>input_sequence_77667
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-----------------------------------------------------------------------------ATG
GGAAGAAGGAGAAGCCCGGCGCTGCCGCTGCTGGT---GATCTTTGGCGTCCTCGCCGTCGTCCTCGCAGCTCTTCCTCC
GCTCGCCGAATCCAGCAGCAGCCACCACCACCACCAC------GGCCATGGCCATCACTCCCGCGTCCAAAGCAGAGGTA
CGAGCAAGATATTTTTGTTCCTTCCTAGTAGGAGTGC----ACGGAATAGTCTGGAAATGAG----------CT------
---TGTGACTGATTGGGGATGAAATTATCTCTTGA---TTGCAGGGCACGGAGGAGAGGAAGAGCAGTCGG---CGGCTG
CGGCGGCGGCGAAGGCGAGGGGGAGCGCGTGGCCGTGCTGCGACAGCTGCGGCGGGTGCACCAAGTCGGACACGCCGCAG
TGCCGGTGCATGGACGCGGCGCCCGTCGGGTGCCACCCGGCGTGCCGGGACTGCGTCAGGTCCCCCCTCGCCGTGCACCC
GGCCGTGTACCAGTGCATGGACCGCGTCCCCAACTTCTGCCAGCGGCGCTGCA---GCGCCATCGCCGCCCACTGA----
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>chr5A_1_TraesCS5A01G484800
TGGGCGTCGAGGTCACCAAGATGGAGTTTGTTCACACGACTATGGACCGGATGAAGGGAGAGCACCGTCATGTACTGCAT
CGTCATCAACATCGCCAACAACATCTATAATGCGGATGTTGAGGATCTAGACCACACACTTCATTTGGCTACAATGAAGC
GGTTGTCGGCATATGCACTCAGACTACACAAGAAA-ACAATTGAAAGAAACAAATTATACGTGGTACTCCCTCCGCCTAG
AAGTACTTGTCAGGGAAATGGAGTTATCTAGACGTATTTTAATTCAAGATACATTCATTTTTACCCCTTTCTTCAACAAG
TATTTCGGAACGGAGGTACTATTTCACAAGAAAATGGTTCACACTGTGTGCAAATTAACACACATTGTGACAAAACGATC
TCGCACGCACAATCTATTAAGCTCGTGGCCCATTTTTGCTACATTTTCACAATCTATTAAGTTCGTGGCCGATTTTTGCC
ACATTTTCCCAAATTTGTGAGTATTCACATCCCTGGCAAGTTCATGGGTCAGCGGTGGGCTTTACATGGAGTCTTGGCTC
---------------------------CATGCTCTCTAAAAGAAAAAGGGAAATCTCTACTAAACGGCAAATGTTCTGTA
CTTATCTGCACTTCTTAGAAAAAGCATGGACTGCCCTGCAAAAG-GAGAACACTTGTGATAAACCTGCAATCCTATCACC
AGCACGACGCTCCCATCAAGTCCAAAAGAAAAGAAAAAAAAAGAAAAAAAACACGACGCTCCCATCAAAGTTTATCCAAT
C--CTCTGCCCGTTGCCGGCGTCTCAGTGGGCATGCGCACGCAGGTTTGCTTCTCACTGTCCGGGGCCCCGTCTCCTATA
AGATGACCCGAGGCTTCTGTTTGCCGCGTACAGATACAAGATAGAGGCCATAGCCAGAGAGACCCAGCAAACAGAGCAAG
TCTTCCACGCCCGCCAGTTCTTGCAAGAGAGGAAAGAAATCGAAGAGGCAGAGAAGCAGAGAGAG------ACAGAGATG
GGAAGAAGGAGAAGCCCGGCGCTGCCGCTGCTGGT---GATCTTTGGCGTCCTCGCCGTCGTCCTCGCAGCTCTTCCTCC
GCTCGCCGAATCCAGCAGCAGCCACCACCACCACCAC------GGCCATGGCCATCACTCCCGCGTCCAAAGCAGAGGTA
CGAGCAAGATATTTTTGTTCCTTCCTAGTAGGAGTGC----ACGGAATAGTCTGGAAATGAG----------CT------
---TGTGACTGATTGGGGATGAAATTATCTCTTGA---TTGCAGGGCACGGAGGAGAGGAAGAGCAGTCGG---CGGCTG
CGGCGGCGGCGAAGGCGAGGGGGAGCGCGTGGCCGTGCTGCGACAGCTGCGGCGGGTGCACCAAGTCGGACACGCCGCAG
TGCCGGTGCATGGACGCGGCGCCCGTCGGGTGCCACCCGGCGTGCCGGGACTGCGTCAGGTCCCCCCTCGCCGTGCACCC
GGCCGTGTACCAGTGCATGGACCGCGTCCCCAACTTCTGCCAGCGGCGCTGCA---GCGCCATCGCCGCCCACTGACCGT
GACCGGCCGGGGCAACCGACCAGCTGACCAACCG-CCCACCCCACCTACCGCCACCGGCGACGGACGAATCTTGATGGCA
TCACGGCCAGAGATGCCAGCCAGCCGGCCACCTTTTTTTGTTGTTAATT-AGGCGCGGCTTGTCCTGTTGACTTGACTCT
GTAACACGTATGGCTTCTTGTGTAAAGTGGAGTATAAACACGTATGGCTTCTTGTGTAAAGTGGAGTATAAACAAGCTGG
GCTTGGGTTTGTTTGAGCGACTCCGAGTCTCGTCCT-----CCGCACCTTGTTTATCTCTCGAGACAGAGTTGTTGGTAA
TTAT-AAGTTCATTATTGGAGGGGTGACTGAATAACAAATACTCATACGCTCCTACTGGTCTTGCATCTGACGCAGCACA
CCACCGGTCACCGGACCGGAGGATGAACCTGGACGCGGTCGGGCATCGACGTCCTGCTCCAGGGGAGGGCAAGGAGCTAA
GCT-GATGGACGTTGGGCACGTTGCACTGCGCA-AGAGCATGGAAAATCTAGTGATCCGCATTTCGAGAGGATATGCGTC
GCCTATTACACGTTACTTTACTTTGCATACCAGTTGAGCGACACGTACATATCTCACGACGCCGGGAAAGGGGAATATGC
GCTCCCAGGAAGATATACGATGGATGCATTTGCTTGCTCGCAATGGGCTCACGCAGTCCGGGTAGGAAGAAATTGATCCG
TTTAATTGATTGAGTCGCATCCAAGAGCTGGCTTGACGAACCTTAAAACATCTTTGGGTCTGGAAGGGGAATCGGCCGTG
TTTGCACAGTCAGCCCGAGCGATGCAACCTAGGGCACGTGGGTGTGGGCAGTTACACACCTAGAGGCGACCTCGAGGCGT
TGCGTCGTTTCTGGAAGCCGCGACATAAATTACCCTCACCGCTTTCTCTCCCTTCTTCCCACTCTCACATCGCCGGCAGC
GAGCACCGGATCGACGGACTACAAGGCAATCCTAGGTGCCGGCGAG
>chr5D_1
TGGGCGTCGAGGTCACCAGGATGGAGTTTGTTCACACGACTGTGGACCAGATGAAGGG-GAGCACCGCCATGTACCGCTT
CGTCATCAACATCGCCAACAACATCTAGAATGCGGATGTTGGGGATCTAAACCACACACTTCATTTGGCTACAATGAAGC
GGTTGTTGACATATGCACTCAAACTACACAAGAGAGACAATTGAAAGAAACAAACTATATGTGGTACTCCCTCCATCCAG
AAATACTTCTTAGAGAAATGGAGGTATCTAGATGTATTTTAGTTCAAGATACATCAATTTTTACTTATTTCTCTGACCAG
TATTTCAGAATGGAGGGAGTATTTCACAAGAAAATGGCTCACGCCGTGTGCAAGTTAACACACGTTGTGACAAAACGATC
TCGCACACACAATCTATTAAGTTTGTGGCCGATTTTTGCCACATTTTCACAATCTATTAAGTACGTGACTGATTTTGGCC
ACATTTTCCCAAATTTGCGAGTATTCACATCCCTGGCAAGTTCATGGTTCAACGGTGGGCGTTACTTGGAGTCTTGGCTC
---------------------------CATGCTCTCTAAACGAAAAAGGAAGATCTCTACTAAACCGCAAATGTTCTGTA
CTTATCTGCAATTTTTAGAAAAAGCACGGACTGCCCTGCAAAAG-GAGAACACTCGTGATAAACCTGCAATCCTATCACC
AGCACGACGCTCCCATCAACTCAAAAATTAAAAAGGAAAG------AAAAACACGACGCTCCCATCAAAGTTTATCCAAT
C--CTCTGCCCGTTGCCGGCGTCTGAGTGGGCAGCCGCACGCAGCTTTGCTTCTCACTGTCCGGGGCCCCTTCTCCTATA
AGATGACCCGAGGCTTCTGTTTGCCGCGTACAGATAGAAGATAGAGGCCATTGCCAGAGAGACCCAGCAACCAGCAACCA
GAGAGGCCATAGCCAAGTTCTTGCAAGAGAGGAAAGAAATCGAAGAGGCAGAGAAACAGAGGGAG------GCAGAGATG
GGAAGAAGAAGAAGCCCGGCTCTGCCGCTGC---TGGTGATCTTCGGCATCCTCGCCGTCGTCCTCGCAGCTCTTCCTCC
CCTCGCCGAATCCAGCAGCAGCCACCACCACCACCACCACCAAGGCCACGGCCACCACTCCCGTGTCCAAAGCAGAGGTA
--AGCAACACCTTCTGGTTGCATCCTAACGCACCCTCCACGACGGAGCAGTGTGGCAGATGAGATTAATCAGCTTGTGTT
GTGCGTGACTAATTGGGGATGAAATTATCTCT--GGGTTTGCAGGGCACGGAGGAGAGGGAGAGCAGTCGTCCT---CGG
CGGCGGCGGCGAAGGCGAGGGGGAGAGCGTGGCCGTGCTGCGACAGCTGCGGCGGGTGCACCAAGTCGGACTCGCCGCAG
TGCCGGTGCATGGACGCGGCGCCCGGCGGGTGCCACCCGGCGTGCCGGGACTGCGTCAAGTCACCCCTCGCCGTGCACCC
GGCCGTGTACCAGTGCATGGACCGCGTCCCCAACTTCTGCCAGCGGCGCTGCAACGGCGCCGTCGCCGCCCACTGACCGT
GACCGGCCGGGGCAACCGACCAGCTGACCAACCGCCCCACCACACCTACCGCCACCGGCGACGGACGAATCTTGATGGCA
TCACGGCCCGAGATGCCAGCCAGCCACTATT-TTTTGTTTTTGTTAATT-AGGCGCGGCTTGTCCTGTTGACTTGACTCT
GTAACACGTATGGCTTCTTGTGTAAAGTGGAGTATAAA--------------------------------AACAAGCTGG
ACTTGGGTTTGTTTGAGCGACTCCGAGTCTCGTCCT-----CTGCATCATGTTTATCTCTCGAGACAGAGTTGTTGGTAA
TTATCAAGTTCATTATTGGAGGGGTGACCGAATAACAAATACTCCTACTCTCCTACTGATCTTGCGCCTGACGCAGCACA
CCACCGGTC-----ACCCGAGGATGAACCTGGACGCGGTCCGGCATCGACGTCGTGCTCCAGGGGAGGGGAAGGAGCTAG
CTGAGATGGACGTTGGGCACGTTGCACTGCACAGAGAGCATGGAAAATGTAGTGATCCGCATTTCGAGAGGATATGCGTC
GCCTATTACACGTTACTTTACTTTGCATCAACCAG------------------TCACGACGCCGGGAAAGGGGAATATGC
GCTCTCAGGAAGGTATGCTATG----------------------------------------------------------
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>chr5B_1
TGGGCGTCGAGGTCACCAAGATGGAGTTTGTTCACACGATTATGCACCGGATGAAGGG-GAACACCATCATGTACCGCTT
CTTCATCAACATTGCCAACAACATCTAAATGCC-GATGTTGAGGGTCTAGAACACACACTTCATTTGGCTACAATGAAGC
GGTTGTTGACATATGCACTCAAACTACACAAG-------------AGAAACAAACTATATGTGGTACTCCCTCCGTCCAA
AAATATTTGTCAGAGAAATGGA-GTATTTAAACGTATTTTAGTTCATGATACATCCATTTTTATTCATTTCTCCGACAAG
TATTTTAGAACGGAGGGAGTATTTCACAAGAAAATGGCTCACACCGTGTGCAAGTTAACACACTC-GTGACAAAACGATC
TCGCATACACAATCTATCAAGTTCGTGACCGAATTTTGCCACATTTA---------------------------------
--------CCAAATTTGTGAGTATTCACATCCCCGACAAGCTCATGGATCAACGGCGGGCTTTACTTGGAATCTTGGCTC
ATGCTCTCTTTACTTGGAATCTTGGCTCATGCTCTCTAAATGAAAAAGAAAAATCTCTACTAAACGGCAAATGTTCTGTA
CTTATCTGTAATCTTTAGAAAACGCACGGACTACGCTGCAAAAATGAGAACACTAGTGATAAACCTTCAATCCTATCACC
AGCACGACGCTCCCATCAACTCCAAAAGAAAAAGGGGAAA------GAAAACAC-----------------TTATCCAAT
CCTCTCTGCCCGTTGCCGGCGTCTCAGTGGGCAGCCGCACGCAGCTTTGCTTCTCACTGTCCAGGGCCCCGTCTTCTATA
AGATGACCCCAGGCTTCTGTTTGCCGCGTACAGATAGAAGATAGAGGCCATAGCCAGAGAGACCAAGCAACCAGAGAAGC
CGTAG--------CAAGTTCCTGCGAGAGAGGAAAGAAATCGAAGAGGGAGAGATATAGTGAGTGACACACACAGAGATG
GGAAGAAGAAGAAGCCTGGCGCCGCTGCTGC---T---GATCTTTGGCGTCCTCGCCGTCGTGCTCGCGGCTCTTGCGCC
CGTCGCCGAATCCAGCAGCAGCCACCACCACCACCAC------GGCCATGGCCATCACTCCCGTGTCCAAAGCAGAGGTA
--AGCAAGATCATCTTGTTGCATCCTAGAGCACCTTCCATGACGGAATAGGGTGGCAGATCGATCTGTTTACCT------
---CGTGACTAATTGGGAACGAAACTATATCTCTGGATTTGCAGGGCACGGAGGAGAGGGGGAGCAATCGTCCTCGGCGG
CGGCGGCGGCGAAGGCGAGGGGGAGCGCGTGGCCGTGCTGCGACAGCTGCGGCGGGTGCACCAAGTCGGACACGCCGCAG
TGCCGGTGCATGGACGCGGCGCCCGGCGGGTGCCACCCGGCGTGCCGGGACTGCGTCAGGTCCGCCCTCGCCGTGCACCC
GGCCGTGTACCAGTGCATGGACCGCGTCCCCAACTTCTGCCAGCGGCGCTGCA---GCGCCATCGCCGCCCACTGACCGT
GACCGGCCGGGGCAACCGACCAGCTGACCAACCGCCCCACCACACCTACCGCCACCGGCGACGGACGAATCTTGATGGCA
TCACGGACAGAGATGCCAGCCAGCCACACCT-TTTTTTTGTTGTTAATTAAGGCGCGGCTTGTCCTGTTGACTTGACTCT
GTAACACGTATGGCTTCTTGTGTAAATTGGAGTATAAACA---------------------------------AAGCTGG
ACTTGGGTTTGTTTGAGCGACTCCGAGTCTCGTCCTCTGCACTGCATCTTGTTTATCTCTCGAGACAGAGTTGTTGGTAA
TTAACAAGTTCATTATTGGAGGGGTGACCGAATA-------CTCCTACTCTCCTACAGATCTTGCATCTGACGCAGCACA
GCACCGGTCGCCGGACCGGATGACGAACCTCGACGCGGTCGGGCATCGGCGTCGTGCTCCAGGGGAGGGGAAGGAGCTAG
CTGAGATCGACGTTGGGCACGTTGCACTGCACAGAGAGCGTGGAAAATCTAGTGAT------------------------
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>SNPs
----------------------------------------------------------S----------------S--S-
---------------------------S----------------------------------------------------
------S-S------------S-----------S--------------------S----S---------------S-S--
--S----------S---------S-----------------S------------S---------S-S-----S-S-----
------S---------S-S------------------S------S--------S---------S----------------
------S--------------S--------S--------S----------------------S----S-S------S---
-----------------------------------------------S---S-------------S--------------
----------------------------------------S--------S------------------------------
----------S--S------------S---------------------------S-------------------------
-------------------S------------S-SS----SSSSSS----------------------------------
---------------------------------SS---------S-----------------------------------
------------------------------------S---------------------------------S-----S-SS
SS-SSSS-SSSSS-S----------------------------------------S------------------------
--------S----------------------SSS----------------------------------------------
S--------------------------------------------------------------S----------------
SS--------S--S-----S-S------SSSSSS-S---------------S---S-SSSS-------------------
---S------S---------------------SSS------------------------S----------S-------S-
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-------------------------S------------------------------------------------------
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-----------------------------------------S--------------------------------------
-------------------------SSS-SSS------------------------------------------------
----------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------
S-----------------------------------------S---S---------------------------------
----------------------------S---------------S---S---------S---------------------
---------S-------------------------------------------S---------------S---------S
SSS---------------------------S-------------------------------------------------
----------------------------SSSSSSSSSSSSSSSSSSSSSSSSS---------------------------
----S-------S---S-S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_528
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----------------------------ATCCCTGGCAAGTTCATGGG--------------------------------
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>reverse_2567
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------CGGATCGACGGACTACAAGG--------------------
