213 214 0.322816 TGGGTGATTCTGCAGGAAGC 60.323 55.000 15.13 10.24 45.96 3.86
214 215 0.034670 GGGTGATTCTGCAGGAAGCT 60.035 55.000 15.13 0.00 45.94 3.74
215 216 1.093159 GGTGATTCTGCAGGAAGCTG 58.907 55.000 15.13 0.00 45.94 4.24
222 223 2.165167 TCTGCAGGAAGCTGATTTTGG 58.835 47.619 15.13 0.00 44.91 3.28
223 224 1.203994 CTGCAGGAAGCTGATTTTGGG 59.796 52.381 5.57 0.00 44.15 4.12
224 225 0.533951 GCAGGAAGCTGATTTTGGGG 59.466 55.000 0.00 0.00 41.15 4.96
225 226 0.533951 CAGGAAGCTGATTTTGGGGC 59.466 55.000 0.00 0.00 0.00 5.80
226 227 0.114954 AGGAAGCTGATTTTGGGGCA 59.885 50.000 0.00 0.00 0.00 5.36
227 228 0.975887 GGAAGCTGATTTTGGGGCAA 59.024 50.000 0.00 0.00 0.00 4.52
228 229 1.066645 GGAAGCTGATTTTGGGGCAAG 60.067 52.381 0.00 0.00 0.00 4.01
229 230 1.620323 GAAGCTGATTTTGGGGCAAGT 59.380 47.619 0.00 0.00 0.00 3.16
230 231 1.720781 AGCTGATTTTGGGGCAAGTT 58.279 45.000 0.00 0.00 0.00 2.66
231 232 2.049372 AGCTGATTTTGGGGCAAGTTT 58.951 42.857 0.00 0.00 0.00 2.66
232 233 2.037641 AGCTGATTTTGGGGCAAGTTTC 59.962 45.455 0.00 0.00 0.00 2.78
233 234 2.037641 GCTGATTTTGGGGCAAGTTTCT 59.962 45.455 0.00 0.00 0.00 2.52
234 235 3.862264 GCTGATTTTGGGGCAAGTTTCTC 60.862 47.826 0.00 0.00 0.00 2.87
235 236 3.303938 TGATTTTGGGGCAAGTTTCTCA 58.696 40.909 0.00 0.00 0.00 3.27
236 237 3.708631 TGATTTTGGGGCAAGTTTCTCAA 59.291 39.130 0.00 0.00 0.00 3.02
237 238 4.163078 TGATTTTGGGGCAAGTTTCTCAAA 59.837 37.500 0.00 0.00 0.00 2.69
238 239 4.559862 TTTTGGGGCAAGTTTCTCAAAA 57.440 36.364 8.78 8.78 33.51 2.44
239 240 3.817709 TTGGGGCAAGTTTCTCAAAAG 57.182 42.857 0.00 0.00 0.00 2.27
240 241 1.412343 TGGGGCAAGTTTCTCAAAAGC 59.588 47.619 0.00 0.00 0.00 3.51
241 242 1.688735 GGGGCAAGTTTCTCAAAAGCT 59.311 47.619 0.00 0.00 0.00 3.74
242 243 2.546584 GGGGCAAGTTTCTCAAAAGCTG 60.547 50.000 0.00 0.00 0.00 4.24
243 244 2.362077 GGGCAAGTTTCTCAAAAGCTGA 59.638 45.455 0.00 0.00 0.00 4.26
244 245 3.006217 GGGCAAGTTTCTCAAAAGCTGAT 59.994 43.478 0.00 0.00 32.14 2.90
245 246 4.502087 GGGCAAGTTTCTCAAAAGCTGATT 60.502 41.667 0.00 0.00 32.14 2.57
246 247 5.052481 GGCAAGTTTCTCAAAAGCTGATTT 58.948 37.500 0.00 0.00 32.14 2.17
247 248 5.525012 GGCAAGTTTCTCAAAAGCTGATTTT 59.475 36.000 0.00 0.00 41.91 1.82
269 270 7.775397 TTTGGAGAATCAAAAAGCTGAAAAG 57.225 32.000 0.00 0.00 34.46 2.27
270 271 6.713762 TGGAGAATCAAAAAGCTGAAAAGA 57.286 33.333 0.00 0.00 36.25 2.52
271 272 7.111247 TGGAGAATCAAAAAGCTGAAAAGAA 57.889 32.000 0.00 0.00 36.25 2.52
272 273 7.729116 TGGAGAATCAAAAAGCTGAAAAGAAT 58.271 30.769 0.00 0.00 36.25 2.40
273 274 8.206189 TGGAGAATCAAAAAGCTGAAAAGAATT 58.794 29.630 0.00 0.00 36.25 2.17
274 275 8.493547 GGAGAATCAAAAAGCTGAAAAGAATTG 58.506 33.333 0.00 0.00 36.25 2.32
275 276 8.374327 AGAATCAAAAAGCTGAAAAGAATTGG 57.626 30.769 0.00 0.00 0.00 3.16
276 277 7.443272 AGAATCAAAAAGCTGAAAAGAATTGGG 59.557 33.333 0.00 0.00 0.00 4.12
352 353 1.558741 CTCGAGCAGCTCATGAACTC 58.441 55.000 22.49 0.63 0.00 3.01
390 391 3.436704 ACATTGGTTGACATACGCTTGAG 59.563 43.478 0.00 0.00 0.00 3.02
452 465 4.036734 GCGGGCATGATCTTTAAAGAATGA 59.963 41.667 24.54 12.89 38.77 2.57
454 467 6.376978 CGGGCATGATCTTTAAAGAATGATC 58.623 40.000 24.54 17.28 42.51 2.92
456 469 7.388776 CGGGCATGATCTTTAAAGAATGATCTA 59.611 37.037 24.54 10.54 42.59 1.98
521 534 7.599353 TTATAGGATATACTGGTCTGAGGGA 57.401 40.000 0.00 0.00 0.00 4.20
528 541 8.097662 GGATATACTGGTCTGAGGGAAAAATAG 58.902 40.741 0.00 0.00 0.00 1.73
640 912 3.605922 CGTCTGAAGAGCTGCTACTATCG 60.606 52.174 0.15 0.00 0.00 2.92
723 996 3.060339 GCAAAAATCTTTGTGAACCAGCG 60.060 43.478 0.00 0.00 43.34 5.18
759 1041 4.524328 ACCAGCAAACCCTATTTTCTTCAG 59.476 41.667 0.00 0.00 0.00 3.02
764 1046 5.566826 GCAAACCCTATTTTCTTCAGGAACC 60.567 44.000 0.00 0.00 33.13 3.62
775 1057 3.118186 TCTTCAGGAACCGGTTCAAGAAA 60.118 43.478 40.12 27.63 41.20 2.52
814 1096 5.806286 TCAGCAAAAGACAAGAGTAAAACG 58.194 37.500 0.00 0.00 0.00 3.60
915 1197 8.658840 AACTTGGGTGGTATTATTTTGTACAT 57.341 30.769 0.00 0.00 0.00 2.29
1190 1488 0.033601 TGGTTGCCTGACCTTGTTGT 60.034 50.000 3.15 0.00 40.47 3.32
1226 1524 7.173218 TGGTCAAACTTTTAGTAGCAGAGATTG 59.827 37.037 0.00 0.00 0.00 2.67
1268 1568 5.604758 TTCATGTTTCCACAACATCCAAA 57.395 34.783 0.00 0.00 38.69 3.28
1300 1600 6.791887 TGTTGCTCTCTTGATCTTAACAAG 57.208 37.500 0.00 0.00 43.92 3.16
1506 1866 5.596361 TGCAAAATAGGGTTGAGAAACTTGA 59.404 36.000 0.00 0.00 0.00 3.02
1750 2132 7.307694 TGTTGTCTGATTCACAAGCATTTATC 58.692 34.615 0.00 0.00 34.40 1.75
1889 2271 3.976701 ATGGGAAGCTTCACGGCCG 62.977 63.158 26.86 26.86 31.75 6.13
2090 2474 6.761312 TGATTCTTTTTCCATGCTGTTCAAT 58.239 32.000 0.00 0.00 0.00 2.57
2432 2879 0.664166 GTTGTTGCAGCGGAACATGG 60.664 55.000 14.06 0.00 33.41 3.66
2443 2891 3.443681 AGCGGAACATGGTAAAATGAAGG 59.556 43.478 0.00 0.00 0.00 3.46
2455 2903 9.822185 ATGGTAAAATGAAGGCTTCAAAATATC 57.178 29.630 31.57 22.60 43.95 1.63
2467 2915 7.873505 AGGCTTCAAAATATCGAAGTATCTACC 59.126 37.037 0.00 3.89 40.63 3.18
2515 2964 3.503363 TGTGCAGGTGATTGTGATTTCTC 59.497 43.478 0.00 0.00 0.00 2.87
2527 2976 1.480954 TGATTTCTCGGGTAGGCAGTC 59.519 52.381 0.00 0.00 0.00 3.51
2771 3226 2.165641 TCATGTCCTTAGACGCGACATT 59.834 45.455 15.93 0.00 46.74 2.71
2826 3290 3.025978 CAGGATGGCTGGAATTTTAGCA 58.974 45.455 14.38 4.29 41.63 3.49
2827 3291 3.026694 AGGATGGCTGGAATTTTAGCAC 58.973 45.455 14.38 6.75 41.63 4.40
2837 3301 4.214545 TGGAATTTTAGCACGTGATTTCGT 59.785 37.500 22.23 0.00 45.10 3.85
2860 3324 4.845580 ATCTCGCGCCCTGCTTGG 62.846 66.667 0.00 0.00 43.27 3.61
2966 3439 1.885871 GCACATGTTGCCTTCCTCC 59.114 57.895 0.00 0.00 46.63 4.30
2973 3446 0.107654 GTTGCCTTCCTCCGTATGCT 60.108 55.000 0.00 0.00 0.00 3.79
2992 3465 2.735823 CTGGCTGTGAAGCTGAAAAAC 58.264 47.619 0.00 0.00 34.73 2.43
3029 3514 6.838382 AGTGTAGTTTCTTCCCTAAACATGT 58.162 36.000 0.00 0.00 38.92 3.21
3079 3564 3.057245 CAGTCTAGCACACAAGTAGAGCA 60.057 47.826 0.00 0.00 0.00 4.26
3088 3573 5.506317 GCACACAAGTAGAGCATTTTGTTCT 60.506 40.000 0.00 0.00 40.97 3.01
3103 3588 6.389830 TTTTGTTCTCAGAATAAGCTGCAA 57.610 33.333 1.02 0.00 35.86 4.08
3104 3589 6.389830 TTTGTTCTCAGAATAAGCTGCAAA 57.610 33.333 1.02 0.00 35.86 3.68
3114 3599 9.926158 TCAGAATAAGCTGCAAATTTTAATTGA 57.074 25.926 1.02 0.39 35.86 2.57
3123 3608 9.804547 GCTGCAAATTTTAATTGAATTTTCGTA 57.195 25.926 0.00 2.85 35.21 3.43
3126 3611 9.261318 GCAAATTTTAATTGAATTTTCGTAGGC 57.739 29.630 0.00 7.31 35.21 3.93
3140 3641 2.688446 TCGTAGGCTCTTTGATCGATGT 59.312 45.455 0.54 0.00 0.00 3.06
3142 3643 3.489229 CGTAGGCTCTTTGATCGATGTCA 60.489 47.826 0.54 0.00 0.00 3.58
3156 3657 6.372381 TGATCGATGTCATGTTTGTTTCATCT 59.628 34.615 0.54 0.00 32.36 2.90
3166 3667 4.024387 TGTTTGTTTCATCTAACCTGCGAC 60.024 41.667 0.00 0.00 0.00 5.19
3167 3668 2.695359 TGTTTCATCTAACCTGCGACC 58.305 47.619 0.00 0.00 0.00 4.79
3198 3699 2.361119 CAGCTTGGCGTACTAGATGGTA 59.639 50.000 0.00 0.00 35.23 3.25
3202 3703 2.304092 TGGCGTACTAGATGGTACTGG 58.696 52.381 0.00 0.00 39.67 4.00
3217 3718 2.154567 ACTGGCATGCAATTCTCCAT 57.845 45.000 21.36 0.00 0.00 3.41
3225 3726 5.063817 GGCATGCAATTCTCCATAAACAAAC 59.936 40.000 21.36 0.00 0.00 2.93
3232 3733 7.307337 GCAATTCTCCATAAACAAACAAGTTGG 60.307 37.037 7.96 0.00 41.97 3.77
3248 3749 0.611340 TTGGTGCTGGCATGCATACA 60.611 50.000 21.36 10.86 45.23 2.29
3255 3756 1.199327 CTGGCATGCATACATAGCAGC 59.801 52.381 21.36 0.00 46.36 5.25
3315 3822 6.702716 AAAGTTCATCGGAGGTTGTAAAAA 57.297 33.333 0.00 0.00 0.00 1.94
3348 3855 9.196552 GGAGTTGAGGTCTTTCAAAAATAAATG 57.803 33.333 0.00 0.00 38.69 2.32
3377 3884 9.979578 TGTTAAATTAGCTCAAATTCATGTGTT 57.020 25.926 0.00 0.00 0.00 3.32
3417 3924 2.438795 GGGCCGCCGGTATTTTCA 60.439 61.111 4.45 0.00 0.00 2.69
3435 3942 0.944311 CACCCAACGACTGAACGGAG 60.944 60.000 0.00 0.00 37.61 4.63
3442 3949 0.597637 CGACTGAACGGAGCACTGTT 60.598 55.000 8.17 8.17 46.68 3.16
3443 3950 0.861837 GACTGAACGGAGCACTGTTG 59.138 55.000 13.38 2.55 44.44 3.33
3445 3952 0.583438 CTGAACGGAGCACTGTTGTG 59.417 55.000 13.38 2.12 44.44 3.33
3455 4000 4.383552 GGAGCACTGTTGTGAGGATAAGAT 60.384 45.833 0.00 0.00 46.55 2.40
3463 4008 5.069648 TGTTGTGAGGATAAGATAGCTGGAG 59.930 44.000 0.00 0.00 0.00 3.86
3470 4015 5.304101 AGGATAAGATAGCTGGAGTTCTGTG 59.696 44.000 0.00 0.00 0.00 3.66
3499 4044 3.339253 AACCCGGCCCGAAATATATAC 57.661 47.619 3.71 0.00 0.00 1.47
3500 4045 2.543635 ACCCGGCCCGAAATATATACT 58.456 47.619 3.71 0.00 0.00 2.12
3503 4048 3.937079 CCCGGCCCGAAATATATACTTTC 59.063 47.826 3.71 0.00 0.00 2.62
3504 4049 4.323257 CCCGGCCCGAAATATATACTTTCT 60.323 45.833 3.71 0.00 31.79 2.52
3505 4050 4.868734 CCGGCCCGAAATATATACTTTCTC 59.131 45.833 3.71 5.44 31.79 2.87
3506 4051 4.868734 CGGCCCGAAATATATACTTTCTCC 59.131 45.833 0.00 10.06 31.79 3.71
3507 4052 4.868734 GGCCCGAAATATATACTTTCTCCG 59.131 45.833 0.00 0.00 31.79 4.63
3508 4053 5.476614 GCCCGAAATATATACTTTCTCCGT 58.523 41.667 12.08 0.00 31.79 4.69
3509 4054 5.930569 GCCCGAAATATATACTTTCTCCGTT 59.069 40.000 12.08 0.00 31.79 4.44
3510 4055 6.090493 GCCCGAAATATATACTTTCTCCGTTC 59.910 42.308 12.08 0.00 31.79 3.95
3511 4056 6.589139 CCCGAAATATATACTTTCTCCGTTCC 59.411 42.308 12.08 0.00 31.79 3.62
3512 4057 6.307318 CCGAAATATATACTTTCTCCGTTCCG 59.693 42.308 12.08 0.00 31.79 4.30
3513 4058 7.080099 CGAAATATATACTTTCTCCGTTCCGA 58.920 38.462 12.08 0.00 31.79 4.55
3514 4059 7.592533 CGAAATATATACTTTCTCCGTTCCGAA 59.407 37.037 12.08 0.00 31.79 4.30
3515 4060 9.420551 GAAATATATACTTTCTCCGTTCCGAAT 57.579 33.333 8.93 0.00 31.38 3.34
3516 4061 9.774413 AAATATATACTTTCTCCGTTCCGAATT 57.226 29.630 0.00 0.00 0.00 2.17
3518 4063 9.852091 ATATATACTTTCTCCGTTCCGAATTAC 57.148 33.333 0.00 0.00 0.00 1.89
3519 4064 4.532314 ACTTTCTCCGTTCCGAATTACT 57.468 40.909 0.00 0.00 0.00 2.24
3520 4065 4.891260 ACTTTCTCCGTTCCGAATTACTT 58.109 39.130 0.00 0.00 0.00 2.24
3521 4066 4.689345 ACTTTCTCCGTTCCGAATTACTTG 59.311 41.667 0.00 0.00 0.00 3.16
3522 4067 3.947910 TCTCCGTTCCGAATTACTTGT 57.052 42.857 0.00 0.00 0.00 3.16
3523 4068 3.841643 TCTCCGTTCCGAATTACTTGTC 58.158 45.455 0.00 0.00 0.00 3.18
3524 4069 2.597305 CTCCGTTCCGAATTACTTGTCG 59.403 50.000 0.00 0.00 37.01 4.35
3525 4070 1.060122 CCGTTCCGAATTACTTGTCGC 59.940 52.381 0.00 0.00 35.93 5.19
3526 4071 1.722464 CGTTCCGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 35.93 5.10
3527 4072 2.471749 CGTTCCGAATTACTTGTCGCAC 60.472 50.000 0.00 0.00 35.93 5.34
3528 4073 1.342555 TCCGAATTACTTGTCGCACG 58.657 50.000 0.00 0.00 35.93 5.34
3529 4074 1.065358 CCGAATTACTTGTCGCACGT 58.935 50.000 0.00 0.00 35.93 4.49
3530 4075 2.095314 TCCGAATTACTTGTCGCACGTA 60.095 45.455 0.00 0.00 35.93 3.57
3531 4076 2.855963 CCGAATTACTTGTCGCACGTAT 59.144 45.455 0.00 0.00 35.93 3.06
3532 4077 3.301579 CCGAATTACTTGTCGCACGTATG 60.302 47.826 0.00 0.00 35.93 2.39
3533 4078 3.301579 CGAATTACTTGTCGCACGTATGG 60.302 47.826 0.00 0.00 0.00 2.74
3534 4079 3.513680 ATTACTTGTCGCACGTATGGA 57.486 42.857 0.00 0.00 0.00 3.41
3535 4080 3.513680 TTACTTGTCGCACGTATGGAT 57.486 42.857 0.00 0.00 0.00 3.41
3536 4081 1.640428 ACTTGTCGCACGTATGGATG 58.360 50.000 0.00 0.00 0.00 3.51
3537 4082 1.203758 ACTTGTCGCACGTATGGATGA 59.796 47.619 0.00 0.00 0.00 2.92
3538 4083 2.159099 ACTTGTCGCACGTATGGATGAT 60.159 45.455 0.00 0.00 0.00 2.45
3539 4084 3.067601 ACTTGTCGCACGTATGGATGATA 59.932 43.478 0.00 0.00 0.00 2.15
3540 4085 3.719173 TGTCGCACGTATGGATGATAA 57.281 42.857 0.00 0.00 0.00 1.75
3541 4086 3.377439 TGTCGCACGTATGGATGATAAC 58.623 45.455 0.00 0.00 0.00 1.89
3542 4087 2.729882 GTCGCACGTATGGATGATAACC 59.270 50.000 0.00 0.00 0.00 2.85
3543 4088 2.362717 TCGCACGTATGGATGATAACCA 59.637 45.455 0.00 0.00 41.83 3.67
3544 4089 2.731451 CGCACGTATGGATGATAACCAG 59.269 50.000 0.00 0.00 40.89 4.00
3545 4090 3.067106 GCACGTATGGATGATAACCAGG 58.933 50.000 0.00 0.00 40.89 4.45
3546 4091 3.494398 GCACGTATGGATGATAACCAGGT 60.494 47.826 0.00 0.00 40.89 4.00
3547 4092 4.262292 GCACGTATGGATGATAACCAGGTA 60.262 45.833 0.00 0.00 40.89 3.08
3633 4178 3.053828 GCCACCAGCAACAGCAAT 58.946 55.556 0.00 0.00 42.97 3.56
3634 4179 1.373748 GCCACCAGCAACAGCAATG 60.374 57.895 0.00 0.00 42.97 2.82
3635 4180 2.043625 CCACCAGCAACAGCAATGT 58.956 52.632 0.00 0.00 0.00 2.71
3636 4181 0.390124 CCACCAGCAACAGCAATGTT 59.610 50.000 0.00 0.00 0.00 2.71
3637 4182 1.612950 CCACCAGCAACAGCAATGTTA 59.387 47.619 0.00 0.00 0.00 2.41
3638 4183 2.231964 CCACCAGCAACAGCAATGTTAT 59.768 45.455 0.00 0.00 0.00 1.89
3639 4184 3.443329 CCACCAGCAACAGCAATGTTATA 59.557 43.478 0.00 0.00 0.00 0.98
3640 4185 4.414852 CACCAGCAACAGCAATGTTATAC 58.585 43.478 0.00 0.00 0.00 1.47
3641 4186 3.443681 ACCAGCAACAGCAATGTTATACC 59.556 43.478 0.00 0.00 0.00 2.73
3642 4187 3.696051 CCAGCAACAGCAATGTTATACCT 59.304 43.478 0.00 0.00 0.00 3.08
3643 4188 4.439153 CCAGCAACAGCAATGTTATACCTG 60.439 45.833 0.00 0.00 0.00 4.00
3644 4189 3.129287 AGCAACAGCAATGTTATACCTGC 59.871 43.478 0.00 0.00 34.96 4.85
3645 4190 3.119531 GCAACAGCAATGTTATACCTGCA 60.120 43.478 0.00 0.00 37.26 4.41
3646 4191 4.617995 GCAACAGCAATGTTATACCTGCAA 60.618 41.667 0.00 0.00 37.26 4.08
3647 4192 5.468592 CAACAGCAATGTTATACCTGCAAA 58.531 37.500 0.00 0.00 37.26 3.68
3648 4193 5.720371 ACAGCAATGTTATACCTGCAAAA 57.280 34.783 0.00 0.00 37.26 2.44
3649 4194 6.095432 ACAGCAATGTTATACCTGCAAAAA 57.905 33.333 0.00 0.00 37.26 1.94
3670 4215 5.717038 AAAAAGCAACAGCAATGTTACAC 57.283 34.783 0.00 0.00 0.00 2.90
3671 4216 4.383850 AAAGCAACAGCAATGTTACACA 57.616 36.364 0.00 0.00 0.00 3.72
3672 4217 3.631145 AGCAACAGCAATGTTACACAG 57.369 42.857 0.00 0.00 0.00 3.66
3673 4218 3.213506 AGCAACAGCAATGTTACACAGA 58.786 40.909 0.00 0.00 0.00 3.41
3674 4219 3.003689 AGCAACAGCAATGTTACACAGAC 59.996 43.478 0.00 0.00 0.00 3.51
3675 4220 3.243035 GCAACAGCAATGTTACACAGACA 60.243 43.478 0.00 0.00 0.00 3.41
3676 4221 4.530388 CAACAGCAATGTTACACAGACAG 58.470 43.478 0.00 0.00 0.00 3.51
3677 4222 3.808728 ACAGCAATGTTACACAGACAGT 58.191 40.909 0.00 0.00 0.00 3.55
3678 4223 3.809832 ACAGCAATGTTACACAGACAGTC 59.190 43.478 0.00 0.00 0.00 3.51
3679 4224 3.809279 CAGCAATGTTACACAGACAGTCA 59.191 43.478 2.66 0.00 0.00 3.41
3680 4225 3.809832 AGCAATGTTACACAGACAGTCAC 59.190 43.478 2.66 0.00 0.00 3.67
3681 4226 3.809832 GCAATGTTACACAGACAGTCACT 59.190 43.478 2.66 0.00 0.00 3.41
3682 4227 4.319046 GCAATGTTACACAGACAGTCACTG 60.319 45.833 2.22 2.22 40.68 3.66
3683 4228 2.821546 TGTTACACAGACAGTCACTGC 58.178 47.619 4.13 0.00 38.74 4.40
3684 4229 2.135933 GTTACACAGACAGTCACTGCC 58.864 52.381 4.13 0.00 38.74 4.85
3685 4230 1.408969 TACACAGACAGTCACTGCCA 58.591 50.000 4.13 0.00 38.74 4.92
3686 4231 0.541392 ACACAGACAGTCACTGCCAA 59.459 50.000 4.13 0.00 38.74 4.52
3687 4232 1.224075 CACAGACAGTCACTGCCAAG 58.776 55.000 4.13 0.00 38.74 3.61
3688 4233 1.123077 ACAGACAGTCACTGCCAAGA 58.877 50.000 4.13 0.00 38.74 3.02
3689 4234 1.069823 ACAGACAGTCACTGCCAAGAG 59.930 52.381 4.13 0.00 38.74 2.85
3690 4235 0.683973 AGACAGTCACTGCCAAGAGG 59.316 55.000 4.13 0.00 34.37 3.69
3707 4252 3.622362 GCGACACGCGTCAACACA 61.622 61.111 9.86 0.00 44.55 3.72
3708 4253 2.241537 CGACACGCGTCAACACAC 59.758 61.111 9.86 0.00 42.74 3.82
3709 4254 2.228241 CGACACGCGTCAACACACT 61.228 57.895 9.86 0.00 42.74 3.55
3710 4255 1.558383 GACACGCGTCAACACACTC 59.442 57.895 9.86 0.00 42.13 3.51
3711 4256 0.870307 GACACGCGTCAACACACTCT 60.870 55.000 9.86 0.00 42.13 3.24
3712 4257 0.459585 ACACGCGTCAACACACTCTT 60.460 50.000 9.86 0.00 0.00 2.85
3713 4258 0.650512 CACGCGTCAACACACTCTTT 59.349 50.000 9.86 0.00 0.00 2.52
3714 4259 0.928229 ACGCGTCAACACACTCTTTC 59.072 50.000 5.58 0.00 0.00 2.62
3715 4260 0.927537 CGCGTCAACACACTCTTTCA 59.072 50.000 0.00 0.00 0.00 2.69
3716 4261 1.332028 CGCGTCAACACACTCTTTCAC 60.332 52.381 0.00 0.00 0.00 3.18
3717 4262 1.663643 GCGTCAACACACTCTTTCACA 59.336 47.619 0.00 0.00 0.00 3.58
3718 4263 2.287915 GCGTCAACACACTCTTTCACAT 59.712 45.455 0.00 0.00 0.00 3.21
3719 4264 3.846023 GCGTCAACACACTCTTTCACATG 60.846 47.826 0.00 0.00 0.00 3.21
3720 4265 3.303329 CGTCAACACACTCTTTCACATGG 60.303 47.826 0.00 0.00 0.00 3.66
3721 4266 2.618241 TCAACACACTCTTTCACATGGC 59.382 45.455 0.00 0.00 0.00 4.40
3722 4267 2.346766 ACACACTCTTTCACATGGCA 57.653 45.000 0.00 0.00 0.00 4.92
3723 4268 2.224606 ACACACTCTTTCACATGGCAG 58.775 47.619 0.00 0.00 0.00 4.85
3724 4269 1.068748 CACACTCTTTCACATGGCAGC 60.069 52.381 0.00 0.00 0.00 5.25
3725 4270 0.524862 CACTCTTTCACATGGCAGCC 59.475 55.000 3.66 3.66 0.00 4.85
3726 4271 0.610232 ACTCTTTCACATGGCAGCCC 60.610 55.000 9.64 0.00 0.00 5.19
3728 4273 0.609957 TCTTTCACATGGCAGCCCAG 60.610 55.000 9.64 3.50 46.24 4.45
3729 4274 0.896940 CTTTCACATGGCAGCCCAGT 60.897 55.000 9.64 4.26 46.24 4.00
3730 4275 1.180456 TTTCACATGGCAGCCCAGTG 61.180 55.000 21.72 21.72 46.24 3.66
3731 4276 3.066190 CACATGGCAGCCCAGTGG 61.066 66.667 20.54 0.63 46.24 4.00
3741 4286 2.515398 CCCAGTGGCAAGGTCACA 59.485 61.111 2.61 0.00 41.04 3.58
3742 4287 1.601759 CCCAGTGGCAAGGTCACAG 60.602 63.158 2.61 0.00 41.04 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.751060 TCCATTCAGCAATCAAGCAAATC 58.249 39.130 0.00 0.00 36.85 2.17
2 3 4.020928 ACATCCATTCAGCAATCAAGCAAA 60.021 37.500 0.00 0.00 36.85 3.68
3 4 3.512329 ACATCCATTCAGCAATCAAGCAA 59.488 39.130 0.00 0.00 36.85 3.91
4 5 3.093814 ACATCCATTCAGCAATCAAGCA 58.906 40.909 0.00 0.00 36.85 3.91
5 6 3.795623 ACATCCATTCAGCAATCAAGC 57.204 42.857 0.00 0.00 0.00 4.01
6 7 5.009710 AGCATACATCCATTCAGCAATCAAG 59.990 40.000 0.00 0.00 0.00 3.02
7 8 4.891168 AGCATACATCCATTCAGCAATCAA 59.109 37.500 0.00 0.00 0.00 2.57
8 9 4.466827 AGCATACATCCATTCAGCAATCA 58.533 39.130 0.00 0.00 0.00 2.57
9 10 4.378149 CGAGCATACATCCATTCAGCAATC 60.378 45.833 0.00 0.00 0.00 2.67
10 11 3.501062 CGAGCATACATCCATTCAGCAAT 59.499 43.478 0.00 0.00 0.00 3.56
11 12 2.874086 CGAGCATACATCCATTCAGCAA 59.126 45.455 0.00 0.00 0.00 3.91
12 13 2.158914 ACGAGCATACATCCATTCAGCA 60.159 45.455 0.00 0.00 0.00 4.41
13 14 2.487934 ACGAGCATACATCCATTCAGC 58.512 47.619 0.00 0.00 0.00 4.26
14 15 5.065090 TGAAAACGAGCATACATCCATTCAG 59.935 40.000 0.00 0.00 0.00 3.02
15 16 4.940654 TGAAAACGAGCATACATCCATTCA 59.059 37.500 0.00 0.00 0.00 2.57
16 17 5.484173 TGAAAACGAGCATACATCCATTC 57.516 39.130 0.00 0.00 0.00 2.67
17 18 5.734220 GCATGAAAACGAGCATACATCCATT 60.734 40.000 0.00 0.00 0.00 3.16
18 19 4.261322 GCATGAAAACGAGCATACATCCAT 60.261 41.667 0.00 0.00 0.00 3.41
19 20 3.065233 GCATGAAAACGAGCATACATCCA 59.935 43.478 0.00 0.00 0.00 3.41
20 21 3.313526 AGCATGAAAACGAGCATACATCC 59.686 43.478 0.00 0.00 0.00 3.51
21 22 4.034394 TGAGCATGAAAACGAGCATACATC 59.966 41.667 0.00 0.00 0.00 3.06
22 23 3.940852 TGAGCATGAAAACGAGCATACAT 59.059 39.130 0.00 0.00 0.00 2.29
23 24 3.333804 TGAGCATGAAAACGAGCATACA 58.666 40.909 0.00 0.00 0.00 2.29
24 25 4.542662 ATGAGCATGAAAACGAGCATAC 57.457 40.909 0.00 0.00 0.00 2.39
25 26 6.346838 CGAATATGAGCATGAAAACGAGCATA 60.347 38.462 0.00 0.00 0.00 3.14
26 27 5.559608 CGAATATGAGCATGAAAACGAGCAT 60.560 40.000 0.00 0.00 0.00 3.79
27 28 4.260334 CGAATATGAGCATGAAAACGAGCA 60.260 41.667 0.00 0.00 0.00 4.26
28 29 4.025730 TCGAATATGAGCATGAAAACGAGC 60.026 41.667 0.00 0.00 0.00 5.03
29 30 5.005682 TGTCGAATATGAGCATGAAAACGAG 59.994 40.000 0.00 0.00 0.00 4.18
30 31 4.867608 TGTCGAATATGAGCATGAAAACGA 59.132 37.500 0.00 0.00 0.00 3.85
31 32 5.142635 TGTCGAATATGAGCATGAAAACG 57.857 39.130 0.00 0.00 0.00 3.60
32 33 9.669353 ATTTATGTCGAATATGAGCATGAAAAC 57.331 29.630 0.00 0.00 0.00 2.43
34 35 9.667989 CAATTTATGTCGAATATGAGCATGAAA 57.332 29.630 0.00 0.00 0.00 2.69
35 36 8.839343 ACAATTTATGTCGAATATGAGCATGAA 58.161 29.630 0.00 0.00 37.96 2.57
36 37 8.382030 ACAATTTATGTCGAATATGAGCATGA 57.618 30.769 0.00 0.00 37.96 3.07
52 53 7.820648 ACTCTAGTTGCTTTGGACAATTTATG 58.179 34.615 0.00 0.00 0.00 1.90
53 54 9.515226 TTACTCTAGTTGCTTTGGACAATTTAT 57.485 29.630 0.00 0.00 0.00 1.40
54 55 8.911918 TTACTCTAGTTGCTTTGGACAATTTA 57.088 30.769 0.00 0.00 0.00 1.40
55 56 7.502561 ACTTACTCTAGTTGCTTTGGACAATTT 59.497 33.333 0.00 0.00 0.00 1.82
56 57 6.998673 ACTTACTCTAGTTGCTTTGGACAATT 59.001 34.615 0.00 0.00 0.00 2.32
57 58 6.534634 ACTTACTCTAGTTGCTTTGGACAAT 58.465 36.000 0.00 0.00 0.00 2.71
58 59 5.925509 ACTTACTCTAGTTGCTTTGGACAA 58.074 37.500 0.00 0.00 0.00 3.18
59 60 5.304614 AGACTTACTCTAGTTGCTTTGGACA 59.695 40.000 0.00 0.00 0.00 4.02
60 61 5.785243 AGACTTACTCTAGTTGCTTTGGAC 58.215 41.667 0.00 0.00 0.00 4.02
61 62 6.420913 AAGACTTACTCTAGTTGCTTTGGA 57.579 37.500 0.00 0.00 0.00 3.53
62 63 6.311690 GCTAAGACTTACTCTAGTTGCTTTGG 59.688 42.308 0.00 0.00 0.00 3.28
63 64 6.868864 TGCTAAGACTTACTCTAGTTGCTTTG 59.131 38.462 0.00 0.00 0.00 2.77
64 65 6.994221 TGCTAAGACTTACTCTAGTTGCTTT 58.006 36.000 0.00 0.00 0.00 3.51
65 66 6.591750 TGCTAAGACTTACTCTAGTTGCTT 57.408 37.500 0.00 0.00 0.00 3.91
66 67 6.591750 TTGCTAAGACTTACTCTAGTTGCT 57.408 37.500 0.00 0.00 0.00 3.91
67 68 7.545965 TGAATTGCTAAGACTTACTCTAGTTGC 59.454 37.037 0.00 0.00 0.00 4.17
68 69 8.988064 TGAATTGCTAAGACTTACTCTAGTTG 57.012 34.615 0.00 0.00 0.00 3.16
69 70 9.425577 GTTGAATTGCTAAGACTTACTCTAGTT 57.574 33.333 0.00 0.00 0.00 2.24
70 71 8.585881 TGTTGAATTGCTAAGACTTACTCTAGT 58.414 33.333 0.00 0.00 0.00 2.57
71 72 8.865001 GTGTTGAATTGCTAAGACTTACTCTAG 58.135 37.037 0.00 0.00 0.00 2.43
72 73 8.364894 TGTGTTGAATTGCTAAGACTTACTCTA 58.635 33.333 0.00 0.00 0.00 2.43
73 74 7.171678 GTGTGTTGAATTGCTAAGACTTACTCT 59.828 37.037 0.00 0.00 0.00 3.24
74 75 7.042051 TGTGTGTTGAATTGCTAAGACTTACTC 60.042 37.037 0.00 0.00 0.00 2.59
75 76 6.765989 TGTGTGTTGAATTGCTAAGACTTACT 59.234 34.615 0.00 0.00 0.00 2.24
76 77 6.954944 TGTGTGTTGAATTGCTAAGACTTAC 58.045 36.000 0.00 0.00 0.00 2.34
77 78 6.765989 ACTGTGTGTTGAATTGCTAAGACTTA 59.234 34.615 0.00 0.00 0.00 2.24
78 79 5.590259 ACTGTGTGTTGAATTGCTAAGACTT 59.410 36.000 0.00 0.00 0.00 3.01
79 80 5.126067 ACTGTGTGTTGAATTGCTAAGACT 58.874 37.500 0.00 0.00 0.00 3.24
80 81 5.424121 ACTGTGTGTTGAATTGCTAAGAC 57.576 39.130 0.00 0.00 0.00 3.01
81 82 6.449635 AAACTGTGTGTTGAATTGCTAAGA 57.550 33.333 0.00 0.00 39.13 2.10
82 83 7.915397 ACTAAAACTGTGTGTTGAATTGCTAAG 59.085 33.333 0.00 0.00 39.13 2.18
83 84 7.767261 ACTAAAACTGTGTGTTGAATTGCTAA 58.233 30.769 0.00 0.00 39.13 3.09
84 85 7.328277 ACTAAAACTGTGTGTTGAATTGCTA 57.672 32.000 0.00 0.00 39.13 3.49
85 86 6.207691 ACTAAAACTGTGTGTTGAATTGCT 57.792 33.333 0.00 0.00 39.13 3.91
86 87 6.529829 TGAACTAAAACTGTGTGTTGAATTGC 59.470 34.615 0.00 0.00 39.13 3.56
87 88 7.220683 CCTGAACTAAAACTGTGTGTTGAATTG 59.779 37.037 0.00 0.00 39.13 2.32
88 89 7.257722 CCTGAACTAAAACTGTGTGTTGAATT 58.742 34.615 0.00 0.00 39.13 2.17
89 90 6.183360 CCCTGAACTAAAACTGTGTGTTGAAT 60.183 38.462 0.00 0.00 39.13 2.57
90 91 5.124776 CCCTGAACTAAAACTGTGTGTTGAA 59.875 40.000 0.00 0.00 39.13 2.69
91 92 4.638421 CCCTGAACTAAAACTGTGTGTTGA 59.362 41.667 0.00 0.00 39.13 3.18
92 93 4.638421 TCCCTGAACTAAAACTGTGTGTTG 59.362 41.667 0.00 0.00 39.13 3.33
93 94 4.638865 GTCCCTGAACTAAAACTGTGTGTT 59.361 41.667 0.00 0.00 41.29 3.32
94 95 4.196971 GTCCCTGAACTAAAACTGTGTGT 58.803 43.478 0.00 0.00 0.00 3.72
95 96 4.196193 TGTCCCTGAACTAAAACTGTGTG 58.804 43.478 0.00 0.00 0.00 3.82
96 97 4.497291 TGTCCCTGAACTAAAACTGTGT 57.503 40.909 0.00 0.00 0.00 3.72
97 98 6.485313 TGTAATGTCCCTGAACTAAAACTGTG 59.515 38.462 0.00 0.00 0.00 3.66
98 99 6.597562 TGTAATGTCCCTGAACTAAAACTGT 58.402 36.000 0.00 0.00 0.00 3.55
99 100 6.934645 TCTGTAATGTCCCTGAACTAAAACTG 59.065 38.462 0.00 0.00 0.00 3.16
100 101 7.074653 TCTGTAATGTCCCTGAACTAAAACT 57.925 36.000 0.00 0.00 0.00 2.66
101 102 7.739498 TTCTGTAATGTCCCTGAACTAAAAC 57.261 36.000 0.00 0.00 0.00 2.43
102 103 8.934023 ATTTCTGTAATGTCCCTGAACTAAAA 57.066 30.769 0.00 0.00 0.00 1.52
103 104 8.934023 AATTTCTGTAATGTCCCTGAACTAAA 57.066 30.769 0.00 0.00 0.00 1.85
104 105 8.934023 AAATTTCTGTAATGTCCCTGAACTAA 57.066 30.769 0.00 0.00 0.00 2.24
105 106 8.934023 AAAATTTCTGTAATGTCCCTGAACTA 57.066 30.769 0.00 0.00 0.00 2.24
106 107 7.839680 AAAATTTCTGTAATGTCCCTGAACT 57.160 32.000 0.00 0.00 0.00 3.01
107 108 7.755373 GCTAAAATTTCTGTAATGTCCCTGAAC 59.245 37.037 0.00 0.00 0.00 3.18
108 109 7.450014 TGCTAAAATTTCTGTAATGTCCCTGAA 59.550 33.333 0.00 0.00 0.00 3.02
109 110 6.945435 TGCTAAAATTTCTGTAATGTCCCTGA 59.055 34.615 0.00 0.00 0.00 3.86
110 111 7.029563 GTGCTAAAATTTCTGTAATGTCCCTG 58.970 38.462 0.00 0.00 0.00 4.45
111 112 6.719370 TGTGCTAAAATTTCTGTAATGTCCCT 59.281 34.615 0.00 0.00 0.00 4.20
112 113 6.806739 GTGTGCTAAAATTTCTGTAATGTCCC 59.193 38.462 0.00 0.00 0.00 4.46
113 114 7.367285 TGTGTGCTAAAATTTCTGTAATGTCC 58.633 34.615 0.00 0.00 0.00 4.02
114 115 8.690840 GTTGTGTGCTAAAATTTCTGTAATGTC 58.309 33.333 0.00 0.00 0.00 3.06
115 116 8.413229 AGTTGTGTGCTAAAATTTCTGTAATGT 58.587 29.630 0.00 0.00 0.00 2.71
116 117 8.801715 AGTTGTGTGCTAAAATTTCTGTAATG 57.198 30.769 0.00 0.00 0.00 1.90
117 118 8.629158 TGAGTTGTGTGCTAAAATTTCTGTAAT 58.371 29.630 0.00 0.00 0.00 1.89
118 119 7.990917 TGAGTTGTGTGCTAAAATTTCTGTAA 58.009 30.769 0.00 0.00 0.00 2.41
119 120 7.561021 TGAGTTGTGTGCTAAAATTTCTGTA 57.439 32.000 0.00 0.00 0.00 2.74
120 121 6.449635 TGAGTTGTGTGCTAAAATTTCTGT 57.550 33.333 0.00 0.00 0.00 3.41
121 122 6.583806 GGATGAGTTGTGTGCTAAAATTTCTG 59.416 38.462 0.00 0.00 0.00 3.02
122 123 6.294731 GGGATGAGTTGTGTGCTAAAATTTCT 60.295 38.462 0.00 0.00 0.00 2.52
123 124 5.863935 GGGATGAGTTGTGTGCTAAAATTTC 59.136 40.000 0.00 0.00 0.00 2.17
124 125 5.304101 TGGGATGAGTTGTGTGCTAAAATTT 59.696 36.000 0.00 0.00 0.00 1.82
125 126 4.832266 TGGGATGAGTTGTGTGCTAAAATT 59.168 37.500 0.00 0.00 0.00 1.82
126 127 4.406456 TGGGATGAGTTGTGTGCTAAAAT 58.594 39.130 0.00 0.00 0.00 1.82
127 128 3.826524 TGGGATGAGTTGTGTGCTAAAA 58.173 40.909 0.00 0.00 0.00 1.52
128 129 3.500448 TGGGATGAGTTGTGTGCTAAA 57.500 42.857 0.00 0.00 0.00 1.85
129 130 3.719268 ATGGGATGAGTTGTGTGCTAA 57.281 42.857 0.00 0.00 0.00 3.09
130 131 4.835284 TTATGGGATGAGTTGTGTGCTA 57.165 40.909 0.00 0.00 0.00 3.49
131 132 3.719268 TTATGGGATGAGTTGTGTGCT 57.281 42.857 0.00 0.00 0.00 4.40
132 133 4.202441 AGATTATGGGATGAGTTGTGTGC 58.798 43.478 0.00 0.00 0.00 4.57
133 134 5.430886 TGAGATTATGGGATGAGTTGTGTG 58.569 41.667 0.00 0.00 0.00 3.82
134 135 5.426509 TCTGAGATTATGGGATGAGTTGTGT 59.573 40.000 0.00 0.00 0.00 3.72
135 136 5.757320 GTCTGAGATTATGGGATGAGTTGTG 59.243 44.000 0.00 0.00 0.00 3.33
136 137 5.163258 GGTCTGAGATTATGGGATGAGTTGT 60.163 44.000 0.00 0.00 0.00 3.32
137 138 5.163269 TGGTCTGAGATTATGGGATGAGTTG 60.163 44.000 0.00 0.00 0.00 3.16
138 139 4.971282 TGGTCTGAGATTATGGGATGAGTT 59.029 41.667 0.00 0.00 0.00 3.01
139 140 4.346418 GTGGTCTGAGATTATGGGATGAGT 59.654 45.833 0.00 0.00 0.00 3.41
140 141 4.346127 TGTGGTCTGAGATTATGGGATGAG 59.654 45.833 0.00 0.00 0.00 2.90
141 142 4.297768 TGTGGTCTGAGATTATGGGATGA 58.702 43.478 0.00 0.00 0.00 2.92
142 143 4.694760 TGTGGTCTGAGATTATGGGATG 57.305 45.455 0.00 0.00 0.00 3.51
143 144 5.610132 AGATTGTGGTCTGAGATTATGGGAT 59.390 40.000 0.00 0.00 0.00 3.85
144 145 4.971282 AGATTGTGGTCTGAGATTATGGGA 59.029 41.667 0.00 0.00 0.00 4.37
145 146 5.301835 AGATTGTGGTCTGAGATTATGGG 57.698 43.478 0.00 0.00 0.00 4.00
146 147 7.730084 TCTAAGATTGTGGTCTGAGATTATGG 58.270 38.462 0.00 0.00 31.95 2.74
147 148 9.605275 TTTCTAAGATTGTGGTCTGAGATTATG 57.395 33.333 0.00 0.00 35.97 1.90
150 151 8.924511 TTTTTCTAAGATTGTGGTCTGAGATT 57.075 30.769 0.00 0.00 35.97 2.40
151 152 8.378565 TCTTTTTCTAAGATTGTGGTCTGAGAT 58.621 33.333 0.00 0.00 35.97 2.75
152 153 7.735917 TCTTTTTCTAAGATTGTGGTCTGAGA 58.264 34.615 0.00 0.00 34.53 3.27
153 154 7.969536 TCTTTTTCTAAGATTGTGGTCTGAG 57.030 36.000 0.00 0.00 0.00 3.35
154 155 7.993183 AGTTCTTTTTCTAAGATTGTGGTCTGA 59.007 33.333 0.00 0.00 0.00 3.27
155 156 8.159344 AGTTCTTTTTCTAAGATTGTGGTCTG 57.841 34.615 0.00 0.00 0.00 3.51
156 157 7.171678 CGAGTTCTTTTTCTAAGATTGTGGTCT 59.828 37.037 0.00 0.00 0.00 3.85
157 158 7.291567 CGAGTTCTTTTTCTAAGATTGTGGTC 58.708 38.462 0.00 0.00 0.00 4.02
158 159 6.204882 CCGAGTTCTTTTTCTAAGATTGTGGT 59.795 38.462 0.00 0.00 0.00 4.16
159 160 6.603095 CCGAGTTCTTTTTCTAAGATTGTGG 58.397 40.000 0.00 0.00 0.00 4.17
160 161 6.080406 GCCGAGTTCTTTTTCTAAGATTGTG 58.920 40.000 0.00 0.00 0.00 3.33
161 162 5.763204 TGCCGAGTTCTTTTTCTAAGATTGT 59.237 36.000 0.00 0.00 0.00 2.71
162 163 6.241207 TGCCGAGTTCTTTTTCTAAGATTG 57.759 37.500 0.00 0.00 0.00 2.67
163 164 5.106515 GCTGCCGAGTTCTTTTTCTAAGATT 60.107 40.000 0.00 0.00 0.00 2.40
164 165 4.393371 GCTGCCGAGTTCTTTTTCTAAGAT 59.607 41.667 0.00 0.00 0.00 2.40
165 166 3.746492 GCTGCCGAGTTCTTTTTCTAAGA 59.254 43.478 0.00 0.00 0.00 2.10
166 167 3.748568 AGCTGCCGAGTTCTTTTTCTAAG 59.251 43.478 0.00 0.00 0.00 2.18
167 168 3.498397 CAGCTGCCGAGTTCTTTTTCTAA 59.502 43.478 0.00 0.00 0.00 2.10
168 169 3.067106 CAGCTGCCGAGTTCTTTTTCTA 58.933 45.455 0.00 0.00 0.00 2.10
169 170 1.876156 CAGCTGCCGAGTTCTTTTTCT 59.124 47.619 0.00 0.00 0.00 2.52
170 171 1.873591 TCAGCTGCCGAGTTCTTTTTC 59.126 47.619 9.47 0.00 0.00 2.29
171 172 1.967319 TCAGCTGCCGAGTTCTTTTT 58.033 45.000 9.47 0.00 0.00 1.94
172 173 2.191128 ATCAGCTGCCGAGTTCTTTT 57.809 45.000 9.47 0.00 0.00 2.27
173 174 2.079925 GAATCAGCTGCCGAGTTCTTT 58.920 47.619 9.47 0.00 0.00 2.52
174 175 1.277557 AGAATCAGCTGCCGAGTTCTT 59.722 47.619 9.47 0.00 0.00 2.52
175 176 0.901124 AGAATCAGCTGCCGAGTTCT 59.099 50.000 9.47 10.05 0.00 3.01
176 177 1.005340 CAGAATCAGCTGCCGAGTTC 58.995 55.000 9.47 7.99 0.00 3.01
177 178 0.392193 CCAGAATCAGCTGCCGAGTT 60.392 55.000 9.47 0.00 34.56 3.01
178 179 1.220206 CCAGAATCAGCTGCCGAGT 59.780 57.895 9.47 0.00 34.56 4.18
179 180 1.523258 CCCAGAATCAGCTGCCGAG 60.523 63.158 9.47 0.00 34.56 4.63
180 181 2.293318 ACCCAGAATCAGCTGCCGA 61.293 57.895 9.47 0.00 34.56 5.54
181 182 2.110967 CACCCAGAATCAGCTGCCG 61.111 63.158 9.47 0.00 34.56 5.69
182 183 0.106819 ATCACCCAGAATCAGCTGCC 60.107 55.000 9.47 0.28 34.56 4.85
183 184 1.674962 GAATCACCCAGAATCAGCTGC 59.325 52.381 9.47 0.00 34.56 5.25
184 185 2.943690 CAGAATCACCCAGAATCAGCTG 59.056 50.000 7.63 7.63 35.66 4.24
185 186 2.683152 GCAGAATCACCCAGAATCAGCT 60.683 50.000 0.00 0.00 36.19 4.24
186 187 1.674962 GCAGAATCACCCAGAATCAGC 59.325 52.381 0.00 0.00 32.57 4.26
187 188 2.943690 CTGCAGAATCACCCAGAATCAG 59.056 50.000 8.42 0.00 0.00 2.90
188 189 2.356432 CCTGCAGAATCACCCAGAATCA 60.356 50.000 17.39 0.00 0.00 2.57
189 190 2.092753 TCCTGCAGAATCACCCAGAATC 60.093 50.000 17.39 0.00 0.00 2.52
190 191 1.918262 TCCTGCAGAATCACCCAGAAT 59.082 47.619 17.39 0.00 0.00 2.40
191 192 1.361204 TCCTGCAGAATCACCCAGAA 58.639 50.000 17.39 0.00 0.00 3.02
192 193 1.280133 CTTCCTGCAGAATCACCCAGA 59.720 52.381 17.39 0.00 32.82 3.86
193 194 1.747709 CTTCCTGCAGAATCACCCAG 58.252 55.000 17.39 0.00 32.82 4.45
194 195 0.322816 GCTTCCTGCAGAATCACCCA 60.323 55.000 17.39 0.00 42.31 4.51
195 196 0.034670 AGCTTCCTGCAGAATCACCC 60.035 55.000 17.39 0.00 45.94 4.61
196 197 1.093159 CAGCTTCCTGCAGAATCACC 58.907 55.000 17.39 0.00 45.94 4.02
197 198 2.105006 TCAGCTTCCTGCAGAATCAC 57.895 50.000 17.39 0.05 45.94 3.06
198 199 3.361281 AATCAGCTTCCTGCAGAATCA 57.639 42.857 17.39 0.00 45.94 2.57
199 200 4.421948 CAAAATCAGCTTCCTGCAGAATC 58.578 43.478 17.39 3.56 45.94 2.52
200 201 3.194968 CCAAAATCAGCTTCCTGCAGAAT 59.805 43.478 17.39 0.00 45.94 2.40
201 202 2.559668 CCAAAATCAGCTTCCTGCAGAA 59.440 45.455 17.39 6.85 45.94 3.02
202 203 2.165167 CCAAAATCAGCTTCCTGCAGA 58.835 47.619 17.39 0.00 45.94 4.26
203 204 1.203994 CCCAAAATCAGCTTCCTGCAG 59.796 52.381 6.78 6.78 45.94 4.41
204 205 1.259609 CCCAAAATCAGCTTCCTGCA 58.740 50.000 0.00 0.00 45.94 4.41
205 206 0.533951 CCCCAAAATCAGCTTCCTGC 59.466 55.000 0.00 0.00 39.00 4.85
206 207 0.533951 GCCCCAAAATCAGCTTCCTG 59.466 55.000 0.00 0.00 40.54 3.86
207 208 0.114954 TGCCCCAAAATCAGCTTCCT 59.885 50.000 0.00 0.00 0.00 3.36
208 209 0.975887 TTGCCCCAAAATCAGCTTCC 59.024 50.000 0.00 0.00 0.00 3.46
209 210 1.620323 ACTTGCCCCAAAATCAGCTTC 59.380 47.619 0.00 0.00 0.00 3.86
210 211 1.720781 ACTTGCCCCAAAATCAGCTT 58.279 45.000 0.00 0.00 0.00 3.74
211 212 1.720781 AACTTGCCCCAAAATCAGCT 58.279 45.000 0.00 0.00 0.00 4.24
212 213 2.037641 AGAAACTTGCCCCAAAATCAGC 59.962 45.455 0.00 0.00 0.00 4.26
213 214 3.321682 TGAGAAACTTGCCCCAAAATCAG 59.678 43.478 0.00 0.00 0.00 2.90
214 215 3.303938 TGAGAAACTTGCCCCAAAATCA 58.696 40.909 0.00 0.00 0.00 2.57
215 216 4.335400 TTGAGAAACTTGCCCCAAAATC 57.665 40.909 0.00 0.00 0.00 2.17
216 217 4.769345 TTTGAGAAACTTGCCCCAAAAT 57.231 36.364 0.00 0.00 0.00 1.82
217 218 4.512484 CTTTTGAGAAACTTGCCCCAAAA 58.488 39.130 0.00 0.00 33.96 2.44
218 219 3.681313 GCTTTTGAGAAACTTGCCCCAAA 60.681 43.478 0.00 0.00 0.00 3.28
219 220 2.158971 GCTTTTGAGAAACTTGCCCCAA 60.159 45.455 0.00 0.00 0.00 4.12
220 221 1.412343 GCTTTTGAGAAACTTGCCCCA 59.588 47.619 0.00 0.00 0.00 4.96
221 222 1.688735 AGCTTTTGAGAAACTTGCCCC 59.311 47.619 0.00 0.00 0.00 5.80
222 223 2.362077 TCAGCTTTTGAGAAACTTGCCC 59.638 45.455 0.00 0.00 0.00 5.36
223 224 3.715628 TCAGCTTTTGAGAAACTTGCC 57.284 42.857 0.00 0.00 0.00 4.52
224 225 6.594284 AAAATCAGCTTTTGAGAAACTTGC 57.406 33.333 0.00 0.00 39.68 4.01
235 236 8.735692 TTTTTGATTCTCCAAAATCAGCTTTT 57.264 26.923 0.00 0.00 44.23 2.27
236 237 7.041576 GCTTTTTGATTCTCCAAAATCAGCTTT 60.042 33.333 13.89 0.00 44.23 3.51
237 238 6.426025 GCTTTTTGATTCTCCAAAATCAGCTT 59.574 34.615 13.89 0.00 44.23 3.74
238 239 5.930569 GCTTTTTGATTCTCCAAAATCAGCT 59.069 36.000 13.89 0.00 44.23 4.24
239 240 5.930569 AGCTTTTTGATTCTCCAAAATCAGC 59.069 36.000 13.54 13.54 44.23 4.26
240 241 7.149973 TCAGCTTTTTGATTCTCCAAAATCAG 58.850 34.615 0.00 0.00 44.23 2.90
241 242 7.053316 TCAGCTTTTTGATTCTCCAAAATCA 57.947 32.000 0.00 0.00 43.12 2.57
242 243 7.951530 TTCAGCTTTTTGATTCTCCAAAATC 57.048 32.000 0.00 0.00 43.12 2.17
243 244 8.735692 TTTTCAGCTTTTTGATTCTCCAAAAT 57.264 26.923 0.00 0.00 43.12 1.82
244 245 8.040132 TCTTTTCAGCTTTTTGATTCTCCAAAA 58.960 29.630 0.00 0.00 42.30 2.44
245 246 7.555087 TCTTTTCAGCTTTTTGATTCTCCAAA 58.445 30.769 0.00 0.00 34.56 3.28
246 247 7.111247 TCTTTTCAGCTTTTTGATTCTCCAA 57.889 32.000 0.00 0.00 0.00 3.53
247 248 6.713762 TCTTTTCAGCTTTTTGATTCTCCA 57.286 33.333 0.00 0.00 0.00 3.86
248 249 8.493547 CAATTCTTTTCAGCTTTTTGATTCTCC 58.506 33.333 0.00 0.00 0.00 3.71
249 250 8.493547 CCAATTCTTTTCAGCTTTTTGATTCTC 58.506 33.333 0.00 0.00 0.00 2.87
250 251 7.443272 CCCAATTCTTTTCAGCTTTTTGATTCT 59.557 33.333 0.00 0.00 0.00 2.40
251 252 7.578852 CCCAATTCTTTTCAGCTTTTTGATTC 58.421 34.615 0.00 0.00 0.00 2.52
252 253 6.016860 GCCCAATTCTTTTCAGCTTTTTGATT 60.017 34.615 0.00 0.00 0.00 2.57
253 254 5.471116 GCCCAATTCTTTTCAGCTTTTTGAT 59.529 36.000 0.00 0.00 0.00 2.57
254 255 4.815846 GCCCAATTCTTTTCAGCTTTTTGA 59.184 37.500 0.00 0.00 0.00 2.69
255 256 4.023792 GGCCCAATTCTTTTCAGCTTTTTG 60.024 41.667 0.00 0.00 0.00 2.44
256 257 4.136796 GGCCCAATTCTTTTCAGCTTTTT 58.863 39.130 0.00 0.00 0.00 1.94
257 258 3.496692 GGGCCCAATTCTTTTCAGCTTTT 60.497 43.478 19.95 0.00 0.00 2.27
258 259 2.038952 GGGCCCAATTCTTTTCAGCTTT 59.961 45.455 19.95 0.00 0.00 3.51
259 260 1.625315 GGGCCCAATTCTTTTCAGCTT 59.375 47.619 19.95 0.00 0.00 3.74
260 261 1.203225 AGGGCCCAATTCTTTTCAGCT 60.203 47.619 27.56 0.00 0.00 4.24
261 262 1.269958 AGGGCCCAATTCTTTTCAGC 58.730 50.000 27.56 0.00 0.00 4.26
262 263 4.356405 AAAAGGGCCCAATTCTTTTCAG 57.644 40.909 27.56 0.00 36.37 3.02
263 264 4.787135 AAAAAGGGCCCAATTCTTTTCA 57.213 36.364 27.56 0.00 39.06 2.69
324 325 1.375268 GCTGCTCGAGCCTCAAGTT 60.375 57.895 33.23 0.00 42.54 2.66
333 334 1.558741 GAGTTCATGAGCTGCTCGAG 58.441 55.000 23.35 17.88 32.35 4.04
390 391 5.248477 ACCATGGACCCATATGAGTACATAC 59.752 44.000 21.47 0.00 41.03 2.39
411 420 0.690762 GCCAAACCTCTAGTCCACCA 59.309 55.000 0.00 0.00 0.00 4.17
602 874 8.722480 TCTTCAGACGAAATATGATCACAAAT 57.278 30.769 0.00 0.00 0.00 2.32
603 875 7.201556 GCTCTTCAGACGAAATATGATCACAAA 60.202 37.037 0.00 0.00 0.00 2.83
640 912 5.346181 AGTACTGAAGAGAAATGGTAGCC 57.654 43.478 0.00 0.00 0.00 3.93
723 996 0.899717 TGCTGGTCCCAATGCCTTTC 60.900 55.000 0.00 0.00 0.00 2.62
759 1041 4.048504 CAATGTTTTCTTGAACCGGTTCC 58.951 43.478 37.66 23.43 38.77 3.62
764 1046 5.108385 AGCTACAATGTTTTCTTGAACCG 57.892 39.130 0.00 0.00 0.00 4.44
775 1057 5.710513 TTGCTGATTCAAGCTACAATGTT 57.289 34.783 0.00 0.00 43.90 2.71
1190 1488 8.570068 ACTAAAAGTTTGACCACTAACTGAAA 57.430 30.769 0.00 0.00 40.08 2.69
1226 1524 7.502561 ACATGAAAAGGTATACAGGAATAAGCC 59.497 37.037 5.01 0.00 0.00 4.35
1268 1568 5.266733 TCAAGAGAGCAACAAAGCAAAAT 57.733 34.783 0.00 0.00 36.85 1.82
1537 1897 8.089625 TCCAAACAGGACATATAGATTCTTCA 57.910 34.615 0.00 0.00 43.07 3.02
1556 1925 7.286316 ACCATCTCTATCATTCCAAATCCAAAC 59.714 37.037 0.00 0.00 0.00 2.93
1564 1934 6.493166 ACCAAAACCATCTCTATCATTCCAA 58.507 36.000 0.00 0.00 0.00 3.53
1565 1935 6.078456 ACCAAAACCATCTCTATCATTCCA 57.922 37.500 0.00 0.00 0.00 3.53
1566 1936 8.571336 CATTACCAAAACCATCTCTATCATTCC 58.429 37.037 0.00 0.00 0.00 3.01
1567 1937 8.078596 GCATTACCAAAACCATCTCTATCATTC 58.921 37.037 0.00 0.00 0.00 2.67
1568 1938 7.014615 GGCATTACCAAAACCATCTCTATCATT 59.985 37.037 0.00 0.00 38.86 2.57
1750 2132 5.629435 CGTGTATATGTAGTACATGGTGCAG 59.371 44.000 23.36 8.97 39.53 4.41
2090 2474 9.656040 TTTCTAGTATAATAAAAGCACGGACAA 57.344 29.630 0.00 0.00 0.00 3.18
2368 2807 6.003326 TGAAAGCAGGTCAAATCAGTATCAA 58.997 36.000 0.00 0.00 0.00 2.57
2416 2859 0.878416 TTACCATGTTCCGCTGCAAC 59.122 50.000 0.00 0.00 0.00 4.17
2432 2879 9.567848 TTCGATATTTTGAAGCCTTCATTTTAC 57.432 29.630 8.18 0.00 39.84 2.01
2443 2891 7.117956 GGGGTAGATACTTCGATATTTTGAAGC 59.882 40.741 11.80 0.00 44.29 3.86
2467 2915 8.394040 AGGATAAAATGATACTAATTCAGGGGG 58.606 37.037 0.00 0.00 0.00 5.40
2497 2946 2.679837 CCCGAGAAATCACAATCACCTG 59.320 50.000 0.00 0.00 0.00 4.00
2515 2964 3.111939 CTCTCGACTGCCTACCCG 58.888 66.667 0.00 0.00 0.00 5.28
2527 2976 5.636965 CAGGATTTAATGTATCAGGCTCTCG 59.363 44.000 0.00 0.00 0.00 4.04
2559 3010 3.573491 GCTACGCCGCCCACAATC 61.573 66.667 0.00 0.00 0.00 2.67
2771 3226 2.983192 TCAGGAAATTGGTACCCACTCA 59.017 45.455 10.07 0.00 30.78 3.41
2790 3245 4.588899 CCATCCTGAACATTTGTACCTCA 58.411 43.478 0.00 0.00 0.00 3.86
2827 3291 2.762472 GAGATGTGCAACGAAATCACG 58.238 47.619 0.00 0.00 42.39 4.35
2929 3393 1.202627 GCTGCTAGCTAGGTTCATGCT 60.203 52.381 22.10 0.00 38.45 3.79
2964 3437 0.108186 CTTCACAGCCAGCATACGGA 60.108 55.000 0.00 0.00 0.00 4.69
2965 3438 1.709147 GCTTCACAGCCAGCATACGG 61.709 60.000 0.00 0.00 40.61 4.02
2966 3439 1.717937 GCTTCACAGCCAGCATACG 59.282 57.895 0.00 0.00 40.61 3.06
2992 3465 3.963428 ACTACACTTAACAGGAGGCTG 57.037 47.619 0.00 0.00 0.00 4.85
3069 3554 6.791887 TCTGAGAACAAAATGCTCTACTTG 57.208 37.500 0.00 0.00 0.00 3.16
3079 3564 6.579666 TGCAGCTTATTCTGAGAACAAAAT 57.420 33.333 0.00 0.00 36.19 1.82
3088 3573 9.926158 TCAATTAAAATTTGCAGCTTATTCTGA 57.074 25.926 0.00 0.00 36.19 3.27
3114 3599 5.175859 TCGATCAAAGAGCCTACGAAAATT 58.824 37.500 0.00 0.00 0.00 1.82
3123 3608 3.118482 ACATGACATCGATCAAAGAGCCT 60.118 43.478 0.00 0.00 30.82 4.58
3124 3609 3.201290 ACATGACATCGATCAAAGAGCC 58.799 45.455 0.00 0.00 30.82 4.70
3125 3610 4.871993 AACATGACATCGATCAAAGAGC 57.128 40.909 0.00 0.00 30.82 4.09
3126 3611 6.174451 ACAAACATGACATCGATCAAAGAG 57.826 37.500 0.00 0.00 30.82 2.85
3127 3612 6.558771 AACAAACATGACATCGATCAAAGA 57.441 33.333 0.00 0.00 30.82 2.52
3128 3613 6.857451 TGAAACAAACATGACATCGATCAAAG 59.143 34.615 0.00 0.00 30.82 2.77
3140 3641 5.334802 CGCAGGTTAGATGAAACAAACATGA 60.335 40.000 0.00 0.00 36.11 3.07
3142 3643 4.759693 TCGCAGGTTAGATGAAACAAACAT 59.240 37.500 0.00 0.00 0.00 2.71
3156 3657 0.539986 GGGATCAAGGTCGCAGGTTA 59.460 55.000 0.00 0.00 0.00 2.85
3166 3667 1.076485 CCAAGCTGGGGGATCAAGG 60.076 63.158 0.00 0.00 32.67 3.61
3167 3668 1.755783 GCCAAGCTGGGGGATCAAG 60.756 63.158 9.87 0.00 38.19 3.02
3198 3699 2.154567 ATGGAGAATTGCATGCCAGT 57.845 45.000 16.68 2.44 33.70 4.00
3202 3703 5.638657 TGTTTGTTTATGGAGAATTGCATGC 59.361 36.000 11.82 11.82 35.96 4.06
3217 3718 3.677424 GCCAGCACCAACTTGTTTGTTTA 60.677 43.478 0.00 0.00 32.71 2.01
3225 3726 1.373748 GCATGCCAGCACCAACTTG 60.374 57.895 6.36 0.00 0.00 3.16
3248 3749 0.395686 ATCATCTGTGCCGCTGCTAT 59.604 50.000 0.70 0.00 38.71 2.97
3255 3756 2.477825 CTCCAGTAATCATCTGTGCCG 58.522 52.381 0.00 0.00 0.00 5.69
3315 3822 5.130350 TGAAAGACCTCAACTCCGATTTTT 58.870 37.500 0.00 0.00 0.00 1.94
3322 3829 9.196552 CATTTATTTTTGAAAGACCTCAACTCC 57.803 33.333 0.00 0.00 35.07 3.85
3377 3884 5.067936 CCCGTAGCTAGAAGATCAAGAAGAA 59.932 44.000 0.00 0.00 0.00 2.52
3378 3885 4.580995 CCCGTAGCTAGAAGATCAAGAAGA 59.419 45.833 0.00 0.00 0.00 2.87
3379 3886 4.261825 CCCCGTAGCTAGAAGATCAAGAAG 60.262 50.000 0.00 0.00 0.00 2.85
3409 3916 4.609783 CGTTCAGTCGTTGGGTGAAAATAC 60.610 45.833 0.00 0.00 32.15 1.89
3410 3917 3.495377 CGTTCAGTCGTTGGGTGAAAATA 59.505 43.478 0.00 0.00 32.15 1.40
3417 3924 1.366366 CTCCGTTCAGTCGTTGGGT 59.634 57.895 0.00 0.00 0.00 4.51
3435 3942 4.509600 GCTATCTTATCCTCACAACAGTGC 59.490 45.833 0.00 0.00 33.28 4.40
3442 3949 4.809193 ACTCCAGCTATCTTATCCTCACA 58.191 43.478 0.00 0.00 0.00 3.58
3443 3950 5.538433 AGAACTCCAGCTATCTTATCCTCAC 59.462 44.000 0.00 0.00 0.00 3.51
3445 3952 5.538433 ACAGAACTCCAGCTATCTTATCCTC 59.462 44.000 0.00 0.00 0.00 3.71
3455 4000 1.833630 CCATCCACAGAACTCCAGCTA 59.166 52.381 0.00 0.00 0.00 3.32
3463 4008 2.943033 CGGGTTAATCCATCCACAGAAC 59.057 50.000 5.41 0.00 38.11 3.01
3470 4015 1.228459 GGGCCGGGTTAATCCATCC 60.228 63.158 2.18 4.68 38.11 3.51
3507 4052 2.471749 CGTGCGACAAGTAATTCGGAAC 60.472 50.000 0.00 0.00 37.32 3.62
3508 4053 1.722464 CGTGCGACAAGTAATTCGGAA 59.278 47.619 0.00 0.00 37.32 4.30
3509 4054 1.336148 ACGTGCGACAAGTAATTCGGA 60.336 47.619 0.00 0.00 35.73 4.55
3510 4055 1.065358 ACGTGCGACAAGTAATTCGG 58.935 50.000 0.00 0.00 35.73 4.30
3511 4056 3.301579 CCATACGTGCGACAAGTAATTCG 60.302 47.826 0.00 0.00 32.82 3.34
3512 4057 3.861113 TCCATACGTGCGACAAGTAATTC 59.139 43.478 0.00 0.00 32.82 2.17
3513 4058 3.852286 TCCATACGTGCGACAAGTAATT 58.148 40.909 0.00 0.00 32.82 1.40
3514 4059 3.513680 TCCATACGTGCGACAAGTAAT 57.486 42.857 0.00 0.00 32.82 1.89
3515 4060 3.119424 TCATCCATACGTGCGACAAGTAA 60.119 43.478 0.00 0.00 32.82 2.24
3516 4061 2.424246 TCATCCATACGTGCGACAAGTA 59.576 45.455 0.00 7.72 33.49 2.24
3517 4062 1.203758 TCATCCATACGTGCGACAAGT 59.796 47.619 0.00 0.00 0.00 3.16
3518 4063 1.921243 TCATCCATACGTGCGACAAG 58.079 50.000 0.00 0.00 0.00 3.16
3519 4064 2.595124 ATCATCCATACGTGCGACAA 57.405 45.000 0.00 0.00 0.00 3.18
3520 4065 3.377439 GTTATCATCCATACGTGCGACA 58.623 45.455 0.00 0.00 0.00 4.35
3521 4066 2.729882 GGTTATCATCCATACGTGCGAC 59.270 50.000 0.00 0.00 0.00 5.19
3522 4067 2.362717 TGGTTATCATCCATACGTGCGA 59.637 45.455 0.00 0.00 0.00 5.10
3523 4068 2.731451 CTGGTTATCATCCATACGTGCG 59.269 50.000 0.00 0.00 34.26 5.34
3524 4069 3.067106 CCTGGTTATCATCCATACGTGC 58.933 50.000 0.00 0.00 34.26 5.34
3525 4070 4.336889 ACCTGGTTATCATCCATACGTG 57.663 45.455 0.00 0.00 34.26 4.49
3526 4071 4.897076 TGTACCTGGTTATCATCCATACGT 59.103 41.667 3.84 0.00 34.26 3.57
3527 4072 5.462530 TGTACCTGGTTATCATCCATACG 57.537 43.478 3.84 0.00 34.26 3.06
3528 4073 5.701290 GCTTGTACCTGGTTATCATCCATAC 59.299 44.000 3.84 0.00 34.26 2.39
3529 4074 5.606749 AGCTTGTACCTGGTTATCATCCATA 59.393 40.000 3.84 0.00 34.26 2.74
3530 4075 4.413520 AGCTTGTACCTGGTTATCATCCAT 59.586 41.667 3.84 0.00 34.26 3.41
3531 4076 3.780294 AGCTTGTACCTGGTTATCATCCA 59.220 43.478 3.84 0.00 0.00 3.41
3532 4077 4.101741 AGAGCTTGTACCTGGTTATCATCC 59.898 45.833 3.84 0.00 0.00 3.51
3533 4078 5.283457 AGAGCTTGTACCTGGTTATCATC 57.717 43.478 3.84 0.00 0.00 2.92
3534 4079 4.202161 CGAGAGCTTGTACCTGGTTATCAT 60.202 45.833 3.84 0.00 0.00 2.45
3535 4080 3.130516 CGAGAGCTTGTACCTGGTTATCA 59.869 47.826 3.84 0.00 0.00 2.15
3536 4081 3.130693 ACGAGAGCTTGTACCTGGTTATC 59.869 47.826 3.84 0.00 0.00 1.75
3537 4082 3.097614 ACGAGAGCTTGTACCTGGTTAT 58.902 45.455 3.84 0.00 0.00 1.89
3538 4083 2.490903 GACGAGAGCTTGTACCTGGTTA 59.509 50.000 3.84 0.00 0.00 2.85
3539 4084 1.272769 GACGAGAGCTTGTACCTGGTT 59.727 52.381 3.84 0.00 0.00 3.67
3540 4085 0.889306 GACGAGAGCTTGTACCTGGT 59.111 55.000 4.05 4.05 0.00 4.00
3541 4086 0.173708 GGACGAGAGCTTGTACCTGG 59.826 60.000 0.00 0.00 0.00 4.45
3542 4087 1.133407 GAGGACGAGAGCTTGTACCTG 59.867 57.143 11.28 0.00 30.12 4.00
3543 4088 1.465794 GAGGACGAGAGCTTGTACCT 58.534 55.000 0.00 7.95 31.56 3.08
3544 4089 0.099082 CGAGGACGAGAGCTTGTACC 59.901 60.000 0.00 0.00 42.66 3.34
3545 4090 0.803740 ACGAGGACGAGAGCTTGTAC 59.196 55.000 0.00 0.00 42.66 2.90
3546 4091 2.093816 TCTACGAGGACGAGAGCTTGTA 60.094 50.000 0.00 0.00 42.66 2.41
3547 4092 1.088306 CTACGAGGACGAGAGCTTGT 58.912 55.000 0.00 0.00 42.66 3.16
3570 4115 6.593770 TGTATACATGTGTGTGGTTTCTGATC 59.406 38.462 9.11 0.00 39.39 2.92
3571 4116 6.472016 TGTATACATGTGTGTGGTTTCTGAT 58.528 36.000 9.11 0.00 39.39 2.90
3648 4193 5.174395 TGTGTAACATTGCTGTTGCTTTTT 58.826 33.333 8.08 0.00 45.67 1.94
3649 4194 4.753233 TGTGTAACATTGCTGTTGCTTTT 58.247 34.783 8.08 0.00 45.67 2.27
3650 4195 4.383850 TGTGTAACATTGCTGTTGCTTT 57.616 36.364 8.08 0.00 45.67 3.51
3659 4204 7.748333 GCAGTGACTGTCTGTGTAACATTGC 62.748 48.000 14.82 0.00 39.13 3.56
3660 4205 4.319046 GCAGTGACTGTCTGTGTAACATTG 60.319 45.833 14.82 0.00 39.13 2.82
3661 4206 3.809832 GCAGTGACTGTCTGTGTAACATT 59.190 43.478 14.82 0.00 39.13 2.71
3662 4207 3.393800 GCAGTGACTGTCTGTGTAACAT 58.606 45.455 14.82 0.00 39.13 2.71
3663 4208 2.483013 GGCAGTGACTGTCTGTGTAACA 60.483 50.000 14.82 0.00 38.05 2.41
3664 4209 2.135933 GGCAGTGACTGTCTGTGTAAC 58.864 52.381 14.82 0.00 32.76 2.50
3665 4210 1.760029 TGGCAGTGACTGTCTGTGTAA 59.240 47.619 18.84 0.00 36.97 2.41
3666 4211 1.408969 TGGCAGTGACTGTCTGTGTA 58.591 50.000 18.84 0.00 36.97 2.90
3667 4212 0.541392 TTGGCAGTGACTGTCTGTGT 59.459 50.000 18.84 0.00 36.97 3.72
3668 4213 1.202568 TCTTGGCAGTGACTGTCTGTG 60.203 52.381 18.84 8.33 36.97 3.66
3669 4214 1.069823 CTCTTGGCAGTGACTGTCTGT 59.930 52.381 18.84 0.00 36.97 3.41
3670 4215 1.607509 CCTCTTGGCAGTGACTGTCTG 60.608 57.143 18.84 11.10 36.97 3.51
3671 4216 0.683973 CCTCTTGGCAGTGACTGTCT 59.316 55.000 18.84 0.00 36.97 3.41
3672 4217 3.223661 CCTCTTGGCAGTGACTGTC 57.776 57.895 10.81 10.81 36.52 3.51
3692 4237 0.870307 AGAGTGTGTTGACGCGTGTC 60.870 55.000 20.70 22.00 45.71 3.67
3693 4238 0.459585 AAGAGTGTGTTGACGCGTGT 60.460 50.000 20.70 0.00 37.69 4.49
3694 4239 0.650512 AAAGAGTGTGTTGACGCGTG 59.349 50.000 20.70 0.00 37.69 5.34
3695 4240 0.928229 GAAAGAGTGTGTTGACGCGT 59.072 50.000 13.85 13.85 37.69 6.01
3696 4241 0.927537 TGAAAGAGTGTGTTGACGCG 59.072 50.000 3.53 3.53 37.69 6.01
3697 4242 1.663643 TGTGAAAGAGTGTGTTGACGC 59.336 47.619 0.00 0.00 0.00 5.19
3698 4243 3.303329 CCATGTGAAAGAGTGTGTTGACG 60.303 47.826 0.00 0.00 0.00 4.35
3699 4244 3.548818 GCCATGTGAAAGAGTGTGTTGAC 60.549 47.826 0.00 0.00 0.00 3.18
3700 4245 2.618241 GCCATGTGAAAGAGTGTGTTGA 59.382 45.455 0.00 0.00 0.00 3.18
3701 4246 2.358582 TGCCATGTGAAAGAGTGTGTTG 59.641 45.455 0.00 0.00 0.00 3.33
3702 4247 2.620115 CTGCCATGTGAAAGAGTGTGTT 59.380 45.455 0.00 0.00 0.00 3.32
3703 4248 2.224606 CTGCCATGTGAAAGAGTGTGT 58.775 47.619 0.00 0.00 0.00 3.72
3704 4249 1.068748 GCTGCCATGTGAAAGAGTGTG 60.069 52.381 0.00 0.00 0.00 3.82
3705 4250 1.242076 GCTGCCATGTGAAAGAGTGT 58.758 50.000 0.00 0.00 0.00 3.55
3706 4251 0.524862 GGCTGCCATGTGAAAGAGTG 59.475 55.000 15.17 0.00 0.00 3.51
3707 4252 0.610232 GGGCTGCCATGTGAAAGAGT 60.610 55.000 22.05 0.00 0.00 3.24
3708 4253 0.609957 TGGGCTGCCATGTGAAAGAG 60.610 55.000 22.05 0.00 0.00 2.85
3709 4254 0.609957 CTGGGCTGCCATGTGAAAGA 60.610 55.000 22.05 0.00 0.00 2.52
3710 4255 0.896940 ACTGGGCTGCCATGTGAAAG 60.897 55.000 22.05 8.00 0.00 2.62
3711 4256 1.153524 ACTGGGCTGCCATGTGAAA 59.846 52.632 22.05 0.00 0.00 2.69
3712 4257 1.604308 CACTGGGCTGCCATGTGAA 60.604 57.895 27.79 5.60 0.00 3.18
3713 4258 2.034532 CACTGGGCTGCCATGTGA 59.965 61.111 27.79 5.65 0.00 3.58
3714 4259 3.066190 CCACTGGGCTGCCATGTG 61.066 66.667 26.03 26.03 0.00 3.21
3724 4269 1.601759 CTGTGACCTTGCCACTGGG 60.602 63.158 0.00 0.00 35.66 4.45
3725 4270 4.069869 CTGTGACCTTGCCACTGG 57.930 61.111 0.00 0.00 35.66 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.