Multiple sequence alignment - TraesCS5A01G484800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G484800 chr5A 100.000 2518 0 0 1 2518 656046198 656043681 0.000000e+00 4650.0
1 TraesCS5A01G484800 chr5A 100.000 38 0 0 1683 1720 656044482 656044445 1.250000e-08 71.3
2 TraesCS5A01G484800 chr5A 100.000 38 0 0 1717 1754 656044516 656044479 1.250000e-08 71.3
3 TraesCS5A01G484800 chr5D 89.375 1760 134 27 1 1721 528216507 528214762 0.000000e+00 2165.0
4 TraesCS5A01G484800 chr5D 92.714 398 15 9 1717 2106 528214800 528214409 1.690000e-156 562.0
5 TraesCS5A01G484800 chr5D 91.837 49 4 0 2126 2174 528214409 528214361 4.490000e-08 69.4
6 TraesCS5A01G484800 chr5B 87.809 1214 77 41 539 1720 664980971 664979797 0.000000e+00 1356.0
7 TraesCS5A01G484800 chr5B 85.618 445 48 8 1 445 664981480 664981052 1.060000e-123 453.0
8 TraesCS5A01G484800 chr5B 89.181 342 19 12 1717 2048 664979834 664979501 6.480000e-111 411.0
9 TraesCS5A01G484800 chr4A 84.507 71 7 4 225 293 645072483 645072551 1.620000e-07 67.6
10 TraesCS5A01G484800 chr1D 92.500 40 2 1 2416 2455 486895996 486896034 3.500000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G484800 chr5A 656043681 656046198 2517 True 1597.533333 4650 100.000000 1 2518 3 chr5A.!!$R1 2517
1 TraesCS5A01G484800 chr5D 528214361 528216507 2146 True 932.133333 2165 91.308667 1 2174 3 chr5D.!!$R1 2173
2 TraesCS5A01G484800 chr5B 664979501 664981480 1979 True 740.000000 1356 87.536000 1 2048 3 chr5B.!!$R1 2047

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
526 528 0.032813 ATCCCTGGCAAGTTCATGGG 60.033 55.0 0.0 0.0 36.14 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2478 2567 0.029035 CCTTGTAGTCCGTCGATCCG 59.971 60.0 0.0 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 1.062428 ACTATGGACCGGATGAAGGGA 60.062 52.381 9.46 0.00 0.00 4.20
75 76 0.818296 GGAGAGCACCGTCATGTACT 59.182 55.000 0.00 0.00 0.00 2.73
78 79 0.389817 GAGCACCGTCATGTACTGCA 60.390 55.000 4.14 0.00 32.95 4.41
107 108 4.260985 TCAACATCGCCAACAACATCTAT 58.739 39.130 0.00 0.00 0.00 1.98
166 167 1.130561 GGCTACAATGAAGCGGTTGTC 59.869 52.381 3.70 0.00 41.03 3.18
168 169 1.393539 CTACAATGAAGCGGTTGTCGG 59.606 52.381 3.70 0.00 39.18 4.79
181 182 1.328680 GTTGTCGGCATATGCACTCAG 59.671 52.381 28.07 13.58 44.36 3.35
193 194 4.607293 ATGCACTCAGACTACACAAGAA 57.393 40.909 0.00 0.00 0.00 2.52
234 236 1.105759 ATACGTGGTACTCCCTCCGC 61.106 60.000 0.00 0.00 33.32 5.54
236 238 2.363925 GTGGTACTCCCTCCGCCT 60.364 66.667 0.00 0.00 0.00 5.52
241 243 1.320507 GTACTCCCTCCGCCTAGAAG 58.679 60.000 0.00 0.00 0.00 2.85
252 254 2.159226 CCGCCTAGAAGTACTTGTCAGG 60.159 54.545 14.14 16.00 0.00 3.86
262 264 3.910627 AGTACTTGTCAGGGAAATGGAGT 59.089 43.478 0.00 0.00 0.00 3.85
311 313 9.547279 AGATACATTCATTTTTACCCCTTTCTT 57.453 29.630 0.00 0.00 0.00 2.52
313 315 7.610580 ACATTCATTTTTACCCCTTTCTTCA 57.389 32.000 0.00 0.00 0.00 3.02
325 327 5.240844 ACCCCTTTCTTCAACAAGTATTTCG 59.759 40.000 0.00 0.00 0.00 3.46
356 358 7.393515 GGAGGTACTATTTCACAAGAAAATGGT 59.606 37.037 0.00 3.63 43.24 3.55
363 365 5.913137 TTCACAAGAAAATGGTTCACACT 57.087 34.783 0.00 0.00 0.00 3.55
405 407 0.781787 TGACAAAACGATCTCGCACG 59.218 50.000 0.00 0.00 44.43 5.34
420 422 2.284150 TCGCACGCACAATCTATTAAGC 59.716 45.455 0.00 0.00 0.00 3.09
429 431 2.808543 CAATCTATTAAGCTCGTGGCCC 59.191 50.000 0.00 0.00 43.05 5.80
438 440 1.966762 CTCGTGGCCCATTTTTGCT 59.033 52.632 0.00 0.00 0.00 3.91
466 468 9.277565 CATTTTCACAATCTATTAAGTTCGTGG 57.722 33.333 0.00 0.00 0.00 4.94
468 470 4.873827 TCACAATCTATTAAGTTCGTGGCC 59.126 41.667 0.00 0.00 0.00 5.36
475 477 4.776795 ATTAAGTTCGTGGCCGATTTTT 57.223 36.364 0.00 0.00 43.80 1.94
526 528 0.032813 ATCCCTGGCAAGTTCATGGG 60.033 55.000 0.00 0.00 36.14 4.00
530 532 1.171308 CTGGCAAGTTCATGGGTCAG 58.829 55.000 0.00 0.00 0.00 3.51
572 601 3.264193 TCTTGGCTCCATGCTCTCTAAAA 59.736 43.478 0.00 0.00 42.39 1.52
581 610 5.711976 TCCATGCTCTCTAAAAGAAAAAGGG 59.288 40.000 0.00 0.00 32.23 3.95
622 651 6.024049 GCAAATGTTCTGTACTTATCTGCAC 58.976 40.000 0.00 0.00 0.00 4.57
625 654 7.602517 AATGTTCTGTACTTATCTGCACTTC 57.397 36.000 0.00 0.00 0.00 3.01
638 667 6.830873 ATCTGCACTTCTTAGAAAAAGCAT 57.169 33.333 13.31 1.56 0.00 3.79
710 740 2.456119 GCACGACGCTCCCATCAAG 61.456 63.158 0.00 0.00 37.77 3.02
723 753 5.776744 CTCCCATCAAGTCCAAAAGAAAAG 58.223 41.667 0.00 0.00 0.00 2.27
725 755 5.896678 TCCCATCAAGTCCAAAAGAAAAGAA 59.103 36.000 0.00 0.00 0.00 2.52
726 756 6.382570 TCCCATCAAGTCCAAAAGAAAAGAAA 59.617 34.615 0.00 0.00 0.00 2.52
802 834 4.457496 CGGCGTCTCAGTGGGCAT 62.457 66.667 0.00 0.00 0.00 4.40
803 835 2.821366 GGCGTCTCAGTGGGCATG 60.821 66.667 0.00 0.00 0.00 4.06
885 917 1.323534 CTGTTTGCCGCGTACAGATAC 59.676 52.381 17.57 10.10 41.33 2.24
919 951 1.130054 AGCCAGAGAGACCCAGCAAA 61.130 55.000 0.00 0.00 0.00 3.68
925 957 0.036022 AGAGACCCAGCAAACAGAGC 59.964 55.000 0.00 0.00 0.00 4.09
927 959 0.183492 AGACCCAGCAAACAGAGCAA 59.817 50.000 0.00 0.00 0.00 3.91
928 960 0.595095 GACCCAGCAAACAGAGCAAG 59.405 55.000 0.00 0.00 0.00 4.01
929 961 0.106519 ACCCAGCAAACAGAGCAAGT 60.107 50.000 0.00 0.00 0.00 3.16
930 962 0.595095 CCCAGCAAACAGAGCAAGTC 59.405 55.000 0.00 0.00 0.00 3.01
932 964 1.952296 CCAGCAAACAGAGCAAGTCTT 59.048 47.619 0.00 0.00 30.64 3.01
933 965 2.031333 CCAGCAAACAGAGCAAGTCTTC 60.031 50.000 0.00 0.00 30.64 2.87
934 966 2.031333 CAGCAAACAGAGCAAGTCTTCC 60.031 50.000 0.00 0.00 30.64 3.46
935 967 1.949525 GCAAACAGAGCAAGTCTTCCA 59.050 47.619 0.00 0.00 30.64 3.53
937 969 1.871080 AACAGAGCAAGTCTTCCACG 58.129 50.000 0.00 0.00 30.64 4.94
938 970 0.601311 ACAGAGCAAGTCTTCCACGC 60.601 55.000 0.00 0.00 30.64 5.34
939 971 1.004440 AGAGCAAGTCTTCCACGCC 60.004 57.895 0.00 0.00 27.07 5.68
940 972 2.032681 AGCAAGTCTTCCACGCCC 59.967 61.111 0.00 0.00 0.00 6.13
941 973 3.423154 GCAAGTCTTCCACGCCCG 61.423 66.667 0.00 0.00 0.00 6.13
943 975 4.699522 AAGTCTTCCACGCCCGCC 62.700 66.667 0.00 0.00 0.00 6.13
984 1016 4.122143 AGAAATCGAAGAGGCAGAGAAG 57.878 45.455 0.00 0.00 43.63 2.85
1011 1049 3.373830 AGAGACAGAGATGGGAAGAAGG 58.626 50.000 0.00 0.00 0.00 3.46
1080 1121 2.103934 CTCGCAGCTCTTCCTCCG 59.896 66.667 0.00 0.00 0.00 4.63
1137 1184 2.903855 CATGGCCATCACTCCCGC 60.904 66.667 17.61 0.00 0.00 6.13
1154 1201 1.352156 CGCGTCCAAAGCAGAGGTAC 61.352 60.000 0.00 0.00 34.19 3.34
1155 1202 1.352156 GCGTCCAAAGCAGAGGTACG 61.352 60.000 0.00 0.00 34.12 3.67
1164 1211 2.656002 AGCAGAGGTACGAGCAAGATA 58.344 47.619 0.00 0.00 0.00 1.98
1167 1214 4.100189 AGCAGAGGTACGAGCAAGATATTT 59.900 41.667 0.00 0.00 0.00 1.40
1173 1220 7.064728 AGAGGTACGAGCAAGATATTTTTGTTC 59.935 37.037 0.00 7.33 33.91 3.18
1175 1222 6.093633 GGTACGAGCAAGATATTTTTGTTCCT 59.906 38.462 10.18 4.54 33.75 3.36
1182 1229 7.890655 AGCAAGATATTTTTGTTCCTTCCTAGT 59.109 33.333 0.00 0.00 0.00 2.57
1183 1230 9.174166 GCAAGATATTTTTGTTCCTTCCTAGTA 57.826 33.333 0.00 0.00 0.00 1.82
1185 1232 9.907229 AAGATATTTTTGTTCCTTCCTAGTAGG 57.093 33.333 10.24 10.24 36.46 3.18
1186 1233 9.280456 AGATATTTTTGTTCCTTCCTAGTAGGA 57.720 33.333 15.33 15.33 44.10 2.94
1187 1234 9.549078 GATATTTTTGTTCCTTCCTAGTAGGAG 57.451 37.037 18.35 12.51 46.73 3.69
1189 1236 5.740290 TTTGTTCCTTCCTAGTAGGAGTG 57.260 43.478 18.35 14.72 46.73 3.51
1201 1252 2.688958 AGTAGGAGTGCACGGAATAGTC 59.311 50.000 12.01 0.93 0.00 2.59
1205 1256 1.476891 GAGTGCACGGAATAGTCTGGA 59.523 52.381 12.01 0.00 34.06 3.86
1207 1258 2.301870 AGTGCACGGAATAGTCTGGAAA 59.698 45.455 12.01 0.00 34.06 3.13
1208 1259 3.055094 AGTGCACGGAATAGTCTGGAAAT 60.055 43.478 12.01 0.00 34.06 2.17
1209 1260 3.063997 GTGCACGGAATAGTCTGGAAATG 59.936 47.826 0.00 0.00 34.06 2.32
1210 1261 3.055458 TGCACGGAATAGTCTGGAAATGA 60.055 43.478 3.73 0.00 34.06 2.57
1214 1284 4.080863 ACGGAATAGTCTGGAAATGAGCTT 60.081 41.667 3.73 0.00 34.06 3.74
1221 1291 3.188048 GTCTGGAAATGAGCTTGTGACTG 59.812 47.826 0.00 0.00 0.00 3.51
1243 1313 7.589993 ACTGATTGGGGATGAAATTATCTCTT 58.410 34.615 0.00 0.00 0.00 2.85
1244 1314 7.504911 ACTGATTGGGGATGAAATTATCTCTTG 59.495 37.037 0.00 0.00 0.00 3.02
1245 1315 7.585440 TGATTGGGGATGAAATTATCTCTTGA 58.415 34.615 0.00 0.00 0.00 3.02
1267 1340 3.673597 AGGGCACGGAGGAGAGGA 61.674 66.667 0.00 0.00 0.00 3.71
1278 1351 0.682855 AGGAGAGGAAGAGCAGTCGG 60.683 60.000 0.00 0.00 0.00 4.79
1626 1706 4.172512 AGAGATGCCAGCCAGCCG 62.173 66.667 0.00 0.00 0.00 5.52
1720 1801 8.597662 TCTTGTGTAAAGTGGAGTATAAACAC 57.402 34.615 0.00 0.00 37.18 3.32
1721 1802 7.383029 TCTTGTGTAAAGTGGAGTATAAACACG 59.617 37.037 0.00 0.00 38.99 4.49
1722 1803 6.514947 TGTGTAAAGTGGAGTATAAACACGT 58.485 36.000 0.00 0.00 38.99 4.49
1723 1804 7.656412 TGTGTAAAGTGGAGTATAAACACGTA 58.344 34.615 0.00 0.00 38.99 3.57
1724 1805 8.306038 TGTGTAAAGTGGAGTATAAACACGTAT 58.694 33.333 0.00 0.00 38.99 3.06
1725 1806 8.589629 GTGTAAAGTGGAGTATAAACACGTATG 58.410 37.037 0.00 0.00 39.95 2.39
1726 1807 7.760794 TGTAAAGTGGAGTATAAACACGTATGG 59.239 37.037 0.00 0.00 39.95 2.74
1727 1808 4.690122 AGTGGAGTATAAACACGTATGGC 58.310 43.478 0.00 0.00 39.95 4.40
1728 1809 4.404715 AGTGGAGTATAAACACGTATGGCT 59.595 41.667 0.00 0.00 39.95 4.75
1729 1810 5.105064 AGTGGAGTATAAACACGTATGGCTT 60.105 40.000 0.00 0.00 39.95 4.35
1730 1811 5.233689 GTGGAGTATAAACACGTATGGCTTC 59.766 44.000 0.00 0.00 0.00 3.86
1731 1812 5.128171 TGGAGTATAAACACGTATGGCTTCT 59.872 40.000 0.00 0.00 0.00 2.85
1732 1813 6.047231 GGAGTATAAACACGTATGGCTTCTT 58.953 40.000 0.00 0.00 0.00 2.52
1733 1814 6.018994 GGAGTATAAACACGTATGGCTTCTTG 60.019 42.308 0.00 0.00 0.00 3.02
1734 1815 6.403878 AGTATAAACACGTATGGCTTCTTGT 58.596 36.000 0.00 0.00 0.00 3.16
1735 1816 3.896648 AAACACGTATGGCTTCTTGTG 57.103 42.857 0.00 0.00 0.00 3.33
1736 1817 2.543777 ACACGTATGGCTTCTTGTGT 57.456 45.000 0.00 0.00 35.86 3.72
1737 1818 3.671008 ACACGTATGGCTTCTTGTGTA 57.329 42.857 0.00 0.00 38.65 2.90
1738 1819 3.997762 ACACGTATGGCTTCTTGTGTAA 58.002 40.909 0.00 0.00 38.65 2.41
1739 1820 4.382291 ACACGTATGGCTTCTTGTGTAAA 58.618 39.130 0.00 0.00 38.65 2.01
1740 1821 4.451096 ACACGTATGGCTTCTTGTGTAAAG 59.549 41.667 0.00 0.00 38.65 1.85
1741 1822 4.451096 CACGTATGGCTTCTTGTGTAAAGT 59.549 41.667 0.00 0.00 0.00 2.66
1742 1823 4.451096 ACGTATGGCTTCTTGTGTAAAGTG 59.549 41.667 0.00 0.00 0.00 3.16
1743 1824 4.142902 CGTATGGCTTCTTGTGTAAAGTGG 60.143 45.833 0.00 0.00 0.00 4.00
1744 1825 3.569194 TGGCTTCTTGTGTAAAGTGGA 57.431 42.857 0.00 0.00 0.00 4.02
1745 1826 3.476552 TGGCTTCTTGTGTAAAGTGGAG 58.523 45.455 0.00 0.00 0.00 3.86
1746 1827 3.118038 TGGCTTCTTGTGTAAAGTGGAGT 60.118 43.478 0.00 0.00 0.00 3.85
1747 1828 4.101898 TGGCTTCTTGTGTAAAGTGGAGTA 59.898 41.667 0.00 0.00 0.00 2.59
1748 1829 5.221843 TGGCTTCTTGTGTAAAGTGGAGTAT 60.222 40.000 0.00 0.00 0.00 2.12
1749 1830 6.014070 TGGCTTCTTGTGTAAAGTGGAGTATA 60.014 38.462 0.00 0.00 0.00 1.47
1760 1841 4.222124 AGTGGAGTATAAACAAGCTGGG 57.778 45.455 0.00 0.00 0.00 4.45
1797 1883 1.078285 ACTCCGAGTCTCGTCCTCC 60.078 63.158 20.37 0.00 38.40 4.30
1801 1887 2.486042 GAGTCTCGTCCTCCGCAC 59.514 66.667 0.00 0.00 36.19 5.34
1862 1949 3.852578 AGTTCATTATTGGAGGGGTGACT 59.147 43.478 0.00 0.00 0.00 3.41
1878 1965 6.012858 AGGGGTGACTGAATAACAAATACTCA 60.013 38.462 0.00 0.00 0.00 3.41
1882 1969 8.540492 GGTGACTGAATAACAAATACTCATACG 58.460 37.037 0.00 0.00 0.00 3.06
1892 1979 5.221263 ACAAATACTCATACGCTCCTACTGG 60.221 44.000 0.00 0.00 0.00 4.00
1923 2010 4.927782 GCAGCACACCACCGGTCA 62.928 66.667 2.59 0.00 31.02 4.02
1993 2080 2.001269 GGGGAGGGCAAGGAGCTAA 61.001 63.158 0.00 0.00 44.79 3.09
1994 2081 1.529309 GGGAGGGCAAGGAGCTAAG 59.471 63.158 0.00 0.00 44.79 2.18
1995 2082 1.153066 GGAGGGCAAGGAGCTAAGC 60.153 63.158 0.00 0.00 44.79 3.09
1996 2083 1.631071 GGAGGGCAAGGAGCTAAGCT 61.631 60.000 0.00 0.00 44.79 3.74
2102 2191 6.232139 ACACGTTACTTTACTTTGCATACC 57.768 37.500 0.00 0.00 0.00 2.73
2103 2192 5.759273 ACACGTTACTTTACTTTGCATACCA 59.241 36.000 0.00 0.00 0.00 3.25
2104 2193 6.073440 ACACGTTACTTTACTTTGCATACCAG 60.073 38.462 0.00 0.00 0.00 4.00
2105 2194 5.993441 ACGTTACTTTACTTTGCATACCAGT 59.007 36.000 0.00 0.00 0.00 4.00
2106 2195 6.484308 ACGTTACTTTACTTTGCATACCAGTT 59.516 34.615 0.00 0.00 0.00 3.16
2107 2196 6.795114 CGTTACTTTACTTTGCATACCAGTTG 59.205 38.462 0.00 0.00 0.00 3.16
2108 2197 7.307514 CGTTACTTTACTTTGCATACCAGTTGA 60.308 37.037 0.00 0.00 0.00 3.18
2109 2198 6.560253 ACTTTACTTTGCATACCAGTTGAG 57.440 37.500 0.00 0.00 0.00 3.02
2110 2199 5.048713 ACTTTACTTTGCATACCAGTTGAGC 60.049 40.000 0.00 0.00 0.00 4.26
2111 2200 1.806542 ACTTTGCATACCAGTTGAGCG 59.193 47.619 0.00 0.00 0.00 5.03
2112 2201 2.076100 CTTTGCATACCAGTTGAGCGA 58.924 47.619 0.00 0.00 0.00 4.93
2113 2202 1.438651 TTGCATACCAGTTGAGCGAC 58.561 50.000 0.00 0.00 0.00 5.19
2114 2203 0.320050 TGCATACCAGTTGAGCGACA 59.680 50.000 0.00 0.00 0.00 4.35
2115 2204 0.721718 GCATACCAGTTGAGCGACAC 59.278 55.000 0.00 0.00 0.00 3.67
2116 2205 0.992072 CATACCAGTTGAGCGACACG 59.008 55.000 0.00 0.00 0.00 4.49
2117 2206 0.601558 ATACCAGTTGAGCGACACGT 59.398 50.000 0.00 0.00 0.00 4.49
2118 2207 1.237533 TACCAGTTGAGCGACACGTA 58.762 50.000 0.00 0.00 0.00 3.57
2119 2208 0.318445 ACCAGTTGAGCGACACGTAC 60.318 55.000 0.00 0.00 0.00 3.67
2120 2209 0.318360 CCAGTTGAGCGACACGTACA 60.318 55.000 0.00 0.00 0.00 2.90
2121 2210 1.668919 CCAGTTGAGCGACACGTACAT 60.669 52.381 0.00 0.00 0.00 2.29
2122 2211 2.414957 CCAGTTGAGCGACACGTACATA 60.415 50.000 0.00 0.00 0.00 2.29
2123 2212 3.435566 CAGTTGAGCGACACGTACATAT 58.564 45.455 0.00 0.00 0.00 1.78
2124 2213 3.482472 CAGTTGAGCGACACGTACATATC 59.518 47.826 0.00 0.00 0.00 1.63
2156 2245 1.239347 GAAAGGGGAATATGCGCTCC 58.761 55.000 9.73 6.95 29.21 4.70
2164 2253 1.070758 GAATATGCGCTCCCAGGAAGA 59.929 52.381 9.73 0.00 0.00 2.87
2168 2257 2.009681 TGCGCTCCCAGGAAGATATA 57.990 50.000 9.73 0.00 0.00 0.86
2170 2259 1.402984 GCGCTCCCAGGAAGATATACG 60.403 57.143 0.00 0.00 0.00 3.06
2174 2263 3.118956 GCTCCCAGGAAGATATACGATGG 60.119 52.174 0.00 0.00 0.00 3.51
2175 2264 4.344978 CTCCCAGGAAGATATACGATGGA 58.655 47.826 0.00 0.00 0.00 3.41
2176 2265 4.947883 TCCCAGGAAGATATACGATGGAT 58.052 43.478 0.00 0.00 0.00 3.41
2177 2266 4.711846 TCCCAGGAAGATATACGATGGATG 59.288 45.833 0.00 0.00 0.00 3.51
2178 2267 4.437239 CCAGGAAGATATACGATGGATGC 58.563 47.826 0.00 0.00 0.00 3.91
2179 2268 4.081476 CCAGGAAGATATACGATGGATGCA 60.081 45.833 0.00 0.00 0.00 3.96
2180 2269 5.396101 CCAGGAAGATATACGATGGATGCAT 60.396 44.000 0.00 0.00 0.00 3.96
2181 2270 6.111382 CAGGAAGATATACGATGGATGCATT 58.889 40.000 0.00 0.00 0.00 3.56
2182 2271 6.596888 CAGGAAGATATACGATGGATGCATTT 59.403 38.462 0.00 0.00 0.00 2.32
2183 2272 6.596888 AGGAAGATATACGATGGATGCATTTG 59.403 38.462 0.00 0.00 0.00 2.32
2184 2273 5.808042 AGATATACGATGGATGCATTTGC 57.192 39.130 0.00 0.00 42.50 3.68
2185 2274 5.494724 AGATATACGATGGATGCATTTGCT 58.505 37.500 0.00 0.00 42.66 3.91
2186 2275 5.942236 AGATATACGATGGATGCATTTGCTT 59.058 36.000 0.00 0.00 42.66 3.91
2187 2276 2.572191 ACGATGGATGCATTTGCTTG 57.428 45.000 0.00 0.00 42.66 4.01
2188 2277 1.205657 CGATGGATGCATTTGCTTGC 58.794 50.000 0.00 3.68 42.66 4.01
2189 2278 1.202371 CGATGGATGCATTTGCTTGCT 60.202 47.619 0.00 0.00 43.18 3.91
2190 2279 2.470821 GATGGATGCATTTGCTTGCTC 58.529 47.619 0.00 3.72 43.18 4.26
2191 2280 0.171679 TGGATGCATTTGCTTGCTCG 59.828 50.000 0.00 0.00 43.18 5.03
2192 2281 1.143969 GGATGCATTTGCTTGCTCGC 61.144 55.000 0.00 0.00 43.18 5.03
2193 2282 0.457166 GATGCATTTGCTTGCTCGCA 60.457 50.000 0.00 0.00 43.18 5.10
2198 2287 2.964174 TTGCTTGCTCGCAATGGG 59.036 55.556 4.63 0.00 44.30 4.00
2199 2288 3.285523 TTGCTTGCTCGCAATGGGC 62.286 57.895 4.63 6.14 44.30 5.36
2200 2289 3.446570 GCTTGCTCGCAATGGGCT 61.447 61.111 4.63 0.00 41.67 5.19
2201 2290 2.796651 CTTGCTCGCAATGGGCTC 59.203 61.111 4.63 0.00 41.67 4.70
2202 2291 2.033911 TTGCTCGCAATGGGCTCA 59.966 55.556 0.00 0.00 41.67 4.26
2203 2292 2.262471 CTTGCTCGCAATGGGCTCAC 62.262 60.000 4.63 0.00 41.67 3.51
2204 2293 3.869272 GCTCGCAATGGGCTCACG 61.869 66.667 0.00 0.00 41.67 4.35
2205 2294 3.869272 CTCGCAATGGGCTCACGC 61.869 66.667 0.00 0.00 41.67 5.34
2206 2295 4.695993 TCGCAATGGGCTCACGCA 62.696 61.111 10.25 0.00 43.66 5.24
2207 2296 4.170062 CGCAATGGGCTCACGCAG 62.170 66.667 10.25 0.00 42.66 5.18
2208 2297 3.058160 GCAATGGGCTCACGCAGT 61.058 61.111 4.95 0.00 42.66 4.40
2209 2298 3.044059 GCAATGGGCTCACGCAGTC 62.044 63.158 4.95 0.00 42.66 3.51
2215 2304 3.755628 GCTCACGCAGTCCGGGTA 61.756 66.667 0.00 0.00 41.61 3.69
2216 2305 2.490217 CTCACGCAGTCCGGGTAG 59.510 66.667 0.00 0.00 41.61 3.18
2217 2306 3.064987 CTCACGCAGTCCGGGTAGG 62.065 68.421 0.00 0.00 41.61 3.18
2230 2319 3.477530 CCGGGTAGGAAGAAATTGATCC 58.522 50.000 0.00 0.00 45.00 3.36
2231 2320 3.131396 CGGGTAGGAAGAAATTGATCCG 58.869 50.000 0.00 0.00 38.31 4.18
2232 2321 3.431766 CGGGTAGGAAGAAATTGATCCGT 60.432 47.826 0.00 0.00 38.31 4.69
2233 2322 4.524053 GGGTAGGAAGAAATTGATCCGTT 58.476 43.478 0.00 0.00 38.31 4.44
2234 2323 4.948004 GGGTAGGAAGAAATTGATCCGTTT 59.052 41.667 0.00 0.00 38.31 3.60
2235 2324 6.117488 GGGTAGGAAGAAATTGATCCGTTTA 58.883 40.000 0.00 0.00 38.31 2.01
2236 2325 6.600427 GGGTAGGAAGAAATTGATCCGTTTAA 59.400 38.462 0.00 0.00 38.31 1.52
2237 2326 7.284716 GGGTAGGAAGAAATTGATCCGTTTAAT 59.715 37.037 0.00 0.00 38.31 1.40
2238 2327 8.683615 GGTAGGAAGAAATTGATCCGTTTAATT 58.316 33.333 0.00 0.00 38.31 1.40
2239 2328 9.503427 GTAGGAAGAAATTGATCCGTTTAATTG 57.497 33.333 0.00 0.00 38.31 2.32
2240 2329 8.348285 AGGAAGAAATTGATCCGTTTAATTGA 57.652 30.769 0.00 0.00 38.31 2.57
2241 2330 8.971073 AGGAAGAAATTGATCCGTTTAATTGAT 58.029 29.630 0.00 0.00 38.31 2.57
2242 2331 9.586435 GGAAGAAATTGATCCGTTTAATTGATT 57.414 29.630 0.00 0.00 0.00 2.57
2245 2334 9.793252 AGAAATTGATCCGTTTAATTGATTGAG 57.207 29.630 0.00 0.00 0.00 3.02
2246 2335 9.573133 GAAATTGATCCGTTTAATTGATTGAGT 57.427 29.630 0.00 0.00 0.00 3.41
2247 2336 9.573133 AAATTGATCCGTTTAATTGATTGAGTC 57.427 29.630 0.00 0.00 0.00 3.36
2248 2337 6.344572 TGATCCGTTTAATTGATTGAGTCG 57.655 37.500 0.00 0.00 0.00 4.18
2249 2338 4.593597 TCCGTTTAATTGATTGAGTCGC 57.406 40.909 0.00 0.00 0.00 5.19
2250 2339 3.997681 TCCGTTTAATTGATTGAGTCGCA 59.002 39.130 0.00 0.00 0.00 5.10
2251 2340 4.634004 TCCGTTTAATTGATTGAGTCGCAT 59.366 37.500 0.00 0.00 0.00 4.73
2252 2341 4.963953 CCGTTTAATTGATTGAGTCGCATC 59.036 41.667 0.00 0.00 0.00 3.91
2253 2342 4.963953 CGTTTAATTGATTGAGTCGCATCC 59.036 41.667 0.00 0.00 0.00 3.51
2254 2343 5.447144 CGTTTAATTGATTGAGTCGCATCCA 60.447 40.000 0.00 0.00 0.00 3.41
2255 2344 6.321717 GTTTAATTGATTGAGTCGCATCCAA 58.678 36.000 0.00 0.00 0.00 3.53
2256 2345 4.627611 AATTGATTGAGTCGCATCCAAG 57.372 40.909 0.80 0.00 0.00 3.61
2257 2346 3.333029 TTGATTGAGTCGCATCCAAGA 57.667 42.857 0.80 0.00 0.00 3.02
2258 2347 2.897436 TGATTGAGTCGCATCCAAGAG 58.103 47.619 0.80 0.00 0.00 2.85
2259 2348 1.596727 GATTGAGTCGCATCCAAGAGC 59.403 52.381 0.00 0.00 0.00 4.09
2260 2349 0.610174 TTGAGTCGCATCCAAGAGCT 59.390 50.000 0.00 0.00 0.00 4.09
2261 2350 0.108472 TGAGTCGCATCCAAGAGCTG 60.108 55.000 0.00 0.00 0.00 4.24
2263 2352 2.124983 TCGCATCCAAGAGCTGGC 60.125 61.111 0.00 0.00 45.98 4.85
2264 2353 2.124819 CGCATCCAAGAGCTGGCT 60.125 61.111 0.00 0.00 45.98 4.75
2265 2354 1.748122 CGCATCCAAGAGCTGGCTT 60.748 57.895 0.00 0.00 45.98 4.35
2266 2355 1.807886 GCATCCAAGAGCTGGCTTG 59.192 57.895 7.95 7.95 45.98 4.01
2267 2356 0.679002 GCATCCAAGAGCTGGCTTGA 60.679 55.000 14.98 4.01 46.31 3.02
2268 2357 1.093159 CATCCAAGAGCTGGCTTGAC 58.907 55.000 14.98 0.00 46.31 3.18
2269 2358 0.392193 ATCCAAGAGCTGGCTTGACG 60.392 55.000 14.98 1.96 46.31 4.35
2270 2359 1.004560 CCAAGAGCTGGCTTGACGA 60.005 57.895 14.98 0.00 46.31 4.20
2271 2360 0.603707 CCAAGAGCTGGCTTGACGAA 60.604 55.000 14.98 0.00 46.31 3.85
2272 2361 0.514691 CAAGAGCTGGCTTGACGAAC 59.485 55.000 9.07 0.00 46.31 3.95
2273 2362 0.603975 AAGAGCTGGCTTGACGAACC 60.604 55.000 0.00 0.00 0.00 3.62
2274 2363 1.004440 GAGCTGGCTTGACGAACCT 60.004 57.895 0.00 0.00 0.00 3.50
2275 2364 0.603975 GAGCTGGCTTGACGAACCTT 60.604 55.000 0.00 0.00 0.00 3.50
2276 2365 0.685097 AGCTGGCTTGACGAACCTTA 59.315 50.000 0.00 0.00 0.00 2.69
2277 2366 1.071699 AGCTGGCTTGACGAACCTTAA 59.928 47.619 0.00 0.00 0.00 1.85
2278 2367 1.877443 GCTGGCTTGACGAACCTTAAA 59.123 47.619 0.00 0.00 0.00 1.52
2279 2368 2.292292 GCTGGCTTGACGAACCTTAAAA 59.708 45.455 0.00 0.00 0.00 1.52
2280 2369 3.852205 GCTGGCTTGACGAACCTTAAAAC 60.852 47.826 0.00 0.00 0.00 2.43
2281 2370 3.280295 TGGCTTGACGAACCTTAAAACA 58.720 40.909 0.00 0.00 0.00 2.83
2282 2371 3.886505 TGGCTTGACGAACCTTAAAACAT 59.113 39.130 0.00 0.00 0.00 2.71
2283 2372 4.023536 TGGCTTGACGAACCTTAAAACATC 60.024 41.667 0.00 0.00 0.00 3.06
2284 2373 4.215613 GGCTTGACGAACCTTAAAACATCT 59.784 41.667 0.00 0.00 0.00 2.90
2285 2374 5.278315 GGCTTGACGAACCTTAAAACATCTT 60.278 40.000 0.00 0.00 0.00 2.40
2286 2375 6.206498 GCTTGACGAACCTTAAAACATCTTT 58.794 36.000 0.00 0.00 0.00 2.52
2287 2376 6.142320 GCTTGACGAACCTTAAAACATCTTTG 59.858 38.462 0.00 0.00 0.00 2.77
2288 2377 6.067263 TGACGAACCTTAAAACATCTTTGG 57.933 37.500 0.00 0.00 0.00 3.28
2289 2378 5.009210 TGACGAACCTTAAAACATCTTTGGG 59.991 40.000 0.00 0.00 0.00 4.12
2290 2379 4.891168 ACGAACCTTAAAACATCTTTGGGT 59.109 37.500 0.00 0.00 0.00 4.51
2291 2380 5.009310 ACGAACCTTAAAACATCTTTGGGTC 59.991 40.000 0.00 0.00 0.00 4.46
2292 2381 5.240844 CGAACCTTAAAACATCTTTGGGTCT 59.759 40.000 0.00 0.00 0.00 3.85
2293 2382 6.405278 AACCTTAAAACATCTTTGGGTCTG 57.595 37.500 0.00 0.00 0.00 3.51
2294 2383 4.832823 ACCTTAAAACATCTTTGGGTCTGG 59.167 41.667 0.00 0.00 0.00 3.86
2295 2384 5.076873 CCTTAAAACATCTTTGGGTCTGGA 58.923 41.667 0.00 0.00 0.00 3.86
2296 2385 5.538433 CCTTAAAACATCTTTGGGTCTGGAA 59.462 40.000 0.00 0.00 0.00 3.53
2297 2386 6.294731 CCTTAAAACATCTTTGGGTCTGGAAG 60.295 42.308 0.00 0.00 0.00 3.46
2298 2387 2.887151 ACATCTTTGGGTCTGGAAGG 57.113 50.000 0.00 0.00 0.00 3.46
2299 2388 1.355720 ACATCTTTGGGTCTGGAAGGG 59.644 52.381 0.00 0.00 0.00 3.95
2300 2389 1.002857 ATCTTTGGGTCTGGAAGGGG 58.997 55.000 0.00 0.00 0.00 4.79
2301 2390 0.104144 TCTTTGGGTCTGGAAGGGGA 60.104 55.000 0.00 0.00 0.00 4.81
2302 2391 0.777446 CTTTGGGTCTGGAAGGGGAA 59.223 55.000 0.00 0.00 0.00 3.97
2303 2392 1.359130 CTTTGGGTCTGGAAGGGGAAT 59.641 52.381 0.00 0.00 0.00 3.01
2304 2393 0.999712 TTGGGTCTGGAAGGGGAATC 59.000 55.000 0.00 0.00 0.00 2.52
2305 2394 1.271840 TGGGTCTGGAAGGGGAATCG 61.272 60.000 0.00 0.00 0.00 3.34
2306 2395 1.527370 GGTCTGGAAGGGGAATCGG 59.473 63.158 0.00 0.00 0.00 4.18
2307 2396 1.153147 GTCTGGAAGGGGAATCGGC 60.153 63.158 0.00 0.00 0.00 5.54
2308 2397 2.193248 CTGGAAGGGGAATCGGCC 59.807 66.667 0.00 0.00 0.00 6.13
2309 2398 3.757248 CTGGAAGGGGAATCGGCCG 62.757 68.421 22.12 22.12 0.00 6.13
2310 2399 3.793888 GGAAGGGGAATCGGCCGT 61.794 66.667 27.15 6.47 0.00 5.68
2311 2400 2.513897 GAAGGGGAATCGGCCGTG 60.514 66.667 27.15 0.00 0.00 4.94
2312 2401 3.325201 GAAGGGGAATCGGCCGTGT 62.325 63.158 27.15 14.57 0.00 4.49
2313 2402 2.814913 GAAGGGGAATCGGCCGTGTT 62.815 60.000 27.15 20.92 0.00 3.32
2314 2403 2.360726 GGGGAATCGGCCGTGTTT 60.361 61.111 27.15 17.24 0.00 2.83
2315 2404 2.696759 GGGGAATCGGCCGTGTTTG 61.697 63.158 27.15 0.00 0.00 2.93
2316 2405 2.178273 GGAATCGGCCGTGTTTGC 59.822 61.111 27.15 18.08 0.00 3.68
2317 2406 2.622011 GGAATCGGCCGTGTTTGCA 61.622 57.895 27.15 3.40 0.00 4.08
2318 2407 1.442017 GAATCGGCCGTGTTTGCAC 60.442 57.895 27.15 5.93 41.97 4.57
2319 2408 2.123988 GAATCGGCCGTGTTTGCACA 62.124 55.000 27.15 1.58 45.50 4.57
2320 2409 2.128853 AATCGGCCGTGTTTGCACAG 62.129 55.000 27.15 0.00 45.50 3.66
2321 2410 3.582120 CGGCCGTGTTTGCACAGT 61.582 61.111 19.50 0.00 45.50 3.55
2322 2411 2.331451 GGCCGTGTTTGCACAGTC 59.669 61.111 0.00 0.00 45.50 3.51
2323 2412 2.477176 GGCCGTGTTTGCACAGTCA 61.477 57.895 0.00 0.00 45.50 3.41
2324 2413 1.009675 GCCGTGTTTGCACAGTCAG 60.010 57.895 0.00 0.00 45.50 3.51
2325 2414 1.009675 CCGTGTTTGCACAGTCAGC 60.010 57.895 0.00 0.00 45.50 4.26
2326 2415 1.009675 CGTGTTTGCACAGTCAGCC 60.010 57.895 0.00 0.00 45.50 4.85
2327 2416 1.360192 GTGTTTGCACAGTCAGCCC 59.640 57.895 0.00 0.00 44.64 5.19
2328 2417 2.186160 TGTTTGCACAGTCAGCCCG 61.186 57.895 0.00 0.00 0.00 6.13
2329 2418 1.891919 GTTTGCACAGTCAGCCCGA 60.892 57.895 0.00 0.00 0.00 5.14
2330 2419 1.597854 TTTGCACAGTCAGCCCGAG 60.598 57.895 0.00 0.00 0.00 4.63
2331 2420 4.687215 TGCACAGTCAGCCCGAGC 62.687 66.667 0.00 0.00 40.32 5.03
2333 2422 4.056125 CACAGTCAGCCCGAGCGA 62.056 66.667 0.00 0.00 46.67 4.93
2334 2423 3.071206 ACAGTCAGCCCGAGCGAT 61.071 61.111 0.00 0.00 46.67 4.58
2335 2424 2.584418 CAGTCAGCCCGAGCGATG 60.584 66.667 0.00 0.00 46.67 3.84
2336 2425 4.521062 AGTCAGCCCGAGCGATGC 62.521 66.667 0.00 0.00 46.67 3.91
2337 2426 4.819761 GTCAGCCCGAGCGATGCA 62.820 66.667 0.00 0.00 46.67 3.96
2338 2427 4.081185 TCAGCCCGAGCGATGCAA 62.081 61.111 0.00 0.00 46.67 4.08
2339 2428 3.869272 CAGCCCGAGCGATGCAAC 61.869 66.667 0.00 0.00 46.67 4.17
2342 2431 2.499205 CCCGAGCGATGCAACCTA 59.501 61.111 0.00 0.00 0.00 3.08
2343 2432 1.592669 CCCGAGCGATGCAACCTAG 60.593 63.158 0.00 0.00 0.00 3.02
2344 2433 1.592669 CCGAGCGATGCAACCTAGG 60.593 63.158 7.41 7.41 0.00 3.02
2345 2434 1.592669 CGAGCGATGCAACCTAGGG 60.593 63.158 14.81 0.00 0.00 3.53
2346 2435 1.889573 GAGCGATGCAACCTAGGGC 60.890 63.158 14.81 8.48 0.00 5.19
2347 2436 2.124736 GCGATGCAACCTAGGGCA 60.125 61.111 14.81 14.46 45.23 5.36
2348 2437 2.472909 GCGATGCAACCTAGGGCAC 61.473 63.158 14.81 7.87 43.75 5.01
2349 2438 2.173669 CGATGCAACCTAGGGCACG 61.174 63.158 14.81 14.95 43.75 5.34
2350 2439 1.078426 GATGCAACCTAGGGCACGT 60.078 57.895 14.81 2.48 43.75 4.49
2351 2440 1.369091 GATGCAACCTAGGGCACGTG 61.369 60.000 14.81 12.28 43.75 4.49
2352 2441 2.746277 GCAACCTAGGGCACGTGG 60.746 66.667 18.88 1.07 0.00 4.94
2356 2445 3.319198 CCTAGGGCACGTGGGTGT 61.319 66.667 18.88 0.00 46.13 4.16
2357 2446 2.047274 CTAGGGCACGTGGGTGTG 60.047 66.667 18.88 0.00 46.13 3.82
2358 2447 3.605749 CTAGGGCACGTGGGTGTGG 62.606 68.421 18.88 0.00 46.13 4.17
2363 2452 4.562425 CACGTGGGTGTGGGCAGT 62.562 66.667 7.95 0.00 39.38 4.40
2364 2453 3.804329 ACGTGGGTGTGGGCAGTT 61.804 61.111 0.00 0.00 0.00 3.16
2365 2454 2.428187 CGTGGGTGTGGGCAGTTA 59.572 61.111 0.00 0.00 0.00 2.24
2366 2455 1.964373 CGTGGGTGTGGGCAGTTAC 60.964 63.158 0.00 0.00 0.00 2.50
2367 2456 1.149627 GTGGGTGTGGGCAGTTACA 59.850 57.895 0.00 0.00 0.00 2.41
2368 2457 1.149627 TGGGTGTGGGCAGTTACAC 59.850 57.895 0.00 0.00 44.84 2.90
2369 2458 1.149627 GGGTGTGGGCAGTTACACA 59.850 57.895 9.38 0.00 46.79 3.72
2371 2460 4.889807 TGTGGGCAGTTACACACC 57.110 55.556 0.00 0.00 42.20 4.16
2372 2461 2.226764 TGTGGGCAGTTACACACCT 58.773 52.632 0.00 0.00 42.20 4.00
2373 2462 1.425694 TGTGGGCAGTTACACACCTA 58.574 50.000 0.00 0.00 42.20 3.08
2374 2463 1.346395 TGTGGGCAGTTACACACCTAG 59.654 52.381 0.00 0.00 42.20 3.02
2375 2464 1.621814 GTGGGCAGTTACACACCTAGA 59.378 52.381 0.00 0.00 37.54 2.43
2376 2465 1.899814 TGGGCAGTTACACACCTAGAG 59.100 52.381 0.00 0.00 0.00 2.43
2377 2466 1.207329 GGGCAGTTACACACCTAGAGG 59.793 57.143 0.00 0.00 42.17 3.69
2378 2467 1.405661 GGCAGTTACACACCTAGAGGC 60.406 57.143 0.00 0.00 39.32 4.70
2379 2468 1.736032 GCAGTTACACACCTAGAGGCG 60.736 57.143 0.00 0.00 39.32 5.52
2380 2469 1.816835 CAGTTACACACCTAGAGGCGA 59.183 52.381 0.00 0.00 39.32 5.54
2381 2470 1.817447 AGTTACACACCTAGAGGCGAC 59.183 52.381 0.00 0.00 39.32 5.19
2382 2471 1.135170 GTTACACACCTAGAGGCGACC 60.135 57.143 0.00 0.00 39.32 4.79
2383 2472 0.330604 TACACACCTAGAGGCGACCT 59.669 55.000 0.00 0.00 39.32 3.85
2396 2485 4.719369 GACCTCGAGGCGTTGCGT 62.719 66.667 31.56 10.06 39.32 5.24
2397 2486 4.719369 ACCTCGAGGCGTTGCGTC 62.719 66.667 31.56 1.61 39.64 5.19
2402 2491 2.170273 GAGGCGTTGCGTCGTTTC 59.830 61.111 0.00 0.00 36.23 2.78
2403 2492 2.279918 AGGCGTTGCGTCGTTTCT 60.280 55.556 0.00 0.00 36.23 2.52
2404 2493 2.127758 GGCGTTGCGTCGTTTCTG 60.128 61.111 0.00 0.00 0.00 3.02
2405 2494 2.127758 GCGTTGCGTCGTTTCTGG 60.128 61.111 0.00 0.00 0.00 3.86
2406 2495 2.591311 GCGTTGCGTCGTTTCTGGA 61.591 57.895 0.00 0.00 0.00 3.86
2407 2496 1.928653 CGTTGCGTCGTTTCTGGAA 59.071 52.632 0.00 0.00 0.00 3.53
2408 2497 0.111266 CGTTGCGTCGTTTCTGGAAG 60.111 55.000 0.00 0.00 0.00 3.46
2409 2498 0.384353 GTTGCGTCGTTTCTGGAAGC 60.384 55.000 0.00 0.00 39.00 3.86
2410 2499 1.503818 TTGCGTCGTTTCTGGAAGCC 61.504 55.000 0.00 0.00 37.98 4.35
2411 2500 3.011760 GCGTCGTTTCTGGAAGCCG 62.012 63.158 0.00 0.00 33.61 5.52
2412 2501 2.861006 GTCGTTTCTGGAAGCCGC 59.139 61.111 0.00 0.00 0.00 6.53
2413 2502 2.736995 TCGTTTCTGGAAGCCGCG 60.737 61.111 0.00 0.00 0.00 6.46
2414 2503 2.736995 CGTTTCTGGAAGCCGCGA 60.737 61.111 8.23 0.00 0.00 5.87
2415 2504 2.861006 GTTTCTGGAAGCCGCGAC 59.139 61.111 8.23 0.00 0.00 5.19
2416 2505 1.959226 GTTTCTGGAAGCCGCGACA 60.959 57.895 8.23 0.00 0.00 4.35
2417 2506 1.003839 TTTCTGGAAGCCGCGACAT 60.004 52.632 8.23 0.00 0.00 3.06
2418 2507 0.248012 TTTCTGGAAGCCGCGACATA 59.752 50.000 8.23 0.00 0.00 2.29
2419 2508 0.248012 TTCTGGAAGCCGCGACATAA 59.752 50.000 8.23 0.00 0.00 1.90
2420 2509 0.248012 TCTGGAAGCCGCGACATAAA 59.752 50.000 8.23 0.00 0.00 1.40
2421 2510 1.134521 TCTGGAAGCCGCGACATAAAT 60.135 47.619 8.23 0.00 0.00 1.40
2422 2511 1.670811 CTGGAAGCCGCGACATAAATT 59.329 47.619 8.23 0.00 0.00 1.82
2423 2512 2.869801 CTGGAAGCCGCGACATAAATTA 59.130 45.455 8.23 0.00 0.00 1.40
2424 2513 2.610374 TGGAAGCCGCGACATAAATTAC 59.390 45.455 8.23 0.00 0.00 1.89
2425 2514 2.032290 GGAAGCCGCGACATAAATTACC 60.032 50.000 8.23 0.00 0.00 2.85
2426 2515 1.589803 AGCCGCGACATAAATTACCC 58.410 50.000 8.23 0.00 0.00 3.69
2427 2516 1.140252 AGCCGCGACATAAATTACCCT 59.860 47.619 8.23 0.00 0.00 4.34
2428 2517 1.529865 GCCGCGACATAAATTACCCTC 59.470 52.381 8.23 0.00 0.00 4.30
2429 2518 2.828877 CCGCGACATAAATTACCCTCA 58.171 47.619 8.23 0.00 0.00 3.86
2430 2519 2.542595 CCGCGACATAAATTACCCTCAC 59.457 50.000 8.23 0.00 0.00 3.51
2431 2520 2.542595 CGCGACATAAATTACCCTCACC 59.457 50.000 0.00 0.00 0.00 4.02
2432 2521 2.542595 GCGACATAAATTACCCTCACCG 59.457 50.000 0.00 0.00 0.00 4.94
2433 2522 2.542595 CGACATAAATTACCCTCACCGC 59.457 50.000 0.00 0.00 0.00 5.68
2434 2523 3.740141 CGACATAAATTACCCTCACCGCT 60.740 47.826 0.00 0.00 0.00 5.52
2435 2524 4.196971 GACATAAATTACCCTCACCGCTT 58.803 43.478 0.00 0.00 0.00 4.68
2436 2525 4.595986 ACATAAATTACCCTCACCGCTTT 58.404 39.130 0.00 0.00 0.00 3.51
2437 2526 4.638865 ACATAAATTACCCTCACCGCTTTC 59.361 41.667 0.00 0.00 0.00 2.62
2438 2527 3.434940 AAATTACCCTCACCGCTTTCT 57.565 42.857 0.00 0.00 0.00 2.52
2439 2528 2.693267 ATTACCCTCACCGCTTTCTC 57.307 50.000 0.00 0.00 0.00 2.87
2440 2529 1.640917 TTACCCTCACCGCTTTCTCT 58.359 50.000 0.00 0.00 0.00 3.10
2441 2530 1.183549 TACCCTCACCGCTTTCTCTC 58.816 55.000 0.00 0.00 0.00 3.20
2442 2531 1.219393 CCCTCACCGCTTTCTCTCC 59.781 63.158 0.00 0.00 0.00 3.71
2443 2532 1.219393 CCTCACCGCTTTCTCTCCC 59.781 63.158 0.00 0.00 0.00 4.30
2444 2533 1.261238 CCTCACCGCTTTCTCTCCCT 61.261 60.000 0.00 0.00 0.00 4.20
2445 2534 0.610687 CTCACCGCTTTCTCTCCCTT 59.389 55.000 0.00 0.00 0.00 3.95
2446 2535 0.608640 TCACCGCTTTCTCTCCCTTC 59.391 55.000 0.00 0.00 0.00 3.46
2447 2536 0.610687 CACCGCTTTCTCTCCCTTCT 59.389 55.000 0.00 0.00 0.00 2.85
2448 2537 1.002544 CACCGCTTTCTCTCCCTTCTT 59.997 52.381 0.00 0.00 0.00 2.52
2449 2538 1.276705 ACCGCTTTCTCTCCCTTCTTC 59.723 52.381 0.00 0.00 0.00 2.87
2450 2539 1.406205 CCGCTTTCTCTCCCTTCTTCC 60.406 57.143 0.00 0.00 0.00 3.46
2451 2540 1.406205 CGCTTTCTCTCCCTTCTTCCC 60.406 57.143 0.00 0.00 0.00 3.97
2452 2541 1.630878 GCTTTCTCTCCCTTCTTCCCA 59.369 52.381 0.00 0.00 0.00 4.37
2453 2542 2.616765 GCTTTCTCTCCCTTCTTCCCAC 60.617 54.545 0.00 0.00 0.00 4.61
2454 2543 2.723530 TTCTCTCCCTTCTTCCCACT 57.276 50.000 0.00 0.00 0.00 4.00
2455 2544 2.239681 TCTCTCCCTTCTTCCCACTC 57.760 55.000 0.00 0.00 0.00 3.51
2456 2545 1.719378 TCTCTCCCTTCTTCCCACTCT 59.281 52.381 0.00 0.00 0.00 3.24
2457 2546 2.107366 CTCTCCCTTCTTCCCACTCTC 58.893 57.143 0.00 0.00 0.00 3.20
2458 2547 1.433199 TCTCCCTTCTTCCCACTCTCA 59.567 52.381 0.00 0.00 0.00 3.27
2459 2548 1.552792 CTCCCTTCTTCCCACTCTCAC 59.447 57.143 0.00 0.00 0.00 3.51
2460 2549 1.132849 TCCCTTCTTCCCACTCTCACA 60.133 52.381 0.00 0.00 0.00 3.58
2461 2550 1.912043 CCCTTCTTCCCACTCTCACAT 59.088 52.381 0.00 0.00 0.00 3.21
2462 2551 2.093235 CCCTTCTTCCCACTCTCACATC 60.093 54.545 0.00 0.00 0.00 3.06
2463 2552 2.417924 CCTTCTTCCCACTCTCACATCG 60.418 54.545 0.00 0.00 0.00 3.84
2464 2553 0.532573 TCTTCCCACTCTCACATCGC 59.467 55.000 0.00 0.00 0.00 4.58
2465 2554 0.460987 CTTCCCACTCTCACATCGCC 60.461 60.000 0.00 0.00 0.00 5.54
2466 2555 2.202797 CCCACTCTCACATCGCCG 60.203 66.667 0.00 0.00 0.00 6.46
2467 2556 2.202797 CCACTCTCACATCGCCGG 60.203 66.667 0.00 0.00 0.00 6.13
2468 2557 2.887568 CACTCTCACATCGCCGGC 60.888 66.667 19.07 19.07 0.00 6.13
2469 2558 3.381983 ACTCTCACATCGCCGGCA 61.382 61.111 28.98 14.46 0.00 5.69
2470 2559 2.584418 CTCTCACATCGCCGGCAG 60.584 66.667 28.98 19.33 0.00 4.85
2471 2560 4.819761 TCTCACATCGCCGGCAGC 62.820 66.667 28.98 0.00 38.52 5.25
2496 2585 3.528594 CGGATCGACGGACTACAAG 57.471 57.895 0.00 0.00 0.00 3.16
2497 2586 0.029035 CGGATCGACGGACTACAAGG 59.971 60.000 0.00 0.00 0.00 3.61
2498 2587 0.248949 GGATCGACGGACTACAAGGC 60.249 60.000 0.00 0.00 0.00 4.35
2499 2588 0.454600 GATCGACGGACTACAAGGCA 59.545 55.000 0.00 0.00 0.00 4.75
2500 2589 0.892755 ATCGACGGACTACAAGGCAA 59.107 50.000 0.00 0.00 0.00 4.52
2501 2590 0.892755 TCGACGGACTACAAGGCAAT 59.107 50.000 0.00 0.00 0.00 3.56
2502 2591 1.135199 TCGACGGACTACAAGGCAATC 60.135 52.381 0.00 0.00 0.00 2.67
2503 2592 1.653151 GACGGACTACAAGGCAATCC 58.347 55.000 0.00 0.00 0.00 3.01
2505 2594 2.429610 GACGGACTACAAGGCAATCCTA 59.570 50.000 0.00 0.00 43.40 2.94
2506 2595 2.431057 ACGGACTACAAGGCAATCCTAG 59.569 50.000 0.00 0.00 43.40 3.02
2507 2596 2.224066 CGGACTACAAGGCAATCCTAGG 60.224 54.545 0.82 0.82 43.40 3.02
2508 2597 2.772515 GGACTACAAGGCAATCCTAGGT 59.227 50.000 9.08 0.00 43.40 3.08
2509 2598 3.432326 GGACTACAAGGCAATCCTAGGTG 60.432 52.174 9.08 1.32 43.40 4.00
2510 2599 2.092914 ACTACAAGGCAATCCTAGGTGC 60.093 50.000 14.57 14.57 43.40 5.01
2514 2603 2.902343 GCAATCCTAGGTGCCGGC 60.902 66.667 22.73 22.73 34.58 6.13
2515 2604 2.588877 CAATCCTAGGTGCCGGCG 60.589 66.667 23.90 6.63 0.00 6.46
2516 2605 2.762459 AATCCTAGGTGCCGGCGA 60.762 61.111 23.90 12.30 0.00 5.54
2517 2606 2.797278 AATCCTAGGTGCCGGCGAG 61.797 63.158 23.90 15.70 0.00 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 0.108615 GCAGTACATGACGGTGCTCT 60.109 55.000 0.00 0.00 30.95 4.09
75 76 0.652071 GCGATGTTGATGACGATGCA 59.348 50.000 0.00 0.00 0.00 3.96
78 79 1.665679 GTTGGCGATGTTGATGACGAT 59.334 47.619 0.00 0.00 0.00 3.73
107 108 4.832823 TCTAGATCCTCAACATCCGCATTA 59.167 41.667 0.00 0.00 0.00 1.90
166 167 2.223805 TGTAGTCTGAGTGCATATGCCG 60.224 50.000 24.54 8.22 41.18 5.69
168 169 3.785486 TGTGTAGTCTGAGTGCATATGC 58.215 45.455 21.09 21.09 42.50 3.14
181 182 9.567848 TTCTTTCAATTGTTTTCTTGTGTAGTC 57.432 29.630 5.13 0.00 0.00 2.59
213 215 2.575532 CGGAGGGAGTACCACGTATAA 58.424 52.381 0.00 0.00 43.89 0.98
218 220 2.898920 TAGGCGGAGGGAGTACCACG 62.899 65.000 4.26 4.26 43.89 4.94
234 236 5.740290 TTTCCCTGACAAGTACTTCTAGG 57.260 43.478 16.89 16.89 0.00 3.02
236 238 5.783360 TCCATTTCCCTGACAAGTACTTCTA 59.217 40.000 4.77 0.00 0.00 2.10
241 243 4.287766 ACTCCATTTCCCTGACAAGTAC 57.712 45.455 0.00 0.00 0.00 2.73
252 254 9.543783 AAAATACGTCTAGATAACTCCATTTCC 57.456 33.333 0.00 0.00 0.00 3.13
280 282 9.492730 AGGGGTAAAAATGAATGTATCTTGAAT 57.507 29.630 0.00 0.00 0.00 2.57
293 295 7.125053 ACTTGTTGAAGAAAGGGGTAAAAATGA 59.875 33.333 0.00 0.00 32.98 2.57
303 305 5.472137 TCCGAAATACTTGTTGAAGAAAGGG 59.528 40.000 0.00 0.00 32.98 3.95
305 307 6.573725 CGTTCCGAAATACTTGTTGAAGAAAG 59.426 38.462 0.00 0.00 32.98 2.62
311 313 3.991773 CTCCGTTCCGAAATACTTGTTGA 59.008 43.478 0.00 0.00 0.00 3.18
313 315 3.244318 ACCTCCGTTCCGAAATACTTGTT 60.244 43.478 0.00 0.00 0.00 2.83
325 327 4.460948 TGTGAAATAGTACCTCCGTTCC 57.539 45.455 0.00 0.00 0.00 3.62
335 337 9.126151 TGTGAACCATTTTCTTGTGAAATAGTA 57.874 29.630 0.00 0.00 41.24 1.82
337 339 8.137437 AGTGTGAACCATTTTCTTGTGAAATAG 58.863 33.333 0.00 0.00 41.24 1.73
382 384 2.805671 TGCGAGATCGTTTTGTCACAAT 59.194 40.909 3.94 0.00 42.22 2.71
405 407 3.303395 GCCACGAGCTTAATAGATTGTGC 60.303 47.826 5.48 0.00 46.33 4.57
420 422 1.135402 GTAGCAAAAATGGGCCACGAG 60.135 52.381 9.28 0.00 0.00 4.18
466 468 2.159430 GGAAAATGTGGCAAAAATCGGC 59.841 45.455 0.00 0.00 0.00 5.54
468 470 3.397482 TGGGAAAATGTGGCAAAAATCG 58.603 40.909 0.00 0.00 0.00 3.34
475 477 3.881688 CACAAATTTGGGAAAATGTGGCA 59.118 39.130 21.74 0.00 38.01 4.92
530 532 1.376609 CTCCATGTAAAGCCCACCGC 61.377 60.000 0.00 0.00 37.98 5.68
572 601 7.606839 CCGTTTAGTAGAGATTTCCCTTTTTCT 59.393 37.037 0.00 0.00 0.00 2.52
581 610 7.073342 ACATTTGCCGTTTAGTAGAGATTTC 57.927 36.000 0.00 0.00 0.00 2.17
638 667 1.531365 CCTTTTGCAGGGCAGTCCA 60.531 57.895 0.00 0.00 40.61 4.02
665 695 5.822519 GTGATAGGATTGCAGGTTTATCACA 59.177 40.000 23.85 8.17 43.16 3.58
813 845 0.868406 CCGGACAGTGAGAAGCAAAC 59.132 55.000 0.00 0.00 0.00 2.93
919 951 0.601311 GCGTGGAAGACTTGCTCTGT 60.601 55.000 8.27 0.00 0.00 3.41
925 957 3.423154 GCGGGCGTGGAAGACTTG 61.423 66.667 0.00 0.00 0.00 3.16
934 966 3.726517 CAAGAACTGGCGGGCGTG 61.727 66.667 0.00 0.00 0.00 5.34
937 969 3.273080 CTTGCAAGAACTGGCGGGC 62.273 63.158 22.31 0.00 0.00 6.13
938 970 1.580845 CTCTTGCAAGAACTGGCGGG 61.581 60.000 28.16 11.60 34.03 6.13
939 971 0.603707 TCTCTTGCAAGAACTGGCGG 60.604 55.000 28.16 15.57 34.03 6.13
940 972 0.795085 CTCTCTTGCAAGAACTGGCG 59.205 55.000 28.16 16.25 34.03 5.69
941 973 1.163554 CCTCTCTTGCAAGAACTGGC 58.836 55.000 28.16 0.00 34.03 4.85
943 975 4.384056 TCTTTCCTCTCTTGCAAGAACTG 58.616 43.478 28.16 17.63 34.03 3.16
984 1016 1.682854 CCCATCTCTGTCTCTCTCTGC 59.317 57.143 0.00 0.00 0.00 4.26
1034 1072 0.036388 GAGGACGCCAAAGATCACCA 60.036 55.000 0.00 0.00 0.00 4.17
1035 1073 1.084370 CGAGGACGCCAAAGATCACC 61.084 60.000 0.00 0.00 0.00 4.02
1036 1074 2.373938 CGAGGACGCCAAAGATCAC 58.626 57.895 0.00 0.00 0.00 3.06
1137 1184 0.242825 TCGTACCTCTGCTTTGGACG 59.757 55.000 0.00 0.00 0.00 4.79
1154 1201 6.030228 GGAAGGAACAAAAATATCTTGCTCG 58.970 40.000 0.00 0.00 0.00 5.03
1155 1202 7.163001 AGGAAGGAACAAAAATATCTTGCTC 57.837 36.000 0.00 0.00 29.26 4.26
1164 1211 7.168905 CACTCCTACTAGGAAGGAACAAAAAT 58.831 38.462 14.92 0.00 45.28 1.82
1167 1214 4.020485 GCACTCCTACTAGGAAGGAACAAA 60.020 45.833 14.92 0.00 45.28 2.83
1173 1220 1.405821 CGTGCACTCCTACTAGGAAGG 59.594 57.143 16.19 7.00 45.28 3.46
1175 1222 1.005097 TCCGTGCACTCCTACTAGGAA 59.995 52.381 16.19 0.00 45.28 3.36
1182 1229 2.688446 CAGACTATTCCGTGCACTCCTA 59.312 50.000 16.19 0.51 0.00 2.94
1183 1230 1.478510 CAGACTATTCCGTGCACTCCT 59.521 52.381 16.19 0.00 0.00 3.69
1184 1231 1.471676 CCAGACTATTCCGTGCACTCC 60.472 57.143 16.19 0.00 0.00 3.85
1185 1232 1.476891 TCCAGACTATTCCGTGCACTC 59.523 52.381 16.19 3.44 0.00 3.51
1186 1233 1.557099 TCCAGACTATTCCGTGCACT 58.443 50.000 16.19 0.00 0.00 4.40
1187 1234 2.380084 TTCCAGACTATTCCGTGCAC 57.620 50.000 6.82 6.82 0.00 4.57
1189 1236 3.531538 TCATTTCCAGACTATTCCGTGC 58.468 45.455 0.00 0.00 0.00 5.34
1201 1252 3.405831 TCAGTCACAAGCTCATTTCCAG 58.594 45.455 0.00 0.00 0.00 3.86
1205 1256 3.508793 CCCAATCAGTCACAAGCTCATTT 59.491 43.478 0.00 0.00 0.00 2.32
1207 1258 2.619849 CCCCAATCAGTCACAAGCTCAT 60.620 50.000 0.00 0.00 0.00 2.90
1208 1259 1.271543 CCCCAATCAGTCACAAGCTCA 60.272 52.381 0.00 0.00 0.00 4.26
1209 1260 1.003580 TCCCCAATCAGTCACAAGCTC 59.996 52.381 0.00 0.00 0.00 4.09
1210 1261 1.067295 TCCCCAATCAGTCACAAGCT 58.933 50.000 0.00 0.00 0.00 3.74
1214 1284 3.805066 TTTCATCCCCAATCAGTCACA 57.195 42.857 0.00 0.00 0.00 3.58
1221 1291 8.647256 ATCAAGAGATAATTTCATCCCCAATC 57.353 34.615 0.00 0.00 31.14 2.67
1243 1313 2.046023 CTCCGTGCCCTGCAATCA 60.046 61.111 0.00 0.00 41.47 2.57
1244 1314 2.825836 CCTCCGTGCCCTGCAATC 60.826 66.667 0.00 0.00 41.47 2.67
1245 1315 3.329889 TCCTCCGTGCCCTGCAAT 61.330 61.111 0.00 0.00 41.47 3.56
1267 1340 4.749310 CAGCCGCCGACTGCTCTT 62.749 66.667 0.00 0.00 33.60 2.85
1720 1801 4.142902 CCACTTTACACAAGAAGCCATACG 60.143 45.833 0.00 0.00 0.00 3.06
1721 1802 5.001232 TCCACTTTACACAAGAAGCCATAC 58.999 41.667 0.00 0.00 0.00 2.39
1722 1803 5.221843 ACTCCACTTTACACAAGAAGCCATA 60.222 40.000 0.00 0.00 0.00 2.74
1723 1804 4.074970 CTCCACTTTACACAAGAAGCCAT 58.925 43.478 0.00 0.00 0.00 4.40
1724 1805 3.118038 ACTCCACTTTACACAAGAAGCCA 60.118 43.478 0.00 0.00 0.00 4.75
1725 1806 3.477530 ACTCCACTTTACACAAGAAGCC 58.522 45.455 0.00 0.00 0.00 4.35
1726 1807 7.900782 TTATACTCCACTTTACACAAGAAGC 57.099 36.000 0.00 0.00 0.00 3.86
1727 1808 9.268268 TGTTTATACTCCACTTTACACAAGAAG 57.732 33.333 0.00 0.00 0.00 2.85
1728 1809 9.616156 TTGTTTATACTCCACTTTACACAAGAA 57.384 29.630 0.00 0.00 0.00 2.52
1729 1810 9.268268 CTTGTTTATACTCCACTTTACACAAGA 57.732 33.333 0.00 0.00 39.73 3.02
1730 1811 8.015658 GCTTGTTTATACTCCACTTTACACAAG 58.984 37.037 0.00 0.00 40.12 3.16
1731 1812 7.717875 AGCTTGTTTATACTCCACTTTACACAA 59.282 33.333 0.00 0.00 0.00 3.33
1732 1813 7.172532 CAGCTTGTTTATACTCCACTTTACACA 59.827 37.037 0.00 0.00 0.00 3.72
1733 1814 7.360946 CCAGCTTGTTTATACTCCACTTTACAC 60.361 40.741 0.00 0.00 0.00 2.90
1734 1815 6.653320 CCAGCTTGTTTATACTCCACTTTACA 59.347 38.462 0.00 0.00 0.00 2.41
1735 1816 6.093633 CCCAGCTTGTTTATACTCCACTTTAC 59.906 42.308 0.00 0.00 0.00 2.01
1736 1817 6.177610 CCCAGCTTGTTTATACTCCACTTTA 58.822 40.000 0.00 0.00 0.00 1.85
1737 1818 5.010282 CCCAGCTTGTTTATACTCCACTTT 58.990 41.667 0.00 0.00 0.00 2.66
1738 1819 4.589908 CCCAGCTTGTTTATACTCCACTT 58.410 43.478 0.00 0.00 0.00 3.16
1739 1820 3.622455 GCCCAGCTTGTTTATACTCCACT 60.622 47.826 0.00 0.00 0.00 4.00
1740 1821 2.683362 GCCCAGCTTGTTTATACTCCAC 59.317 50.000 0.00 0.00 0.00 4.02
1741 1822 2.576191 AGCCCAGCTTGTTTATACTCCA 59.424 45.455 0.00 0.00 33.89 3.86
1742 1823 3.283259 AGCCCAGCTTGTTTATACTCC 57.717 47.619 0.00 0.00 33.89 3.85
1760 1841 0.383949 TCGCTCAAACAAACCCAAGC 59.616 50.000 0.00 0.00 0.00 4.01
1797 1883 2.854777 CTCGAGAGATAAACAAGGTGCG 59.145 50.000 6.58 0.00 40.84 5.34
1801 1887 5.124776 ACTCTGTCTCGAGAGATAAACAAGG 59.875 44.000 17.22 7.52 41.95 3.61
1862 1949 7.497595 AGGAGCGTATGAGTATTTGTTATTCA 58.502 34.615 0.00 0.00 31.87 2.57
1878 1965 1.409427 GCAAGACCAGTAGGAGCGTAT 59.591 52.381 0.00 0.00 38.69 3.06
1882 1969 1.484240 AGATGCAAGACCAGTAGGAGC 59.516 52.381 0.00 0.00 38.69 4.70
1892 1979 1.293963 TGCTGCGTCAGATGCAAGAC 61.294 55.000 18.12 11.04 39.98 3.01
1983 2070 2.559440 GTCCATCAGCTTAGCTCCTTG 58.441 52.381 2.68 2.16 36.40 3.61
1993 2080 2.045926 GCCCAACGTCCATCAGCT 60.046 61.111 0.00 0.00 0.00 4.24
1994 2081 2.359850 TGCCCAACGTCCATCAGC 60.360 61.111 0.00 0.00 0.00 4.26
1995 2082 3.578456 GTGCCCAACGTCCATCAG 58.422 61.111 0.00 0.00 0.00 2.90
2023 2111 4.637534 TCACTAGATTTTCCATGCTCTTGC 59.362 41.667 0.00 0.00 40.20 4.01
2100 2189 0.318445 GTACGTGTCGCTCAACTGGT 60.318 55.000 0.00 0.00 0.00 4.00
2101 2190 0.318360 TGTACGTGTCGCTCAACTGG 60.318 55.000 0.00 0.00 0.00 4.00
2102 2191 1.698165 ATGTACGTGTCGCTCAACTG 58.302 50.000 0.00 0.00 0.00 3.16
2103 2192 3.377485 AGATATGTACGTGTCGCTCAACT 59.623 43.478 0.00 0.00 0.00 3.16
2104 2193 3.692576 AGATATGTACGTGTCGCTCAAC 58.307 45.455 0.00 0.00 0.00 3.18
2105 2194 3.375922 TGAGATATGTACGTGTCGCTCAA 59.624 43.478 14.73 0.00 0.00 3.02
2106 2195 2.940410 TGAGATATGTACGTGTCGCTCA 59.060 45.455 14.73 8.00 0.00 4.26
2107 2196 3.289911 GTGAGATATGTACGTGTCGCTC 58.710 50.000 14.73 8.87 0.00 5.03
2108 2197 2.286242 CGTGAGATATGTACGTGTCGCT 60.286 50.000 14.73 0.00 33.48 4.93
2109 2198 2.034789 CGTGAGATATGTACGTGTCGC 58.965 52.381 8.33 8.33 33.48 5.19
2110 2199 3.278303 GTCGTGAGATATGTACGTGTCG 58.722 50.000 0.00 0.00 45.19 4.35
2111 2200 3.278303 CGTCGTGAGATATGTACGTGTC 58.722 50.000 0.00 3.75 45.19 3.67
2112 2201 2.538333 GCGTCGTGAGATATGTACGTGT 60.538 50.000 0.00 0.00 45.19 4.49
2113 2202 2.034789 GCGTCGTGAGATATGTACGTG 58.965 52.381 0.00 0.00 45.19 4.49
2114 2203 1.003116 GGCGTCGTGAGATATGTACGT 60.003 52.381 0.00 0.00 45.19 3.57
2115 2204 1.671469 GGCGTCGTGAGATATGTACG 58.329 55.000 0.00 0.00 45.19 3.67
2116 2205 1.662309 CCGGCGTCGTGAGATATGTAC 60.662 57.143 9.28 0.00 45.19 2.90
2117 2206 0.589708 CCGGCGTCGTGAGATATGTA 59.410 55.000 9.28 0.00 45.19 2.29
2118 2207 1.359117 CCGGCGTCGTGAGATATGT 59.641 57.895 9.28 0.00 45.19 2.29
2119 2208 1.371758 CCCGGCGTCGTGAGATATG 60.372 63.158 9.28 0.00 45.19 1.78
2120 2209 1.105167 TTCCCGGCGTCGTGAGATAT 61.105 55.000 9.28 0.00 45.19 1.63
2121 2210 1.314534 TTTCCCGGCGTCGTGAGATA 61.315 55.000 9.28 0.00 45.19 1.98
2122 2211 2.558554 CTTTCCCGGCGTCGTGAGAT 62.559 60.000 9.28 0.00 45.19 2.75
2123 2212 3.277211 CTTTCCCGGCGTCGTGAGA 62.277 63.158 9.28 0.00 38.16 3.27
2124 2213 2.809601 CTTTCCCGGCGTCGTGAG 60.810 66.667 9.28 0.00 33.95 3.51
2156 2245 4.081476 TGCATCCATCGTATATCTTCCTGG 60.081 45.833 0.00 0.00 0.00 4.45
2164 2253 5.620654 GCAAGCAAATGCATCCATCGTATAT 60.621 40.000 8.28 0.00 45.70 0.86
2168 2257 1.470285 GCAAGCAAATGCATCCATCGT 60.470 47.619 8.28 0.00 45.70 3.73
2182 2271 3.751246 GCCCATTGCGAGCAAGCA 61.751 61.111 15.90 1.83 46.54 3.91
2199 2288 2.490217 CTACCCGGACTGCGTGAG 59.510 66.667 0.73 0.00 0.00 3.51
2200 2289 3.066190 CCTACCCGGACTGCGTGA 61.066 66.667 0.73 0.00 33.16 4.35
2201 2290 2.558554 CTTCCTACCCGGACTGCGTG 62.559 65.000 0.73 0.00 42.97 5.34
2202 2291 2.283388 TTCCTACCCGGACTGCGT 60.283 61.111 0.73 0.00 42.97 5.24
2203 2292 1.601419 TTCTTCCTACCCGGACTGCG 61.601 60.000 0.73 0.00 42.97 5.18
2204 2293 0.611714 TTTCTTCCTACCCGGACTGC 59.388 55.000 0.73 0.00 42.97 4.40
2205 2294 3.055385 TCAATTTCTTCCTACCCGGACTG 60.055 47.826 0.73 0.00 42.97 3.51
2206 2295 3.178865 TCAATTTCTTCCTACCCGGACT 58.821 45.455 0.73 0.00 42.97 3.85
2207 2296 3.622166 TCAATTTCTTCCTACCCGGAC 57.378 47.619 0.73 0.00 42.97 4.79
2208 2297 3.135895 GGATCAATTTCTTCCTACCCGGA 59.864 47.826 0.73 0.00 41.06 5.14
2209 2298 3.477530 GGATCAATTTCTTCCTACCCGG 58.522 50.000 0.00 0.00 0.00 5.73
2210 2299 3.131396 CGGATCAATTTCTTCCTACCCG 58.869 50.000 0.00 0.00 0.00 5.28
2211 2300 4.152284 ACGGATCAATTTCTTCCTACCC 57.848 45.455 0.00 0.00 0.00 3.69
2212 2301 7.619964 TTAAACGGATCAATTTCTTCCTACC 57.380 36.000 0.00 0.00 0.00 3.18
2213 2302 9.503427 CAATTAAACGGATCAATTTCTTCCTAC 57.497 33.333 0.00 0.00 0.00 3.18
2214 2303 9.456147 TCAATTAAACGGATCAATTTCTTCCTA 57.544 29.630 0.00 0.00 0.00 2.94
2215 2304 8.348285 TCAATTAAACGGATCAATTTCTTCCT 57.652 30.769 0.00 0.00 0.00 3.36
2216 2305 9.586435 AATCAATTAAACGGATCAATTTCTTCC 57.414 29.630 0.00 0.00 0.00 3.46
2219 2308 9.793252 CTCAATCAATTAAACGGATCAATTTCT 57.207 29.630 0.00 0.00 0.00 2.52
2220 2309 9.573133 ACTCAATCAATTAAACGGATCAATTTC 57.427 29.630 0.00 0.00 0.00 2.17
2221 2310 9.573133 GACTCAATCAATTAAACGGATCAATTT 57.427 29.630 0.00 0.00 0.00 1.82
2222 2311 7.910162 CGACTCAATCAATTAAACGGATCAATT 59.090 33.333 0.00 0.00 0.00 2.32
2223 2312 7.409697 CGACTCAATCAATTAAACGGATCAAT 58.590 34.615 0.00 0.00 0.00 2.57
2224 2313 6.674519 GCGACTCAATCAATTAAACGGATCAA 60.675 38.462 0.00 0.00 0.00 2.57
2225 2314 5.220586 GCGACTCAATCAATTAAACGGATCA 60.221 40.000 0.00 0.00 0.00 2.92
2226 2315 5.198274 GCGACTCAATCAATTAAACGGATC 58.802 41.667 0.00 0.00 0.00 3.36
2227 2316 4.634004 TGCGACTCAATCAATTAAACGGAT 59.366 37.500 0.00 0.00 0.00 4.18
2228 2317 3.997681 TGCGACTCAATCAATTAAACGGA 59.002 39.130 0.00 0.00 0.00 4.69
2229 2318 4.335082 TGCGACTCAATCAATTAAACGG 57.665 40.909 0.00 0.00 0.00 4.44
2230 2319 4.963953 GGATGCGACTCAATCAATTAAACG 59.036 41.667 0.00 0.00 0.00 3.60
2231 2320 5.879237 TGGATGCGACTCAATCAATTAAAC 58.121 37.500 0.00 0.00 0.00 2.01
2232 2321 6.374053 TCTTGGATGCGACTCAATCAATTAAA 59.626 34.615 0.00 0.00 0.00 1.52
2233 2322 5.879777 TCTTGGATGCGACTCAATCAATTAA 59.120 36.000 0.00 0.00 0.00 1.40
2234 2323 5.427378 TCTTGGATGCGACTCAATCAATTA 58.573 37.500 0.00 0.00 0.00 1.40
2235 2324 4.264253 TCTTGGATGCGACTCAATCAATT 58.736 39.130 0.00 0.00 0.00 2.32
2236 2325 3.875727 CTCTTGGATGCGACTCAATCAAT 59.124 43.478 0.00 0.00 0.00 2.57
2237 2326 3.264947 CTCTTGGATGCGACTCAATCAA 58.735 45.455 0.00 0.00 0.00 2.57
2238 2327 2.897436 CTCTTGGATGCGACTCAATCA 58.103 47.619 0.00 0.00 0.00 2.57
2239 2328 1.596727 GCTCTTGGATGCGACTCAATC 59.403 52.381 0.00 0.00 0.00 2.67
2240 2329 1.209019 AGCTCTTGGATGCGACTCAAT 59.791 47.619 0.00 0.00 0.00 2.57
2241 2330 0.610174 AGCTCTTGGATGCGACTCAA 59.390 50.000 0.00 0.00 0.00 3.02
2242 2331 0.108472 CAGCTCTTGGATGCGACTCA 60.108 55.000 0.00 0.00 0.00 3.41
2243 2332 2.675519 CAGCTCTTGGATGCGACTC 58.324 57.895 0.00 0.00 0.00 3.36
2244 2333 4.928398 CAGCTCTTGGATGCGACT 57.072 55.556 0.00 0.00 0.00 4.18
2253 2342 0.514691 GTTCGTCAAGCCAGCTCTTG 59.485 55.000 8.52 8.52 43.53 3.02
2254 2343 0.603975 GGTTCGTCAAGCCAGCTCTT 60.604 55.000 0.00 0.00 0.00 2.85
2255 2344 1.004440 GGTTCGTCAAGCCAGCTCT 60.004 57.895 0.00 0.00 0.00 4.09
2256 2345 0.603975 AAGGTTCGTCAAGCCAGCTC 60.604 55.000 0.00 0.00 0.00 4.09
2257 2346 0.685097 TAAGGTTCGTCAAGCCAGCT 59.315 50.000 0.00 0.00 0.00 4.24
2258 2347 1.519408 TTAAGGTTCGTCAAGCCAGC 58.481 50.000 0.00 0.00 0.00 4.85
2259 2348 3.314080 TGTTTTAAGGTTCGTCAAGCCAG 59.686 43.478 0.00 0.00 0.00 4.85
2260 2349 3.280295 TGTTTTAAGGTTCGTCAAGCCA 58.720 40.909 0.00 0.00 0.00 4.75
2261 2350 3.974871 TGTTTTAAGGTTCGTCAAGCC 57.025 42.857 0.00 0.00 0.00 4.35
2262 2351 5.358298 AGATGTTTTAAGGTTCGTCAAGC 57.642 39.130 0.00 0.00 0.00 4.01
2263 2352 6.636850 CCAAAGATGTTTTAAGGTTCGTCAAG 59.363 38.462 0.00 0.00 0.00 3.02
2264 2353 6.460399 CCCAAAGATGTTTTAAGGTTCGTCAA 60.460 38.462 0.00 0.00 0.00 3.18
2265 2354 5.009210 CCCAAAGATGTTTTAAGGTTCGTCA 59.991 40.000 0.00 0.00 0.00 4.35
2266 2355 5.009310 ACCCAAAGATGTTTTAAGGTTCGTC 59.991 40.000 0.00 0.00 0.00 4.20
2267 2356 4.891168 ACCCAAAGATGTTTTAAGGTTCGT 59.109 37.500 0.00 0.00 0.00 3.85
2268 2357 5.240844 AGACCCAAAGATGTTTTAAGGTTCG 59.759 40.000 3.73 0.00 0.00 3.95
2269 2358 6.447162 CAGACCCAAAGATGTTTTAAGGTTC 58.553 40.000 3.73 0.00 0.00 3.62
2270 2359 5.304357 CCAGACCCAAAGATGTTTTAAGGTT 59.696 40.000 3.73 0.00 0.00 3.50
2271 2360 4.832823 CCAGACCCAAAGATGTTTTAAGGT 59.167 41.667 2.13 2.13 0.00 3.50
2272 2361 5.076873 TCCAGACCCAAAGATGTTTTAAGG 58.923 41.667 0.00 0.00 0.00 2.69
2273 2362 6.294731 CCTTCCAGACCCAAAGATGTTTTAAG 60.295 42.308 0.00 0.00 0.00 1.85
2274 2363 5.538433 CCTTCCAGACCCAAAGATGTTTTAA 59.462 40.000 0.00 0.00 0.00 1.52
2275 2364 5.076873 CCTTCCAGACCCAAAGATGTTTTA 58.923 41.667 0.00 0.00 0.00 1.52
2276 2365 3.897505 CCTTCCAGACCCAAAGATGTTTT 59.102 43.478 0.00 0.00 0.00 2.43
2277 2366 3.500343 CCTTCCAGACCCAAAGATGTTT 58.500 45.455 0.00 0.00 0.00 2.83
2278 2367 2.225117 CCCTTCCAGACCCAAAGATGTT 60.225 50.000 0.00 0.00 0.00 2.71
2279 2368 1.355720 CCCTTCCAGACCCAAAGATGT 59.644 52.381 0.00 0.00 0.00 3.06
2280 2369 1.341383 CCCCTTCCAGACCCAAAGATG 60.341 57.143 0.00 0.00 0.00 2.90
2281 2370 1.002857 CCCCTTCCAGACCCAAAGAT 58.997 55.000 0.00 0.00 0.00 2.40
2282 2371 0.104144 TCCCCTTCCAGACCCAAAGA 60.104 55.000 0.00 0.00 0.00 2.52
2283 2372 0.777446 TTCCCCTTCCAGACCCAAAG 59.223 55.000 0.00 0.00 0.00 2.77
2284 2373 1.357761 GATTCCCCTTCCAGACCCAAA 59.642 52.381 0.00 0.00 0.00 3.28
2285 2374 0.999712 GATTCCCCTTCCAGACCCAA 59.000 55.000 0.00 0.00 0.00 4.12
2286 2375 1.271840 CGATTCCCCTTCCAGACCCA 61.272 60.000 0.00 0.00 0.00 4.51
2287 2376 1.527370 CGATTCCCCTTCCAGACCC 59.473 63.158 0.00 0.00 0.00 4.46
2288 2377 1.527370 CCGATTCCCCTTCCAGACC 59.473 63.158 0.00 0.00 0.00 3.85
2289 2378 1.153147 GCCGATTCCCCTTCCAGAC 60.153 63.158 0.00 0.00 0.00 3.51
2290 2379 2.375345 GGCCGATTCCCCTTCCAGA 61.375 63.158 0.00 0.00 0.00 3.86
2291 2380 2.193248 GGCCGATTCCCCTTCCAG 59.807 66.667 0.00 0.00 0.00 3.86
2292 2381 3.792736 CGGCCGATTCCCCTTCCA 61.793 66.667 24.07 0.00 0.00 3.53
2293 2382 3.793888 ACGGCCGATTCCCCTTCC 61.794 66.667 35.90 0.00 0.00 3.46
2294 2383 2.513897 CACGGCCGATTCCCCTTC 60.514 66.667 35.90 0.00 0.00 3.46
2295 2384 2.420466 AAACACGGCCGATTCCCCTT 62.420 55.000 35.90 11.61 0.00 3.95
2296 2385 2.902457 AAACACGGCCGATTCCCCT 61.902 57.895 35.90 3.57 0.00 4.79
2297 2386 2.360726 AAACACGGCCGATTCCCC 60.361 61.111 35.90 0.00 0.00 4.81
2298 2387 2.874751 CAAACACGGCCGATTCCC 59.125 61.111 35.90 0.00 0.00 3.97
2299 2388 2.178273 GCAAACACGGCCGATTCC 59.822 61.111 35.90 15.48 0.00 3.01
2300 2389 1.442017 GTGCAAACACGGCCGATTC 60.442 57.895 35.90 14.51 36.98 2.52
2301 2390 2.642700 GTGCAAACACGGCCGATT 59.357 55.556 35.90 22.67 36.98 3.34
2310 2399 2.186160 CGGGCTGACTGTGCAAACA 61.186 57.895 0.00 0.00 0.00 2.83
2311 2400 1.845809 CTCGGGCTGACTGTGCAAAC 61.846 60.000 0.00 0.00 0.00 2.93
2312 2401 1.597854 CTCGGGCTGACTGTGCAAA 60.598 57.895 0.00 0.00 0.00 3.68
2313 2402 2.031012 CTCGGGCTGACTGTGCAA 59.969 61.111 0.00 0.00 0.00 4.08
2314 2403 4.687215 GCTCGGGCTGACTGTGCA 62.687 66.667 11.33 0.00 42.92 4.57
2316 2405 3.362399 ATCGCTCGGGCTGACTGTG 62.362 63.158 5.36 0.00 36.09 3.66
2317 2406 3.071206 ATCGCTCGGGCTGACTGT 61.071 61.111 5.36 0.00 36.09 3.55
2318 2407 2.584418 CATCGCTCGGGCTGACTG 60.584 66.667 5.36 1.99 36.09 3.51
2319 2408 4.521062 GCATCGCTCGGGCTGACT 62.521 66.667 5.36 0.00 36.09 3.41
2320 2409 4.819761 TGCATCGCTCGGGCTGAC 62.820 66.667 5.36 0.00 36.09 3.51
2321 2410 4.081185 TTGCATCGCTCGGGCTGA 62.081 61.111 5.36 4.77 36.09 4.26
2322 2411 3.869272 GTTGCATCGCTCGGGCTG 61.869 66.667 5.36 0.00 36.09 4.85
2324 2413 3.733344 TAGGTTGCATCGCTCGGGC 62.733 63.158 0.00 0.00 0.00 6.13
2325 2414 1.592669 CTAGGTTGCATCGCTCGGG 60.593 63.158 0.00 0.00 0.00 5.14
2326 2415 1.592669 CCTAGGTTGCATCGCTCGG 60.593 63.158 0.00 0.00 0.00 4.63
2327 2416 1.592669 CCCTAGGTTGCATCGCTCG 60.593 63.158 8.29 0.00 0.00 5.03
2328 2417 1.889573 GCCCTAGGTTGCATCGCTC 60.890 63.158 8.29 0.00 0.00 5.03
2329 2418 2.190578 GCCCTAGGTTGCATCGCT 59.809 61.111 8.29 0.00 0.00 4.93
2330 2419 2.124736 TGCCCTAGGTTGCATCGC 60.125 61.111 8.29 2.31 31.31 4.58
2331 2420 2.173669 CGTGCCCTAGGTTGCATCG 61.174 63.158 14.80 14.93 40.07 3.84
2332 2421 1.078426 ACGTGCCCTAGGTTGCATC 60.078 57.895 14.80 8.59 40.07 3.91
2333 2422 1.377202 CACGTGCCCTAGGTTGCAT 60.377 57.895 14.80 0.00 40.07 3.96
2334 2423 2.031919 CACGTGCCCTAGGTTGCA 59.968 61.111 8.29 8.40 34.54 4.08
2335 2424 2.746277 CCACGTGCCCTAGGTTGC 60.746 66.667 10.91 5.49 0.00 4.17
2336 2425 2.046314 CCCACGTGCCCTAGGTTG 60.046 66.667 10.91 0.00 0.00 3.77
2337 2426 2.528378 ACCCACGTGCCCTAGGTT 60.528 61.111 10.91 0.00 0.00 3.50
2338 2427 3.319198 CACCCACGTGCCCTAGGT 61.319 66.667 10.91 8.95 32.04 3.08
2339 2428 3.319198 ACACCCACGTGCCCTAGG 61.319 66.667 10.91 8.22 44.40 3.02
2340 2429 2.047274 CACACCCACGTGCCCTAG 60.047 66.667 10.91 0.00 44.40 3.02
2341 2430 3.632080 CCACACCCACGTGCCCTA 61.632 66.667 10.91 0.00 44.40 3.53
2346 2435 2.668185 TAACTGCCCACACCCACGTG 62.668 60.000 9.08 9.08 46.11 4.49
2347 2436 2.445119 TAACTGCCCACACCCACGT 61.445 57.895 0.00 0.00 0.00 4.49
2348 2437 1.964373 GTAACTGCCCACACCCACG 60.964 63.158 0.00 0.00 0.00 4.94
2349 2438 1.149627 TGTAACTGCCCACACCCAC 59.850 57.895 0.00 0.00 0.00 4.61
2350 2439 1.149627 GTGTAACTGCCCACACCCA 59.850 57.895 0.00 0.00 39.30 4.51
2351 2440 1.149627 TGTGTAACTGCCCACACCC 59.850 57.895 2.69 0.00 43.54 4.61
2352 2441 4.889807 TGTGTAACTGCCCACACC 57.110 55.556 2.69 0.00 43.54 4.16
2354 2443 1.346395 CTAGGTGTGTAACTGCCCACA 59.654 52.381 0.00 0.00 39.16 4.17
2355 2444 1.621814 TCTAGGTGTGTAACTGCCCAC 59.378 52.381 0.00 0.00 38.04 4.61
2356 2445 1.899814 CTCTAGGTGTGTAACTGCCCA 59.100 52.381 0.00 0.00 38.04 5.36
2357 2446 1.207329 CCTCTAGGTGTGTAACTGCCC 59.793 57.143 0.00 0.00 38.04 5.36
2358 2447 1.405661 GCCTCTAGGTGTGTAACTGCC 60.406 57.143 0.00 0.00 37.57 4.85
2359 2448 1.736032 CGCCTCTAGGTGTGTAACTGC 60.736 57.143 1.20 0.00 40.69 4.40
2360 2449 1.816835 TCGCCTCTAGGTGTGTAACTG 59.183 52.381 9.32 0.00 45.57 3.16
2361 2450 1.817447 GTCGCCTCTAGGTGTGTAACT 59.183 52.381 9.32 0.00 45.57 2.24
2362 2451 1.135170 GGTCGCCTCTAGGTGTGTAAC 60.135 57.143 9.32 0.69 45.57 2.50
2363 2452 1.180029 GGTCGCCTCTAGGTGTGTAA 58.820 55.000 9.32 0.00 45.57 2.41
2364 2453 0.330604 AGGTCGCCTCTAGGTGTGTA 59.669 55.000 9.32 0.00 45.57 2.90
2365 2454 0.966370 GAGGTCGCCTCTAGGTGTGT 60.966 60.000 15.90 0.00 46.41 3.72
2366 2455 1.810532 GAGGTCGCCTCTAGGTGTG 59.189 63.158 15.90 0.00 46.41 3.82
2367 2456 4.340620 GAGGTCGCCTCTAGGTGT 57.659 61.111 15.90 0.00 46.41 4.16
2379 2468 4.719369 ACGCAACGCCTCGAGGTC 62.719 66.667 31.43 21.93 37.57 3.85
2380 2469 4.719369 GACGCAACGCCTCGAGGT 62.719 66.667 31.43 11.30 37.57 3.85
2383 2472 4.634133 AACGACGCAACGCCTCGA 62.634 61.111 13.00 0.00 38.83 4.04
2384 2473 3.609422 GAAACGACGCAACGCCTCG 62.609 63.158 5.94 5.94 41.33 4.63
2385 2474 2.170273 GAAACGACGCAACGCCTC 59.830 61.111 0.00 0.00 36.70 4.70
2386 2475 2.279918 AGAAACGACGCAACGCCT 60.280 55.556 0.00 0.00 36.70 5.52
2387 2476 2.127758 CAGAAACGACGCAACGCC 60.128 61.111 0.00 0.00 36.70 5.68
2388 2477 2.096481 TTCCAGAAACGACGCAACGC 62.096 55.000 0.00 0.00 36.70 4.84
2389 2478 0.111266 CTTCCAGAAACGACGCAACG 60.111 55.000 0.00 0.00 39.31 4.10
2390 2479 0.384353 GCTTCCAGAAACGACGCAAC 60.384 55.000 0.00 0.00 0.00 4.17
2391 2480 1.503818 GGCTTCCAGAAACGACGCAA 61.504 55.000 0.00 0.00 0.00 4.85
2392 2481 1.959226 GGCTTCCAGAAACGACGCA 60.959 57.895 0.00 0.00 0.00 5.24
2393 2482 2.861006 GGCTTCCAGAAACGACGC 59.139 61.111 0.00 0.00 0.00 5.19
2394 2483 3.011760 GCGGCTTCCAGAAACGACG 62.012 63.158 7.95 0.00 0.00 5.12
2395 2484 2.861006 GCGGCTTCCAGAAACGAC 59.139 61.111 7.95 0.00 0.00 4.34
2396 2485 2.736995 CGCGGCTTCCAGAAACGA 60.737 61.111 0.00 0.00 0.00 3.85
2397 2486 2.736995 TCGCGGCTTCCAGAAACG 60.737 61.111 6.13 1.17 0.00 3.60
2398 2487 1.298859 ATGTCGCGGCTTCCAGAAAC 61.299 55.000 13.81 0.00 0.00 2.78
2399 2488 0.248012 TATGTCGCGGCTTCCAGAAA 59.752 50.000 13.81 0.00 0.00 2.52
2400 2489 0.248012 TTATGTCGCGGCTTCCAGAA 59.752 50.000 13.81 0.00 0.00 3.02
2401 2490 0.248012 TTTATGTCGCGGCTTCCAGA 59.752 50.000 13.81 0.00 0.00 3.86
2402 2491 1.299541 ATTTATGTCGCGGCTTCCAG 58.700 50.000 13.81 0.00 0.00 3.86
2403 2492 1.745232 AATTTATGTCGCGGCTTCCA 58.255 45.000 13.81 0.00 0.00 3.53
2404 2493 2.032290 GGTAATTTATGTCGCGGCTTCC 60.032 50.000 13.81 0.00 0.00 3.46
2405 2494 2.032290 GGGTAATTTATGTCGCGGCTTC 60.032 50.000 13.81 0.00 0.00 3.86
2406 2495 1.944709 GGGTAATTTATGTCGCGGCTT 59.055 47.619 13.81 8.64 0.00 4.35
2407 2496 1.140252 AGGGTAATTTATGTCGCGGCT 59.860 47.619 13.81 0.00 0.00 5.52
2408 2497 1.529865 GAGGGTAATTTATGTCGCGGC 59.470 52.381 2.29 2.29 0.00 6.53
2409 2498 2.542595 GTGAGGGTAATTTATGTCGCGG 59.457 50.000 6.13 0.00 0.00 6.46
2410 2499 2.542595 GGTGAGGGTAATTTATGTCGCG 59.457 50.000 0.00 0.00 0.00 5.87
2411 2500 2.542595 CGGTGAGGGTAATTTATGTCGC 59.457 50.000 0.00 0.00 0.00 5.19
2412 2501 2.542595 GCGGTGAGGGTAATTTATGTCG 59.457 50.000 0.00 0.00 0.00 4.35
2413 2502 3.805207 AGCGGTGAGGGTAATTTATGTC 58.195 45.455 0.00 0.00 0.00 3.06
2414 2503 3.926058 AGCGGTGAGGGTAATTTATGT 57.074 42.857 0.00 0.00 0.00 2.29
2415 2504 4.881850 AGAAAGCGGTGAGGGTAATTTATG 59.118 41.667 0.00 0.00 0.00 1.90
2416 2505 5.104485 AGAGAAAGCGGTGAGGGTAATTTAT 60.104 40.000 0.00 0.00 0.00 1.40
2417 2506 4.224370 AGAGAAAGCGGTGAGGGTAATTTA 59.776 41.667 0.00 0.00 0.00 1.40
2418 2507 3.009143 AGAGAAAGCGGTGAGGGTAATTT 59.991 43.478 0.00 0.00 0.00 1.82
2419 2508 2.572104 AGAGAAAGCGGTGAGGGTAATT 59.428 45.455 0.00 0.00 0.00 1.40
2420 2509 2.168728 GAGAGAAAGCGGTGAGGGTAAT 59.831 50.000 0.00 0.00 0.00 1.89
2421 2510 1.549170 GAGAGAAAGCGGTGAGGGTAA 59.451 52.381 0.00 0.00 0.00 2.85
2422 2511 1.183549 GAGAGAAAGCGGTGAGGGTA 58.816 55.000 0.00 0.00 0.00 3.69
2423 2512 1.545706 GGAGAGAAAGCGGTGAGGGT 61.546 60.000 0.00 0.00 0.00 4.34
2424 2513 1.219393 GGAGAGAAAGCGGTGAGGG 59.781 63.158 0.00 0.00 0.00 4.30
2425 2514 1.219393 GGGAGAGAAAGCGGTGAGG 59.781 63.158 0.00 0.00 0.00 3.86
2426 2515 0.610687 AAGGGAGAGAAAGCGGTGAG 59.389 55.000 0.00 0.00 0.00 3.51
2427 2516 0.608640 GAAGGGAGAGAAAGCGGTGA 59.391 55.000 0.00 0.00 0.00 4.02
2428 2517 0.610687 AGAAGGGAGAGAAAGCGGTG 59.389 55.000 0.00 0.00 0.00 4.94
2429 2518 1.276705 GAAGAAGGGAGAGAAAGCGGT 59.723 52.381 0.00 0.00 0.00 5.68
2430 2519 1.406205 GGAAGAAGGGAGAGAAAGCGG 60.406 57.143 0.00 0.00 0.00 5.52
2431 2520 1.406205 GGGAAGAAGGGAGAGAAAGCG 60.406 57.143 0.00 0.00 0.00 4.68
2432 2521 1.630878 TGGGAAGAAGGGAGAGAAAGC 59.369 52.381 0.00 0.00 0.00 3.51
2433 2522 2.909662 AGTGGGAAGAAGGGAGAGAAAG 59.090 50.000 0.00 0.00 0.00 2.62
2434 2523 2.907042 GAGTGGGAAGAAGGGAGAGAAA 59.093 50.000 0.00 0.00 0.00 2.52
2435 2524 2.112691 AGAGTGGGAAGAAGGGAGAGAA 59.887 50.000 0.00 0.00 0.00 2.87
2436 2525 1.719378 AGAGTGGGAAGAAGGGAGAGA 59.281 52.381 0.00 0.00 0.00 3.10
2437 2526 2.107366 GAGAGTGGGAAGAAGGGAGAG 58.893 57.143 0.00 0.00 0.00 3.20
2438 2527 1.433199 TGAGAGTGGGAAGAAGGGAGA 59.567 52.381 0.00 0.00 0.00 3.71
2439 2528 1.552792 GTGAGAGTGGGAAGAAGGGAG 59.447 57.143 0.00 0.00 0.00 4.30
2440 2529 1.132849 TGTGAGAGTGGGAAGAAGGGA 60.133 52.381 0.00 0.00 0.00 4.20
2441 2530 1.352083 TGTGAGAGTGGGAAGAAGGG 58.648 55.000 0.00 0.00 0.00 3.95
2442 2531 2.417924 CGATGTGAGAGTGGGAAGAAGG 60.418 54.545 0.00 0.00 0.00 3.46
2443 2532 2.886081 CGATGTGAGAGTGGGAAGAAG 58.114 52.381 0.00 0.00 0.00 2.85
2444 2533 1.066858 GCGATGTGAGAGTGGGAAGAA 60.067 52.381 0.00 0.00 0.00 2.52
2445 2534 0.532573 GCGATGTGAGAGTGGGAAGA 59.467 55.000 0.00 0.00 0.00 2.87
2446 2535 0.460987 GGCGATGTGAGAGTGGGAAG 60.461 60.000 0.00 0.00 0.00 3.46
2447 2536 1.596934 GGCGATGTGAGAGTGGGAA 59.403 57.895 0.00 0.00 0.00 3.97
2448 2537 2.710902 CGGCGATGTGAGAGTGGGA 61.711 63.158 0.00 0.00 0.00 4.37
2449 2538 2.202797 CGGCGATGTGAGAGTGGG 60.203 66.667 0.00 0.00 0.00 4.61
2450 2539 2.202797 CCGGCGATGTGAGAGTGG 60.203 66.667 9.30 0.00 0.00 4.00
2451 2540 2.887568 GCCGGCGATGTGAGAGTG 60.888 66.667 12.58 0.00 0.00 3.51
2452 2541 3.362399 CTGCCGGCGATGTGAGAGT 62.362 63.158 23.90 0.00 0.00 3.24
2453 2542 2.584418 CTGCCGGCGATGTGAGAG 60.584 66.667 23.90 6.88 0.00 3.20
2454 2543 4.819761 GCTGCCGGCGATGTGAGA 62.820 66.667 23.90 0.00 0.00 3.27
2468 2557 4.193334 TCGATCCGGTGCTCGCTG 62.193 66.667 15.64 0.00 37.59 5.18
2469 2558 4.194720 GTCGATCCGGTGCTCGCT 62.195 66.667 15.64 0.00 37.59 4.93
2471 2560 4.907034 CCGTCGATCCGGTGCTCG 62.907 72.222 14.70 14.70 43.07 5.03
2478 2567 0.029035 CCTTGTAGTCCGTCGATCCG 59.971 60.000 0.00 0.00 0.00 4.18
2479 2568 0.248949 GCCTTGTAGTCCGTCGATCC 60.249 60.000 0.00 0.00 0.00 3.36
2480 2569 0.454600 TGCCTTGTAGTCCGTCGATC 59.545 55.000 0.00 0.00 0.00 3.69
2481 2570 0.892755 TTGCCTTGTAGTCCGTCGAT 59.107 50.000 0.00 0.00 0.00 3.59
2482 2571 0.892755 ATTGCCTTGTAGTCCGTCGA 59.107 50.000 0.00 0.00 0.00 4.20
2483 2572 1.278238 GATTGCCTTGTAGTCCGTCG 58.722 55.000 0.00 0.00 0.00 5.12
2484 2573 1.207329 AGGATTGCCTTGTAGTCCGTC 59.793 52.381 0.00 0.00 43.90 4.79
2485 2574 1.276622 AGGATTGCCTTGTAGTCCGT 58.723 50.000 0.00 0.00 43.90 4.69
2486 2575 2.224066 CCTAGGATTGCCTTGTAGTCCG 60.224 54.545 1.05 0.00 43.90 4.79
2487 2576 2.772515 ACCTAGGATTGCCTTGTAGTCC 59.227 50.000 17.98 0.00 43.90 3.85
2488 2577 3.798202 CACCTAGGATTGCCTTGTAGTC 58.202 50.000 17.98 0.00 43.90 2.59
2489 2578 2.092914 GCACCTAGGATTGCCTTGTAGT 60.093 50.000 17.98 0.00 43.90 2.73
2490 2579 2.565841 GCACCTAGGATTGCCTTGTAG 58.434 52.381 17.98 0.00 43.90 2.74
2491 2580 2.710096 GCACCTAGGATTGCCTTGTA 57.290 50.000 17.98 0.00 43.90 2.41
2492 2581 3.577389 GCACCTAGGATTGCCTTGT 57.423 52.632 17.98 0.00 43.90 3.16
2497 2586 2.902343 GCCGGCACCTAGGATTGC 60.902 66.667 24.80 15.97 38.06 3.56
2498 2587 2.588877 CGCCGGCACCTAGGATTG 60.589 66.667 28.98 5.25 0.00 2.67
2499 2588 2.762459 TCGCCGGCACCTAGGATT 60.762 61.111 28.98 0.00 0.00 3.01
2500 2589 3.227276 CTCGCCGGCACCTAGGAT 61.227 66.667 28.98 0.00 0.00 3.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.