>input_sequence_44287
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-ATGGCTAGTGCGGAGGATGTGAAGCAGCGGCAGGTTGTTGAAGACCGTGCAAGAAATATTAGCCACAATGTACGGTGCA
CTGAGTGTGGCAGCCAGTCCATTGAAGATTCGCAAGCAGATGTTGCAGTTCTCCTTAGAAGGGTACTTTTC-GTTCTATA
-ACCTTGTGATGATTGGT--------------TGCCTGACCTTGTTGTTTCAGTTAGTGGTCAAACTTTTAGTAGCAGAG
ATTGGC-TT-ATTCCTGTATACCTTTTCATGTTTCCACAACATCCAAATTTTGCTTTGTTGCTCTCTTGATCTTAACAAG
ACCTAACTAAGATTGGAAATTTGATAACACTTTTAACTGAGGTAACACTTGTACTTGAGACCTTGTACTGATCAATACAA
CAACAACAAAGCCTTTCAGTCCCAAACAAGTTGGGGTAGGCTCTAGGACTGATCAATAATGACATAAAATAAAATGTGTT
CACC------------------------------------------------------------GGCACCCAATAGTTAA
ATGCAAAATAGGGTTGAGAAACTTGAAATGATATTTGCTACTATCAATTTTTTTTTTGAAGAA---------TCTATATG
TCCTG-TTTGGATTTGGAATGATAGAGATGGTTTTGGTAATGCCGCAACTGGTTTGGTTCTTCGATTATATACATTTGCG
TCCTTTTTACTTG-ACTAGGTTTCTTAGACTTGGATGATATTTC----------TGCCTATTCAGCTATATTAAATTTAC
ATTACCTTTCACTGTACCAGAACACTGTTGTCTGATTCACAAGC-ATTTATCTGCACCATGTACTACATATACACGAGAA
AAAAATTAATCTTGAGTTCTCAACGTCAATAAAGGCACTTGGTTTATATGCTTTAAAGGATTGAAATATTATTGCCTTAC
ACCCAATATGTCATGGGAAGCTTCACGGCCGGACGAACTGACATATGTGTCA--TTTTTGCAGTTAATTCGTGATGAAAT
AAAATCTGGAAAGAGTGATAAGGAGATATACAAAAAACTAGAAGAAGACTTTGGAGAAACAGTTCTATATGCCCCTAAAT
TTGATCTTCAAACTGCTGCCATATGGTTATCACCGGTGAGCCTTAATTATGATTCTTTTTCCATGCTGTTCAATTGTCCG
TGCTTTTATTATACTAGAAATATTATCACTTGCACTTTTTTAGCCTATTATTTGTTCGTTTTATGAATGCATTGTGTGTC
TTGGTGAACCCAAGCATA---TTCCATCATCACAAACTTTTGCATCAAGATGTTTTTCGTAAGT----A-----------
---------CGTGGATGATTCTCTTTCATAGTTACTTGGTGAATTTGCAACCAGTGGAAGT-AAA--ATATTTCAATTCT
TAA-AAAATCTAA----------------------TTCCAGCTGATCCCTTGTTGTAGTTCAATGTAGTCTGTAGAGA--
GATAAAT----TGATACTGATTTGACCTGCTTTCATTTGTGCTTAGTAAAATTATGTTG----TTGCAGCGGAACATGGT
-AAAATGAAGGCTTCAAAATATCGAAGTATCTACCCCCCT-GAATTAGTATCATTTTATCCTGTGCAGGTGATTGTGATT
TCTCGGGTAGGCAGTCGAGAGCCTGATACATTAAATCCT--GTGCAGGTGATTGTGGGCGGCGTAGCAGCTGGTGTGTGG
GCTTACCAAAAGCACAGGCAAAGGACCAACGTTCACATCATGGCT----CTGAACCTCGTCCGAGGGGTTCCCCTGACTC
CAAGGGAGAAGGAGACGATGATCGACATCCTCACGCCGCCCCTGCCGGCAAGGAGGTGGTGGTGGCCTATCAAATGA---
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>chr5A_1_TraesCS5A01G495300
GATTTGCTTGATTGCTGAATGGATGTATGCTCGTTTTCATGCTCATATTCGACATAAATTGTCCAAAGCAACTAGAGTAA
GTCTTAGCAATTCAACACACAGTTTTAGTTCAGGGACATTACAGAAATTTTAGCACACAACTCATCCCATAATCTCAGAC
CACAATCTTAGAAAAAGAACTCGGCAGCTGATTCTGGGTGATTCTGCAGGAAGCTGATTTTGGGGCAAGTTTCTCAAAAG
CTGATTTTGGAGAATCAAAAAGCTGAAAAGAATTGGGCCCTTTTTTCCTCAGATACACTAAGACAAAATTAGAGCTCTAC
TCAGAACTTGAGGCTCGAGCAGCTCATGAACTCCCAGTATGTTGTATAACATTGGTTGACATACGCTTGAGTATGT----
----ACTCATATGGGTCCATGGTGGACTAGAGGTTTGGCGGGCA-TG---ATCTTTAAAGAATGATCTATCATGGATTCT
AGTAGAAAGTATAAGTTATTCTACAAACATTATAGGATATACTGGTCTGAGGGAAAAATAGAAATAAAAATTCACAAT--
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-----------------GCATTTGTTAGTCTGTGAATTTCTAATTAGATTATTCCTGGGACAATAGTAATTCTATTTGTG
ATCATATTTCGTCTGAAGAGCTGCTACTATCGGCTACCATTTCTCTTCAGTACTATAAGAAATATCTGAACTGAACTTCG
TTAT-ATATAATTGCAAAAATCTTTGTGAACCAGCGAAAGGCA---------TTGGGACCAGCAAACCCTATTTTCTTCA
GGAACCGGTTCAAGAAAACATTGTAGCTTGAATCAGCAAAAGACAAGAGTAAAACGTTGCCAAGCTTACTTGATAGTTTA
GTCTTGTCATAGTAACTTAATCCTAATAGTTATGATCTGTTTTATTTGTAGAACTTGGGTGGTATTATTTTGTACATTAA
GTACATAAGTAACATTTTATTTCTTCAGGTTCTTATACAGCTACTTTGTTACAGTTAATACAGATAATATTATCTTGTAC
CATGGCTAGTGCGGAGGATGTGAAGCAGCGGCAGGTTGTTGAAGACCGTGCAAGAAATATTAGCCACAATGTACGGTGCA
CTGAGTGTGGCAGCCAGTCCATTGAAGATTCGCAAGCAGATGTTGCAGTTCTCCTTAGAAGGGTACTTTTC-GTTCTATA
-ACCTTGTGATGATTGGT--------------TGCCTGACCTTGTTGTTTCAGTTAGTGGTCAAACTTTTAGTAGCAGAG
ATTGGC-TT-ATTCCTGTATACCTTTTCATGTTTCCACAACATCCAAATTTTGCTTTGTTGCTCTCTTGATCTTAACAAG
ACCTAACTAAGATTGGAAATTTGATAACACTTTTAACTGAGGTAACACTTGTACTTGAGACCTTGTACTGATCAATACAA
CAACAACAAAGCCTTTCAGTCCCAAACAAGTTGGGGTAGGCTCTAGGACTGATCAATAATGACATAAAATAAAATGTGTT
CACC------------------------------------------------------------GGCACCCAATAGTTAA
ATGCAAAATAGGGTTGAGAAACTTGAAATGATATTTGCTACTATCAATTTTTTTTTTGAAGAA---------TCTATATG
TCCTG-TTTGGATTTGGAATGATAGAGATGGTTTTGGTAATGCCGCAACTGGTTTGGTTCTTCGATTATATACATTTGCG
TCCTTTTTACTTG-ACTAGGTTTCTTAGACTTGGATGATATTTC----------TGCCTATTCAGCTATATTAAATTTAC
ATTACCTTTCACTGTACCAGAACACTGTTGTCTGATTCACAAGC-ATTTATCTGCACCATGTACTACATATACACGAGAA
AAAAATTAATCTTGAGTTCTCAACGTCAATAAAGGCACTTGGTTTATATGCTTTAAAGGATTGAAATATTATTGCCTTAC
ACCCAATATGTCATGGGAAGCTTCACGGCCGGACGAACTGACATATGTGTCA--TTTTTGCAGTTAATTCGTGATGAAAT
AAAATCTGGAAAGAGTGATAAGGAGATATACAAAAAACTAGAAGAAGACTTTGGAGAAACAGTTCTATATGCCCCTAAAT
TTGATCTTCAAACTGCTGCCATATGGTTATCACCGGTGAGCCTTAATTATGATTCTTTTTCCATGCTGTTCAATTGTCCG
TGCTTTTATTATACTAGAAATATTATCACTTGCACTTTTTTAGCCTATTATTTGTTCGTTTTATGAATGCATTGTGTGTC
TTGGTGAACCCAAGCATA---TTCCATCATCACAAACTTTTGCATCAAGATGTTTTTCGTAAGT----A-----------
---------CGTGGATGATTCTCTTTCATAGTTACTTGGTGAATTTGCAACCAGTGGAAGT-AAA--ATATTTCAATTCT
TAA-AAAATCTAA----------------------TTCCAGCTGATCCCTTGTTGTAGTTCAATGTAGTCTGTAGAGA--
GATAAAT----TGATACTGATTTGACCTGCTTTCATTTGTGCTTAGTAAAATTATGTTG----TTGCAGCGGAACATGGT
-AAAATGAAGGCTTCAAAATATCGAAGTATCTACCCCCCT-GAATTAGTATCATTTTATCCTGTGCAGGTGATTGTGATT
TCTCGGGTAGGCAGTCGAGAGCCTGATACATTAAATCCT--GTGCAGGTGATTGTGGGCGGCGTAGCAGCTGGTGTGTGG
GCTTACCAAAAGCACAGGCAAAGGACCAACGTTCACATCATGGCT----CTGAACCTCGTCCGAGGGGTTCCCCTGACTC
CAAGGGAGAAGGAGACGATGATCGACATCCTCACGCCGCCCCTGCCGGCAAGGAGGTGGTGGTGGCCTATCAAATGATGT
TCTTTCATGTCCTTAGACGCGACATTGAGTGGGTACCAATTTCCTGAGGTAC---------AAATGTTCAGGATGGCTGG
AATTTTAGCACGTGATTTCGTTGCACATCTCGCGCCCTGCTTGGAGCTTGGGCTACAGATTTTTTTTCTGGGTTTTATAA
CCGGATGCTTGCGATACCTTGGTGGTTTGTGAAGCATGAACC----TAGCTAGCAGCACATGT-----TGCCTTCCTCCG
TATGCTGGCTGTGAAGCTGAAAAACAGCCTCCTGTT-AAGTGTAGTTTCTTCCCT-----------AAACATGTGGTGTC
ACTGCTGACCCTCTGTGCTAGCAGTCTAGCACACAAGTAGAGCATTTTGTTCTCAGAATAAGCTGCAAATTTTAATTGAA
TTTTCGTAGGCTCTT----------------TGATCGATGTCATGTTTGTTTCATCTAACCTGCGACCTTGATCCCCCAG
CTTGGCGTACTAGATGGTACTGGCATGCAATTCTCCATAAACAAACAAGTTGGTGCTGGCATGCATACATAGCAGCGGCA
CAGATGATTACTGGAGGTTTTCTCTCTTA------ACTAAAGTTCATCGGAGGTTGTAAAAAAAAATCGGAGTTGAGGTC
TTTCAAAAATAAATGAATGTTAAATTAGCTCAAATTCATGTGTTTCTTCTTGATCTTCTAGCTACGGGGCCGCCGGTATT
TTCACCCAACGACTGAACGGAGCACTGTTGTG--------------------------------------AGGATAAGAT
AGCTGGAGTTCTGTGGATGGATTAACCCGGCCCGAAATATATACTTTCTCCGTTCCGAATTACTTGTCGCACGTATGGAT
GATAACCAGGTACAAGCTCTCGTCCTCGTAGAGAGATCAGAAACCACACACATGTATACAGTGCACACATTTGAACAAGT
GCCACCAGCAACAGCAATGTTATACCTGCAAAAAAAAGCAACAGCAATGTTACACAGACAGTCACTGCCAAGAGGCGACA
CGCGTCAACACACTCTTTCACATGGCAGCCCAGTGGCAAGGTCACAG
>chr4B_268
AAGACTTGA-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------CCCTTTTTTCCTTAGATACACTAAGACAAAATTAGAGCTCTAC
TCAGGACTTGAGGTTCGAGCAGCTCATGAGCTTCCAGTATGTTGTATAACATTGGTTGACATGTGCTTGAATATGT----
----ACTCATATGGGTCCACGGTGGACTAGAGGTTTGGCGGGCA-TTTATATCTTTAAAGAATGCTGTG-CAT-GATTCT
AGTAGAAAGTATCGGTTATTCTACAAACATTATAGGATATACTGGGCTGAGGACAAAATA-AATTAAAA-TTCACAAT--
--------------------------------------------------------------------------------
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-----------------GTACTTGTTAGTCTGTGAATTTCTAGTTAGATTATTCTTGGGAAAATAGTAATTCTGCTTGTG
ATCATATTTCATCTAAAGAGCTGCTACTATCTGCTACCATTTCTCTTCAGTACTATAAGAAATATCTGAACACAGTTTCG
TTCTGATATAATTGCAAAAATCTTTGTGAACCAGCAAAAGGAATGTTCCAAGTTGGGACCAGCAAACCCTATTTTCTTCA
TGAACTGGTTCAAGAATACATTGTAGCTTGAATCAGCAAAAGACAAGAGTAAAACTTTGCCAAGCTTACTTGATAGTTTA
GTCTTGTGATAGTAACTTAATCCTAATAGTTATGATCTGTTTTGTTTGTAGAACTTGGGTGGTATTATTTTGTACACTAC
GTACATAAGTAACATTTTATTTCTTCAGGTTCTTATACAGCTACTTTGTTACAGTTAATACAGATAACATTATCTTTTAC
CATGGCTAGTGCGGAGGATGTGAAGCAGCGGCAGGTTGTTGAAGACCGTGCAAGAAATATTAGCCACAATGTACGGTGCA
CTGAGTGTGGCAGCCAGTCCATTGAAGATTCGCAAGCAGATGTTGCAGTTCTCCTTAGAAGGGTACTTTTC-GTTCTATA
-ACCTCGTGATGATTGGT--------------TGCCTGACCTTGTTGGTTCAGTTAGTGGTCAAACTTTTAGTAGCAGAG
ATTTGC-TT-ATTCCTGTATACCTTTTCATGTTTCCACAACATCCAACTTTTGCTTTGTTGCTCTCTTGATCTTAACAAA
ACCTAACTAAGATTGGAAATTTGATAACACTTTTAACTGAGGTAACACTTGTACTTGAGACCTTGTACTGATCAATACAA
CAACAACAAAGCCTTTCAGTCCCAAACAAGTTGGGGTAGGCTCTAGGACTGATCAATAATGACATAAAATAAAATGTGTT
CACC------------------------------------------------------------GGCACCCAATAGTTAA
ATGCAAAATAGGGTTGAGAAACTTGCAATGATATTTGCTACTATCATTTTTTTTTTGAAGAACTACAGTCTGTCTATATG
TCCTT-TTTGGA------ATGATAGAGATGGTTTTGGTAATGCCGCAACTGGTTTGGTTCTTCGATTATATACATTTGCG
TCCTTTTTACTTG-ACTAGGTTTCTTAGACATGGATGATATTTC----------TGCCTATTCAGCTATATTAAATTTAC
ATTACCTTTCGCTGTACCAGAACACTGTTTTCTGATTCACAAGC-ATTTATTTGCACCATGTACTACATATACACGGG-A
AAAAATTAATCTTGAGTTCTCAACGTCAATTAAGGCGCTTGGTTTGTATGCTTTGAAGGATCGAAATATTATTGCCTTGC
ACCCAATATGTCATGGGAAGCTTCACGGCCTCACGAACTGATATATGTGTCA--TTTTTGCAGTTAATTCGTGATGAAAT
AAAATCTGGAAAGAGTGATAAGGAGATATACAAAAAACTAGAAGAAGACTTTGGAGAAACAGTTCTATATGCCCCTAAAT
TTGATCTTCAAACTGCTGCCATATGGTTATCACCGGTGAGCCTTAATTATGATTCTTTTTCCATGCTGTTCAAGTGTCCG
TGCTTTTATTATACTAGAAATATTTTCACTTGCACTTTTTTAGCCTATTATTTGTTCGTTTTATGAATGCATTGCGTGTC
TTGGTGAACCCAAGCATA---TTCCATCATCACAAACTTTTGCGTCAAGATGTTTTTCGTAAGT----A-----------
---------CGTGGATGATTCTCTTTCATAGTTACTTGGTGAATTTGCAACCAGTGGAAGT-AATATATATTTCAATTCT
TAA-AAAATCTAA----------------------TTTCAGCTGATCCCTTGTTGTAGTTCAATGTAGTCTGTAGAGA--
GATAAAA----TGATACTGATTTGCCCTGCTTTTGTTTGTGCTTAGTAAAATTATGTTTTG--CTGCAGCGGAACATGAT
-AAAATGAAAACTTCAAAATATTGAAGTATCTATTCCCCT-GAATTAGTATCATTTTATCCTGTGTAGGTGATTGTGATT
TCTAGGGTAGGCAGTTGAGAGCCTGATACATTAAATCCT--GTGCAGGTCATTGTGGGCGGCGTAGCAGCCGGTGTGTGG
GCTTACCAAAAGCACAGGCAAAGGACCAACGTTCACATCATGGCT----CTGAACCTCGTCCGAGGGGTTCCCCTGACTC
CAAGGGAGAAGGAGACGATGATCGACATCCTCACGCCGCCCCTGCCGGCAAGGAGGTGGTGGTGGCCTCTCAAATGATGT
TCTTCCATGTCCTTAGACGCGACAC-GAGTGGGTACCAATTTCCAGAGGTAC---------AAATGTTCAGGATGGCTGG
AATTCTAGCGTGTGATTTCGATGCACATCTCGCGCCCTGCTTGAAGCTTGTGCTACAGATTTTTTT----GGTTTTATAA
CCGGATGCTTGCGATATCTTGGTGGTTTGTGATGCATGAACCTAAGTAGCTAGCAGCACATGT-----TGCCTTCC---G
TATGCGGGCTGTGAAGCTGAAAAAGAGCCTCCTGTTCAAGTGTAGTTTCTTCCCTGTTAAACTGACAAACATGAGGTGTC
ACTGCTGACCCTCTGTGCTAGCAGTCTAGCACAGAAGTAGAGCTTTTTGTTCCCAGAATAAGCTGCAGTTTTTAATTGGA
TTTTCGTTATGGATTTTCCTAGTCTCTTTGATGATCGATGCCTTGTTTGTTTCATCGAACCTGCGATGTTGATCCCCCAG
CTTGGCGTACTAGATGGTGCTGTCATGCAATTCTCCAAAAACAAAGAAGTTGATGCTGGCATGCATACGTAGCAGTGGCA
CAGATGATTACTGGAGGTTTTCTCTCTTACTACTAACTAAAGTTCATCGGAGGTTGTAAAAGAAAATCCGAGTTGAAATC
TTTCAAAAATAAATAAATATTAAATTAGCTCAAATTCATGTGT---TTCTTGATCTTCTAGCTACGGGGCCGCCGACATT
TTCGCCCAACGACTGAACGGAACACTGTATTTTTCTTCTTCTCTGAGCTAAGAACGGAACACTGTTGTGAAGGATAAGAC
AGCTGGACTTCTGTCGATGGATTAACCCGGCCCGAAATATATAGATTTGGTTACAGAT----------------------
------------CAAGCTCTCGTCCTCGTAGAGA--TCAGAAACCACACACATGTATACAGTGCACACATTTGAACAAGT
GCCACCAGCAA---------------------------------------------------------------------
-----------------------------------------------
>chr4D_268
AAGACTTGG-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------CCTTTTTCCCTCAGATACACCAAGACAAAATTAGAGCTCTAC
TCAGGACTTGAGGTTCGAGCAGCTCATGAACTTCCAGTATGTTGTATAACATTGGTCGACATGCGCTTGAATATGTGATA
ATGTACTCATATGGGTCCACGGTGGACTAGAGGTTTGGCTGGCATTG---ATATTTAAAGAATGCTGTGTCAT-GATTCT
GGTAGAAAGTATCGGTTATTCTACAAACATTATAGGATATACTGGGCTGAAGGCAAAATA-AAATAAAAATTCACAATAT
ACTCCCTCCGTTTTTATTTACTTCGCATATTAGCTTTGGTCAAAGTCAAGCTTTATAAACTTTGAAAAAATTTATAGACA
AAAATATTGACATGTACAATAACAAATCAATACCATTAGATTCATTATTGAACGTACTTTCTCGTCATATAGATTTTTTA
TCGTAAATATTTATATTCTTTCCTATAAACTTGATCAAACTTTATGAAGTTTGACTTCAGTCAACTCTAATATGCAGAGT
AAATAAAAACGGAGGGAGTACTTGTTAGTCTGTGAATTTCTAATTAGATTATTCTTGGGACAATAGTAATTCTGCTTGTG
ATCATATTTCGTCTGAAGAGCTGCTACTATCTGCTACCATTTCTGTTCAGTCCTATAAGAAATATCTGAACAAAGCTTCG
TTATGATATAATTGCAAAAATCTTTATGAACCAGCAAAAGGCATGTTCCAAGTTGGGACCAGCAAACCCTACTTTCTTCA
CGAACTGGTTCAAGAATACATTGTAGCTTGAATCAACAAAAGACAAGACTAAAACTTTGCCAAGCTTACTTGATAGTTTA
GTCTTGTCATAGTAACTTAATCCTAATAGTTGTGATCTGTTTTATTTGTAGAACCTGGGTGGTATTATTTTGTACACTAA
GTACATAAGTAACATTTTATTTCTTCAGGTTCTTATACAGCTACTTTGTTACAGTTAATACAGATAACATTATCTTGTAC
GATGGCTAGTGCGGAGGATGTGAAGCAGCGGCAGGTTGTTGAAGACCGTGCAAGAAATATTAGCCACAATGTCCGGTGCA
CTGAGTGTGGCAGCCAGTCCATTGAAGATTCGCAAGCAGATGTTGCAGTTCTCCTTAGAAGGGTACTTTTT-GTTCTATA
-ACCTCGTGATGATTTGCTTATTCCTCTGAAGTGCCTGACCTTGTTGGTTCAGTTAGTGGCCAAACTTTTAGTAGCAGAG
ATTTGC-TT-ATTCCTGTATACCTTTTCATGTTTCCACGGCATCCAACTTTTGCTTTGTTGCTCTCTTGATCTTAACAAA
AGCCAACTAAGATAGGAAATTTGATAACACTTTTAACTGAGGTGACACTTGTACTTGAGACCTTATACTGATCAATACAA
CAACAACAAAGCCTTTCAGTCCCAAACAAGTTGGGGTAGGCTCTAGGACTGATCAATAATGACATAAAATAGAATGTGTT
CACC------------------------------------------------------------GGCACCCAATAGTTAA
ATGCAAAATAGGGTTGAGAAACTTGCAATGATATTTGCTACTATCATTTTTTTTTTGAAGAACTACAGTCTGTCTATATG
TCCTT-TTTGGA------ATGATAGAGATGGTTTTGGTAATGCCGCAACTGGTTTGGTTCTTCGATTATATACATTTGCG
TCCTTTTTACTTG-ACTAGGTTTCTTAGACTTGGATGATATTTC----------TGCCTATTCAGCTATATTAAATTTAC
ATTACCTTTCGCTGTACCAGAACACTGTTTTCTGATTCACAAGC-ATTTATTTGCACCATGTACTACATATACACGAGAA
AAAAATTAATCTTGAGTTCTCAACGTCAATATAGGCGCTTGGTTTGTATGCTTTGAAGCATCGAAATATTATTGCCTTGC
ACCCAATATGTCATGGGAAGCTTCACGGCCTCACAAACTGATATATGTGTCA--TTTTTGCAGTTAATTCGTGATGAAAT
AAAATCTGGAAAGAGTGATAAGGAGATATACAAAAAACTAGAAGAAGACTTTGGAGAAACAGTTCTATATGCCCCTAAAT
TTGATCTTCAAACTGCTGCCATATGGTTATCACCGGTGAGCCTTAATTATGATTCTTTTTCCATGCTGTTCAAGTGTCCG
TGC-------------------------------------------------------TTTTATGAATGCATTGTGTGTC
TTGGTGAACCCAAGCATA---TTCCATCATCACAAACTTTTGCGTCAAGATGTTTTTCATAAGT----A-----------
---------CATGGATGATTCTCTTTCATAGTTACTTGGTGAATTTGCAACAAGTGGAAGT-AAA--ATATTTCAATTCT
TAAGAAAATCTAA----------------------TTCCAGCTGATCCCTTGTTGTAGTTCAATGTAGTCTGTAGAGA--
GATACAA----TGATA-----TTGACCTGCTTTCGTTTGTGCTTAGTAAAATTATGTTTTG--CTGCAGCGGAACATGAT
-GAAATGAAGACTTCAAAATATTGAAGTATCTACTCCCCT-GAATTAGTATCATTTTATCCTGTGTAGGTGACTGTGATT
TCTAGGGTAGGCAGTTGAGAGCCTGATACATTAAATCCT--GTGCAGGTCATTGTGGGCGGCGTAGCAGCTGGTGTGTGG
GCTTACCAAAAGCACAGGCAAAGGACCAACGTTCACATCATGGCT----CTGAACCTCGTCCGAGGGGTTCCCCTGACTC
CAAGGGAGAAGGAGACGATGATCGACATCCTCACGCCGCCTCCGCCGGCAAGAAGCTGGTGGTGGCCTCTCAAATGATGT
TCTTTCATGTCCTTAGATGCGACATAGGATGAATACTCATTTCCAGTGGTAGCATCATACAAAATGATCTGGATGGCTGA
AATTTAGTGCA-TGATTTCAATGCACCTCTCACGCCCTGCTTGAAGCTTGGGCCATGGATTTTCTTTGGCTT-----TAA
CCGGATGCTTGCGATGCATTGGCGGTCTAGGATGTACTCCTATGAACCAAGCTGTAGTACATGCTGCCTGCCTTCT---G
TATGTAGGCTGTGAAG----------------------------------------------------------------
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>chr1D_953
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---------------------------------TATACAACTATTTTGTTACAGTTAATACAAATCATATTATCCAGTAT
CATGGCCACCGAGGAGGATGTTAAGCAGCGGCAGATCGTTGAAGACCGTGCAAGAAATATTAGCCACAATGTCCGGTGCA
CTGAGTGTGGCAGCCAGTCCATTGAAGATTCACAAGCAGATGTTGCAGTTCTCCTTAGAAGGGTACTTTTCCGTTCTATA
TACCTCGTAATGATCAGT--------------TGCTTGACCTTCTCCATCCAGTTAGTTGTCAAGCTTTTAGTAGCAGAG
ATTTT--TT-ATGCCTTTATGTTTTTTCATGCTTCCACAGCATCCAACCTTTGCTTTGCTGATCTCTTGATCTCACCCAA
GCCTAACT------------------------------------------------------------------------
---------------------------------------------------------------------------GTGTT
CGAATTAACCATTTGATTAGAAATGGACTAGCTAT---TATCTCGTTACTCAAAGATGTTCACAGGCACCCAATGGTTTA
CTGCAAAATAACGTTGAGAAACTAG-AATGATGTTTGGTATTATAAATATTTATCTAAAAGAACTCTATCTGTCTATACT
TA-TT-TTTGTA------ATGACAAAGATGATCTTGGAAATGCCACAGCTGGTTTGGTTCTTGGATTATATATTTATG--
---TGTTTTTGACTTGACTGTTTCTAAGACCTTGATAATATTTTTGCCCTAGTATGCCTTTTCAGCTATCTTAAGTTTAC
ATTCCCTATTGGTGCACAGGAACACTGTTGTCTGGTGCACAAGCAATTTATTTGCACCATGCACTATGTATACATGC---
AATATTTAATCTTGAGTTCTTGACATAAATAAATGCCCTAGTTCTATATGCTTTAAAGGATTGAAATATTATTGCCAGAC
ACGCAGTATGTCATGG-AAGCTTCATGGC-TCAGGTAATCACATTTGTGT-ATTTTTTTGCAGCTAATTCGCGATGAAAT
AAAATCTGGCAAGAGTGATAAGGAGATATACAAAAAAATAGAAGACAACTTTGGAGAAACAGTTCTATATGCCCCTAAAT
TTGATATTCAAACTGCCACTATATGGTTATCGCCGGTGAGCCTAATT---------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------
>chr1B_961
--------------------------------------------------------------------------------
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-----------------------------------------TATTTTGTTACAGTTAATACAGATCATATTATCCCGTAT
CATGGCCACGGAAGAGGAC----AGCAGCAGCAGATTGTTGAAGACCGTGCAAGAAATATTAGCCACAATGTCCGGTGCA
CTGAGTGTGGCAGCCAGTCCATTGAAGATTCACAAGCAGATGTTGCGGTTCTCCTTAGAAGGGTGCTTTTCCGTTCTATA
TGCCTTGTGATGATTAGT--------------TGTTTGACCTTCTCCATCCAGTTAATTGCCAAGCTTTTAGTAGCAGAG
ATTTTGTTT-ATTCCTGGTTTTTCAAGTAATATT------------ACCTTTGCTTTGTTGATCTCTTGATCTAAGCCAC
GCCTAACTAACATTGGAAATTTGATAACACTTGTAACTGAGGTAACATTTGGACCCGAAACCTTGC--------------
-----------------------------------------------ACTGATCAATAATGACGTAAAATAAAATGTGTT
TGATTTAACCATTTGATCAGAAATGGACTAGCCAT---TTTCTCGTTATTCAAAGATGTTCACAGGCACCCAATAGTTTA
CTGCAAAGTAACGTTGAGAAACTTG-AATGATGTTTGCTATTATAAATATTTATCTGAAAGAAGTCTGTCTGTCTATATG
CCCTT-TTTGAATG--------CAACAATGATCTTGGTAATGCCACAGCTGGTTTCGTTCTTGGATTATACATTTATG--
---TTTTTTTTAG-TGAGTGTTTCTAAGACTTTGATAATATTCTTGCACTGGTATGCCTTTTCAGCTATCTTAAATTTAC
ATTATCTATTGGTGCACTGGAACACCCTTGTCTGGTGCACAAGCA-TTTATTTACCCCATGCACAATGTATACATGC---
AAAATCTAATCTTGAGTTCTTGACATAAATAAATGTACTAATTCTATATGCTTTAAACGATTGAAATATTATTGCCAGAC
ACGCAGTATGTCATGG-AAGCTTCATGGC-TCAGGTAATCACATCTGTGTAATTTTCTTGCAGCTAATTCGCGATGAAAT
AAAATCTGGCAAGAGTGATAAGGAGATATAGAAAAAATTAGAAGACGACTTTGGAGAAACAGTTCTATATGCCCCTAAAT
TTGATATTCAAACTGCCGCTATATGGTTATCGCCGGTGAGCCTAATTGCAAA----TTTAGCATGCTATTCA--------
TGCTTTTATTGTACTAGAAGTAATATTACTTGCACTTC-TTAGCACATTATTTGTTCGTTTCATGCATGCATTGTGTACC
CTGGACCCTGGTGAACCCA---TGTATTATCACAAACTTTTGCGTCAAGATGTTGTTCATAAGT----AATAGGCAGCAT
TAACACAAATGCTGATGATTCTCTTTCCTAATTATTGGGTGAATTTGCACTTA-TGGATGTAAAA--ATATCTGAATTTC
TAA-AGAAGCTAATCGATAACTGAGGATTCCAGGTTTCTAGCTAATCCCTTGTTGTATCTCGACT---TCCGTATAGAGA
CAGTCAGACAGTGATGCTTCTTTGAACTGCATTTATTCGTGCTTAGTAAAATAAAATTAAAATCTGCAGCAGAACATGAT
ACAATTGAACACTTCAAATTATTTAAGTATCTAATTCCCT-AATTTAAACATTTCATGTACAACTG----------GGAT
TCTAGGGTAGGTAGTTCAAAACCTGACATAGTAAAT--T--ATGCAGGTCATTGTGGGTGGGGTTGCAGCTGGTGTCTGG
GCTTACCAAAAGCATAGGCAAAGGACTAACATTCACATTATGGCT----CTGAACCTTGTCCGAGGGGTTCCCCTGACTC
CAAGGGAGAAGGAGACGATGATTGACATCCTTACACCGCCTCTTCTAACTAGGAGATGGTGGTGGCCTGTCAAGTGATGT
TC------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>chr1A_1073
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------CGGTGCA
CTGAGTGTGGAAGCCAGTCCATTGAAGATTCACAAGCAGATGTTGCAGTTCTCCTTAGAAGGGTACTTTTCCGTTCTATA
TATCTCGTGATGATCAGT--------------TGCTTGACCTTCTCCATCCAGTTAGTTGTCAAGCTTTTAGTAGCAGAG
ATTTT--TTTATACCTTTATATTTTTTCATGCTTCCACAGCATCCAACCTTTGCTTTACTTATCTCTTGATCTCAGCCAA
ACCTAACT------------------------------------------------------------------------
---------------------------------------------------------------------------GTGTT
TGAATTAACCATTTGCTTAGAAATGAACTAGCTACTTGTATCTCGTTACTCAAAGATGTTCACAGGCGCCCAATGGTTTA
CTGCAAAATAACGTTGAGAAACTTG-AATGATGTTTGCTATTATATATATTTATCTGAAAGAACTCTATCTGTCTATACT
TA-TTGTTTGTA------ATGACAAAGATGATCTTGCAAATGCCACAGTTGGCTTGGTTCTTGGATTATATATTTATG--
---TGTTTTTGACTTGATTGTTTCTAAGACTTTGATAATATTTTTGCCCTGGTATGCCTTTTCAGCTATCTTAAATTTCC
ATTACCTATTGGTGCACAGGAACACTGTTGTCTGGTGCACAAGCAATTTATTTGCACCATGCACTATGTATACATGC---
AATATTTAATCTTGAATTCTTGACATAAATAAATGCCCTAGTTCTATATGCTTTAAA-GATTGAAATTTTATTGCCAGAC
ACGCAGTATGTGATGG-AAGCTTCATGGC-TCAGGTAATCACATATGTGTAATTTTTGTGCAGCTAATTCGCGATGAAAT
AAAATCTGGCAAGAGTGATAAGGAGATATACAAAAAATTAGAAGACGACTTTGGCGAAACGGTTCTATATGCCCCTAA-T
TTGATATTCAAACTGCCGCTATATGGTTATCGTCGGTGAGCCTAATTGCAAA----TTTAACATGCTATTCA--------
TACTTTTATTGTACTAGAAGTAATATTACTTGCACTTC-TTAGCACATTATTTGTTTGTTTCATGCATGCATTGGTGTG-
-----CCCTGGTGAACCCA---TCTATTGTCACGAACTTTTGCGTCAAGATGTTGTTCATAAGT----AATAGGCAGCAT
TAACACAAATGCTGATGATTCTCTTTCATAGTTATTGAGTGAATTTGCACCTA-TGGATGTAAAA--ATATCTGAATTTC
TAA-AGAAGCTAATCAATAACTGAGGATTCCAGGTTTCTAGCTGATCCCTTGTTGTATCTCAACT---TCTGTATAGA--
CAGTCAGACAGTGATGCTTATTTGAACTACATTTATTCGTGCGTAGTAAAATAAAATAAAAATCTGCAGCAGAAAATGCT
GCAATCGAACACTTCAAATTATTTAAGTATCTAATTCCCTTAATTTAAATATTTCATGTACAACTG----------GGTT
TCTAGGGTAGGTAGTTCAAAACCTGACACGGTAAAT--T--GTGCAGGTTATTGTGGGTGGGGTTGCAGCTGGTATCTGG
GCTTACCAAAAGCATAGGCAAAGGACTAACGTTCACATTATGGCT----CTGAACCTTGTCCGAGGGGTTCCCCTGACTC
CAAGGGAGAAGGAGACGATGATTGACATCCTTACGCCGCCTCCACTAACTAGGAGATGGTGGTGGCCTATCAAGTGATGT
TC----ATGTCCTCAGATGCAACAT-------------------------------------------------------
--------------------------------------------------------------------------------
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>chr1B_2107
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---------TATACTAGAAGTAATATTGCTTTCCCTTC-TTAGCACATTATTTGTTCGTTTTATGCATGCATTGTGTGTC
TTGGACTCTTGGTGAGACCAGTTCTATCATCACAAACTTTTGCATCAAGATGTTGTTAACTTAAATAAA-----------
---------TGTTGGTGATT-TCTTTCATAATTATTGGGCGAATTTGTGCAAGTTGGATGT-AAA--ATATCTCAATTTC
TAA-AGAATTTACGCCTA------------------------TGTTCCCTTGTAGTAACTCAACT---GCTATATAGA--
CAGCCAGACAGTGATGCTTATTTGAACTGCATTTGTTCGTGCTTAGTAAAATAAAATAAAAATTTACAGCATAACATGAT
AAAATTGAACACTTCAAATTATTTAAGTACCTAATTCCTTGAATTTAAATATTTCATGTACAACTG----------GGAT
TCTAGGGTAGGTAGTTCAAAACCTGACATAGTAAAT--TCTGTGCAGGTCATTGTGGGTAGGGTTGCAATTGGTGTCCGG
TCTTACCAAAAGCATAGGCAAATGACTTACATTCACATTATGGCTCTGACTGAACCTCGTCCGAGGGGTTCCCC-GACAC
CAAGGGAGAAGGAGATGATGATTGACATC-TTACGCCGCC----------------------------------------
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>chr1B_2107
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---------TATACTAGAAGTAATATTGCTTGCACTTC-TTAGCACATTATTTGTTCGTTTTATGCATGCATTGTGTGTC
TTGGACTCTTGGTGAGACCAGTTCTATCATCACAAACTTTTGCATCAAGATGTTGTTAACTTAAATAAA-----------
---------TGCTGGTGATT-TCTTTCATAACTATTGGGCGAATTTGCGCAAGTTGGATGT-AAA--ATATCTCAATTTC
TAA-AGAATTTGCGCCTA------------------------TGTTCCCTTGTAGTAACTCACCT---GCTGTATAGA--
CAGCCAGACAGTGATGCTTATTTGAACTACATTTGTGCGTGCTTAGTAAAATAAAATAAAAATTTACAGCATAACATGAT
AAAATTGAACACTTCAAATTATTTAAGTACCTAATTCCGTGAATTTAAATATTTCACGTACAACTG----------GGAT
TCTAGGGTAGGTAGTTCAAAACCTGACATAGTAAAT--TCTGTTCAGGTCATTATGGGTAGGGTTGCAATTGGTGTACGG
GCTTACCAAAAGCATAGGCAAATGACTTACATTCACATTATGGCTCTGACTGAACCTCGTCCGAGGGGTTCCCT-GATGC
CAAGGGAGAAGGAGATGATGATTGACATC-TTATGCCGCC----------------------------------------
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>chr1D_2107
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---------TATACTAGAAGTAATATTGCTTGCACTTC-TTAGCACATTATTTGTTTGTTTTATGCATGCATTGTGTGTC
TTGGACTCTTGGTGAGACCAGTTCTATCATCACAAACTTTTGCATCAAGATGTTGTTAACTTAAATAAA-----------
---------CGCCGGTGATTCTCTTTCATAATTATTGGGCGAATTTGCGCCAGTTGGATGTAAAA----ATCTCAATTTC
TAA-AGAATTTGCGCCTA------------------------TGTTCCCTTGTTGTATCTCAACT---TCTGTATAGA--
TAGTCAGACAGTGATGCTTATTTGAACTGCATTTGTTCGTGCTTAGTAAAATAAAATAAAAATT-GCAGCATAACATGAT
AAAATTGAACACTTCAAATTATTTAAGTACCTAATTCCCTGAATTTAAATATTTCATGTACAACTG----------GGAT
TCTAGGGGAGGTAGTTCAAAACATGACATAGTAAAT------------TCTTTGTGGGTGGGGTTGCAACTGGTGTCCGG
GCTTACCAAAAGCATAGGCAAAGGACTTACGTTCACATTATGGCTCTAACTGAACCTCGTCCGAGGGGTTCCCT-GACGC
CAAGGGAGAAACAGATGATGATTGACATC-TTACGCCGCC----------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------
>SNPs
S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------------
----S--------S------------------S-----------------------------S-------S---------
-------------------S--------------------------------------------S-S-S----S------
------------SS-------------------------------S-------S------S-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------S-S---------------------------------S------------------SS-----
-------------------------------S---------------------------------------SS-S-----
-----------------------------------S--------------------------------------------
S----S----------S--------------------------------------S------------------------
----------------------------------------------------------------------------S---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------S--------------------------------
---S-------------------------------------------S-------------------------------S
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------S------------------------------SS----------------------
----S--------SSSSS--------------------------------------------------------------
--------------------------------------------------------------------------------
----------S----------------------------------------S----------------------------
--------------------------------------------------------------------------------
------------------------------SS------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------S------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------S---------------------------------------------------S-------------------S-
----------S-----------S-----------S------------------------------S--------------
---S-----------S---------------------------------S------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------S------------------S-----------------------------------
---------SS---------S----------------------S-----------------------SSS----------
--------------------------------S-------------------------------------------SSS-
-----S------------------S------------------------------------------------S------
---------------------------------S---------S--------S--------------SS---------S-
-------SSSSSS---------------------------S-S-------------S---------SS------------
------------------S---S--------------S-------S------S---------------S------S----
-------------------------------------------------------------S------S-------SS--
--------------S---S------------------------SSS-----------------------------SS---
---S-----------------S------SS-S-----------------------------------------------S
-------S------S----------------------------SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS----------------------SS--------------------------------------------
-----------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_215
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------GGGTGATTCTGCAGGAAGCT-------------------------
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>reverse_1568
--------------------------------------------------------------------------------
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-----------------------------------------------ATTTTGCTTTGTTGCTCTCTTGA----------
--------------------------------------------------------------------------------
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>forward_1488
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------TGGTTGCCTGACCTTGTTGT--------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------
>reverse_3437
--------------------------------------------------------------------------------
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----------------------------------------------------------------------------TCCG
TATGCTGGCTGTGAAG----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-----------------------------------------------
