Multiple sequence alignment - TraesCS5A01G477400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G477400 chr5A 100.000 2709 0 0 1 2709 651580416 651577708 0.000000e+00 5003.0
1 TraesCS5A01G477400 chr5A 87.413 429 42 6 1077 1493 651788340 651788768 1.460000e-132 483.0
2 TraesCS5A01G477400 chr5A 86.019 422 44 6 1077 1483 651734296 651734717 3.200000e-119 438.0
3 TraesCS5A01G477400 chr5A 87.387 111 10 2 527 633 502541503 502541393 1.020000e-24 124.0
4 TraesCS5A01G477400 chr5D 91.907 1421 77 22 635 2032 525243732 525242327 0.000000e+00 1953.0
5 TraesCS5A01G477400 chr5D 82.640 553 60 21 1077 1617 525321862 525322390 8.840000e-125 457.0
6 TraesCS5A01G477400 chr5D 84.698 464 56 8 2122 2583 525242279 525241829 1.480000e-122 449.0
7 TraesCS5A01G477400 chr5D 82.463 536 68 16 1077 1608 525086436 525085923 1.910000e-121 446.0
8 TraesCS5A01G477400 chr5D 82.037 540 73 18 1077 1607 525325703 525326227 3.200000e-119 438.0
9 TraesCS5A01G477400 chr5D 81.716 536 72 15 1077 1608 525154944 525154431 8.970000e-115 424.0
10 TraesCS5A01G477400 chr5D 80.961 562 68 20 1077 1623 23863569 23864106 2.510000e-110 409.0
11 TraesCS5A01G477400 chr5D 84.010 419 55 8 1077 1483 525305959 525306377 2.530000e-105 392.0
12 TraesCS5A01G477400 chr5D 88.103 311 20 13 183 481 525244034 525243729 1.190000e-93 353.0
13 TraesCS5A01G477400 chr5B 87.053 1707 127 50 635 2307 659597787 659596141 0.000000e+00 1842.0
14 TraesCS5A01G477400 chr5B 82.826 559 63 19 1077 1623 659743614 659744151 1.140000e-128 470.0
15 TraesCS5A01G477400 chr5B 88.161 397 31 13 37 424 659598238 659597849 2.460000e-125 459.0
16 TraesCS5A01G477400 chr5B 79.099 555 73 30 1077 1617 659463189 659462664 2.580000e-90 342.0
17 TraesCS5A01G477400 chr3A 86.047 172 11 5 474 633 27735614 27735784 3.590000e-39 172.0
18 TraesCS5A01G477400 chr3A 86.207 116 7 3 524 636 309340474 309340583 1.700000e-22 117.0
19 TraesCS5A01G477400 chr1A 83.815 173 12 11 475 633 547378560 547378390 1.680000e-32 150.0
20 TraesCS5A01G477400 chr1A 83.815 173 12 11 475 633 547379769 547379599 1.680000e-32 150.0
21 TraesCS5A01G477400 chr1A 87.069 116 10 4 524 637 53467529 53467641 2.830000e-25 126.0
22 TraesCS5A01G477400 chr1A 88.073 109 8 4 527 633 53467627 53467522 1.020000e-24 124.0
23 TraesCS5A01G477400 chr4A 90.566 106 9 1 527 631 594217276 594217171 3.640000e-29 139.0
24 TraesCS5A01G477400 chr4A 81.944 144 14 4 502 633 567877945 567878088 7.930000e-21 111.0
25 TraesCS5A01G477400 chr7A 88.696 115 8 2 524 633 676923475 676923589 4.700000e-28 135.0
26 TraesCS5A01G477400 chr2A 88.596 114 7 2 527 634 329179994 329179881 1.690000e-27 134.0
27 TraesCS5A01G477400 chr6A 88.182 110 8 4 527 634 543531533 543531427 2.830000e-25 126.0
28 TraesCS5A01G477400 chr2B 81.287 171 19 8 483 642 17171640 17171808 2.830000e-25 126.0
29 TraesCS5A01G477400 chr2B 96.226 53 1 1 470 522 784303782 784303731 4.810000e-13 86.1
30 TraesCS5A01G477400 chr3D 96.154 52 2 0 477 528 160615987 160615936 4.810000e-13 86.1
31 TraesCS5A01G477400 chr4D 92.982 57 3 1 481 536 108906247 108906303 6.220000e-12 82.4
32 TraesCS5A01G477400 chr4B 95.918 49 2 0 474 522 660179403 660179355 2.240000e-11 80.5
33 TraesCS5A01G477400 chr1D 86.957 69 5 3 478 542 387472816 387472884 1.040000e-09 75.0
34 TraesCS5A01G477400 chr1D 83.333 78 10 3 1241 1316 383178101 383178025 4.840000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G477400 chr5A 651577708 651580416 2708 True 5003.000000 5003 100.0000 1 2709 1 chr5A.!!$R2 2708
1 TraesCS5A01G477400 chr5D 525241829 525244034 2205 True 918.333333 1953 88.2360 183 2583 3 chr5D.!!$R3 2400
2 TraesCS5A01G477400 chr5D 525321862 525326227 4365 False 447.500000 457 82.3385 1077 1617 2 chr5D.!!$F3 540
3 TraesCS5A01G477400 chr5D 525085923 525086436 513 True 446.000000 446 82.4630 1077 1608 1 chr5D.!!$R1 531
4 TraesCS5A01G477400 chr5D 525154431 525154944 513 True 424.000000 424 81.7160 1077 1608 1 chr5D.!!$R2 531
5 TraesCS5A01G477400 chr5D 23863569 23864106 537 False 409.000000 409 80.9610 1077 1623 1 chr5D.!!$F1 546
6 TraesCS5A01G477400 chr5B 659596141 659598238 2097 True 1150.500000 1842 87.6070 37 2307 2 chr5B.!!$R2 2270
7 TraesCS5A01G477400 chr5B 659743614 659744151 537 False 470.000000 470 82.8260 1077 1623 1 chr5B.!!$F1 546
8 TraesCS5A01G477400 chr5B 659462664 659463189 525 True 342.000000 342 79.0990 1077 1617 1 chr5B.!!$R1 540

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
853 890 0.099436 GGCTTGCAGCGATTGGTTAG 59.901 55.0 0.0 0.0 43.62 2.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2451 6435 0.400213 TGATCCAGCCAAGAAACCGT 59.6 50.0 0.0 0.0 0.0 4.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 6.652205 TCTTGTAGGGGAATAATTTCTGGT 57.348 37.500 0.00 0.00 32.16 4.00
25 26 7.039722 TCTTGTAGGGGAATAATTTCTGGTT 57.960 36.000 0.00 0.00 32.16 3.67
26 27 7.116736 TCTTGTAGGGGAATAATTTCTGGTTC 58.883 38.462 0.00 0.00 32.16 3.62
27 28 6.395780 TGTAGGGGAATAATTTCTGGTTCA 57.604 37.500 0.00 0.00 32.16 3.18
28 29 6.795590 TGTAGGGGAATAATTTCTGGTTCAA 58.204 36.000 0.00 0.00 32.16 2.69
29 30 6.661805 TGTAGGGGAATAATTTCTGGTTCAAC 59.338 38.462 0.00 0.00 32.16 3.18
30 31 4.705023 AGGGGAATAATTTCTGGTTCAACG 59.295 41.667 0.00 0.00 32.16 4.10
31 32 4.461431 GGGGAATAATTTCTGGTTCAACGT 59.539 41.667 0.00 0.00 32.16 3.99
32 33 5.392703 GGGGAATAATTTCTGGTTCAACGTC 60.393 44.000 0.00 0.00 32.16 4.34
33 34 5.321516 GGAATAATTTCTGGTTCAACGTCG 58.678 41.667 0.00 0.00 32.16 5.12
34 35 4.939509 ATAATTTCTGGTTCAACGTCGG 57.060 40.909 0.00 0.00 0.00 4.79
35 36 2.249844 ATTTCTGGTTCAACGTCGGT 57.750 45.000 0.00 0.00 0.00 4.69
36 37 1.574134 TTTCTGGTTCAACGTCGGTC 58.426 50.000 0.00 0.00 0.00 4.79
37 38 0.249573 TTCTGGTTCAACGTCGGTCC 60.250 55.000 0.00 0.00 0.00 4.46
38 39 1.068417 CTGGTTCAACGTCGGTCCA 59.932 57.895 0.00 0.00 0.00 4.02
39 40 1.219522 CTGGTTCAACGTCGGTCCAC 61.220 60.000 0.00 0.00 0.00 4.02
40 41 1.957695 GGTTCAACGTCGGTCCACC 60.958 63.158 0.00 0.00 0.00 4.61
41 42 1.068585 GTTCAACGTCGGTCCACCT 59.931 57.895 0.00 0.00 0.00 4.00
42 43 0.314935 GTTCAACGTCGGTCCACCTA 59.685 55.000 0.00 0.00 0.00 3.08
46 47 1.796459 CAACGTCGGTCCACCTAAAAG 59.204 52.381 0.00 0.00 0.00 2.27
66 67 3.081804 AGGTTTTTAGGCGAATCACCTG 58.918 45.455 0.00 0.00 38.26 4.00
67 68 3.078837 GGTTTTTAGGCGAATCACCTGA 58.921 45.455 0.00 0.00 38.26 3.86
78 79 3.321968 CGAATCACCTGATATCCACTCCA 59.678 47.826 0.00 0.00 33.73 3.86
79 80 4.202253 CGAATCACCTGATATCCACTCCAA 60.202 45.833 0.00 0.00 33.73 3.53
81 82 2.771943 TCACCTGATATCCACTCCAACC 59.228 50.000 0.00 0.00 0.00 3.77
82 83 2.774234 CACCTGATATCCACTCCAACCT 59.226 50.000 0.00 0.00 0.00 3.50
83 84 3.200825 CACCTGATATCCACTCCAACCTT 59.799 47.826 0.00 0.00 0.00 3.50
84 85 4.408921 CACCTGATATCCACTCCAACCTTA 59.591 45.833 0.00 0.00 0.00 2.69
85 86 5.036916 ACCTGATATCCACTCCAACCTTAA 58.963 41.667 0.00 0.00 0.00 1.85
86 87 5.672194 ACCTGATATCCACTCCAACCTTAAT 59.328 40.000 0.00 0.00 0.00 1.40
87 88 6.160459 ACCTGATATCCACTCCAACCTTAATT 59.840 38.462 0.00 0.00 0.00 1.40
94 95 2.378547 ACTCCAACCTTAATTGGCTGGA 59.621 45.455 6.74 6.74 46.62 3.86
95 96 3.534357 TCCAACCTTAATTGGCTGGAA 57.466 42.857 4.80 0.00 46.04 3.53
101 102 5.256806 ACCTTAATTGGCTGGAACTTAGT 57.743 39.130 0.00 0.00 0.00 2.24
111 112 3.619242 GCTGGAACTTAGTCCCCAAGTAC 60.619 52.174 7.62 0.00 35.19 2.73
114 115 4.600111 TGGAACTTAGTCCCCAAGTACATT 59.400 41.667 4.37 0.00 35.19 2.71
141 144 1.464997 GAGATCTTTTCGCCACACACC 59.535 52.381 0.00 0.00 0.00 4.16
142 145 1.072331 AGATCTTTTCGCCACACACCT 59.928 47.619 0.00 0.00 0.00 4.00
161 164 6.538381 CACACCTTTAATTGGCTGAAACTTTT 59.462 34.615 0.00 0.00 0.00 2.27
213 217 4.603535 GGTTGGCAGGCTGGGTGT 62.604 66.667 17.64 0.00 0.00 4.16
224 228 0.872388 GCTGGGTGTACTTTGAACGG 59.128 55.000 0.00 0.00 0.00 4.44
228 232 1.219646 GGTGTACTTTGAACGGCGAA 58.780 50.000 16.62 0.00 0.00 4.70
236 240 0.444651 TTGAACGGCGAAAATAGCGG 59.555 50.000 16.62 0.00 40.19 5.52
255 261 1.812922 CAGCTCCACATCCAGCGTC 60.813 63.158 0.00 0.00 40.84 5.19
284 294 1.581954 CGAGAGCAAGTCACCGTCT 59.418 57.895 0.00 0.00 0.00 4.18
285 295 0.803117 CGAGAGCAAGTCACCGTCTA 59.197 55.000 0.00 0.00 0.00 2.59
410 421 1.537202 CCTTGGCCAGAAAGAAACTCG 59.463 52.381 5.11 0.00 0.00 4.18
424 435 4.815269 AGAAACTCGAGAACATTCCAGAG 58.185 43.478 21.68 10.58 37.29 3.35
425 436 2.663826 ACTCGAGAACATTCCAGAGC 57.336 50.000 21.68 0.00 35.77 4.09
426 437 1.135257 ACTCGAGAACATTCCAGAGCG 60.135 52.381 21.68 0.00 35.77 5.03
427 438 0.888619 TCGAGAACATTCCAGAGCGT 59.111 50.000 0.00 0.00 0.00 5.07
428 439 1.135373 TCGAGAACATTCCAGAGCGTC 60.135 52.381 0.00 0.00 0.00 5.19
429 440 1.272781 GAGAACATTCCAGAGCGTCG 58.727 55.000 0.00 0.00 0.00 5.12
430 441 0.888619 AGAACATTCCAGAGCGTCGA 59.111 50.000 0.00 0.00 0.00 4.20
431 442 0.992802 GAACATTCCAGAGCGTCGAC 59.007 55.000 5.18 5.18 0.00 4.20
432 443 0.603569 AACATTCCAGAGCGTCGACT 59.396 50.000 14.70 0.00 0.00 4.18
433 444 0.171455 ACATTCCAGAGCGTCGACTC 59.829 55.000 14.70 5.55 36.91 3.36
434 445 0.526524 CATTCCAGAGCGTCGACTCC 60.527 60.000 14.70 4.44 37.39 3.85
435 446 1.668101 ATTCCAGAGCGTCGACTCCC 61.668 60.000 14.70 0.00 37.39 4.30
436 447 3.062466 CCAGAGCGTCGACTCCCA 61.062 66.667 14.70 0.00 37.39 4.37
437 448 2.487428 CAGAGCGTCGACTCCCAG 59.513 66.667 14.70 0.00 37.39 4.45
438 449 2.752238 AGAGCGTCGACTCCCAGG 60.752 66.667 14.70 0.00 37.39 4.45
481 517 4.022676 GCAGCCTGGACTATTCTACTACTC 60.023 50.000 0.00 0.00 0.00 2.59
482 518 4.521256 CAGCCTGGACTATTCTACTACTCC 59.479 50.000 0.00 0.00 0.00 3.85
483 519 3.827876 GCCTGGACTATTCTACTACTCCC 59.172 52.174 0.00 0.00 0.00 4.30
484 520 4.448054 GCCTGGACTATTCTACTACTCCCT 60.448 50.000 0.00 0.00 0.00 4.20
485 521 5.318630 CCTGGACTATTCTACTACTCCCTC 58.681 50.000 0.00 0.00 0.00 4.30
486 522 5.318630 CTGGACTATTCTACTACTCCCTCC 58.681 50.000 0.00 0.00 0.00 4.30
487 523 4.202440 TGGACTATTCTACTACTCCCTCCG 60.202 50.000 0.00 0.00 0.00 4.63
488 524 4.202451 GGACTATTCTACTACTCCCTCCGT 60.202 50.000 0.00 0.00 0.00 4.69
489 525 5.375773 GACTATTCTACTACTCCCTCCGTT 58.624 45.833 0.00 0.00 0.00 4.44
490 526 5.764432 ACTATTCTACTACTCCCTCCGTTT 58.236 41.667 0.00 0.00 0.00 3.60
491 527 5.827267 ACTATTCTACTACTCCCTCCGTTTC 59.173 44.000 0.00 0.00 0.00 2.78
492 528 2.636830 TCTACTACTCCCTCCGTTTCG 58.363 52.381 0.00 0.00 0.00 3.46
493 529 2.237143 TCTACTACTCCCTCCGTTTCGA 59.763 50.000 0.00 0.00 0.00 3.71
494 530 1.915141 ACTACTCCCTCCGTTTCGAA 58.085 50.000 0.00 0.00 0.00 3.71
495 531 2.454538 ACTACTCCCTCCGTTTCGAAT 58.545 47.619 0.00 0.00 0.00 3.34
496 532 2.830321 ACTACTCCCTCCGTTTCGAATT 59.170 45.455 0.00 0.00 0.00 2.17
497 533 4.019174 ACTACTCCCTCCGTTTCGAATTA 58.981 43.478 0.00 0.00 0.00 1.40
498 534 3.242549 ACTCCCTCCGTTTCGAATTAC 57.757 47.619 0.00 0.00 0.00 1.89
499 535 2.830321 ACTCCCTCCGTTTCGAATTACT 59.170 45.455 0.00 0.00 0.00 2.24
500 536 3.260128 ACTCCCTCCGTTTCGAATTACTT 59.740 43.478 0.00 0.00 0.00 2.24
501 537 3.592059 TCCCTCCGTTTCGAATTACTTG 58.408 45.455 0.00 0.00 0.00 3.16
502 538 3.007182 TCCCTCCGTTTCGAATTACTTGT 59.993 43.478 0.00 0.00 0.00 3.16
503 539 3.370061 CCCTCCGTTTCGAATTACTTGTC 59.630 47.826 0.00 0.00 0.00 3.18
504 540 4.243270 CCTCCGTTTCGAATTACTTGTCT 58.757 43.478 0.00 0.00 0.00 3.41
505 541 4.689345 CCTCCGTTTCGAATTACTTGTCTT 59.311 41.667 0.00 0.00 0.00 3.01
506 542 5.389516 CCTCCGTTTCGAATTACTTGTCTTG 60.390 44.000 0.00 0.00 0.00 3.02
507 543 4.449743 TCCGTTTCGAATTACTTGTCTTGG 59.550 41.667 0.00 0.00 0.00 3.61
508 544 4.449743 CCGTTTCGAATTACTTGTCTTGGA 59.550 41.667 0.00 0.00 0.00 3.53
509 545 5.121768 CCGTTTCGAATTACTTGTCTTGGAT 59.878 40.000 0.00 0.00 0.00 3.41
510 546 6.348213 CCGTTTCGAATTACTTGTCTTGGATT 60.348 38.462 0.00 0.00 0.00 3.01
511 547 7.075741 CGTTTCGAATTACTTGTCTTGGATTT 58.924 34.615 0.00 0.00 0.00 2.17
512 548 8.225107 CGTTTCGAATTACTTGTCTTGGATTTA 58.775 33.333 0.00 0.00 0.00 1.40
515 551 9.667107 TTCGAATTACTTGTCTTGGATTTATCT 57.333 29.630 0.00 0.00 0.00 1.98
542 578 9.593134 AGATACATCTGTTCTGAATTACTTGTC 57.407 33.333 0.00 0.00 35.42 3.18
543 579 9.593134 GATACATCTGTTCTGAATTACTTGTCT 57.407 33.333 0.00 0.00 0.00 3.41
544 580 9.950496 ATACATCTGTTCTGAATTACTTGTCTT 57.050 29.630 0.00 0.00 0.00 3.01
545 581 8.092521 ACATCTGTTCTGAATTACTTGTCTTG 57.907 34.615 0.00 0.00 0.00 3.02
546 582 7.173907 ACATCTGTTCTGAATTACTTGTCTTGG 59.826 37.037 0.00 0.00 0.00 3.61
547 583 6.826668 TCTGTTCTGAATTACTTGTCTTGGA 58.173 36.000 0.00 0.00 0.00 3.53
548 584 7.453393 TCTGTTCTGAATTACTTGTCTTGGAT 58.547 34.615 0.00 0.00 0.00 3.41
549 585 7.939039 TCTGTTCTGAATTACTTGTCTTGGATT 59.061 33.333 0.00 0.00 0.00 3.01
550 586 8.463930 TGTTCTGAATTACTTGTCTTGGATTT 57.536 30.769 0.00 0.00 0.00 2.17
551 587 8.352201 TGTTCTGAATTACTTGTCTTGGATTTG 58.648 33.333 0.00 0.00 0.00 2.32
552 588 8.352942 GTTCTGAATTACTTGTCTTGGATTTGT 58.647 33.333 0.00 0.00 0.00 2.83
553 589 8.099364 TCTGAATTACTTGTCTTGGATTTGTC 57.901 34.615 0.00 0.00 0.00 3.18
554 590 7.939039 TCTGAATTACTTGTCTTGGATTTGTCT 59.061 33.333 0.00 0.00 0.00 3.41
555 591 9.219603 CTGAATTACTTGTCTTGGATTTGTCTA 57.780 33.333 0.00 0.00 0.00 2.59
556 592 9.219603 TGAATTACTTGTCTTGGATTTGTCTAG 57.780 33.333 0.00 0.00 0.00 2.43
557 593 9.436957 GAATTACTTGTCTTGGATTTGTCTAGA 57.563 33.333 0.00 0.00 0.00 2.43
558 594 9.965902 AATTACTTGTCTTGGATTTGTCTAGAT 57.034 29.630 0.00 0.00 0.00 1.98
560 596 9.871238 TTACTTGTCTTGGATTTGTCTAGATAC 57.129 33.333 0.00 0.00 0.00 2.24
561 597 7.907389 ACTTGTCTTGGATTTGTCTAGATACA 58.093 34.615 0.00 0.00 0.00 2.29
562 598 8.037758 ACTTGTCTTGGATTTGTCTAGATACAG 58.962 37.037 0.00 0.00 0.00 2.74
563 599 7.718334 TGTCTTGGATTTGTCTAGATACAGA 57.282 36.000 0.00 0.00 0.00 3.41
564 600 7.776107 TGTCTTGGATTTGTCTAGATACAGAG 58.224 38.462 0.00 0.00 0.00 3.35
565 601 7.615757 TGTCTTGGATTTGTCTAGATACAGAGA 59.384 37.037 0.00 0.00 0.00 3.10
566 602 8.637986 GTCTTGGATTTGTCTAGATACAGAGAT 58.362 37.037 0.00 0.00 0.00 2.75
567 603 9.868160 TCTTGGATTTGTCTAGATACAGAGATA 57.132 33.333 0.00 0.00 0.00 1.98
598 634 9.201989 ACACTAAAATGAGGATGTATCTAGACA 57.798 33.333 0.00 0.00 0.00 3.41
603 639 9.566432 AAAATGAGGATGTATCTAGACAAATCC 57.434 33.333 11.82 11.82 31.27 3.01
604 640 7.862274 ATGAGGATGTATCTAGACAAATCCA 57.138 36.000 20.31 3.19 32.88 3.41
605 641 7.675161 TGAGGATGTATCTAGACAAATCCAA 57.325 36.000 20.31 7.16 32.88 3.53
606 642 7.730084 TGAGGATGTATCTAGACAAATCCAAG 58.270 38.462 20.31 0.00 32.88 3.61
607 643 7.565029 TGAGGATGTATCTAGACAAATCCAAGA 59.435 37.037 20.31 2.99 32.88 3.02
608 644 7.731054 AGGATGTATCTAGACAAATCCAAGAC 58.269 38.462 20.31 0.00 32.88 3.01
609 645 7.345653 AGGATGTATCTAGACAAATCCAAGACA 59.654 37.037 20.31 0.00 32.88 3.41
610 646 7.987458 GGATGTATCTAGACAAATCCAAGACAA 59.013 37.037 14.47 0.00 31.42 3.18
611 647 8.954950 ATGTATCTAGACAAATCCAAGACAAG 57.045 34.615 0.00 0.00 31.83 3.16
612 648 7.907389 TGTATCTAGACAAATCCAAGACAAGT 58.093 34.615 0.00 0.00 0.00 3.16
613 649 9.031537 TGTATCTAGACAAATCCAAGACAAGTA 57.968 33.333 0.00 0.00 0.00 2.24
614 650 9.871238 GTATCTAGACAAATCCAAGACAAGTAA 57.129 33.333 0.00 0.00 0.00 2.24
616 652 9.965902 ATCTAGACAAATCCAAGACAAGTAATT 57.034 29.630 0.00 0.00 0.00 1.40
617 653 9.436957 TCTAGACAAATCCAAGACAAGTAATTC 57.563 33.333 0.00 0.00 0.00 2.17
618 654 7.133891 AGACAAATCCAAGACAAGTAATTCG 57.866 36.000 0.00 0.00 0.00 3.34
619 655 6.149474 AGACAAATCCAAGACAAGTAATTCGG 59.851 38.462 0.00 0.00 0.00 4.30
620 656 6.001460 ACAAATCCAAGACAAGTAATTCGGA 58.999 36.000 0.00 0.00 0.00 4.55
621 657 6.488683 ACAAATCCAAGACAAGTAATTCGGAA 59.511 34.615 0.00 0.00 0.00 4.30
622 658 6.496338 AATCCAAGACAAGTAATTCGGAAC 57.504 37.500 0.00 0.00 0.00 3.62
637 673 2.433662 GGAACGGAGGGAGTAGTACT 57.566 55.000 1.37 1.37 0.00 2.73
693 730 2.106332 CCCACGCGGCTAAGGTAG 59.894 66.667 12.47 0.00 0.00 3.18
695 732 2.718073 CCACGCGGCTAAGGTAGGT 61.718 63.158 12.47 0.00 0.00 3.08
696 733 1.226888 CACGCGGCTAAGGTAGGTC 60.227 63.158 12.47 0.00 0.00 3.85
697 734 2.025727 CGCGGCTAAGGTAGGTCG 59.974 66.667 0.00 0.00 0.00 4.79
698 735 2.279318 GCGGCTAAGGTAGGTCGC 60.279 66.667 0.00 0.00 36.51 5.19
699 736 2.783288 GCGGCTAAGGTAGGTCGCT 61.783 63.158 4.71 0.00 40.00 4.93
700 737 1.359475 CGGCTAAGGTAGGTCGCTC 59.641 63.158 0.00 0.00 0.00 5.03
701 738 1.740905 GGCTAAGGTAGGTCGCTCC 59.259 63.158 0.00 0.00 0.00 4.70
776 813 4.406173 ACACGCTCGAGTCGGCTG 62.406 66.667 25.38 19.41 0.00 4.85
777 814 4.406173 CACGCTCGAGTCGGCTGT 62.406 66.667 25.38 13.34 0.00 4.40
778 815 4.406173 ACGCTCGAGTCGGCTGTG 62.406 66.667 25.38 12.04 0.00 3.66
797 834 1.397343 TGCTCGAGTATATCCGATCGC 59.603 52.381 15.13 0.00 35.23 4.58
799 836 2.537931 GCTCGAGTATATCCGATCGCTG 60.538 54.545 15.13 0.00 35.23 5.18
808 845 3.545481 CGATCGCTGGCGTGACAC 61.545 66.667 14.55 0.00 40.74 3.67
851 888 1.902918 TGGCTTGCAGCGATTGGTT 60.903 52.632 0.00 0.00 43.62 3.67
852 889 0.607762 TGGCTTGCAGCGATTGGTTA 60.608 50.000 0.00 0.00 43.62 2.85
853 890 0.099436 GGCTTGCAGCGATTGGTTAG 59.901 55.000 0.00 0.00 43.62 2.34
1063 1151 7.826690 AGAAGAGCAGAAAAAGTACAACAAAA 58.173 30.769 0.00 0.00 0.00 2.44
1064 1152 7.970614 AGAAGAGCAGAAAAAGTACAACAAAAG 59.029 33.333 0.00 0.00 0.00 2.27
1065 1153 7.391148 AGAGCAGAAAAAGTACAACAAAAGA 57.609 32.000 0.00 0.00 0.00 2.52
1067 1155 6.919721 AGCAGAAAAAGTACAACAAAAGACA 58.080 32.000 0.00 0.00 0.00 3.41
1068 1156 6.806739 AGCAGAAAAAGTACAACAAAAGACAC 59.193 34.615 0.00 0.00 0.00 3.67
1069 1157 6.034577 GCAGAAAAAGTACAACAAAAGACACC 59.965 38.462 0.00 0.00 0.00 4.16
1070 1158 7.087639 CAGAAAAAGTACAACAAAAGACACCA 58.912 34.615 0.00 0.00 0.00 4.17
1071 1159 7.759433 CAGAAAAAGTACAACAAAAGACACCAT 59.241 33.333 0.00 0.00 0.00 3.55
1551 5498 4.554036 GGATCAGGAGGCGGTGGC 62.554 72.222 0.00 0.00 38.90 5.01
1778 5737 2.045561 TGGCGTTTCTGTTCTTGGAA 57.954 45.000 0.00 0.00 0.00 3.53
1795 5754 3.410508 TGGAATTTTGCTTTGGATTGGC 58.589 40.909 0.00 0.00 0.00 4.52
1796 5755 3.181447 TGGAATTTTGCTTTGGATTGGCA 60.181 39.130 0.00 0.00 0.00 4.92
1821 5780 2.953466 TTTAACCGATCGACTGGAGG 57.047 50.000 18.66 0.00 0.00 4.30
1913 5872 8.971321 CACTTCAGAACCTCAATTTGTAAAATG 58.029 33.333 0.00 0.00 0.00 2.32
1935 5894 4.022155 TGCTGCAATGCAATCTGTTTCTAA 60.022 37.500 9.92 0.00 40.29 2.10
1966 5925 2.223641 ACAAACTCTCAGTCGTTGCGTA 60.224 45.455 0.00 0.00 0.00 4.42
1982 5942 1.910819 GCGTAAATTGATGCAACACGG 59.089 47.619 1.76 0.00 31.61 4.94
1984 5944 3.160545 CGTAAATTGATGCAACACGGTC 58.839 45.455 0.00 0.00 0.00 4.79
2007 5967 5.773176 TCTGAAAGAAGATAAACCCCAAACC 59.227 40.000 0.00 0.00 42.31 3.27
2032 5992 3.551485 TGCATCGATTGATACAACACGAG 59.449 43.478 0.00 0.00 32.18 4.18
2034 5994 3.503827 TCGATTGATACAACACGAGCT 57.496 42.857 0.00 0.00 0.00 4.09
2035 5995 4.625972 TCGATTGATACAACACGAGCTA 57.374 40.909 0.00 0.00 0.00 3.32
2036 5996 4.348656 TCGATTGATACAACACGAGCTAC 58.651 43.478 0.00 0.00 0.00 3.58
2037 5997 6.287289 ATCGATTGATACAACACGAGCTACG 61.287 44.000 15.55 0.00 39.59 3.51
2093 6058 9.784680 CATTGACAGTATATACCGGATAACTAC 57.215 37.037 9.46 3.11 0.00 2.73
2095 6060 9.578576 TTGACAGTATATACCGGATAACTACTT 57.421 33.333 9.46 0.43 0.00 2.24
2098 6073 9.171877 ACAGTATATACCGGATAACTACTTAGC 57.828 37.037 9.46 0.00 0.00 3.09
2180 6163 0.321298 TGAGTTTTAGGAGCCGCCAC 60.321 55.000 0.00 0.00 40.02 5.01
2223 6207 6.457392 CGTGATCTGATTCTAAACAACATGGG 60.457 42.308 0.00 0.00 0.00 4.00
2250 6234 2.584835 AATGACTTGCAGCCTAACCA 57.415 45.000 0.00 0.00 0.00 3.67
2261 6245 1.598701 GCCTAACCAAAGCAGCTGGG 61.599 60.000 17.12 10.61 38.36 4.45
2262 6246 0.038166 CCTAACCAAAGCAGCTGGGA 59.962 55.000 17.12 0.00 38.36 4.37
2268 6252 1.321474 CAAAGCAGCTGGGAGTTCAA 58.679 50.000 17.12 0.00 0.00 2.69
2292 6276 7.164230 AGATTTCACAACTGGTTAACACAAA 57.836 32.000 8.10 0.00 0.00 2.83
2293 6277 7.033185 AGATTTCACAACTGGTTAACACAAAC 58.967 34.615 8.10 0.00 0.00 2.93
2295 6279 5.707242 TCACAACTGGTTAACACAAACAA 57.293 34.783 8.10 0.00 0.00 2.83
2296 6280 6.085555 TCACAACTGGTTAACACAAACAAA 57.914 33.333 8.10 0.00 0.00 2.83
2297 6281 6.513180 TCACAACTGGTTAACACAAACAAAA 58.487 32.000 8.10 0.00 0.00 2.44
2298 6282 6.984474 TCACAACTGGTTAACACAAACAAAAA 59.016 30.769 8.10 0.00 0.00 1.94
2299 6283 7.657761 TCACAACTGGTTAACACAAACAAAAAT 59.342 29.630 8.10 0.00 0.00 1.82
2300 6284 8.286097 CACAACTGGTTAACACAAACAAAAATT 58.714 29.630 8.10 0.00 0.00 1.82
2301 6285 8.499967 ACAACTGGTTAACACAAACAAAAATTC 58.500 29.630 8.10 0.00 0.00 2.17
2302 6286 8.499162 CAACTGGTTAACACAAACAAAAATTCA 58.501 29.630 8.10 0.00 0.00 2.57
2303 6287 8.785329 ACTGGTTAACACAAACAAAAATTCAT 57.215 26.923 8.10 0.00 0.00 2.57
2304 6288 9.877178 ACTGGTTAACACAAACAAAAATTCATA 57.123 25.926 8.10 0.00 0.00 2.15
2420 6404 9.630098 AATCAATTAACATCACAACATGTTCTC 57.370 29.630 8.48 0.00 42.25 2.87
2431 6415 7.047891 TCACAACATGTTCTCTCAGTTTAGTT 58.952 34.615 8.48 0.00 0.00 2.24
2435 6419 8.826710 CAACATGTTCTCTCAGTTTAGTTTGTA 58.173 33.333 8.48 0.00 0.00 2.41
2446 6430 6.866770 TCAGTTTAGTTTGTATCAGGTCTTCG 59.133 38.462 0.00 0.00 0.00 3.79
2451 6435 9.932207 TTTAGTTTGTATCAGGTCTTCGATTTA 57.068 29.630 0.00 0.00 0.00 1.40
2452 6436 7.829378 AGTTTGTATCAGGTCTTCGATTTAC 57.171 36.000 0.00 0.00 0.00 2.01
2473 6457 2.681976 CGGTTTCTTGGCTGGATCATCT 60.682 50.000 0.00 0.00 0.00 2.90
2485 6469 4.070716 CTGGATCATCTATTTGGTCTGGC 58.929 47.826 0.00 0.00 0.00 4.85
2490 6474 6.772716 GGATCATCTATTTGGTCTGGCTTTTA 59.227 38.462 0.00 0.00 0.00 1.52
2501 6485 5.188948 TGGTCTGGCTTTTAGAACTATGCTA 59.811 40.000 0.00 0.00 33.06 3.49
2507 6491 6.374333 TGGCTTTTAGAACTATGCTAAACAGG 59.626 38.462 0.00 0.00 37.50 4.00
2512 6496 4.495422 AGAACTATGCTAAACAGGTGTCG 58.505 43.478 0.00 0.00 0.00 4.35
2513 6497 3.955650 ACTATGCTAAACAGGTGTCGT 57.044 42.857 0.00 0.00 0.00 4.34
2521 6505 4.689345 GCTAAACAGGTGTCGTAAGTTCAT 59.311 41.667 0.00 0.00 39.48 2.57
2523 6507 6.366877 GCTAAACAGGTGTCGTAAGTTCATAA 59.633 38.462 0.00 0.00 39.48 1.90
2524 6508 6.535274 AAACAGGTGTCGTAAGTTCATAAC 57.465 37.500 0.00 0.00 39.48 1.89
2528 6512 7.553334 ACAGGTGTCGTAAGTTCATAACATAT 58.447 34.615 0.00 0.00 39.48 1.78
2563 6547 2.364324 AGTGTCGACTACCAAGAAGCAA 59.636 45.455 17.92 0.00 0.00 3.91
2585 6569 5.592104 AAAAAGAAACCGAAACTGTGGAT 57.408 34.783 0.00 0.00 0.00 3.41
2586 6570 5.592104 AAAAGAAACCGAAACTGTGGATT 57.408 34.783 0.00 0.00 0.00 3.01
2587 6571 5.592104 AAAGAAACCGAAACTGTGGATTT 57.408 34.783 0.00 0.00 0.00 2.17
2588 6572 5.592104 AAGAAACCGAAACTGTGGATTTT 57.408 34.783 0.00 0.00 0.00 1.82
2589 6573 5.592104 AGAAACCGAAACTGTGGATTTTT 57.408 34.783 0.00 0.00 0.00 1.94
2610 6594 3.691049 TTTTGCGAGAAGAAACTGTGG 57.309 42.857 0.00 0.00 0.00 4.17
2611 6595 2.613026 TTGCGAGAAGAAACTGTGGA 57.387 45.000 0.00 0.00 0.00 4.02
2612 6596 2.613026 TGCGAGAAGAAACTGTGGAA 57.387 45.000 0.00 0.00 0.00 3.53
2613 6597 3.126001 TGCGAGAAGAAACTGTGGAAT 57.874 42.857 0.00 0.00 0.00 3.01
2614 6598 3.476552 TGCGAGAAGAAACTGTGGAATT 58.523 40.909 0.00 0.00 0.00 2.17
2615 6599 3.882888 TGCGAGAAGAAACTGTGGAATTT 59.117 39.130 0.00 0.00 0.00 1.82
2616 6600 4.338118 TGCGAGAAGAAACTGTGGAATTTT 59.662 37.500 0.00 0.00 0.00 1.82
2617 6601 5.163561 TGCGAGAAGAAACTGTGGAATTTTT 60.164 36.000 0.00 0.00 0.00 1.94
2618 6602 5.173854 GCGAGAAGAAACTGTGGAATTTTTG 59.826 40.000 0.00 0.00 0.00 2.44
2619 6603 6.494842 CGAGAAGAAACTGTGGAATTTTTGA 58.505 36.000 0.00 0.00 0.00 2.69
2620 6604 6.414987 CGAGAAGAAACTGTGGAATTTTTGAC 59.585 38.462 0.00 0.00 0.00 3.18
2621 6605 6.573434 AGAAGAAACTGTGGAATTTTTGACC 58.427 36.000 0.00 0.00 0.00 4.02
2622 6606 4.932146 AGAAACTGTGGAATTTTTGACCG 58.068 39.130 0.00 0.00 0.00 4.79
2623 6607 4.642885 AGAAACTGTGGAATTTTTGACCGA 59.357 37.500 0.00 0.00 0.00 4.69
2624 6608 4.993029 AACTGTGGAATTTTTGACCGAA 57.007 36.364 0.00 0.00 0.00 4.30
2625 6609 4.301637 ACTGTGGAATTTTTGACCGAAC 57.698 40.909 0.00 0.00 0.00 3.95
2626 6610 3.067601 ACTGTGGAATTTTTGACCGAACC 59.932 43.478 0.00 0.00 0.00 3.62
2627 6611 2.033550 TGTGGAATTTTTGACCGAACCG 59.966 45.455 0.00 0.00 0.00 4.44
2628 6612 1.001158 TGGAATTTTTGACCGAACCGC 60.001 47.619 0.00 0.00 0.00 5.68
2629 6613 1.268625 GGAATTTTTGACCGAACCGCT 59.731 47.619 0.00 0.00 0.00 5.52
2630 6614 2.485038 GGAATTTTTGACCGAACCGCTA 59.515 45.455 0.00 0.00 0.00 4.26
2631 6615 3.128068 GGAATTTTTGACCGAACCGCTAT 59.872 43.478 0.00 0.00 0.00 2.97
2632 6616 4.333372 GGAATTTTTGACCGAACCGCTATA 59.667 41.667 0.00 0.00 0.00 1.31
2633 6617 5.163733 GGAATTTTTGACCGAACCGCTATAA 60.164 40.000 0.00 0.00 0.00 0.98
2634 6618 4.666928 TTTTTGACCGAACCGCTATAAC 57.333 40.909 0.00 0.00 0.00 1.89
2635 6619 3.598019 TTTGACCGAACCGCTATAACT 57.402 42.857 0.00 0.00 0.00 2.24
2636 6620 4.717233 TTTGACCGAACCGCTATAACTA 57.283 40.909 0.00 0.00 0.00 2.24
2637 6621 4.924305 TTGACCGAACCGCTATAACTAT 57.076 40.909 0.00 0.00 0.00 2.12
2638 6622 4.494350 TGACCGAACCGCTATAACTATC 57.506 45.455 0.00 0.00 0.00 2.08
2639 6623 4.139786 TGACCGAACCGCTATAACTATCT 58.860 43.478 0.00 0.00 0.00 1.98
2640 6624 5.308014 TGACCGAACCGCTATAACTATCTA 58.692 41.667 0.00 0.00 0.00 1.98
2641 6625 5.180117 TGACCGAACCGCTATAACTATCTAC 59.820 44.000 0.00 0.00 0.00 2.59
2642 6626 4.457257 ACCGAACCGCTATAACTATCTACC 59.543 45.833 0.00 0.00 0.00 3.18
2643 6627 4.142513 CCGAACCGCTATAACTATCTACCC 60.143 50.000 0.00 0.00 0.00 3.69
2644 6628 4.142513 CGAACCGCTATAACTATCTACCCC 60.143 50.000 0.00 0.00 0.00 4.95
2645 6629 3.350833 ACCGCTATAACTATCTACCCCG 58.649 50.000 0.00 0.00 0.00 5.73
2646 6630 3.245052 ACCGCTATAACTATCTACCCCGT 60.245 47.826 0.00 0.00 0.00 5.28
2647 6631 3.760684 CCGCTATAACTATCTACCCCGTT 59.239 47.826 0.00 0.00 0.00 4.44
2648 6632 4.219288 CCGCTATAACTATCTACCCCGTTT 59.781 45.833 0.00 0.00 0.00 3.60
2649 6633 5.397326 CGCTATAACTATCTACCCCGTTTC 58.603 45.833 0.00 0.00 0.00 2.78
2650 6634 5.048504 CGCTATAACTATCTACCCCGTTTCA 60.049 44.000 0.00 0.00 0.00 2.69
2651 6635 6.515531 CGCTATAACTATCTACCCCGTTTCAA 60.516 42.308 0.00 0.00 0.00 2.69
2652 6636 7.212274 GCTATAACTATCTACCCCGTTTCAAA 58.788 38.462 0.00 0.00 0.00 2.69
2653 6637 7.712205 GCTATAACTATCTACCCCGTTTCAAAA 59.288 37.037 0.00 0.00 0.00 2.44
2654 6638 9.774413 CTATAACTATCTACCCCGTTTCAAAAT 57.226 33.333 0.00 0.00 0.00 1.82
2656 6640 9.774413 ATAACTATCTACCCCGTTTCAAAATAG 57.226 33.333 0.00 0.00 0.00 1.73
2657 6641 7.191593 ACTATCTACCCCGTTTCAAAATAGT 57.808 36.000 0.00 0.00 0.00 2.12
2658 6642 7.627311 ACTATCTACCCCGTTTCAAAATAGTT 58.373 34.615 0.00 0.00 0.00 2.24
2659 6643 6.753107 ATCTACCCCGTTTCAAAATAGTTG 57.247 37.500 0.00 0.00 0.00 3.16
2660 6644 5.867330 TCTACCCCGTTTCAAAATAGTTGA 58.133 37.500 0.00 0.00 0.00 3.18
2661 6645 6.297582 TCTACCCCGTTTCAAAATAGTTGAA 58.702 36.000 0.00 0.00 36.71 2.69
2662 6646 5.447624 ACCCCGTTTCAAAATAGTTGAAG 57.552 39.130 2.15 0.00 39.30 3.02
2663 6647 4.891168 ACCCCGTTTCAAAATAGTTGAAGT 59.109 37.500 2.15 0.00 39.30 3.01
2664 6648 5.009310 ACCCCGTTTCAAAATAGTTGAAGTC 59.991 40.000 2.15 0.70 39.30 3.01
2665 6649 5.458015 CCCGTTTCAAAATAGTTGAAGTCC 58.542 41.667 2.15 0.00 39.30 3.85
2666 6650 5.240844 CCCGTTTCAAAATAGTTGAAGTCCT 59.759 40.000 2.15 0.00 39.30 3.85
2667 6651 6.428771 CCCGTTTCAAAATAGTTGAAGTCCTA 59.571 38.462 2.15 0.00 39.30 2.94
2668 6652 7.360946 CCCGTTTCAAAATAGTTGAAGTCCTAG 60.361 40.741 2.15 0.00 39.30 3.02
2669 6653 7.386848 CCGTTTCAAAATAGTTGAAGTCCTAGA 59.613 37.037 0.00 0.00 39.30 2.43
2670 6654 8.770828 CGTTTCAAAATAGTTGAAGTCCTAGAA 58.229 33.333 0.00 0.00 39.30 2.10
2678 6662 9.807921 AATAGTTGAAGTCCTAGAATTTTTCCA 57.192 29.630 0.00 0.00 0.00 3.53
2679 6663 9.807921 ATAGTTGAAGTCCTAGAATTTTTCCAA 57.192 29.630 0.00 0.00 0.00 3.53
2680 6664 8.533569 AGTTGAAGTCCTAGAATTTTTCCAAA 57.466 30.769 0.00 0.00 0.00 3.28
2681 6665 9.147732 AGTTGAAGTCCTAGAATTTTTCCAAAT 57.852 29.630 0.00 0.00 33.72 2.32
2682 6666 9.411801 GTTGAAGTCCTAGAATTTTTCCAAATC 57.588 33.333 0.00 0.00 30.80 2.17
2683 6667 8.704849 TGAAGTCCTAGAATTTTTCCAAATCA 57.295 30.769 0.00 0.00 30.80 2.57
2684 6668 9.312904 TGAAGTCCTAGAATTTTTCCAAATCAT 57.687 29.630 0.00 0.00 30.80 2.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.039722 ACCAGAAATTATTCCCCTACAAGAA 57.960 36.000 0.00 0.00 36.12 2.52
1 2 6.652205 ACCAGAAATTATTCCCCTACAAGA 57.348 37.500 0.00 0.00 36.12 3.02
2 3 6.889722 TGAACCAGAAATTATTCCCCTACAAG 59.110 38.462 0.00 0.00 36.12 3.16
3 4 6.795590 TGAACCAGAAATTATTCCCCTACAA 58.204 36.000 0.00 0.00 36.12 2.41
4 5 6.395780 TGAACCAGAAATTATTCCCCTACA 57.604 37.500 0.00 0.00 36.12 2.74
5 6 6.183360 CGTTGAACCAGAAATTATTCCCCTAC 60.183 42.308 0.00 0.00 36.12 3.18
6 7 5.883673 CGTTGAACCAGAAATTATTCCCCTA 59.116 40.000 0.00 0.00 36.12 3.53
7 8 4.705023 CGTTGAACCAGAAATTATTCCCCT 59.295 41.667 0.00 0.00 36.12 4.79
8 9 4.461431 ACGTTGAACCAGAAATTATTCCCC 59.539 41.667 0.00 0.00 36.12 4.81
9 10 5.637809 GACGTTGAACCAGAAATTATTCCC 58.362 41.667 0.00 0.00 36.12 3.97
10 11 5.321516 CGACGTTGAACCAGAAATTATTCC 58.678 41.667 0.00 0.00 36.12 3.01
11 12 5.106830 ACCGACGTTGAACCAGAAATTATTC 60.107 40.000 3.74 0.00 35.70 1.75
12 13 4.758165 ACCGACGTTGAACCAGAAATTATT 59.242 37.500 3.74 0.00 0.00 1.40
13 14 4.320870 ACCGACGTTGAACCAGAAATTAT 58.679 39.130 3.74 0.00 0.00 1.28
14 15 3.731089 ACCGACGTTGAACCAGAAATTA 58.269 40.909 3.74 0.00 0.00 1.40
15 16 2.546789 GACCGACGTTGAACCAGAAATT 59.453 45.455 3.74 0.00 0.00 1.82
16 17 2.140717 GACCGACGTTGAACCAGAAAT 58.859 47.619 3.74 0.00 0.00 2.17
17 18 1.574134 GACCGACGTTGAACCAGAAA 58.426 50.000 3.74 0.00 0.00 2.52
18 19 0.249573 GGACCGACGTTGAACCAGAA 60.250 55.000 3.74 0.00 0.00 3.02
19 20 1.364901 GGACCGACGTTGAACCAGA 59.635 57.895 3.74 0.00 0.00 3.86
20 21 1.068417 TGGACCGACGTTGAACCAG 59.932 57.895 3.74 0.00 0.00 4.00
21 22 1.227321 GTGGACCGACGTTGAACCA 60.227 57.895 3.74 10.32 0.00 3.67
22 23 1.957695 GGTGGACCGACGTTGAACC 60.958 63.158 3.74 7.75 0.00 3.62
23 24 0.314935 TAGGTGGACCGACGTTGAAC 59.685 55.000 3.74 0.00 42.08 3.18
24 25 1.039068 TTAGGTGGACCGACGTTGAA 58.961 50.000 3.74 0.00 42.08 2.69
25 26 1.039068 TTTAGGTGGACCGACGTTGA 58.961 50.000 3.74 0.00 42.08 3.18
26 27 1.796459 CTTTTAGGTGGACCGACGTTG 59.204 52.381 0.00 0.00 42.08 4.10
27 28 1.270465 CCTTTTAGGTGGACCGACGTT 60.270 52.381 0.00 0.00 42.08 3.99
28 29 0.319405 CCTTTTAGGTGGACCGACGT 59.681 55.000 0.00 0.00 42.08 4.34
29 30 3.132863 CCTTTTAGGTGGACCGACG 57.867 57.895 0.00 0.00 42.08 5.12
40 41 6.072119 AGGTGATTCGCCTAAAAACCTTTTAG 60.072 38.462 17.19 10.60 43.18 1.85
41 42 5.771165 AGGTGATTCGCCTAAAAACCTTTTA 59.229 36.000 17.19 0.00 43.18 1.52
42 43 4.587262 AGGTGATTCGCCTAAAAACCTTTT 59.413 37.500 17.19 0.00 43.18 2.27
46 47 3.078837 TCAGGTGATTCGCCTAAAAACC 58.921 45.455 18.18 0.00 43.13 3.27
56 57 3.321968 TGGAGTGGATATCAGGTGATTCG 59.678 47.826 4.83 0.00 36.05 3.34
78 79 5.641155 ACTAAGTTCCAGCCAATTAAGGTT 58.359 37.500 0.00 0.00 0.00 3.50
79 80 5.254115 GACTAAGTTCCAGCCAATTAAGGT 58.746 41.667 0.00 0.00 0.00 3.50
81 82 4.640647 GGGACTAAGTTCCAGCCAATTAAG 59.359 45.833 0.00 0.00 37.40 1.85
82 83 4.569015 GGGGACTAAGTTCCAGCCAATTAA 60.569 45.833 0.00 0.00 37.40 1.40
83 84 3.053917 GGGGACTAAGTTCCAGCCAATTA 60.054 47.826 0.00 0.00 37.40 1.40
84 85 2.291605 GGGGACTAAGTTCCAGCCAATT 60.292 50.000 0.00 0.00 37.40 2.32
85 86 1.285078 GGGGACTAAGTTCCAGCCAAT 59.715 52.381 0.00 0.00 37.40 3.16
86 87 0.696501 GGGGACTAAGTTCCAGCCAA 59.303 55.000 0.00 0.00 37.40 4.52
87 88 0.474854 TGGGGACTAAGTTCCAGCCA 60.475 55.000 0.00 0.00 37.40 4.75
89 90 1.351350 ACTTGGGGACTAAGTTCCAGC 59.649 52.381 0.00 0.00 37.40 4.85
90 91 3.581332 TGTACTTGGGGACTAAGTTCCAG 59.419 47.826 3.39 0.00 39.06 3.86
91 92 3.589641 TGTACTTGGGGACTAAGTTCCA 58.410 45.455 3.39 0.00 39.06 3.53
92 93 4.838904 ATGTACTTGGGGACTAAGTTCC 57.161 45.455 3.39 0.00 39.06 3.62
93 94 7.520451 AAAAATGTACTTGGGGACTAAGTTC 57.480 36.000 3.39 0.00 39.06 3.01
114 115 3.005367 GTGGCGAAAAGATCTCCCAAAAA 59.995 43.478 0.00 0.00 31.47 1.94
118 119 0.690192 TGTGGCGAAAAGATCTCCCA 59.310 50.000 0.00 0.00 31.47 4.37
119 120 1.087501 GTGTGGCGAAAAGATCTCCC 58.912 55.000 0.00 0.00 31.47 4.30
142 145 9.713713 GGGTTATAAAAGTTTCAGCCAATTAAA 57.286 29.630 0.00 0.00 0.00 1.52
161 164 2.645297 TGAAAGTGCAGTGGGGGTTATA 59.355 45.455 0.00 0.00 0.00 0.98
167 170 3.573967 AGTTAATTGAAAGTGCAGTGGGG 59.426 43.478 0.00 0.00 0.00 4.96
211 215 4.377635 GCTATTTTCGCCGTTCAAAGTACA 60.378 41.667 0.00 0.00 0.00 2.90
212 216 4.086574 GCTATTTTCGCCGTTCAAAGTAC 58.913 43.478 0.00 0.00 0.00 2.73
213 217 3.181528 CGCTATTTTCGCCGTTCAAAGTA 60.182 43.478 0.00 0.00 0.00 2.24
224 228 3.102097 AGCTGCCGCTATTTTCGC 58.898 55.556 0.00 0.00 46.79 4.70
236 240 3.200593 CGCTGGATGTGGAGCTGC 61.201 66.667 0.00 0.00 32.70 5.25
255 261 1.653114 CTTGCTCTCGCTTCTTCTTCG 59.347 52.381 0.00 0.00 36.97 3.79
284 294 0.108520 GCGGGGTGATTTGACGACTA 60.109 55.000 0.00 0.00 0.00 2.59
285 295 1.375523 GCGGGGTGATTTGACGACT 60.376 57.895 0.00 0.00 0.00 4.18
410 421 1.135373 TCGACGCTCTGGAATGTTCTC 60.135 52.381 0.00 0.00 0.00 2.87
434 445 4.247380 GATCGAGCTGGGGCCTGG 62.247 72.222 0.84 0.00 39.73 4.45
435 446 4.247380 GGATCGAGCTGGGGCCTG 62.247 72.222 0.84 0.00 39.73 4.85
436 447 4.804420 TGGATCGAGCTGGGGCCT 62.804 66.667 0.84 0.00 39.73 5.19
437 448 4.247380 CTGGATCGAGCTGGGGCC 62.247 72.222 0.00 0.00 39.73 5.80
438 449 4.925861 GCTGGATCGAGCTGGGGC 62.926 72.222 21.18 0.00 35.95 5.80
481 517 3.332034 ACAAGTAATTCGAAACGGAGGG 58.668 45.455 0.00 0.00 0.00 4.30
482 518 4.243270 AGACAAGTAATTCGAAACGGAGG 58.757 43.478 0.00 0.00 0.00 4.30
483 519 5.389516 CCAAGACAAGTAATTCGAAACGGAG 60.390 44.000 0.00 0.00 0.00 4.63
484 520 4.449743 CCAAGACAAGTAATTCGAAACGGA 59.550 41.667 0.00 0.00 0.00 4.69
485 521 4.449743 TCCAAGACAAGTAATTCGAAACGG 59.550 41.667 0.00 0.00 0.00 4.44
486 522 5.585500 TCCAAGACAAGTAATTCGAAACG 57.415 39.130 0.00 0.00 0.00 3.60
489 525 9.667107 AGATAAATCCAAGACAAGTAATTCGAA 57.333 29.630 0.00 0.00 0.00 3.71
516 552 9.593134 GACAAGTAATTCAGAACAGATGTATCT 57.407 33.333 0.00 0.00 37.72 1.98
517 553 9.593134 AGACAAGTAATTCAGAACAGATGTATC 57.407 33.333 0.00 0.00 0.00 2.24
518 554 9.950496 AAGACAAGTAATTCAGAACAGATGTAT 57.050 29.630 0.00 0.00 0.00 2.29
519 555 9.208022 CAAGACAAGTAATTCAGAACAGATGTA 57.792 33.333 0.00 0.00 0.00 2.29
520 556 7.173907 CCAAGACAAGTAATTCAGAACAGATGT 59.826 37.037 0.00 0.00 0.00 3.06
521 557 7.388776 TCCAAGACAAGTAATTCAGAACAGATG 59.611 37.037 0.00 0.00 0.00 2.90
522 558 7.453393 TCCAAGACAAGTAATTCAGAACAGAT 58.547 34.615 0.00 0.00 0.00 2.90
523 559 6.826668 TCCAAGACAAGTAATTCAGAACAGA 58.173 36.000 0.00 0.00 0.00 3.41
524 560 7.678947 ATCCAAGACAAGTAATTCAGAACAG 57.321 36.000 0.00 0.00 0.00 3.16
525 561 8.352201 CAAATCCAAGACAAGTAATTCAGAACA 58.648 33.333 0.00 0.00 0.00 3.18
526 562 8.352942 ACAAATCCAAGACAAGTAATTCAGAAC 58.647 33.333 0.00 0.00 0.00 3.01
527 563 8.463930 ACAAATCCAAGACAAGTAATTCAGAA 57.536 30.769 0.00 0.00 0.00 3.02
528 564 7.939039 AGACAAATCCAAGACAAGTAATTCAGA 59.061 33.333 0.00 0.00 0.00 3.27
529 565 8.103948 AGACAAATCCAAGACAAGTAATTCAG 57.896 34.615 0.00 0.00 0.00 3.02
530 566 9.219603 CTAGACAAATCCAAGACAAGTAATTCA 57.780 33.333 0.00 0.00 0.00 2.57
531 567 9.436957 TCTAGACAAATCCAAGACAAGTAATTC 57.563 33.333 0.00 0.00 0.00 2.17
532 568 9.965902 ATCTAGACAAATCCAAGACAAGTAATT 57.034 29.630 0.00 0.00 0.00 1.40
534 570 9.871238 GTATCTAGACAAATCCAAGACAAGTAA 57.129 33.333 0.00 0.00 0.00 2.24
535 571 9.031537 TGTATCTAGACAAATCCAAGACAAGTA 57.968 33.333 0.00 0.00 0.00 2.24
536 572 7.907389 TGTATCTAGACAAATCCAAGACAAGT 58.093 34.615 0.00 0.00 0.00 3.16
537 573 8.253810 TCTGTATCTAGACAAATCCAAGACAAG 58.746 37.037 0.00 0.00 0.00 3.16
538 574 8.134202 TCTGTATCTAGACAAATCCAAGACAA 57.866 34.615 0.00 0.00 0.00 3.18
539 575 7.615757 TCTCTGTATCTAGACAAATCCAAGACA 59.384 37.037 0.00 0.00 0.00 3.41
540 576 8.001881 TCTCTGTATCTAGACAAATCCAAGAC 57.998 38.462 0.00 0.00 0.00 3.01
541 577 8.774546 ATCTCTGTATCTAGACAAATCCAAGA 57.225 34.615 0.00 0.00 0.00 3.02
572 608 9.201989 TGTCTAGATACATCCTCATTTTAGTGT 57.798 33.333 0.00 0.00 0.00 3.55
577 613 9.566432 GGATTTGTCTAGATACATCCTCATTTT 57.434 33.333 21.37 0.00 29.51 1.82
578 614 8.717717 TGGATTTGTCTAGATACATCCTCATTT 58.282 33.333 26.01 0.00 32.17 2.32
579 615 8.267620 TGGATTTGTCTAGATACATCCTCATT 57.732 34.615 26.01 0.00 32.17 2.57
580 616 7.862274 TGGATTTGTCTAGATACATCCTCAT 57.138 36.000 26.01 0.08 32.17 2.90
581 617 7.565029 TCTTGGATTTGTCTAGATACATCCTCA 59.435 37.037 26.01 16.22 32.17 3.86
582 618 7.870445 GTCTTGGATTTGTCTAGATACATCCTC 59.130 40.741 26.01 14.85 32.17 3.71
583 619 7.345653 TGTCTTGGATTTGTCTAGATACATCCT 59.654 37.037 26.01 0.33 32.17 3.24
584 620 7.500992 TGTCTTGGATTTGTCTAGATACATCC 58.499 38.462 21.69 21.69 31.74 3.51
585 621 8.948631 TTGTCTTGGATTTGTCTAGATACATC 57.051 34.615 7.00 7.00 0.00 3.06
586 622 8.543774 ACTTGTCTTGGATTTGTCTAGATACAT 58.456 33.333 0.00 0.00 0.00 2.29
587 623 7.907389 ACTTGTCTTGGATTTGTCTAGATACA 58.093 34.615 0.00 0.00 0.00 2.29
588 624 9.871238 TTACTTGTCTTGGATTTGTCTAGATAC 57.129 33.333 0.00 0.00 0.00 2.24
590 626 9.965902 AATTACTTGTCTTGGATTTGTCTAGAT 57.034 29.630 0.00 0.00 0.00 1.98
591 627 9.436957 GAATTACTTGTCTTGGATTTGTCTAGA 57.563 33.333 0.00 0.00 0.00 2.43
592 628 8.383619 CGAATTACTTGTCTTGGATTTGTCTAG 58.616 37.037 0.00 0.00 0.00 2.43
593 629 7.333423 CCGAATTACTTGTCTTGGATTTGTCTA 59.667 37.037 0.00 0.00 0.00 2.59
594 630 6.149474 CCGAATTACTTGTCTTGGATTTGTCT 59.851 38.462 0.00 0.00 0.00 3.41
595 631 6.148811 TCCGAATTACTTGTCTTGGATTTGTC 59.851 38.462 0.00 0.00 0.00 3.18
596 632 6.001460 TCCGAATTACTTGTCTTGGATTTGT 58.999 36.000 0.00 0.00 0.00 2.83
597 633 6.494893 TCCGAATTACTTGTCTTGGATTTG 57.505 37.500 0.00 0.00 0.00 2.32
598 634 6.348213 CGTTCCGAATTACTTGTCTTGGATTT 60.348 38.462 0.00 0.00 0.00 2.17
599 635 5.121768 CGTTCCGAATTACTTGTCTTGGATT 59.878 40.000 0.00 0.00 0.00 3.01
600 636 4.630069 CGTTCCGAATTACTTGTCTTGGAT 59.370 41.667 0.00 0.00 0.00 3.41
601 637 3.991773 CGTTCCGAATTACTTGTCTTGGA 59.008 43.478 0.00 0.00 0.00 3.53
602 638 3.124636 CCGTTCCGAATTACTTGTCTTGG 59.875 47.826 0.00 0.00 0.00 3.61
603 639 3.991773 TCCGTTCCGAATTACTTGTCTTG 59.008 43.478 0.00 0.00 0.00 3.02
604 640 4.243270 CTCCGTTCCGAATTACTTGTCTT 58.757 43.478 0.00 0.00 0.00 3.01
605 641 3.368116 CCTCCGTTCCGAATTACTTGTCT 60.368 47.826 0.00 0.00 0.00 3.41
606 642 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
607 643 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
608 644 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
609 645 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
610 646 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
611 647 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
612 648 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
613 649 1.755380 CTACTCCCTCCGTTCCGAATT 59.245 52.381 0.00 0.00 0.00 2.17
614 650 1.341778 ACTACTCCCTCCGTTCCGAAT 60.342 52.381 0.00 0.00 0.00 3.34
615 651 0.038744 ACTACTCCCTCCGTTCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
616 652 0.911769 TACTACTCCCTCCGTTCCGA 59.088 55.000 0.00 0.00 0.00 4.55
617 653 1.020437 GTACTACTCCCTCCGTTCCG 58.980 60.000 0.00 0.00 0.00 4.30
618 654 2.022934 CAGTACTACTCCCTCCGTTCC 58.977 57.143 0.00 0.00 0.00 3.62
619 655 2.996631 TCAGTACTACTCCCTCCGTTC 58.003 52.381 0.00 0.00 0.00 3.95
620 656 3.666345 ATCAGTACTACTCCCTCCGTT 57.334 47.619 0.00 0.00 0.00 4.44
621 657 4.997545 ATATCAGTACTACTCCCTCCGT 57.002 45.455 0.00 0.00 0.00 4.69
622 658 5.768662 TGAAATATCAGTACTACTCCCTCCG 59.231 44.000 0.00 0.00 0.00 4.63
623 659 7.784470 ATGAAATATCAGTACTACTCCCTCC 57.216 40.000 0.00 0.00 39.39 4.30
624 660 8.308207 GGAATGAAATATCAGTACTACTCCCTC 58.692 40.741 0.00 0.00 39.39 4.30
625 661 7.039644 CGGAATGAAATATCAGTACTACTCCCT 60.040 40.741 0.00 0.00 39.39 4.20
626 662 7.039923 TCGGAATGAAATATCAGTACTACTCCC 60.040 40.741 0.00 0.00 39.39 4.30
627 663 7.883217 TCGGAATGAAATATCAGTACTACTCC 58.117 38.462 0.00 0.00 39.39 3.85
628 664 9.915629 AATCGGAATGAAATATCAGTACTACTC 57.084 33.333 0.00 0.00 39.39 2.59
657 693 2.030401 CGGATTCGGCGGTTGTTGA 61.030 57.895 7.21 0.00 0.00 3.18
776 813 2.788407 GCGATCGGATATACTCGAGCAC 60.788 54.545 18.30 0.00 41.16 4.40
777 814 1.397343 GCGATCGGATATACTCGAGCA 59.603 52.381 18.30 0.00 41.16 4.26
778 815 1.666700 AGCGATCGGATATACTCGAGC 59.333 52.381 18.30 5.15 38.83 5.03
797 834 2.436646 GGATGGGTGTCACGCCAG 60.437 66.667 16.64 0.00 35.42 4.85
799 836 2.746277 GTGGATGGGTGTCACGCC 60.746 66.667 16.64 0.00 0.00 5.68
808 845 2.509336 GCTCACGACGTGGATGGG 60.509 66.667 26.55 13.05 33.87 4.00
839 876 3.903783 TGGCTAACCAATCGCTGC 58.096 55.556 0.00 0.00 45.37 5.25
1069 1157 2.740055 GCCGCTCCCATCGCTATG 60.740 66.667 0.00 0.00 0.00 2.23
1070 1158 4.363990 CGCCGCTCCCATCGCTAT 62.364 66.667 0.00 0.00 0.00 2.97
1501 1619 2.815211 CGCCACACCCACTGATCG 60.815 66.667 0.00 0.00 0.00 3.69
1696 5653 5.400066 ACAATGCCCAACAATTAACCTAC 57.600 39.130 0.00 0.00 0.00 3.18
1778 5737 3.488778 TGTGCCAATCCAAAGCAAAAT 57.511 38.095 0.00 0.00 38.45 1.82
1821 5780 3.262420 AGTGCATACGAGATCCACAAAC 58.738 45.455 0.00 0.00 0.00 2.93
1913 5872 2.955614 AGAAACAGATTGCATTGCAGC 58.044 42.857 11.76 8.31 40.61 5.25
1935 5894 6.371825 ACGACTGAGAGTTTGTCTTTCTTTTT 59.628 34.615 0.00 0.00 34.71 1.94
1966 5925 2.884012 TCAGACCGTGTTGCATCAATTT 59.116 40.909 0.00 0.00 0.00 1.82
1982 5942 6.294564 GGTTTGGGGTTTATCTTCTTTCAGAC 60.295 42.308 0.00 0.00 0.00 3.51
1984 5944 5.335661 CGGTTTGGGGTTTATCTTCTTTCAG 60.336 44.000 0.00 0.00 0.00 3.02
2000 5960 0.525761 AATCGATGCAACGGTTTGGG 59.474 50.000 16.74 0.00 32.55 4.12
2059 6019 8.889717 CCGGTATATACTGTCAATGTTCTTTTT 58.110 33.333 18.36 0.00 0.00 1.94
2064 6029 9.136952 GTTATCCGGTATATACTGTCAATGTTC 57.863 37.037 18.36 0.00 0.00 3.18
2130 6113 4.717279 AGGCAGTAGTGACCCTTAAAAA 57.283 40.909 0.00 0.00 27.74 1.94
2131 6114 4.717279 AAGGCAGTAGTGACCCTTAAAA 57.283 40.909 0.00 0.00 35.99 1.52
2132 6115 4.842380 AGTAAGGCAGTAGTGACCCTTAAA 59.158 41.667 14.72 0.00 40.51 1.52
2133 6116 4.422984 AGTAAGGCAGTAGTGACCCTTAA 58.577 43.478 14.72 2.22 40.51 1.85
2134 6117 4.057063 AGTAAGGCAGTAGTGACCCTTA 57.943 45.455 10.88 10.88 38.54 2.69
2135 6118 2.903926 AGTAAGGCAGTAGTGACCCTT 58.096 47.619 12.46 12.46 40.56 3.95
2136 6119 2.567615 CAAGTAAGGCAGTAGTGACCCT 59.432 50.000 0.00 0.00 27.74 4.34
2137 6120 2.354805 CCAAGTAAGGCAGTAGTGACCC 60.355 54.545 0.00 0.00 27.74 4.46
2138 6121 2.354805 CCCAAGTAAGGCAGTAGTGACC 60.355 54.545 0.00 1.31 27.74 4.02
2139 6122 2.302157 ACCCAAGTAAGGCAGTAGTGAC 59.698 50.000 0.42 0.00 0.00 3.67
2140 6123 2.616524 ACCCAAGTAAGGCAGTAGTGA 58.383 47.619 0.42 0.00 0.00 3.41
2141 6124 3.074412 CAACCCAAGTAAGGCAGTAGTG 58.926 50.000 0.00 0.00 0.00 2.74
2142 6125 2.976882 TCAACCCAAGTAAGGCAGTAGT 59.023 45.455 0.00 0.00 0.00 2.73
2143 6126 3.008049 ACTCAACCCAAGTAAGGCAGTAG 59.992 47.826 0.00 0.00 0.00 2.57
2144 6127 2.976882 ACTCAACCCAAGTAAGGCAGTA 59.023 45.455 0.00 0.00 0.00 2.74
2145 6128 1.774856 ACTCAACCCAAGTAAGGCAGT 59.225 47.619 0.00 0.00 0.00 4.40
2146 6129 2.568623 ACTCAACCCAAGTAAGGCAG 57.431 50.000 0.00 0.00 0.00 4.85
2147 6130 3.306472 AAACTCAACCCAAGTAAGGCA 57.694 42.857 0.00 0.00 0.00 4.75
2148 6131 4.217767 CCTAAAACTCAACCCAAGTAAGGC 59.782 45.833 0.00 0.00 0.00 4.35
2149 6132 5.627135 TCCTAAAACTCAACCCAAGTAAGG 58.373 41.667 0.00 0.00 0.00 2.69
2180 6163 4.494484 TCACGGATGATGGCGAATATAAG 58.506 43.478 0.00 0.00 0.00 1.73
2232 6216 2.584835 TTGGTTAGGCTGCAAGTCAT 57.415 45.000 0.50 0.00 44.82 3.06
2242 6226 1.598701 CCCAGCTGCTTTGGTTAGGC 61.599 60.000 8.66 0.00 33.73 3.93
2250 6234 1.143684 TCTTGAACTCCCAGCTGCTTT 59.856 47.619 8.66 0.00 0.00 3.51
2261 6245 5.757850 ACCAGTTGTGAAATCTTGAACTC 57.242 39.130 0.00 0.00 0.00 3.01
2262 6246 7.122055 TGTTAACCAGTTGTGAAATCTTGAACT 59.878 33.333 2.48 0.00 0.00 3.01
2268 6252 6.767524 TTGTGTTAACCAGTTGTGAAATCT 57.232 33.333 2.48 0.00 0.00 2.40
2292 6276 9.649024 CGCAAAGAACAAATTATGAATTTTTGT 57.351 25.926 0.38 0.38 43.41 2.83
2293 6277 9.861138 TCGCAAAGAACAAATTATGAATTTTTG 57.139 25.926 0.00 0.00 38.97 2.44
2306 6290 9.307121 TGATTTTTCTAATTCGCAAAGAACAAA 57.693 25.926 0.00 0.00 42.39 2.83
2309 6293 9.128107 TGATGATTTTTCTAATTCGCAAAGAAC 57.872 29.630 0.00 0.00 42.39 3.01
2412 6396 9.208022 TGATACAAACTAAACTGAGAGAACATG 57.792 33.333 0.00 0.00 0.00 3.21
2418 6402 7.607250 AGACCTGATACAAACTAAACTGAGAG 58.393 38.462 0.00 0.00 0.00 3.20
2419 6403 7.540474 AGACCTGATACAAACTAAACTGAGA 57.460 36.000 0.00 0.00 0.00 3.27
2420 6404 7.062371 CGAAGACCTGATACAAACTAAACTGAG 59.938 40.741 0.00 0.00 0.00 3.35
2431 6415 5.105635 ACCGTAAATCGAAGACCTGATACAA 60.106 40.000 0.00 0.00 42.51 2.41
2435 6419 4.467198 AACCGTAAATCGAAGACCTGAT 57.533 40.909 0.00 0.00 42.51 2.90
2446 6430 3.078837 TCCAGCCAAGAAACCGTAAATC 58.921 45.455 0.00 0.00 0.00 2.17
2451 6435 0.400213 TGATCCAGCCAAGAAACCGT 59.600 50.000 0.00 0.00 0.00 4.83
2452 6436 1.672881 GATGATCCAGCCAAGAAACCG 59.327 52.381 0.00 0.00 0.00 4.44
2473 6457 7.067008 GCATAGTTCTAAAAGCCAGACCAAATA 59.933 37.037 0.00 0.00 0.00 1.40
2485 6469 8.324163 ACACCTGTTTAGCATAGTTCTAAAAG 57.676 34.615 0.00 0.00 37.64 2.27
2490 6474 4.021368 ACGACACCTGTTTAGCATAGTTCT 60.021 41.667 0.00 0.00 0.00 3.01
2501 6485 6.050432 TGTTATGAACTTACGACACCTGTTT 58.950 36.000 0.00 0.00 0.00 2.83
2507 6491 8.630278 ACTCATATGTTATGAACTTACGACAC 57.370 34.615 1.90 0.00 0.00 3.67
2521 6505 9.489084 GACACTTGGCAATATACTCATATGTTA 57.511 33.333 0.00 0.00 0.00 2.41
2523 6507 6.646653 CGACACTTGGCAATATACTCATATGT 59.353 38.462 0.00 0.00 0.00 2.29
2524 6508 6.868339 TCGACACTTGGCAATATACTCATATG 59.132 38.462 0.00 0.00 0.00 1.78
2528 6512 4.159693 AGTCGACACTTGGCAATATACTCA 59.840 41.667 19.50 0.00 0.00 3.41
2534 6518 2.563620 TGGTAGTCGACACTTGGCAATA 59.436 45.455 19.50 0.00 33.62 1.90
2563 6547 5.592104 ATCCACAGTTTCGGTTTCTTTTT 57.408 34.783 0.00 0.00 0.00 1.94
2589 6573 3.692101 TCCACAGTTTCTTCTCGCAAAAA 59.308 39.130 0.00 0.00 0.00 1.94
2590 6574 3.275143 TCCACAGTTTCTTCTCGCAAAA 58.725 40.909 0.00 0.00 0.00 2.44
2591 6575 2.912771 TCCACAGTTTCTTCTCGCAAA 58.087 42.857 0.00 0.00 0.00 3.68
2592 6576 2.613026 TCCACAGTTTCTTCTCGCAA 57.387 45.000 0.00 0.00 0.00 4.85
2593 6577 2.613026 TTCCACAGTTTCTTCTCGCA 57.387 45.000 0.00 0.00 0.00 5.10
2594 6578 4.489679 AAATTCCACAGTTTCTTCTCGC 57.510 40.909 0.00 0.00 0.00 5.03
2595 6579 6.414987 GTCAAAAATTCCACAGTTTCTTCTCG 59.585 38.462 0.00 0.00 0.00 4.04
2596 6580 6.697455 GGTCAAAAATTCCACAGTTTCTTCTC 59.303 38.462 0.00 0.00 0.00 2.87
2597 6581 6.573434 GGTCAAAAATTCCACAGTTTCTTCT 58.427 36.000 0.00 0.00 0.00 2.85
2598 6582 5.458779 CGGTCAAAAATTCCACAGTTTCTTC 59.541 40.000 0.00 0.00 0.00 2.87
2599 6583 5.126384 TCGGTCAAAAATTCCACAGTTTCTT 59.874 36.000 0.00 0.00 0.00 2.52
2600 6584 4.642885 TCGGTCAAAAATTCCACAGTTTCT 59.357 37.500 0.00 0.00 0.00 2.52
2601 6585 4.927422 TCGGTCAAAAATTCCACAGTTTC 58.073 39.130 0.00 0.00 0.00 2.78
2602 6586 4.993029 TCGGTCAAAAATTCCACAGTTT 57.007 36.364 0.00 0.00 0.00 2.66
2603 6587 4.440940 GGTTCGGTCAAAAATTCCACAGTT 60.441 41.667 0.00 0.00 0.00 3.16
2604 6588 3.067601 GGTTCGGTCAAAAATTCCACAGT 59.932 43.478 0.00 0.00 0.00 3.55
2605 6589 3.638484 GGTTCGGTCAAAAATTCCACAG 58.362 45.455 0.00 0.00 0.00 3.66
2606 6590 2.033550 CGGTTCGGTCAAAAATTCCACA 59.966 45.455 0.00 0.00 0.00 4.17
2607 6591 2.657184 CGGTTCGGTCAAAAATTCCAC 58.343 47.619 0.00 0.00 0.00 4.02
2608 6592 1.001158 GCGGTTCGGTCAAAAATTCCA 60.001 47.619 0.00 0.00 0.00 3.53
2609 6593 1.268625 AGCGGTTCGGTCAAAAATTCC 59.731 47.619 0.00 0.00 29.31 3.01
2610 6594 2.699251 AGCGGTTCGGTCAAAAATTC 57.301 45.000 0.00 0.00 29.31 2.17
2611 6595 5.413523 AGTTATAGCGGTTCGGTCAAAAATT 59.586 36.000 0.00 0.00 38.83 1.82
2612 6596 4.939439 AGTTATAGCGGTTCGGTCAAAAAT 59.061 37.500 0.00 0.00 38.83 1.82
2613 6597 4.317488 AGTTATAGCGGTTCGGTCAAAAA 58.683 39.130 0.00 0.00 38.83 1.94
2614 6598 3.929094 AGTTATAGCGGTTCGGTCAAAA 58.071 40.909 0.00 0.00 38.83 2.44
2615 6599 3.598019 AGTTATAGCGGTTCGGTCAAA 57.402 42.857 0.00 0.00 38.83 2.69
2616 6600 4.581824 AGATAGTTATAGCGGTTCGGTCAA 59.418 41.667 0.00 0.00 38.83 3.18
2617 6601 4.139786 AGATAGTTATAGCGGTTCGGTCA 58.860 43.478 0.00 0.00 38.83 4.02
2618 6602 4.762956 AGATAGTTATAGCGGTTCGGTC 57.237 45.455 0.00 0.00 38.83 4.79
2619 6603 4.457257 GGTAGATAGTTATAGCGGTTCGGT 59.543 45.833 0.00 0.00 41.50 4.69
2620 6604 4.142513 GGGTAGATAGTTATAGCGGTTCGG 60.143 50.000 0.00 0.00 0.00 4.30
2621 6605 4.142513 GGGGTAGATAGTTATAGCGGTTCG 60.143 50.000 0.00 0.00 0.00 3.95
2622 6606 4.142513 CGGGGTAGATAGTTATAGCGGTTC 60.143 50.000 0.00 0.00 0.00 3.62
2623 6607 3.760684 CGGGGTAGATAGTTATAGCGGTT 59.239 47.826 0.00 0.00 0.00 4.44
2624 6608 3.245052 ACGGGGTAGATAGTTATAGCGGT 60.245 47.826 0.00 0.00 0.00 5.68
2625 6609 3.350833 ACGGGGTAGATAGTTATAGCGG 58.649 50.000 0.00 0.00 0.00 5.52
2626 6610 5.048504 TGAAACGGGGTAGATAGTTATAGCG 60.049 44.000 0.00 0.00 0.00 4.26
2627 6611 6.336842 TGAAACGGGGTAGATAGTTATAGC 57.663 41.667 0.00 0.00 0.00 2.97
2628 6612 9.774413 ATTTTGAAACGGGGTAGATAGTTATAG 57.226 33.333 0.00 0.00 0.00 1.31
2630 6614 9.774413 CTATTTTGAAACGGGGTAGATAGTTAT 57.226 33.333 0.00 0.00 0.00 1.89
2631 6615 8.761689 ACTATTTTGAAACGGGGTAGATAGTTA 58.238 33.333 0.00 0.00 0.00 2.24
2632 6616 7.627311 ACTATTTTGAAACGGGGTAGATAGTT 58.373 34.615 0.00 0.00 0.00 2.24
2633 6617 7.191593 ACTATTTTGAAACGGGGTAGATAGT 57.808 36.000 0.00 0.00 0.00 2.12
2634 6618 7.767198 TCAACTATTTTGAAACGGGGTAGATAG 59.233 37.037 0.00 0.00 0.00 2.08
2635 6619 7.622713 TCAACTATTTTGAAACGGGGTAGATA 58.377 34.615 0.00 0.00 0.00 1.98
2636 6620 6.478129 TCAACTATTTTGAAACGGGGTAGAT 58.522 36.000 0.00 0.00 0.00 1.98
2637 6621 5.867330 TCAACTATTTTGAAACGGGGTAGA 58.133 37.500 0.00 0.00 0.00 2.59
2638 6622 6.206048 ACTTCAACTATTTTGAAACGGGGTAG 59.794 38.462 1.42 0.00 37.89 3.18
2639 6623 6.063404 ACTTCAACTATTTTGAAACGGGGTA 58.937 36.000 1.42 0.00 37.89 3.69
2640 6624 4.891168 ACTTCAACTATTTTGAAACGGGGT 59.109 37.500 1.42 0.00 37.89 4.95
2641 6625 5.447624 ACTTCAACTATTTTGAAACGGGG 57.552 39.130 1.42 0.00 37.89 5.73
2642 6626 5.240844 AGGACTTCAACTATTTTGAAACGGG 59.759 40.000 1.42 0.00 37.89 5.28
2643 6627 6.313744 AGGACTTCAACTATTTTGAAACGG 57.686 37.500 1.42 0.00 37.89 4.44
2644 6628 8.306680 TCTAGGACTTCAACTATTTTGAAACG 57.693 34.615 1.42 0.00 37.89 3.60
2652 6636 9.807921 TGGAAAAATTCTAGGACTTCAACTATT 57.192 29.630 0.00 0.00 0.00 1.73
2653 6637 9.807921 TTGGAAAAATTCTAGGACTTCAACTAT 57.192 29.630 0.00 0.00 0.00 2.12
2654 6638 9.635404 TTTGGAAAAATTCTAGGACTTCAACTA 57.365 29.630 0.00 0.00 0.00 2.24
2655 6639 8.533569 TTTGGAAAAATTCTAGGACTTCAACT 57.466 30.769 0.00 0.00 0.00 3.16
2656 6640 9.411801 GATTTGGAAAAATTCTAGGACTTCAAC 57.588 33.333 0.00 0.00 0.00 3.18
2657 6641 9.142014 TGATTTGGAAAAATTCTAGGACTTCAA 57.858 29.630 0.00 0.00 0.00 2.69
2658 6642 8.704849 TGATTTGGAAAAATTCTAGGACTTCA 57.295 30.769 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.