Multiple sequence alignment - TraesCS5A01G490600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G490600 chr5A 100.000 3362 0 0 1 3362 659838484 659841845 0.000000e+00 6209.0
1 TraesCS5A01G490600 chr5A 95.238 168 4 1 679 842 4844185 4844352 2.570000e-66 263.0
2 TraesCS5A01G490600 chr5A 91.146 192 8 6 659 842 613017020 613017210 5.570000e-63 252.0
3 TraesCS5A01G490600 chr4D 83.568 1844 140 71 1627 3351 482723922 482722123 0.000000e+00 1576.0
4 TraesCS5A01G490600 chr4D 89.300 486 37 8 1 484 482725633 482725161 2.230000e-166 595.0
5 TraesCS5A01G490600 chr4D 85.448 591 41 18 840 1401 482724749 482724175 1.050000e-159 573.0
6 TraesCS5A01G490600 chr4D 93.617 94 6 0 391 484 182203537 182203630 1.260000e-29 141.0
7 TraesCS5A01G490600 chr4D 96.226 53 2 0 536 588 482724982 482724930 1.660000e-13 87.9
8 TraesCS5A01G490600 chr4B 83.353 853 81 37 1248 2060 612329055 612328224 0.000000e+00 732.0
9 TraesCS5A01G490600 chr4B 89.059 457 42 5 2176 2624 612328078 612327622 8.150000e-156 560.0
10 TraesCS5A01G490600 chr4B 86.221 479 47 11 2069 2529 612327500 612327023 5.010000e-138 501.0
11 TraesCS5A01G490600 chr4B 78.037 428 32 24 2972 3355 612325752 612325343 2.630000e-51 213.0
12 TraesCS5A01G490600 chr4B 91.772 158 6 3 1066 1223 612330556 612330406 2.630000e-51 213.0
13 TraesCS5A01G490600 chr4B 80.808 297 29 9 1 274 612332064 612331773 1.220000e-49 207.0
14 TraesCS5A01G490600 chr4B 90.909 132 9 2 840 971 612331197 612331069 1.240000e-39 174.0
15 TraesCS5A01G490600 chr4B 95.000 80 4 0 2065 2144 612328155 612328076 3.520000e-25 126.0
16 TraesCS5A01G490600 chr4B 92.647 68 5 0 417 484 612331649 612331582 7.680000e-17 99.0
17 TraesCS5A01G490600 chr4B 100.000 31 0 0 484 514 612331496 612331466 1.300000e-04 58.4
18 TraesCS5A01G490600 chr7B 95.266 169 4 1 677 841 1256692 1256860 7.150000e-67 265.0
19 TraesCS5A01G490600 chr7B 92.896 183 7 3 667 843 131512344 131512162 9.250000e-66 261.0
20 TraesCS5A01G490600 chr7A 93.407 182 6 3 665 841 47626284 47626464 7.150000e-67 265.0
21 TraesCS5A01G490600 chr7A 94.253 174 7 1 679 849 721710492 721710319 2.570000e-66 263.0
22 TraesCS5A01G490600 chr6B 95.266 169 4 1 677 841 464866053 464866221 7.150000e-67 265.0
23 TraesCS5A01G490600 chr6B 93.785 177 5 3 680 850 114057202 114057026 9.250000e-66 261.0
24 TraesCS5A01G490600 chr6B 90.256 195 13 4 658 846 367269018 367268824 2.000000e-62 250.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G490600 chr5A 659838484 659841845 3361 False 6209.000 6209 100.0000 1 3362 1 chr5A.!!$F3 3361
1 TraesCS5A01G490600 chr4D 482722123 482725633 3510 True 707.975 1576 88.6355 1 3351 4 chr4D.!!$R1 3350
2 TraesCS5A01G490600 chr4B 612325343 612332064 6721 True 288.340 732 88.7806 1 3355 10 chr4B.!!$R1 3354

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
514 649 0.607489 ATGCCTGTCTGGAAGCACAC 60.607 55.0 0.0 0.0 38.21 3.82 F
2036 4150 0.031994 GTCCATTTTGTGCGCAACCT 59.968 50.0 14.0 0.0 33.82 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2178 5025 0.105039 CGGTGCTAGGGGAATCTGTC 59.895 60.0 0.00 0.0 0.0 3.51 R
2913 6291 0.034670 AAGAGGCCAACATCAGCTCC 60.035 55.0 5.01 0.0 0.0 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 8.254508 TGGTTTGCTCTGTTACTTTTAAACAAT 58.745 29.630 0.00 0.00 36.46 2.71
169 190 7.662897 TGACAAGCATATCCGTATGTATGTTA 58.337 34.615 8.52 4.30 38.33 2.41
172 194 8.935844 ACAAGCATATCCGTATGTATGTTAATG 58.064 33.333 0.00 0.00 39.90 1.90
248 273 1.818785 GCCTGACTCTGCTCCATGC 60.819 63.158 0.00 0.00 43.25 4.06
278 303 3.625764 GCACACAAGAAGGTTCTGTTGTA 59.374 43.478 6.28 0.00 37.65 2.41
288 313 3.700038 AGGTTCTGTTGTAGCGCTACTAT 59.300 43.478 38.89 18.38 37.00 2.12
290 315 3.079960 TCTGTTGTAGCGCTACTATGC 57.920 47.619 38.89 27.17 37.00 3.14
291 316 2.425668 TCTGTTGTAGCGCTACTATGCA 59.574 45.455 38.89 29.37 37.00 3.96
292 317 2.791560 CTGTTGTAGCGCTACTATGCAG 59.208 50.000 38.89 32.53 37.00 4.41
293 318 2.425668 TGTTGTAGCGCTACTATGCAGA 59.574 45.455 38.89 20.61 37.00 4.26
294 319 3.068165 TGTTGTAGCGCTACTATGCAGAT 59.932 43.478 38.89 5.87 37.00 2.90
295 320 3.560902 TGTAGCGCTACTATGCAGATC 57.439 47.619 38.89 16.42 37.00 2.75
298 323 1.688735 AGCGCTACTATGCAGATCCAA 59.311 47.619 8.99 0.00 0.00 3.53
304 329 5.107182 CGCTACTATGCAGATCCAAATCTTG 60.107 44.000 0.00 0.00 40.38 3.02
306 331 6.484643 GCTACTATGCAGATCCAAATCTTGAA 59.515 38.462 0.00 0.00 40.38 2.69
307 332 7.174599 GCTACTATGCAGATCCAAATCTTGAAT 59.825 37.037 0.00 0.00 40.38 2.57
309 334 8.302515 ACTATGCAGATCCAAATCTTGAATTT 57.697 30.769 0.00 0.00 40.38 1.82
321 346 8.487176 CCAAATCTTGAATTTTAAGGTTTCACG 58.513 33.333 8.70 0.76 36.59 4.35
329 354 3.842007 TTAAGGTTTCACGAGGGAACA 57.158 42.857 0.00 0.00 0.00 3.18
331 356 2.256117 AGGTTTCACGAGGGAACAAG 57.744 50.000 0.00 0.00 0.00 3.16
355 380 1.180029 TGTGTTACCCGTAGAGGCTC 58.820 55.000 6.34 6.34 39.21 4.70
445 494 2.744202 CCTGTGCTTGGTTGTAGCTAAG 59.256 50.000 0.00 0.00 39.38 2.18
454 503 7.229707 TGCTTGGTTGTAGCTAAGAAACAAATA 59.770 33.333 14.89 7.19 39.38 1.40
514 649 0.607489 ATGCCTGTCTGGAAGCACAC 60.607 55.000 0.00 0.00 38.21 3.82
516 651 1.669115 CCTGTCTGGAAGCACACCG 60.669 63.158 0.00 0.00 38.35 4.94
534 710 3.324713 GCAGGTATGGCCAGGAGT 58.675 61.111 13.05 0.00 40.61 3.85
544 720 1.312815 GGCCAGGAGTGCATATTCAC 58.687 55.000 0.00 0.00 37.24 3.18
591 767 8.983789 TCACCTGTTTTATCCATACATGTACTA 58.016 33.333 7.96 0.00 0.00 1.82
592 768 9.042008 CACCTGTTTTATCCATACATGTACTAC 57.958 37.037 7.96 0.00 0.00 2.73
641 906 6.989169 AGGTCGGAATTCTCATCAAGAAATAG 59.011 38.462 5.23 0.00 46.85 1.73
686 951 9.856488 AAAAAGAAAGAGAAACAAAACTACTCC 57.144 29.630 0.00 0.00 0.00 3.85
687 952 7.569639 AAGAAAGAGAAACAAAACTACTCCC 57.430 36.000 0.00 0.00 0.00 4.30
688 953 6.901300 AGAAAGAGAAACAAAACTACTCCCT 58.099 36.000 0.00 0.00 0.00 4.20
689 954 6.993308 AGAAAGAGAAACAAAACTACTCCCTC 59.007 38.462 0.00 0.00 0.00 4.30
690 955 5.230323 AGAGAAACAAAACTACTCCCTCC 57.770 43.478 0.00 0.00 0.00 4.30
691 956 3.995048 GAGAAACAAAACTACTCCCTCCG 59.005 47.826 0.00 0.00 0.00 4.63
692 957 3.390311 AGAAACAAAACTACTCCCTCCGT 59.610 43.478 0.00 0.00 0.00 4.69
693 958 3.851458 AACAAAACTACTCCCTCCGTT 57.149 42.857 0.00 0.00 0.00 4.44
694 959 3.397849 ACAAAACTACTCCCTCCGTTC 57.602 47.619 0.00 0.00 0.00 3.95
695 960 2.038164 ACAAAACTACTCCCTCCGTTCC 59.962 50.000 0.00 0.00 0.00 3.62
696 961 2.302157 CAAAACTACTCCCTCCGTTCCT 59.698 50.000 0.00 0.00 0.00 3.36
697 962 3.463048 AAACTACTCCCTCCGTTCCTA 57.537 47.619 0.00 0.00 0.00 2.94
698 963 3.463048 AACTACTCCCTCCGTTCCTAA 57.537 47.619 0.00 0.00 0.00 2.69
699 964 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
700 965 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
701 966 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
702 967 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
703 968 6.141790 ACTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
704 969 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
705 970 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
706 971 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
707 972 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
708 973 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
709 974 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
710 975 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
711 976 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
712 977 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
713 978 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
714 979 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
715 980 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
739 1004 9.302345 AGACATTTCAAATGACTACTACATACG 57.698 33.333 17.30 0.00 0.00 3.06
740 1005 8.420374 ACATTTCAAATGACTACTACATACGG 57.580 34.615 17.30 0.00 0.00 4.02
741 1006 8.255206 ACATTTCAAATGACTACTACATACGGA 58.745 33.333 17.30 0.00 0.00 4.69
742 1007 9.261180 CATTTCAAATGACTACTACATACGGAT 57.739 33.333 3.82 0.00 0.00 4.18
743 1008 8.642908 TTTCAAATGACTACTACATACGGATG 57.357 34.615 5.94 5.94 39.16 3.51
745 1010 8.454570 TCAAATGACTACTACATACGGATGTA 57.545 34.615 19.32 19.32 44.77 2.29
746 1011 9.074576 TCAAATGACTACTACATACGGATGTAT 57.925 33.333 20.64 13.02 45.42 2.29
783 1048 5.931441 AAGTGTAGATTCACTCACTTTGC 57.069 39.130 12.16 0.00 46.25 3.68
784 1049 5.220710 AGTGTAGATTCACTCACTTTGCT 57.779 39.130 0.00 0.00 44.07 3.91
785 1050 5.233988 AGTGTAGATTCACTCACTTTGCTC 58.766 41.667 0.00 0.00 44.07 4.26
786 1051 4.390297 GTGTAGATTCACTCACTTTGCTCC 59.610 45.833 0.00 0.00 35.68 4.70
787 1052 2.693069 AGATTCACTCACTTTGCTCCG 58.307 47.619 0.00 0.00 0.00 4.63
788 1053 2.037772 AGATTCACTCACTTTGCTCCGT 59.962 45.455 0.00 0.00 0.00 4.69
789 1054 3.258372 AGATTCACTCACTTTGCTCCGTA 59.742 43.478 0.00 0.00 0.00 4.02
790 1055 3.678056 TTCACTCACTTTGCTCCGTAT 57.322 42.857 0.00 0.00 0.00 3.06
791 1056 2.959516 TCACTCACTTTGCTCCGTATG 58.040 47.619 0.00 0.00 0.00 2.39
792 1057 2.299013 TCACTCACTTTGCTCCGTATGT 59.701 45.455 0.00 0.00 0.00 2.29
793 1058 3.508402 TCACTCACTTTGCTCCGTATGTA 59.492 43.478 0.00 0.00 0.00 2.29
794 1059 3.859961 CACTCACTTTGCTCCGTATGTAG 59.140 47.826 0.00 0.00 0.00 2.74
795 1060 3.510360 ACTCACTTTGCTCCGTATGTAGT 59.490 43.478 0.00 0.00 0.00 2.73
796 1061 4.021368 ACTCACTTTGCTCCGTATGTAGTT 60.021 41.667 0.00 0.00 0.00 2.24
797 1062 5.184479 ACTCACTTTGCTCCGTATGTAGTTA 59.816 40.000 0.00 0.00 0.00 2.24
798 1063 5.404946 TCACTTTGCTCCGTATGTAGTTAC 58.595 41.667 0.00 0.00 0.00 2.50
799 1064 5.184479 TCACTTTGCTCCGTATGTAGTTACT 59.816 40.000 0.00 0.00 0.00 2.24
800 1065 5.867716 CACTTTGCTCCGTATGTAGTTACTT 59.132 40.000 0.00 0.00 0.00 2.24
801 1066 5.867716 ACTTTGCTCCGTATGTAGTTACTTG 59.132 40.000 0.00 0.00 0.00 3.16
802 1067 5.395682 TTGCTCCGTATGTAGTTACTTGT 57.604 39.130 0.00 0.00 0.00 3.16
803 1068 5.395682 TGCTCCGTATGTAGTTACTTGTT 57.604 39.130 0.00 0.00 0.00 2.83
804 1069 5.165676 TGCTCCGTATGTAGTTACTTGTTG 58.834 41.667 0.00 0.00 0.00 3.33
805 1070 5.047872 TGCTCCGTATGTAGTTACTTGTTGA 60.048 40.000 0.00 0.00 0.00 3.18
806 1071 5.865552 GCTCCGTATGTAGTTACTTGTTGAA 59.134 40.000 0.00 0.00 0.00 2.69
807 1072 6.366877 GCTCCGTATGTAGTTACTTGTTGAAA 59.633 38.462 0.00 0.00 0.00 2.69
808 1073 7.064253 GCTCCGTATGTAGTTACTTGTTGAAAT 59.936 37.037 0.00 0.00 0.00 2.17
809 1074 8.246908 TCCGTATGTAGTTACTTGTTGAAATG 57.753 34.615 0.00 0.00 0.00 2.32
810 1075 6.959311 CCGTATGTAGTTACTTGTTGAAATGC 59.041 38.462 0.00 0.00 0.00 3.56
811 1076 7.360522 CCGTATGTAGTTACTTGTTGAAATGCA 60.361 37.037 0.00 0.00 0.00 3.96
812 1077 8.012809 CGTATGTAGTTACTTGTTGAAATGCAA 58.987 33.333 0.00 0.00 0.00 4.08
813 1078 9.672086 GTATGTAGTTACTTGTTGAAATGCAAA 57.328 29.630 0.00 0.00 38.44 3.68
814 1079 8.801715 ATGTAGTTACTTGTTGAAATGCAAAG 57.198 30.769 0.00 0.00 38.44 2.77
815 1080 7.990917 TGTAGTTACTTGTTGAAATGCAAAGA 58.009 30.769 0.00 0.00 38.44 2.52
816 1081 7.913297 TGTAGTTACTTGTTGAAATGCAAAGAC 59.087 33.333 0.00 0.00 38.44 3.01
817 1082 6.862209 AGTTACTTGTTGAAATGCAAAGACA 58.138 32.000 0.00 0.00 38.44 3.41
818 1083 7.319646 AGTTACTTGTTGAAATGCAAAGACAA 58.680 30.769 0.00 0.00 38.44 3.18
819 1084 7.489113 AGTTACTTGTTGAAATGCAAAGACAAG 59.511 33.333 20.52 20.52 43.54 3.16
820 1085 5.723295 ACTTGTTGAAATGCAAAGACAAGT 58.277 33.333 21.40 21.40 44.86 3.16
821 1086 6.862209 ACTTGTTGAAATGCAAAGACAAGTA 58.138 32.000 23.71 7.09 46.42 2.24
822 1087 7.491682 ACTTGTTGAAATGCAAAGACAAGTAT 58.508 30.769 23.71 10.19 46.42 2.12
823 1088 7.981225 ACTTGTTGAAATGCAAAGACAAGTATT 59.019 29.630 23.71 9.72 46.42 1.89
824 1089 8.715191 TTGTTGAAATGCAAAGACAAGTATTT 57.285 26.923 0.00 0.00 38.44 1.40
825 1090 9.809096 TTGTTGAAATGCAAAGACAAGTATTTA 57.191 25.926 0.00 0.00 38.44 1.40
826 1091 9.462174 TGTTGAAATGCAAAGACAAGTATTTAG 57.538 29.630 0.00 0.00 38.44 1.85
827 1092 8.915654 GTTGAAATGCAAAGACAAGTATTTAGG 58.084 33.333 0.00 0.00 38.44 2.69
828 1093 8.402798 TGAAATGCAAAGACAAGTATTTAGGA 57.597 30.769 0.00 0.00 31.65 2.94
829 1094 8.855110 TGAAATGCAAAGACAAGTATTTAGGAA 58.145 29.630 0.00 0.00 31.65 3.36
830 1095 9.860898 GAAATGCAAAGACAAGTATTTAGGAAT 57.139 29.630 0.00 0.00 31.65 3.01
831 1096 9.643693 AAATGCAAAGACAAGTATTTAGGAATG 57.356 29.630 0.00 0.00 30.08 2.67
832 1097 7.156876 TGCAAAGACAAGTATTTAGGAATGG 57.843 36.000 0.00 0.00 0.00 3.16
833 1098 6.945435 TGCAAAGACAAGTATTTAGGAATGGA 59.055 34.615 0.00 0.00 0.00 3.41
834 1099 7.121168 TGCAAAGACAAGTATTTAGGAATGGAG 59.879 37.037 0.00 0.00 0.00 3.86
835 1100 7.415653 GCAAAGACAAGTATTTAGGAATGGAGG 60.416 40.741 0.00 0.00 0.00 4.30
836 1101 6.253946 AGACAAGTATTTAGGAATGGAGGG 57.746 41.667 0.00 0.00 0.00 4.30
837 1102 5.970640 AGACAAGTATTTAGGAATGGAGGGA 59.029 40.000 0.00 0.00 0.00 4.20
838 1103 6.100424 AGACAAGTATTTAGGAATGGAGGGAG 59.900 42.308 0.00 0.00 0.00 4.30
850 1115 6.218522 AGGAATGGAGGGAGTATTTTTCTCTT 59.781 38.462 0.00 0.00 33.06 2.85
859 1124 4.760878 AGTATTTTTCTCTTCGAGAGCCC 58.239 43.478 6.93 0.00 42.04 5.19
890 1155 1.273324 TGAAACCCCAAAACCTGTGGT 60.273 47.619 0.00 0.00 37.65 4.16
900 1165 4.363990 CCTGTGGTCGCAGCTCGT 62.364 66.667 6.04 0.00 39.67 4.18
901 1166 2.807045 CTGTGGTCGCAGCTCGTC 60.807 66.667 0.00 1.11 39.67 4.20
902 1167 3.558099 CTGTGGTCGCAGCTCGTCA 62.558 63.158 0.00 3.91 39.67 4.35
1162 1860 2.520536 GCCGTATGATGCCCTCCCT 61.521 63.158 0.00 0.00 0.00 4.20
1163 1861 1.674057 CCGTATGATGCCCTCCCTC 59.326 63.158 0.00 0.00 0.00 4.30
1164 1862 1.674057 CGTATGATGCCCTCCCTCC 59.326 63.158 0.00 0.00 0.00 4.30
1165 1863 0.833834 CGTATGATGCCCTCCCTCCT 60.834 60.000 0.00 0.00 0.00 3.69
1166 1864 0.980423 GTATGATGCCCTCCCTCCTC 59.020 60.000 0.00 0.00 0.00 3.71
1167 1865 0.567687 TATGATGCCCTCCCTCCTCA 59.432 55.000 0.00 0.00 0.00 3.86
1233 1937 1.384643 AGGCAGGGGAGGTACCATC 60.385 63.158 15.94 8.66 41.20 3.51
1239 1943 1.938069 AGGGGAGGTACCATCAGTAGT 59.062 52.381 15.94 0.00 41.20 2.73
1242 1946 3.640498 GGGGAGGTACCATCAGTAGTTAC 59.360 52.174 15.94 0.00 41.20 2.50
1270 3296 0.804989 CCGCCGCTTTCTTTCTTGAT 59.195 50.000 0.00 0.00 0.00 2.57
1271 3297 1.200020 CCGCCGCTTTCTTTCTTGATT 59.800 47.619 0.00 0.00 0.00 2.57
1272 3298 2.245096 CGCCGCTTTCTTTCTTGATTG 58.755 47.619 0.00 0.00 0.00 2.67
1273 3299 2.095768 CGCCGCTTTCTTTCTTGATTGA 60.096 45.455 0.00 0.00 0.00 2.57
1274 3300 3.426695 CGCCGCTTTCTTTCTTGATTGAT 60.427 43.478 0.00 0.00 0.00 2.57
1322 3348 1.406751 GCACCCCATTTTGCCAATACC 60.407 52.381 0.00 0.00 32.21 2.73
1348 3378 1.221909 GGGGAAGAAAGGGGGTGGAT 61.222 60.000 0.00 0.00 0.00 3.41
1354 3384 1.359130 AGAAAGGGGGTGGATTTCTGG 59.641 52.381 0.00 0.00 40.74 3.86
1369 3399 5.590663 GGATTTCTGGGATCTGTAGGTTTTC 59.409 44.000 0.00 0.00 0.00 2.29
1385 3429 4.033019 GGTTTTCGTAGTGTTGCAGAAAC 58.967 43.478 0.00 0.00 39.41 2.78
1386 3430 3.955771 TTTCGTAGTGTTGCAGAAACC 57.044 42.857 0.00 0.00 38.06 3.27
1392 3436 1.750778 AGTGTTGCAGAAACCAACTGG 59.249 47.619 5.94 0.00 42.25 4.00
1403 3447 5.067674 CAGAAACCAACTGGAAGAATTGACA 59.932 40.000 1.86 0.00 37.43 3.58
1409 3453 6.207417 ACCAACTGGAAGAATTGACAACATAG 59.793 38.462 1.86 0.00 37.43 2.23
1413 3457 4.943705 TGGAAGAATTGACAACATAGGCTC 59.056 41.667 0.00 0.00 0.00 4.70
1414 3458 4.336713 GGAAGAATTGACAACATAGGCTCC 59.663 45.833 0.00 0.00 0.00 4.70
1415 3459 3.891049 AGAATTGACAACATAGGCTCCC 58.109 45.455 0.00 0.00 0.00 4.30
1416 3460 2.736670 ATTGACAACATAGGCTCCCC 57.263 50.000 0.00 0.00 0.00 4.81
1421 3465 1.216990 CAACATAGGCTCCCCCTTCT 58.783 55.000 0.00 0.00 43.06 2.85
1425 3469 1.356494 ATAGGCTCCCCCTTCTTGCC 61.356 60.000 0.00 0.00 43.06 4.52
1428 3472 1.228862 GCTCCCCCTTCTTGCCAAA 60.229 57.895 0.00 0.00 0.00 3.28
1431 3475 0.263172 TCCCCCTTCTTGCCAAACAA 59.737 50.000 0.00 0.00 36.62 2.83
1433 3477 1.699083 CCCCCTTCTTGCCAAACAATT 59.301 47.619 0.00 0.00 37.72 2.32
1439 3483 3.302365 TCTTGCCAAACAATTAGCTGC 57.698 42.857 0.00 0.00 37.72 5.25
1467 3511 6.923508 CAGTCTTGGAAATACGTAGCATATCA 59.076 38.462 0.08 0.00 0.00 2.15
1468 3512 6.924060 AGTCTTGGAAATACGTAGCATATCAC 59.076 38.462 0.08 0.00 0.00 3.06
1476 3520 8.662781 AAATACGTAGCATATCACAGTGATTT 57.337 30.769 21.30 10.94 38.26 2.17
1500 3544 0.041576 CGTGCTTCATGATGCATCGG 60.042 55.000 31.55 21.84 42.26 4.18
1504 3548 1.683943 CTTCATGATGCATCGGGGTT 58.316 50.000 21.34 1.51 0.00 4.11
1507 3551 2.571212 TCATGATGCATCGGGGTTAAC 58.429 47.619 21.34 0.00 0.00 2.01
1597 3653 6.297582 AGGAGAAAAGATCATAGAATGCCTG 58.702 40.000 0.00 0.00 0.00 4.85
1601 3657 4.637387 AAGATCATAGAATGCCTGGAGG 57.363 45.455 0.00 0.00 38.53 4.30
1604 3660 4.286549 AGATCATAGAATGCCTGGAGGAAG 59.713 45.833 0.00 0.00 37.39 3.46
1607 3663 1.673767 AGAATGCCTGGAGGAAGGAA 58.326 50.000 0.00 0.00 40.02 3.36
1608 3664 1.995542 AGAATGCCTGGAGGAAGGAAA 59.004 47.619 0.00 0.00 40.02 3.13
1611 3667 0.110486 TGCCTGGAGGAAGGAAACAC 59.890 55.000 0.00 0.00 40.02 3.32
1612 3668 0.110486 GCCTGGAGGAAGGAAACACA 59.890 55.000 0.00 0.00 40.02 3.72
1622 3714 4.010349 GGAAGGAAACACAGTAGGATTGG 58.990 47.826 0.00 0.00 0.00 3.16
1623 3715 4.506802 GGAAGGAAACACAGTAGGATTGGT 60.507 45.833 0.00 0.00 0.00 3.67
1654 3758 2.726821 AGTACAAGTGCAATCCCCATG 58.273 47.619 0.00 0.00 0.00 3.66
1655 3759 1.134946 GTACAAGTGCAATCCCCATGC 59.865 52.381 0.00 0.00 44.08 4.06
1686 3791 2.162408 GGCTTCTGCTGAACAACATACC 59.838 50.000 1.33 0.00 39.59 2.73
1694 3799 3.758554 GCTGAACAACATACCCAGTTCAT 59.241 43.478 7.22 0.00 46.26 2.57
1771 3877 2.682494 TAGACCACGGTGGAGGGC 60.682 66.667 32.72 17.64 40.96 5.19
1802 3908 1.137479 ACTGTTCGTCTCAAAACCGGA 59.863 47.619 9.46 0.00 0.00 5.14
1803 3909 1.792949 CTGTTCGTCTCAAAACCGGAG 59.207 52.381 9.46 0.00 0.00 4.63
1981 4095 5.244851 TGCAAAATTGGGATAACTGCTAACA 59.755 36.000 0.00 0.00 0.00 2.41
2036 4150 0.031994 GTCCATTTTGTGCGCAACCT 59.968 50.000 14.00 0.00 33.82 3.50
2090 4268 6.892456 ACCTATCTGTTTATCACTCTCACTGA 59.108 38.462 0.00 0.00 0.00 3.41
2149 4327 1.402968 CTGGATGGTTTGAGAATGCGG 59.597 52.381 0.00 0.00 0.00 5.69
2153 4331 0.597568 TGGTTTGAGAATGCGGCAAG 59.402 50.000 6.82 0.00 0.00 4.01
2160 5007 1.812571 GAGAATGCGGCAAGGAAGAAA 59.187 47.619 6.82 0.00 0.00 2.52
2187 5034 4.005650 TGTTTGCATCAGAGACAGATTCC 58.994 43.478 0.00 0.00 0.00 3.01
2220 5067 2.463876 GTTTCAAAACAGAGCAGCACC 58.536 47.619 0.00 0.00 38.74 5.01
2223 5070 2.555547 AAAACAGAGCAGCACCGGC 61.556 57.895 0.00 0.00 41.61 6.13
2241 5088 1.289066 CGACGCCAACTCTTCTCCA 59.711 57.895 0.00 0.00 0.00 3.86
2242 5089 1.009389 CGACGCCAACTCTTCTCCAC 61.009 60.000 0.00 0.00 0.00 4.02
2279 5126 1.358759 CCATTTTGGCCGGTATCGC 59.641 57.895 1.90 0.00 34.56 4.58
2304 5151 0.687354 TCTTCCTGCTCTTGTGGGTC 59.313 55.000 0.00 0.00 0.00 4.46
2362 5209 1.160329 CGGGGCTGCGAAATCTTAGG 61.160 60.000 0.00 0.00 0.00 2.69
2367 5214 2.488153 GGCTGCGAAATCTTAGGTGTTT 59.512 45.455 0.00 0.00 0.00 2.83
2374 5221 7.471721 TGCGAAATCTTAGGTGTTTATCAATG 58.528 34.615 0.00 0.00 0.00 2.82
2419 5266 6.229936 TCAGTTGTATATACACTTGTCCCC 57.770 41.667 15.20 0.00 35.64 4.81
2473 5320 3.552875 CATCCTCTGCTGTCATTTCCAT 58.447 45.455 0.00 0.00 0.00 3.41
2478 5325 1.938577 CTGCTGTCATTTCCATCCGAG 59.061 52.381 0.00 0.00 0.00 4.63
2520 5368 7.859325 TTACATATTCCTAGCCAAAAGTCAC 57.141 36.000 0.00 0.00 0.00 3.67
2531 5386 3.142951 CCAAAAGTCACGGATTACCACA 58.857 45.455 0.00 0.00 35.59 4.17
2566 5422 2.812591 CCATATCTTGGCTCATGACAGC 59.187 50.000 0.00 0.00 39.09 4.40
2633 5489 3.525844 TTCTTTGCTGCTGCGTGCG 62.526 57.895 11.21 0.00 46.63 5.34
2634 5490 4.318021 CTTTGCTGCTGCGTGCGT 62.318 61.111 11.21 0.00 46.63 5.24
2635 5491 4.610890 TTTGCTGCTGCGTGCGTG 62.611 61.111 11.21 0.00 46.63 5.34
2673 5529 1.135527 GCTGCCAGATTATTGCAAGCA 59.864 47.619 4.94 6.19 34.06 3.91
2675 5531 2.164827 CTGCCAGATTATTGCAAGCACA 59.835 45.455 4.94 0.00 34.06 4.57
2678 5534 4.401837 TGCCAGATTATTGCAAGCACATAA 59.598 37.500 4.94 0.00 30.85 1.90
2683 5539 7.546667 CCAGATTATTGCAAGCACATAAACTTT 59.453 33.333 4.94 0.00 0.00 2.66
2684 5540 8.589629 CAGATTATTGCAAGCACATAAACTTTC 58.410 33.333 4.94 0.00 0.00 2.62
2685 5541 7.761249 AGATTATTGCAAGCACATAAACTTTCC 59.239 33.333 4.94 0.00 0.00 3.13
2686 5542 3.658757 TGCAAGCACATAAACTTTCCC 57.341 42.857 0.00 0.00 0.00 3.97
2687 5543 3.230134 TGCAAGCACATAAACTTTCCCT 58.770 40.909 0.00 0.00 0.00 4.20
2688 5544 3.640967 TGCAAGCACATAAACTTTCCCTT 59.359 39.130 0.00 0.00 0.00 3.95
2689 5545 4.100808 TGCAAGCACATAAACTTTCCCTTT 59.899 37.500 0.00 0.00 0.00 3.11
2690 5546 5.056480 GCAAGCACATAAACTTTCCCTTTT 58.944 37.500 0.00 0.00 0.00 2.27
2691 5547 5.527214 GCAAGCACATAAACTTTCCCTTTTT 59.473 36.000 0.00 0.00 0.00 1.94
2693 5549 6.731292 AGCACATAAACTTTCCCTTTTTCT 57.269 33.333 0.00 0.00 0.00 2.52
2716 6040 1.358877 TGATGAGGTGCAATCGAACG 58.641 50.000 0.00 0.00 0.00 3.95
2734 6058 7.416154 TCGAACGTGATCTGAATTTAGTTTT 57.584 32.000 0.00 0.00 0.00 2.43
2735 6059 7.857569 TCGAACGTGATCTGAATTTAGTTTTT 58.142 30.769 0.00 0.00 0.00 1.94
2736 6060 8.007716 TCGAACGTGATCTGAATTTAGTTTTTC 58.992 33.333 0.00 0.00 0.00 2.29
2737 6061 8.009974 CGAACGTGATCTGAATTTAGTTTTTCT 58.990 33.333 0.00 0.00 0.00 2.52
2765 6089 5.003804 ACCCTGAACTTAGTTACTGCAATG 58.996 41.667 0.00 0.00 0.00 2.82
2766 6090 4.396166 CCCTGAACTTAGTTACTGCAATGG 59.604 45.833 0.00 0.00 0.00 3.16
2767 6091 4.142600 CCTGAACTTAGTTACTGCAATGGC 60.143 45.833 0.00 0.00 41.68 4.40
2790 6147 2.159000 TGACTAGATGCAGGCTGTCATG 60.159 50.000 22.95 14.11 30.78 3.07
2791 6148 1.140452 ACTAGATGCAGGCTGTCATGG 59.860 52.381 22.95 16.09 0.00 3.66
2792 6149 0.471191 TAGATGCAGGCTGTCATGGG 59.529 55.000 22.95 0.00 0.00 4.00
2798 6155 3.255032 GGCTGTCATGGGCCCTAT 58.745 61.111 25.70 12.30 42.30 2.57
2799 6156 1.073897 GGCTGTCATGGGCCCTATC 59.926 63.158 25.70 11.40 42.30 2.08
2800 6157 1.422161 GGCTGTCATGGGCCCTATCT 61.422 60.000 25.70 1.59 42.30 1.98
2801 6158 0.036022 GCTGTCATGGGCCCTATCTC 59.964 60.000 25.70 10.30 0.00 2.75
2802 6159 0.689623 CTGTCATGGGCCCTATCTCC 59.310 60.000 25.70 6.57 0.00 3.71
2807 6164 3.942439 GGGCCCTATCTCCGTGCC 61.942 72.222 17.04 0.00 41.42 5.01
2847 6223 3.517901 TCACCAAAGTCCATCCTACGAAT 59.482 43.478 0.00 0.00 0.00 3.34
2848 6224 4.019681 TCACCAAAGTCCATCCTACGAATT 60.020 41.667 0.00 0.00 0.00 2.17
2849 6225 4.332819 CACCAAAGTCCATCCTACGAATTC 59.667 45.833 0.00 0.00 0.00 2.17
2851 6227 4.811557 CCAAAGTCCATCCTACGAATTCTC 59.188 45.833 3.52 0.00 0.00 2.87
2879 6257 6.373779 CGCTTGCTTTTTGATATACCTATGG 58.626 40.000 0.00 0.00 0.00 2.74
2896 6274 1.603456 TGGCAATGCTCTTTTGACGA 58.397 45.000 4.82 0.00 34.70 4.20
2897 6275 1.266718 TGGCAATGCTCTTTTGACGAC 59.733 47.619 4.82 0.00 34.70 4.34
2898 6276 1.401539 GGCAATGCTCTTTTGACGACC 60.402 52.381 4.82 0.00 0.00 4.79
2900 6278 1.200020 CAATGCTCTTTTGACGACCCC 59.800 52.381 0.00 0.00 0.00 4.95
2911 6289 2.938838 TGACGACCCCAGTTCATTTTT 58.061 42.857 0.00 0.00 0.00 1.94
2930 6308 0.322816 TTGGAGCTGATGTTGGCCTC 60.323 55.000 3.32 0.00 0.00 4.70
2964 6829 5.565723 CGAAAGCTCAACAAAAATCTTGG 57.434 39.130 0.00 0.00 0.00 3.61
2965 6830 4.084900 CGAAAGCTCAACAAAAATCTTGGC 60.085 41.667 0.00 0.00 0.00 4.52
2966 6831 4.677673 AAGCTCAACAAAAATCTTGGCT 57.322 36.364 0.00 0.00 0.00 4.75
2967 6832 5.789643 AAGCTCAACAAAAATCTTGGCTA 57.210 34.783 0.00 0.00 0.00 3.93
2968 6833 5.789643 AGCTCAACAAAAATCTTGGCTAA 57.210 34.783 0.00 0.00 0.00 3.09
2969 6834 6.350629 AGCTCAACAAAAATCTTGGCTAAT 57.649 33.333 0.00 0.00 0.00 1.73
2970 6835 6.393171 AGCTCAACAAAAATCTTGGCTAATC 58.607 36.000 0.00 0.00 0.00 1.75
3024 6889 1.820481 ACGAACCAAACACACCCGG 60.820 57.895 0.00 0.00 0.00 5.73
3025 6890 1.820481 CGAACCAAACACACCCGGT 60.820 57.895 0.00 0.00 0.00 5.28
3026 6891 0.532417 CGAACCAAACACACCCGGTA 60.532 55.000 0.00 0.00 0.00 4.02
3027 6892 0.946528 GAACCAAACACACCCGGTAC 59.053 55.000 0.00 0.00 0.00 3.34
3039 6912 1.211969 CCGGTACCTGTGACGTCTG 59.788 63.158 17.92 6.94 0.00 3.51
3090 6970 2.825836 GTTGGCATGCCTCCTCGG 60.826 66.667 35.53 0.00 36.94 4.63
3101 6981 0.529992 CCTCCTCGGCCGTGTTTATC 60.530 60.000 27.15 0.00 0.00 1.75
3106 6991 1.376166 CGGCCGTGTTTATCACCCA 60.376 57.895 19.50 0.00 43.51 4.51
3114 6999 3.927758 CGTGTTTATCACCCACAACGATA 59.072 43.478 0.00 0.00 43.51 2.92
3168 7067 1.133790 ACGACGGAGCAAGTATGTACC 59.866 52.381 0.00 0.00 0.00 3.34
3171 7070 2.165845 GACGGAGCAAGTATGTACCACT 59.834 50.000 0.00 0.00 0.00 4.00
3172 7071 3.359033 ACGGAGCAAGTATGTACCACTA 58.641 45.455 0.00 0.00 0.00 2.74
3275 7198 4.856801 CGGCCTGAATCCCGTGGG 62.857 72.222 0.00 0.00 39.67 4.61
3313 7240 2.170607 TGATGGAGATTCCCTTCCGTTC 59.829 50.000 0.00 0.00 35.03 3.95
3351 7280 2.551504 GGGACAAGTAAACGGTGGTCAT 60.552 50.000 0.00 0.00 0.00 3.06
3352 7281 2.740447 GGACAAGTAAACGGTGGTCATC 59.260 50.000 0.00 0.00 0.00 2.92
3353 7282 3.395639 GACAAGTAAACGGTGGTCATCA 58.604 45.455 0.00 0.00 0.00 3.07
3354 7283 3.135994 ACAAGTAAACGGTGGTCATCAC 58.864 45.455 0.00 0.00 45.34 3.06
3361 7290 4.073052 GTGGTCATCACCCGCAAA 57.927 55.556 0.00 0.00 42.99 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 9.722056 GTAACAGAGCAAACCATTAATAGATTG 57.278 33.333 0.55 0.55 0.00 2.67
13 14 9.738832 GTTTAAAAGTAACAGAGCAAACCATTA 57.261 29.630 0.00 0.00 0.00 1.90
54 55 5.645497 AGCTAGCCTTTTGTTCTACTTCATG 59.355 40.000 12.13 0.00 0.00 3.07
57 58 7.042335 TCATAGCTAGCCTTTTGTTCTACTTC 58.958 38.462 12.13 0.00 0.00 3.01
63 64 4.572795 GGTCTCATAGCTAGCCTTTTGTTC 59.427 45.833 12.13 0.00 0.00 3.18
158 179 7.251704 AGTTGAGCTGCATTAACATACATAC 57.748 36.000 1.02 0.00 0.00 2.39
160 181 6.375174 TCAAGTTGAGCTGCATTAACATACAT 59.625 34.615 0.08 0.00 0.00 2.29
169 190 2.555757 GTTCCTCAAGTTGAGCTGCATT 59.444 45.455 24.85 0.00 42.98 3.56
172 194 1.889545 AGTTCCTCAAGTTGAGCTGC 58.110 50.000 24.85 16.15 42.98 5.25
248 273 1.538512 CCTTCTTGTGTGCACTCCATG 59.461 52.381 19.41 15.59 0.00 3.66
278 303 1.332195 TGGATCTGCATAGTAGCGCT 58.668 50.000 17.26 17.26 37.31 5.92
288 313 8.036575 CCTTAAAATTCAAGATTTGGATCTGCA 58.963 33.333 0.00 0.00 41.78 4.41
290 315 9.933723 AACCTTAAAATTCAAGATTTGGATCTG 57.066 29.630 0.00 0.00 41.78 2.90
294 319 9.541143 GTGAAACCTTAAAATTCAAGATTTGGA 57.459 29.630 0.00 0.00 35.07 3.53
295 320 8.487176 CGTGAAACCTTAAAATTCAAGATTTGG 58.513 33.333 0.00 0.00 35.47 3.28
298 323 8.082242 CCTCGTGAAACCTTAAAATTCAAGATT 58.918 33.333 11.00 0.00 39.57 2.40
304 329 5.952526 TCCCTCGTGAAACCTTAAAATTC 57.047 39.130 0.00 0.00 0.00 2.17
306 331 5.134661 TGTTCCCTCGTGAAACCTTAAAAT 58.865 37.500 0.00 0.00 0.00 1.82
307 332 4.525024 TGTTCCCTCGTGAAACCTTAAAA 58.475 39.130 0.00 0.00 0.00 1.52
309 334 3.842007 TGTTCCCTCGTGAAACCTTAA 57.158 42.857 0.00 0.00 0.00 1.85
321 346 4.395231 GGTAACACAATAGCTTGTTCCCTC 59.605 45.833 4.81 0.00 43.05 4.30
329 354 4.142004 CCTCTACGGGTAACACAATAGCTT 60.142 45.833 0.00 0.00 39.74 3.74
331 356 3.714391 CCTCTACGGGTAACACAATAGC 58.286 50.000 0.00 0.00 39.74 2.97
355 380 4.345257 ACAGATACAGGTAGCCCTTACATG 59.655 45.833 0.00 0.00 46.67 3.21
471 520 8.883731 CATACTACACAAGAAAACTGGGAATAG 58.116 37.037 0.00 0.00 0.00 1.73
473 522 6.151144 GCATACTACACAAGAAAACTGGGAAT 59.849 38.462 0.00 0.00 0.00 3.01
525 660 1.312815 GTGAATATGCACTCCTGGCC 58.687 55.000 6.58 0.00 35.91 5.36
526 661 2.042686 TGTGAATATGCACTCCTGGC 57.957 50.000 15.07 0.00 39.49 4.85
527 662 4.458397 AGAATGTGAATATGCACTCCTGG 58.542 43.478 15.07 0.00 39.49 4.45
528 663 4.210746 CGAGAATGTGAATATGCACTCCTG 59.789 45.833 15.07 0.00 39.49 3.86
529 664 4.141846 ACGAGAATGTGAATATGCACTCCT 60.142 41.667 15.07 8.77 39.49 3.69
534 710 4.094739 CACCAACGAGAATGTGAATATGCA 59.905 41.667 0.00 0.00 0.00 3.96
544 720 2.030007 ACCATTTGCACCAACGAGAATG 60.030 45.455 0.00 0.00 0.00 2.67
591 767 1.771255 AGTGCTCCTGTTTCTCAAGGT 59.229 47.619 0.00 0.00 0.00 3.50
592 768 2.421619 GAGTGCTCCTGTTTCTCAAGG 58.578 52.381 0.00 0.00 0.00 3.61
613 869 5.907207 TCTTGATGAGAATTCCGACCTAAG 58.093 41.667 0.65 1.30 0.00 2.18
668 933 4.262506 CGGAGGGAGTAGTTTTGTTTCTCT 60.263 45.833 0.00 0.00 0.00 3.10
669 934 3.995048 CGGAGGGAGTAGTTTTGTTTCTC 59.005 47.826 0.00 0.00 0.00 2.87
675 940 2.302157 AGGAACGGAGGGAGTAGTTTTG 59.698 50.000 0.00 0.00 0.00 2.44
685 950 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
686 951 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
687 952 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
688 953 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
689 954 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
713 978 9.302345 CGTATGTAGTAGTCATTTGAAATGTCT 57.698 33.333 18.62 18.62 0.00 3.41
714 979 8.540492 CCGTATGTAGTAGTCATTTGAAATGTC 58.460 37.037 16.62 11.74 0.00 3.06
715 980 8.255206 TCCGTATGTAGTAGTCATTTGAAATGT 58.745 33.333 16.62 2.38 0.00 2.71
716 981 8.642908 TCCGTATGTAGTAGTCATTTGAAATG 57.357 34.615 11.54 11.54 0.00 2.32
717 982 9.261180 CATCCGTATGTAGTAGTCATTTGAAAT 57.739 33.333 0.00 0.00 0.00 2.17
718 983 8.255206 ACATCCGTATGTAGTAGTCATTTGAAA 58.745 33.333 0.00 0.00 44.66 2.69
719 984 7.778083 ACATCCGTATGTAGTAGTCATTTGAA 58.222 34.615 0.00 0.00 44.66 2.69
720 985 7.342769 ACATCCGTATGTAGTAGTCATTTGA 57.657 36.000 0.00 0.00 44.66 2.69
763 1028 4.390297 GGAGCAAAGTGAGTGAATCTACAC 59.610 45.833 0.00 0.00 40.60 2.90
764 1029 4.569943 GGAGCAAAGTGAGTGAATCTACA 58.430 43.478 0.00 0.00 0.00 2.74
765 1030 3.614616 CGGAGCAAAGTGAGTGAATCTAC 59.385 47.826 0.00 0.00 0.00 2.59
766 1031 3.258372 ACGGAGCAAAGTGAGTGAATCTA 59.742 43.478 0.00 0.00 0.00 1.98
767 1032 2.037772 ACGGAGCAAAGTGAGTGAATCT 59.962 45.455 0.00 0.00 0.00 2.40
768 1033 2.417719 ACGGAGCAAAGTGAGTGAATC 58.582 47.619 0.00 0.00 0.00 2.52
769 1034 2.550830 ACGGAGCAAAGTGAGTGAAT 57.449 45.000 0.00 0.00 0.00 2.57
770 1035 3.244078 ACATACGGAGCAAAGTGAGTGAA 60.244 43.478 0.00 0.00 0.00 3.18
771 1036 2.299013 ACATACGGAGCAAAGTGAGTGA 59.701 45.455 0.00 0.00 0.00 3.41
772 1037 2.688507 ACATACGGAGCAAAGTGAGTG 58.311 47.619 0.00 0.00 0.00 3.51
773 1038 3.510360 ACTACATACGGAGCAAAGTGAGT 59.490 43.478 0.00 0.00 0.00 3.41
774 1039 4.111375 ACTACATACGGAGCAAAGTGAG 57.889 45.455 0.00 0.00 0.00 3.51
775 1040 4.530710 AACTACATACGGAGCAAAGTGA 57.469 40.909 0.00 0.00 0.00 3.41
776 1041 5.408356 AGTAACTACATACGGAGCAAAGTG 58.592 41.667 0.00 0.00 0.00 3.16
777 1042 5.656213 AGTAACTACATACGGAGCAAAGT 57.344 39.130 0.00 0.00 0.00 2.66
778 1043 5.867716 ACAAGTAACTACATACGGAGCAAAG 59.132 40.000 0.00 0.00 0.00 2.77
779 1044 5.786311 ACAAGTAACTACATACGGAGCAAA 58.214 37.500 0.00 0.00 0.00 3.68
780 1045 5.395682 ACAAGTAACTACATACGGAGCAA 57.604 39.130 0.00 0.00 0.00 3.91
781 1046 5.047872 TCAACAAGTAACTACATACGGAGCA 60.048 40.000 0.00 0.00 0.00 4.26
782 1047 5.404946 TCAACAAGTAACTACATACGGAGC 58.595 41.667 0.00 0.00 0.00 4.70
783 1048 7.878477 TTTCAACAAGTAACTACATACGGAG 57.122 36.000 0.00 0.00 0.00 4.63
784 1049 7.148540 GCATTTCAACAAGTAACTACATACGGA 60.149 37.037 0.00 0.00 0.00 4.69
785 1050 6.959311 GCATTTCAACAAGTAACTACATACGG 59.041 38.462 0.00 0.00 0.00 4.02
786 1051 7.514805 TGCATTTCAACAAGTAACTACATACG 58.485 34.615 0.00 0.00 0.00 3.06
787 1052 9.672086 TTTGCATTTCAACAAGTAACTACATAC 57.328 29.630 0.00 0.00 33.73 2.39
788 1053 9.891828 CTTTGCATTTCAACAAGTAACTACATA 57.108 29.630 0.00 0.00 33.73 2.29
789 1054 8.629158 TCTTTGCATTTCAACAAGTAACTACAT 58.371 29.630 0.00 0.00 33.73 2.29
790 1055 7.913297 GTCTTTGCATTTCAACAAGTAACTACA 59.087 33.333 0.00 0.00 33.73 2.74
791 1056 7.913297 TGTCTTTGCATTTCAACAAGTAACTAC 59.087 33.333 0.00 0.00 33.73 2.73
792 1057 7.990917 TGTCTTTGCATTTCAACAAGTAACTA 58.009 30.769 0.00 0.00 33.73 2.24
793 1058 6.862209 TGTCTTTGCATTTCAACAAGTAACT 58.138 32.000 0.00 0.00 33.73 2.24
794 1059 7.275560 ACTTGTCTTTGCATTTCAACAAGTAAC 59.724 33.333 21.76 5.04 45.32 2.50
795 1060 7.319646 ACTTGTCTTTGCATTTCAACAAGTAA 58.680 30.769 21.76 7.55 45.32 2.24
796 1061 6.862209 ACTTGTCTTTGCATTTCAACAAGTA 58.138 32.000 21.76 1.75 45.32 2.24
797 1062 5.723295 ACTTGTCTTTGCATTTCAACAAGT 58.277 33.333 19.39 19.39 43.78 3.16
798 1063 7.935338 ATACTTGTCTTTGCATTTCAACAAG 57.065 32.000 18.51 18.51 42.48 3.16
799 1064 8.715191 AAATACTTGTCTTTGCATTTCAACAA 57.285 26.923 0.00 0.00 33.73 2.83
800 1065 9.462174 CTAAATACTTGTCTTTGCATTTCAACA 57.538 29.630 0.00 0.00 33.73 3.33
801 1066 8.915654 CCTAAATACTTGTCTTTGCATTTCAAC 58.084 33.333 0.00 0.00 33.73 3.18
802 1067 8.855110 TCCTAAATACTTGTCTTTGCATTTCAA 58.145 29.630 0.00 0.00 0.00 2.69
803 1068 8.402798 TCCTAAATACTTGTCTTTGCATTTCA 57.597 30.769 0.00 0.00 0.00 2.69
804 1069 9.860898 ATTCCTAAATACTTGTCTTTGCATTTC 57.139 29.630 0.00 0.00 0.00 2.17
805 1070 9.643693 CATTCCTAAATACTTGTCTTTGCATTT 57.356 29.630 0.00 0.00 0.00 2.32
806 1071 8.253113 CCATTCCTAAATACTTGTCTTTGCATT 58.747 33.333 0.00 0.00 0.00 3.56
807 1072 7.615365 TCCATTCCTAAATACTTGTCTTTGCAT 59.385 33.333 0.00 0.00 0.00 3.96
808 1073 6.945435 TCCATTCCTAAATACTTGTCTTTGCA 59.055 34.615 0.00 0.00 0.00 4.08
809 1074 7.391148 TCCATTCCTAAATACTTGTCTTTGC 57.609 36.000 0.00 0.00 0.00 3.68
810 1075 7.067494 CCCTCCATTCCTAAATACTTGTCTTTG 59.933 40.741 0.00 0.00 0.00 2.77
811 1076 7.036863 TCCCTCCATTCCTAAATACTTGTCTTT 60.037 37.037 0.00 0.00 0.00 2.52
812 1077 6.447084 TCCCTCCATTCCTAAATACTTGTCTT 59.553 38.462 0.00 0.00 0.00 3.01
813 1078 5.970640 TCCCTCCATTCCTAAATACTTGTCT 59.029 40.000 0.00 0.00 0.00 3.41
814 1079 6.126739 ACTCCCTCCATTCCTAAATACTTGTC 60.127 42.308 0.00 0.00 0.00 3.18
815 1080 5.731678 ACTCCCTCCATTCCTAAATACTTGT 59.268 40.000 0.00 0.00 0.00 3.16
816 1081 6.253946 ACTCCCTCCATTCCTAAATACTTG 57.746 41.667 0.00 0.00 0.00 3.16
817 1082 8.582891 AATACTCCCTCCATTCCTAAATACTT 57.417 34.615 0.00 0.00 0.00 2.24
818 1083 8.582891 AAATACTCCCTCCATTCCTAAATACT 57.417 34.615 0.00 0.00 0.00 2.12
819 1084 9.642343 AAAAATACTCCCTCCATTCCTAAATAC 57.358 33.333 0.00 0.00 0.00 1.89
820 1085 9.862149 GAAAAATACTCCCTCCATTCCTAAATA 57.138 33.333 0.00 0.00 0.00 1.40
821 1086 8.569596 AGAAAAATACTCCCTCCATTCCTAAAT 58.430 33.333 0.00 0.00 0.00 1.40
822 1087 7.939781 AGAAAAATACTCCCTCCATTCCTAAA 58.060 34.615 0.00 0.00 0.00 1.85
823 1088 7.406151 AGAGAAAAATACTCCCTCCATTCCTAA 59.594 37.037 0.00 0.00 35.27 2.69
824 1089 6.909158 AGAGAAAAATACTCCCTCCATTCCTA 59.091 38.462 0.00 0.00 35.27 2.94
825 1090 5.733647 AGAGAAAAATACTCCCTCCATTCCT 59.266 40.000 0.00 0.00 35.27 3.36
826 1091 6.007485 AGAGAAAAATACTCCCTCCATTCC 57.993 41.667 0.00 0.00 35.27 3.01
827 1092 6.258947 CGAAGAGAAAAATACTCCCTCCATTC 59.741 42.308 0.00 0.00 35.27 2.67
828 1093 6.070194 TCGAAGAGAAAAATACTCCCTCCATT 60.070 38.462 0.00 0.00 35.27 3.16
829 1094 5.425539 TCGAAGAGAAAAATACTCCCTCCAT 59.574 40.000 0.00 0.00 35.27 3.41
830 1095 4.775780 TCGAAGAGAAAAATACTCCCTCCA 59.224 41.667 0.00 0.00 35.27 3.86
831 1096 5.340439 TCGAAGAGAAAAATACTCCCTCC 57.660 43.478 0.00 0.00 35.27 4.30
850 1115 1.152652 GATCAGGAGGGGCTCTCGA 60.153 63.158 8.58 0.84 43.34 4.04
859 1124 0.548510 GGGGTTTCAGGATCAGGAGG 59.451 60.000 0.00 0.00 0.00 4.30
890 1155 4.114997 TGCGATGACGAGCTGCGA 62.115 61.111 11.64 0.00 44.57 5.10
900 1165 1.960763 ACTTTGCTGCGTGCGATGA 60.961 52.632 10.27 0.00 46.63 2.92
901 1166 1.794785 CACTTTGCTGCGTGCGATG 60.795 57.895 0.00 1.07 46.63 3.84
902 1167 2.557805 CACTTTGCTGCGTGCGAT 59.442 55.556 0.00 0.00 46.63 4.58
942 1207 2.089980 TGGTTCAGTAGTCTAGTCGGC 58.910 52.381 0.00 0.00 0.00 5.54
1076 1774 4.273257 GGAGTAGAGAGGCCGCGC 62.273 72.222 0.00 0.95 0.00 6.86
1162 1860 0.253020 GGTAAGGAAGGGGGTGAGGA 60.253 60.000 0.00 0.00 0.00 3.71
1163 1861 1.279749 GGGTAAGGAAGGGGGTGAGG 61.280 65.000 0.00 0.00 0.00 3.86
1164 1862 0.253207 AGGGTAAGGAAGGGGGTGAG 60.253 60.000 0.00 0.00 0.00 3.51
1165 1863 1.009183 CTAGGGTAAGGAAGGGGGTGA 59.991 57.143 0.00 0.00 0.00 4.02
1166 1864 1.508256 CTAGGGTAAGGAAGGGGGTG 58.492 60.000 0.00 0.00 0.00 4.61
1167 1865 0.327287 GCTAGGGTAAGGAAGGGGGT 60.327 60.000 0.00 0.00 0.00 4.95
1225 1923 3.631227 AGAGCGTAACTACTGATGGTACC 59.369 47.826 4.43 4.43 0.00 3.34
1226 1924 4.897025 AGAGCGTAACTACTGATGGTAC 57.103 45.455 0.00 0.00 0.00 3.34
1233 1937 2.286301 GCGGAGTAGAGCGTAACTACTG 60.286 54.545 17.72 9.37 46.74 2.74
1239 1943 3.104766 CGGCGGAGTAGAGCGTAA 58.895 61.111 0.00 0.00 0.00 3.18
1242 1946 3.701604 AAAGCGGCGGAGTAGAGCG 62.702 63.158 9.78 0.00 0.00 5.03
1270 3296 2.163412 GCCGCAACTCCAAATACATCAA 59.837 45.455 0.00 0.00 0.00 2.57
1271 3297 1.742831 GCCGCAACTCCAAATACATCA 59.257 47.619 0.00 0.00 0.00 3.07
1272 3298 1.268032 CGCCGCAACTCCAAATACATC 60.268 52.381 0.00 0.00 0.00 3.06
1273 3299 0.732571 CGCCGCAACTCCAAATACAT 59.267 50.000 0.00 0.00 0.00 2.29
1274 3300 1.302383 CCGCCGCAACTCCAAATACA 61.302 55.000 0.00 0.00 0.00 2.29
1322 3348 3.127533 CTTTCTTCCCCTGCGCCG 61.128 66.667 4.18 0.00 0.00 6.46
1325 3351 2.044946 CCCCTTTCTTCCCCTGCG 60.045 66.667 0.00 0.00 0.00 5.18
1348 3378 4.041198 ACGAAAACCTACAGATCCCAGAAA 59.959 41.667 0.00 0.00 0.00 2.52
1354 3384 5.069501 ACACTACGAAAACCTACAGATCC 57.930 43.478 0.00 0.00 0.00 3.36
1369 3399 2.612212 AGTTGGTTTCTGCAACACTACG 59.388 45.455 0.00 0.00 37.07 3.51
1385 3429 4.916983 TGTTGTCAATTCTTCCAGTTGG 57.083 40.909 0.00 0.00 0.00 3.77
1386 3430 6.615088 CCTATGTTGTCAATTCTTCCAGTTG 58.385 40.000 0.00 0.00 0.00 3.16
1392 3436 4.336713 GGGAGCCTATGTTGTCAATTCTTC 59.663 45.833 0.00 0.00 0.00 2.87
1403 3447 1.566231 CAAGAAGGGGGAGCCTATGTT 59.434 52.381 0.00 0.00 0.00 2.71
1409 3453 2.730129 TTTGGCAAGAAGGGGGAGCC 62.730 60.000 0.00 0.00 45.41 4.70
1413 3457 1.351076 ATTGTTTGGCAAGAAGGGGG 58.649 50.000 0.00 0.00 40.86 5.40
1414 3458 3.617288 GCTAATTGTTTGGCAAGAAGGGG 60.617 47.826 0.00 0.00 40.86 4.79
1415 3459 3.259123 AGCTAATTGTTTGGCAAGAAGGG 59.741 43.478 0.00 0.00 41.45 3.95
1416 3460 4.240096 CAGCTAATTGTTTGGCAAGAAGG 58.760 43.478 0.00 0.00 41.45 3.46
1421 3465 2.063156 CGCAGCTAATTGTTTGGCAA 57.937 45.000 0.00 0.00 41.45 4.52
1439 3483 1.722011 ACGTATTTCCAAGACTGGCG 58.278 50.000 0.00 0.00 43.17 5.69
1457 3501 6.311445 CGGGATAAATCACTGTGATATGCTAC 59.689 42.308 22.53 11.81 35.76 3.58
1460 3504 4.997395 ACGGGATAAATCACTGTGATATGC 59.003 41.667 22.53 17.40 35.76 3.14
1467 3511 3.270877 GAAGCACGGGATAAATCACTGT 58.729 45.455 0.00 0.00 0.00 3.55
1468 3512 3.270027 TGAAGCACGGGATAAATCACTG 58.730 45.455 0.00 0.00 0.00 3.66
1476 3520 1.140652 TGCATCATGAAGCACGGGATA 59.859 47.619 20.99 0.00 35.51 2.59
1500 3544 6.383436 AGGTATTCCTAAGACTGAGTTAACCC 59.617 42.308 0.88 0.00 43.12 4.11
1555 3608 8.934023 TTTCTCCTTTACCAAAATCAGTGTAT 57.066 30.769 0.00 0.00 0.00 2.29
1558 3611 7.940850 TCTTTTCTCCTTTACCAAAATCAGTG 58.059 34.615 0.00 0.00 0.00 3.66
1577 3631 5.472820 CCTCCAGGCATTCTATGATCTTTTC 59.527 44.000 0.00 0.00 0.00 2.29
1597 3653 2.904434 TCCTACTGTGTTTCCTTCCTCC 59.096 50.000 0.00 0.00 0.00 4.30
1601 3657 4.652822 ACCAATCCTACTGTGTTTCCTTC 58.347 43.478 0.00 0.00 0.00 3.46
1604 3660 5.784578 AAAACCAATCCTACTGTGTTTCC 57.215 39.130 0.00 0.00 0.00 3.13
1607 3663 6.195600 TCCTAAAACCAATCCTACTGTGTT 57.804 37.500 0.00 0.00 0.00 3.32
1608 3664 5.836024 TCCTAAAACCAATCCTACTGTGT 57.164 39.130 0.00 0.00 0.00 3.72
1622 3714 9.556030 GATTGCACTTGTACTAATTCCTAAAAC 57.444 33.333 0.00 0.00 0.00 2.43
1623 3715 8.736244 GGATTGCACTTGTACTAATTCCTAAAA 58.264 33.333 0.00 0.00 0.00 1.52
1638 3742 2.278849 TGCATGGGGATTGCACTTG 58.721 52.632 0.00 0.00 44.73 3.16
1654 3758 2.032681 AGAAGCCGGTTCCAGTGC 59.967 61.111 1.90 0.00 35.51 4.40
1655 3759 2.328099 GCAGAAGCCGGTTCCAGTG 61.328 63.158 1.90 2.19 35.51 3.66
1677 3782 3.084039 CAGCATGAACTGGGTATGTTGT 58.916 45.455 0.00 0.00 39.69 3.32
1771 3877 3.390870 GACGAACAGTAACGTGCTGCG 62.391 57.143 17.10 15.47 42.74 5.18
1805 3911 5.767816 AAATATAACGATTGGGAGCAACC 57.232 39.130 0.00 0.00 38.08 3.77
1806 3912 7.724305 TCTAAATATAACGATTGGGAGCAAC 57.276 36.000 0.00 0.00 0.00 4.17
1981 4095 7.168219 TCTAACATGTAGGTGATTCTTTTGCT 58.832 34.615 0.00 0.00 0.00 3.91
2036 4150 7.230849 ACTCAAATATTTTCAAGTGGCATGA 57.769 32.000 0.00 0.00 0.00 3.07
2149 4327 3.636381 CAAACAGAGCTTTCTTCCTTGC 58.364 45.455 0.00 0.00 0.00 4.01
2153 4331 3.254166 TGATGCAAACAGAGCTTTCTTCC 59.746 43.478 0.00 0.00 0.00 3.46
2178 5025 0.105039 CGGTGCTAGGGGAATCTGTC 59.895 60.000 0.00 0.00 0.00 3.51
2179 5026 0.325296 TCGGTGCTAGGGGAATCTGT 60.325 55.000 0.00 0.00 0.00 3.41
2187 5034 0.323629 TTGAAACCTCGGTGCTAGGG 59.676 55.000 0.00 0.00 38.54 3.53
2223 5070 1.009389 GTGGAGAAGAGTTGGCGTCG 61.009 60.000 0.00 0.00 0.00 5.12
2231 5078 1.903877 CGGGCCATGTGGAGAAGAGT 61.904 60.000 4.39 0.00 37.39 3.24
2233 5080 2.989639 CGGGCCATGTGGAGAAGA 59.010 61.111 4.39 0.00 37.39 2.87
2259 5106 0.661020 CGATACCGGCCAAAATGGTC 59.339 55.000 0.00 0.00 40.46 4.02
2279 5126 2.547211 CACAAGAGCAGGAAGAACACAG 59.453 50.000 0.00 0.00 0.00 3.66
2304 5151 2.608998 CCAGGTGAAGATCGATCCGATG 60.609 54.545 21.66 11.63 47.00 3.84
2367 5214 7.071196 AGGTGCAGAACTATCCTAACATTGATA 59.929 37.037 0.00 0.00 0.00 2.15
2374 5221 5.938125 TGAAAAGGTGCAGAACTATCCTAAC 59.062 40.000 0.00 0.00 0.00 2.34
2419 5266 1.003116 GCTATCATCAAACAGCAGCCG 60.003 52.381 0.00 0.00 34.13 5.52
2497 5345 6.046593 CGTGACTTTTGGCTAGGAATATGTA 58.953 40.000 0.00 0.00 0.00 2.29
2502 5350 2.304761 TCCGTGACTTTTGGCTAGGAAT 59.695 45.455 0.00 0.00 32.52 3.01
2505 5353 2.403252 ATCCGTGACTTTTGGCTAGG 57.597 50.000 0.00 0.00 0.00 3.02
2515 5363 1.968493 ACAGTGTGGTAATCCGTGACT 59.032 47.619 0.00 0.00 36.30 3.41
2520 5368 6.018994 GCTAGAAATAACAGTGTGGTAATCCG 60.019 42.308 0.00 0.00 36.30 4.18
2566 5422 7.973388 TGTCTTTCTCCAAAATAACAACACTTG 59.027 33.333 0.00 0.00 0.00 3.16
2636 5492 0.452987 AGCAACAATAGGCACGCATG 59.547 50.000 0.00 0.00 0.00 4.06
2637 5493 0.452987 CAGCAACAATAGGCACGCAT 59.547 50.000 0.00 0.00 0.00 4.73
2638 5494 1.875262 CAGCAACAATAGGCACGCA 59.125 52.632 0.00 0.00 0.00 5.24
2639 5495 1.514873 GCAGCAACAATAGGCACGC 60.515 57.895 0.00 0.00 0.00 5.34
2640 5496 1.137404 GGCAGCAACAATAGGCACG 59.863 57.895 0.00 0.00 0.00 5.34
2678 5534 8.588472 CCTCATCAATAAGAAAAAGGGAAAGTT 58.412 33.333 0.00 0.00 0.00 2.66
2683 5539 5.418840 GCACCTCATCAATAAGAAAAAGGGA 59.581 40.000 0.00 0.00 31.19 4.20
2684 5540 5.185635 TGCACCTCATCAATAAGAAAAAGGG 59.814 40.000 0.00 0.00 31.19 3.95
2685 5541 6.271488 TGCACCTCATCAATAAGAAAAAGG 57.729 37.500 0.00 0.00 32.46 3.11
2686 5542 7.219535 CGATTGCACCTCATCAATAAGAAAAAG 59.780 37.037 0.00 0.00 33.49 2.27
2687 5543 7.028962 CGATTGCACCTCATCAATAAGAAAAA 58.971 34.615 0.00 0.00 33.49 1.94
2688 5544 6.374053 TCGATTGCACCTCATCAATAAGAAAA 59.626 34.615 0.00 0.00 33.49 2.29
2689 5545 5.879777 TCGATTGCACCTCATCAATAAGAAA 59.120 36.000 0.00 0.00 33.49 2.52
2690 5546 5.427378 TCGATTGCACCTCATCAATAAGAA 58.573 37.500 0.00 0.00 33.49 2.52
2691 5547 5.022282 TCGATTGCACCTCATCAATAAGA 57.978 39.130 0.00 0.00 33.49 2.10
2693 5549 4.033932 CGTTCGATTGCACCTCATCAATAA 59.966 41.667 0.00 0.00 33.49 1.40
2734 6058 9.333724 CAGTAACTAAGTTCAGGGTAAAAAGAA 57.666 33.333 0.00 0.00 0.00 2.52
2735 6059 7.443272 GCAGTAACTAAGTTCAGGGTAAAAAGA 59.557 37.037 0.00 0.00 0.00 2.52
2736 6060 7.227910 TGCAGTAACTAAGTTCAGGGTAAAAAG 59.772 37.037 0.00 0.00 0.00 2.27
2737 6061 7.055378 TGCAGTAACTAAGTTCAGGGTAAAAA 58.945 34.615 0.00 0.00 0.00 1.94
2742 6066 4.699925 TTGCAGTAACTAAGTTCAGGGT 57.300 40.909 0.00 0.00 0.00 4.34
2743 6067 4.396166 CCATTGCAGTAACTAAGTTCAGGG 59.604 45.833 0.00 0.00 0.00 4.45
2767 6091 2.159000 TGACAGCCTGCATCTAGTCATG 60.159 50.000 7.76 0.00 31.72 3.07
2768 6092 2.113807 TGACAGCCTGCATCTAGTCAT 58.886 47.619 7.76 0.00 31.72 3.06
2769 6093 1.560505 TGACAGCCTGCATCTAGTCA 58.439 50.000 7.76 7.76 34.02 3.41
2770 6094 2.481854 CATGACAGCCTGCATCTAGTC 58.518 52.381 0.00 0.00 0.00 2.59
2771 6095 1.140452 CCATGACAGCCTGCATCTAGT 59.860 52.381 0.00 0.00 0.00 2.57
2772 6096 1.542767 CCCATGACAGCCTGCATCTAG 60.543 57.143 0.00 0.00 0.00 2.43
2774 6098 1.226542 CCCATGACAGCCTGCATCT 59.773 57.895 0.00 0.00 0.00 2.90
2790 6147 3.942439 GGCACGGAGATAGGGCCC 61.942 72.222 16.46 16.46 38.70 5.80
2791 6148 2.844839 AGGCACGGAGATAGGGCC 60.845 66.667 0.48 0.48 44.92 5.80
2792 6149 1.972660 AACAGGCACGGAGATAGGGC 61.973 60.000 0.00 0.00 0.00 5.19
2794 6151 0.179073 CCAACAGGCACGGAGATAGG 60.179 60.000 0.00 0.00 0.00 2.57
2795 6152 0.537188 ACCAACAGGCACGGAGATAG 59.463 55.000 0.00 0.00 0.00 2.08
2796 6153 0.249120 CACCAACAGGCACGGAGATA 59.751 55.000 0.00 0.00 0.00 1.98
2797 6154 1.003355 CACCAACAGGCACGGAGAT 60.003 57.895 0.00 0.00 0.00 2.75
2798 6155 1.978455 AACACCAACAGGCACGGAGA 61.978 55.000 0.00 0.00 0.00 3.71
2799 6156 1.101049 AAACACCAACAGGCACGGAG 61.101 55.000 0.00 0.00 0.00 4.63
2800 6157 1.077357 AAACACCAACAGGCACGGA 60.077 52.632 0.00 0.00 0.00 4.69
2801 6158 1.065600 CAAACACCAACAGGCACGG 59.934 57.895 0.00 0.00 0.00 4.94
2802 6159 1.065600 CCAAACACCAACAGGCACG 59.934 57.895 0.00 0.00 0.00 5.34
2807 6164 3.705604 GTGACAATCCAAACACCAACAG 58.294 45.455 0.00 0.00 0.00 3.16
2830 6187 4.401519 TCGAGAATTCGTAGGATGGACTTT 59.598 41.667 0.00 0.00 46.72 2.66
2835 6192 2.604855 CGGTCGAGAATTCGTAGGATGG 60.605 54.545 0.00 0.00 46.72 3.51
2847 6223 1.002900 CAAAAAGCAAGCGGTCGAGAA 60.003 47.619 0.00 0.00 0.00 2.87
2848 6224 0.586319 CAAAAAGCAAGCGGTCGAGA 59.414 50.000 0.00 0.00 0.00 4.04
2849 6225 0.586319 TCAAAAAGCAAGCGGTCGAG 59.414 50.000 0.00 0.00 0.00 4.04
2851 6227 2.892373 TATCAAAAAGCAAGCGGTCG 57.108 45.000 0.00 0.00 0.00 4.79
2853 6229 4.270008 AGGTATATCAAAAAGCAAGCGGT 58.730 39.130 0.00 0.00 0.00 5.68
2854 6230 4.900635 AGGTATATCAAAAAGCAAGCGG 57.099 40.909 0.00 0.00 0.00 5.52
2857 6233 7.275888 TGCCATAGGTATATCAAAAAGCAAG 57.724 36.000 0.00 0.00 0.00 4.01
2879 6257 1.401539 GGGTCGTCAAAAGAGCATTGC 60.402 52.381 0.00 0.00 37.81 3.56
2911 6289 0.322816 GAGGCCAACATCAGCTCCAA 60.323 55.000 5.01 0.00 0.00 3.53
2913 6291 0.034670 AAGAGGCCAACATCAGCTCC 60.035 55.000 5.01 0.00 0.00 4.70
2930 6308 0.524862 AGCTTTCGCTTGCCATGAAG 59.475 50.000 0.00 0.00 46.47 3.02
2952 6817 7.765695 TTCTGAGATTAGCCAAGATTTTTGT 57.234 32.000 0.00 0.00 0.00 2.83
3024 6889 2.351157 GGTACACAGACGTCACAGGTAC 60.351 54.545 19.50 20.74 0.00 3.34
3025 6890 1.881973 GGTACACAGACGTCACAGGTA 59.118 52.381 19.50 11.28 0.00 3.08
3026 6891 0.672342 GGTACACAGACGTCACAGGT 59.328 55.000 19.50 12.27 0.00 4.00
3027 6892 0.671796 TGGTACACAGACGTCACAGG 59.328 55.000 19.50 6.66 0.00 4.00
3039 6912 1.134670 GTGGCCTCTGATCTGGTACAC 60.135 57.143 3.32 6.88 0.00 2.90
3049 6922 0.611896 TGATCGAGTGTGGCCTCTGA 60.612 55.000 3.32 0.00 0.00 3.27
3101 6981 3.621268 CCAAGTACATATCGTTGTGGGTG 59.379 47.826 0.00 0.00 0.00 4.61
3106 6991 6.032956 TCTGTTCCAAGTACATATCGTTGT 57.967 37.500 0.00 0.00 0.00 3.32
3114 6999 5.710984 CGAGTAACTCTGTTCCAAGTACAT 58.289 41.667 0.00 0.00 0.00 2.29
3168 7067 1.129998 CGTGGAGTGGAGTACGTAGTG 59.870 57.143 7.86 0.00 45.73 2.74
3171 7070 1.308069 GCCGTGGAGTGGAGTACGTA 61.308 60.000 0.00 0.00 34.96 3.57
3172 7071 2.633509 GCCGTGGAGTGGAGTACGT 61.634 63.158 0.00 0.00 34.96 3.57
3275 7198 2.352457 ATCATCGCTCGTCGTCGC 60.352 61.111 0.00 0.00 39.67 5.19
3276 7199 0.384849 ATCATCATCGCTCGTCGTCG 60.385 55.000 0.00 0.00 39.67 5.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.