Multiple sequence alignment - TraesCS5A01G475000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G475000 chr5A 100.000 1752 0 0 510 2261 650476180 650474429 0.000000e+00 3236.0
1 TraesCS5A01G475000 chr5A 100.000 293 0 0 1 293 650476689 650476397 1.980000e-150 542.0
2 TraesCS5A01G475000 chr5A 91.468 293 16 3 1877 2161 650467404 650467113 5.850000e-106 394.0
3 TraesCS5A01G475000 chr5A 82.353 374 36 16 1392 1741 650469378 650469011 4.720000e-77 298.0
4 TraesCS5A01G475000 chr5B 92.009 463 34 2 919 1378 658740062 658739600 0.000000e+00 647.0
5 TraesCS5A01G475000 chr5D 94.892 372 15 1 927 1298 522300284 522299917 1.510000e-161 579.0
6 TraesCS5A01G475000 chr5D 91.398 279 12 5 576 845 522300849 522300574 2.740000e-99 372.0
7 TraesCS5A01G475000 chr5D 92.982 57 4 0 1317 1373 522299919 522299863 1.440000e-12 84.2
8 TraesCS5A01G475000 chr6B 90.034 291 13 6 1 290 52185016 52185291 1.650000e-96 363.0
9 TraesCS5A01G475000 chr6B 96.262 107 2 2 1775 1880 314586716 314586821 8.300000e-40 174.0
10 TraesCS5A01G475000 chr7B 88.435 294 25 4 1877 2161 150550813 150550520 1.660000e-91 346.0
11 TraesCS5A01G475000 chr7B 82.734 417 41 13 1392 1784 150551203 150550794 2.150000e-90 342.0
12 TraesCS5A01G475000 chr7B 88.095 294 26 4 1877 2161 627639742 627639449 7.730000e-90 340.0
13 TraesCS5A01G475000 chr7B 82.075 424 41 17 1387 1784 627640137 627639723 1.670000e-86 329.0
14 TraesCS5A01G475000 chr7B 86.047 129 13 5 1927 2052 583030072 583030198 1.410000e-27 134.0
15 TraesCS5A01G475000 chr7B 90.476 42 3 1 1495 1535 717038925 717038966 1.000000e-03 54.7
16 TraesCS5A01G475000 chr2B 88.435 294 25 3 1877 2161 485162776 485163069 1.660000e-91 346.0
17 TraesCS5A01G475000 chr1B 88.435 294 25 4 1877 2161 218960625 218960332 1.660000e-91 346.0
18 TraesCS5A01G475000 chr1B 82.339 419 41 15 1390 1784 218961015 218960606 1.290000e-87 333.0
19 TraesCS5A01G475000 chr1B 100.000 95 0 0 1787 1881 671975478 671975572 2.310000e-40 176.0
20 TraesCS5A01G475000 chr4B 88.356 292 27 2 1877 2161 86686939 86687230 5.980000e-91 344.0
21 TraesCS5A01G475000 chr4A 88.356 292 27 2 1877 2161 497690548 497690257 5.980000e-91 344.0
22 TraesCS5A01G475000 chr4A 100.000 95 0 0 1787 1881 7590912 7590818 2.310000e-40 176.0
23 TraesCS5A01G475000 chr4A 100.000 95 0 0 1786 1880 729820942 729821036 2.310000e-40 176.0
24 TraesCS5A01G475000 chr3B 88.356 292 27 2 1877 2161 520462260 520462551 5.980000e-91 344.0
25 TraesCS5A01G475000 chr3B 100.000 94 0 0 1787 1880 250005067 250004974 8.300000e-40 174.0
26 TraesCS5A01G475000 chr3D 81.507 292 21 15 1393 1658 359079295 359079011 2.280000e-50 209.0
27 TraesCS5A01G475000 chr3D 89.362 47 4 1 1490 1535 418843937 418843891 8.720000e-05 58.4
28 TraesCS5A01G475000 chr7D 80.887 293 23 16 1392 1658 600491291 600491576 1.370000e-47 200.0
29 TraesCS5A01G475000 chrUn 100.000 97 0 0 1784 1880 314514599 314514695 1.780000e-41 180.0
30 TraesCS5A01G475000 chr6A 100.000 96 0 0 1785 1880 545146937 545147032 6.420000e-41 178.0
31 TraesCS5A01G475000 chr1A 100.000 95 0 0 1786 1880 47208062 47208156 2.310000e-40 176.0
32 TraesCS5A01G475000 chr7A 98.020 101 1 1 1780 1880 200209066 200208967 8.300000e-40 174.0
33 TraesCS5A01G475000 chr7A 100.000 50 0 0 510 559 10205583 10205632 2.390000e-15 93.5
34 TraesCS5A01G475000 chr1D 84.921 126 8 5 1535 1658 49573303 49573419 1.420000e-22 117.0
35 TraesCS5A01G475000 chr2A 100.000 50 0 0 510 559 382855365 382855414 2.390000e-15 93.5
36 TraesCS5A01G475000 chr5A 100.000 1752 0 0 510 2261 650476180 650474429 0.000000e+00 3236.0
37 TraesCS5A01G475000 chr5A 100.000 293 0 0 1 293 650476689 650476397 1.980000e-150 542.0
38 TraesCS5A01G475000 chr5A 91.468 293 16 3 1877 2161 650467404 650467113 5.850000e-106 394.0
39 TraesCS5A01G475000 chr5A 82.353 374 36 16 1392 1741 650469378 650469011 4.720000e-77 298.0
40 TraesCS5A01G475000 chr5B 92.009 463 34 2 919 1378 658740062 658739600 0.000000e+00 647.0
41 TraesCS5A01G475000 chr5D 94.892 372 15 1 927 1298 522300284 522299917 1.510000e-161 579.0
42 TraesCS5A01G475000 chr5D 91.398 279 12 5 576 845 522300849 522300574 2.740000e-99 372.0
43 TraesCS5A01G475000 chr5D 92.982 57 4 0 1317 1373 522299919 522299863 1.440000e-12 84.2
44 TraesCS5A01G475000 chr6B 90.034 291 13 6 1 290 52185016 52185291 1.650000e-96 363.0
45 TraesCS5A01G475000 chr6B 100.000 95 0 0 1787 1881 714727254 714727348 2.310000e-40 176.0
46 TraesCS5A01G475000 chr6B 96.262 107 2 2 1775 1880 314586716 314586821 8.300000e-40 174.0
47 TraesCS5A01G475000 chr7B 88.435 294 25 4 1877 2161 150550813 150550520 1.660000e-91 346.0
48 TraesCS5A01G475000 chr7B 82.734 417 41 13 1392 1784 150551203 150550794 2.150000e-90 342.0
49 TraesCS5A01G475000 chr7B 88.095 294 26 4 1877 2161 627639742 627639449 7.730000e-90 340.0
50 TraesCS5A01G475000 chr7B 82.075 424 41 17 1387 1784 627640137 627639723 1.670000e-86 329.0
51 TraesCS5A01G475000 chr7B 100.000 95 0 0 1787 1881 20111214 20111308 2.310000e-40 176.0
52 TraesCS5A01G475000 chr7B 86.047 129 13 5 1927 2052 583030072 583030198 1.410000e-27 134.0
53 TraesCS5A01G475000 chr7B 90.476 42 3 1 1495 1535 717038925 717038966 1.000000e-03 54.7
54 TraesCS5A01G475000 chr2B 88.435 294 25 3 1877 2161 485162776 485163069 1.660000e-91 346.0
55 TraesCS5A01G475000 chr1B 88.435 294 25 4 1877 2161 218960625 218960332 1.660000e-91 346.0
56 TraesCS5A01G475000 chr1B 82.339 419 41 15 1390 1784 218961015 218960606 1.290000e-87 333.0
57 TraesCS5A01G475000 chr4B 88.356 292 27 2 1877 2161 86686939 86687230 5.980000e-91 344.0
58 TraesCS5A01G475000 chr4A 88.356 292 27 2 1877 2161 497690548 497690257 5.980000e-91 344.0
59 TraesCS5A01G475000 chr3B 88.356 292 27 2 1877 2161 520462260 520462551 5.980000e-91 344.0
60 TraesCS5A01G475000 chr3B 100.000 94 0 0 1787 1880 250005067 250004974 8.300000e-40 174.0
61 TraesCS5A01G475000 chr3D 81.507 292 21 15 1393 1658 359079295 359079011 2.280000e-50 209.0
62 TraesCS5A01G475000 chr3D 89.362 47 4 1 1490 1535 418843937 418843891 8.720000e-05 58.4
63 TraesCS5A01G475000 chr7D 80.887 293 23 16 1392 1658 600491291 600491576 1.370000e-47 200.0
64 TraesCS5A01G475000 chrUn 100.000 97 0 0 1784 1880 314514599 314514695 1.780000e-41 180.0
65 TraesCS5A01G475000 chr6A 100.000 96 0 0 1785 1880 545146937 545147032 6.420000e-41 178.0
66 TraesCS5A01G475000 chr7A 100.000 95 0 0 1787 1881 689906196 689906102 2.310000e-40 176.0
67 TraesCS5A01G475000 chr7A 98.020 101 1 1 1780 1880 200209066 200208967 8.300000e-40 174.0
68 TraesCS5A01G475000 chr7A 100.000 50 0 0 510 559 10205583 10205632 2.390000e-15 93.5
69 TraesCS5A01G475000 chr1A 100.000 95 0 0 1786 1880 47208062 47208156 2.310000e-40 176.0
70 TraesCS5A01G475000 chr1D 84.921 126 8 5 1535 1658 49573303 49573419 1.420000e-22 117.0
71 TraesCS5A01G475000 chr2A 100.000 50 0 0 510 559 382855365 382855414 2.390000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G475000 chr5A 650474429 650476689 2260 True 1889.000000 3236 100.000000 1 2261 4 chr5A.!!$R2 2260
1 TraesCS5A01G475000 chr5A 650467113 650469378 2265 True 346.000000 394 86.910500 1392 2161 4 chr5A.!!$R1 769
2 TraesCS5A01G475000 chr5D 522299863 522300849 986 True 345.066667 579 93.090667 576 1373 6 chr5D.!!$R1 797
3 TraesCS5A01G475000 chr7B 150550520 150551203 683 True 344.000000 346 85.584500 1392 2161 4 chr7B.!!$R1 769
4 TraesCS5A01G475000 chr7B 627639449 627640137 688 True 334.500000 340 85.085000 1387 2161 4 chr7B.!!$R2 774
5 TraesCS5A01G475000 chr1B 218960332 218961015 683 True 339.500000 346 85.387000 1390 2161 4 chr1B.!!$R1 771

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
175 176 0.043334 TGAGGAGGAAGGAAGGGGAG 59.957 60.0 0.0 0.0 0.0 4.3 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1640 1930 0.034896 AAACTCAGGCACACCCTACG 59.965 55.0 0.0 0.0 44.09 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.070552 GCTGGAGACGACGCCCTT 62.071 66.667 5.12 0.00 35.09 3.95
23 24 2.125912 CTGGAGACGACGCCCTTG 60.126 66.667 5.12 0.00 35.09 3.61
24 25 2.915659 TGGAGACGACGCCCTTGT 60.916 61.111 5.12 0.00 35.09 3.16
25 26 2.126031 GGAGACGACGCCCTTGTC 60.126 66.667 0.00 0.00 33.73 3.18
31 32 2.785258 GACGCCCTTGTCGCATTC 59.215 61.111 0.00 0.00 0.00 2.67
32 33 2.746277 ACGCCCTTGTCGCATTCC 60.746 61.111 0.00 0.00 0.00 3.01
33 34 3.508840 CGCCCTTGTCGCATTCCC 61.509 66.667 0.00 0.00 0.00 3.97
34 35 3.508840 GCCCTTGTCGCATTCCCG 61.509 66.667 0.00 0.00 0.00 5.14
35 36 3.508840 CCCTTGTCGCATTCCCGC 61.509 66.667 0.00 0.00 0.00 6.13
36 37 2.745884 CCTTGTCGCATTCCCGCA 60.746 61.111 0.00 0.00 0.00 5.69
37 38 2.480555 CTTGTCGCATTCCCGCAC 59.519 61.111 0.00 0.00 0.00 5.34
38 39 3.039202 CTTGTCGCATTCCCGCACC 62.039 63.158 0.00 0.00 0.00 5.01
39 40 3.545124 TTGTCGCATTCCCGCACCT 62.545 57.895 0.00 0.00 0.00 4.00
40 41 3.195698 GTCGCATTCCCGCACCTC 61.196 66.667 0.00 0.00 0.00 3.85
41 42 4.467084 TCGCATTCCCGCACCTCC 62.467 66.667 0.00 0.00 0.00 4.30
42 43 4.776322 CGCATTCCCGCACCTCCA 62.776 66.667 0.00 0.00 0.00 3.86
43 44 2.124151 GCATTCCCGCACCTCCAT 60.124 61.111 0.00 0.00 0.00 3.41
44 45 2.189499 GCATTCCCGCACCTCCATC 61.189 63.158 0.00 0.00 0.00 3.51
45 46 1.224315 CATTCCCGCACCTCCATCA 59.776 57.895 0.00 0.00 0.00 3.07
46 47 1.097547 CATTCCCGCACCTCCATCAC 61.098 60.000 0.00 0.00 0.00 3.06
47 48 2.270874 ATTCCCGCACCTCCATCACC 62.271 60.000 0.00 0.00 0.00 4.02
48 49 3.402681 CCCGCACCTCCATCACCT 61.403 66.667 0.00 0.00 0.00 4.00
49 50 2.187946 CCGCACCTCCATCACCTC 59.812 66.667 0.00 0.00 0.00 3.85
50 51 2.362369 CCGCACCTCCATCACCTCT 61.362 63.158 0.00 0.00 0.00 3.69
51 52 1.043116 CCGCACCTCCATCACCTCTA 61.043 60.000 0.00 0.00 0.00 2.43
52 53 0.387202 CGCACCTCCATCACCTCTAG 59.613 60.000 0.00 0.00 0.00 2.43
53 54 0.105778 GCACCTCCATCACCTCTAGC 59.894 60.000 0.00 0.00 0.00 3.42
54 55 1.489481 CACCTCCATCACCTCTAGCA 58.511 55.000 0.00 0.00 0.00 3.49
55 56 1.137872 CACCTCCATCACCTCTAGCAC 59.862 57.143 0.00 0.00 0.00 4.40
56 57 0.755686 CCTCCATCACCTCTAGCACC 59.244 60.000 0.00 0.00 0.00 5.01
57 58 1.489481 CTCCATCACCTCTAGCACCA 58.511 55.000 0.00 0.00 0.00 4.17
58 59 1.411977 CTCCATCACCTCTAGCACCAG 59.588 57.143 0.00 0.00 0.00 4.00
59 60 0.467384 CCATCACCTCTAGCACCAGG 59.533 60.000 0.00 0.00 35.69 4.45
60 61 0.467384 CATCACCTCTAGCACCAGGG 59.533 60.000 0.67 0.00 33.57 4.45
61 62 0.339859 ATCACCTCTAGCACCAGGGA 59.660 55.000 0.67 0.00 33.57 4.20
62 63 0.339859 TCACCTCTAGCACCAGGGAT 59.660 55.000 0.67 0.00 33.57 3.85
63 64 0.467384 CACCTCTAGCACCAGGGATG 59.533 60.000 0.67 0.00 33.57 3.51
64 65 1.341156 ACCTCTAGCACCAGGGATGC 61.341 60.000 0.67 0.00 43.74 3.91
65 66 1.340399 CCTCTAGCACCAGGGATGCA 61.340 60.000 4.90 0.00 45.92 3.96
66 67 0.179062 CTCTAGCACCAGGGATGCAC 60.179 60.000 4.90 0.00 45.92 4.57
67 68 1.522355 CTAGCACCAGGGATGCACG 60.522 63.158 4.90 0.00 45.92 5.34
68 69 3.680620 TAGCACCAGGGATGCACGC 62.681 63.158 4.90 0.00 45.92 5.34
88 89 3.354678 GCATCAGGCAAACACCGT 58.645 55.556 0.00 0.00 43.97 4.83
89 90 1.081242 GCATCAGGCAAACACCGTG 60.081 57.895 0.00 0.00 43.97 4.94
90 91 1.580942 CATCAGGCAAACACCGTGG 59.419 57.895 3.03 0.00 33.69 4.94
91 92 2.268076 ATCAGGCAAACACCGTGGC 61.268 57.895 3.03 0.00 41.67 5.01
94 95 2.951458 GGCAAACACCGTGGCTAC 59.049 61.111 3.03 0.00 38.46 3.58
95 96 1.894756 GGCAAACACCGTGGCTACA 60.895 57.895 3.03 0.00 38.46 2.74
96 97 1.281656 GCAAACACCGTGGCTACAC 59.718 57.895 3.03 0.00 44.23 2.90
104 105 2.809601 GTGGCTACACAGGTCGCG 60.810 66.667 0.00 0.00 46.90 5.87
105 106 2.986979 TGGCTACACAGGTCGCGA 60.987 61.111 3.71 3.71 36.63 5.87
106 107 2.506438 GGCTACACAGGTCGCGAC 60.506 66.667 30.67 30.67 36.63 5.19
107 108 2.874780 GCTACACAGGTCGCGACG 60.875 66.667 30.99 21.22 0.00 5.12
108 109 2.865308 CTACACAGGTCGCGACGA 59.135 61.111 30.99 11.89 0.00 4.20
109 110 1.208358 CTACACAGGTCGCGACGAA 59.792 57.895 30.99 12.38 37.72 3.85
110 111 0.793478 CTACACAGGTCGCGACGAAG 60.793 60.000 30.99 24.09 37.72 3.79
111 112 2.191354 TACACAGGTCGCGACGAAGG 62.191 60.000 30.99 22.17 37.72 3.46
112 113 3.292936 ACAGGTCGCGACGAAGGT 61.293 61.111 30.99 22.12 37.72 3.50
113 114 2.805353 CAGGTCGCGACGAAGGTG 60.805 66.667 30.99 18.73 37.72 4.00
114 115 2.981909 AGGTCGCGACGAAGGTGA 60.982 61.111 30.99 0.00 37.72 4.02
115 116 2.504244 GGTCGCGACGAAGGTGAG 60.504 66.667 30.99 0.00 37.72 3.51
116 117 2.559840 GTCGCGACGAAGGTGAGA 59.440 61.111 25.19 0.00 37.72 3.27
117 118 1.136984 GTCGCGACGAAGGTGAGAT 59.863 57.895 25.19 0.00 37.72 2.75
118 119 0.862283 GTCGCGACGAAGGTGAGATC 60.862 60.000 25.19 0.00 37.72 2.75
119 120 1.586564 CGCGACGAAGGTGAGATCC 60.587 63.158 0.00 0.00 0.00 3.36
120 121 1.511305 GCGACGAAGGTGAGATCCA 59.489 57.895 0.00 0.00 0.00 3.41
121 122 0.108804 GCGACGAAGGTGAGATCCAA 60.109 55.000 0.00 0.00 0.00 3.53
122 123 1.471676 GCGACGAAGGTGAGATCCAAT 60.472 52.381 0.00 0.00 0.00 3.16
123 124 2.464865 CGACGAAGGTGAGATCCAATC 58.535 52.381 0.00 0.00 0.00 2.67
124 125 2.099921 CGACGAAGGTGAGATCCAATCT 59.900 50.000 0.00 0.00 43.70 2.40
125 126 3.429547 CGACGAAGGTGAGATCCAATCTT 60.430 47.826 0.00 0.00 40.38 2.40
126 127 3.866651 ACGAAGGTGAGATCCAATCTTG 58.133 45.455 0.00 0.00 40.38 3.02
136 137 2.028130 CCAATCTTGGCGCATCTCC 58.972 57.895 10.83 0.00 42.21 3.71
137 138 1.645455 CAATCTTGGCGCATCTCCG 59.355 57.895 10.83 0.00 0.00 4.63
150 151 4.840005 CTCCGCGGGAGGGAAAGC 62.840 72.222 27.83 0.00 45.43 3.51
154 155 3.771160 GCGGGAGGGAAAGCTCGA 61.771 66.667 0.00 0.00 0.00 4.04
155 156 2.496817 CGGGAGGGAAAGCTCGAG 59.503 66.667 8.45 8.45 0.00 4.04
156 157 2.352032 CGGGAGGGAAAGCTCGAGT 61.352 63.158 15.13 0.00 0.00 4.18
157 158 1.219393 GGGAGGGAAAGCTCGAGTG 59.781 63.158 15.13 0.00 0.00 3.51
158 159 1.258445 GGGAGGGAAAGCTCGAGTGA 61.258 60.000 15.13 0.00 0.00 3.41
159 160 0.174617 GGAGGGAAAGCTCGAGTGAG 59.825 60.000 15.13 0.00 45.49 3.51
160 161 0.174617 GAGGGAAAGCTCGAGTGAGG 59.825 60.000 15.13 0.00 42.79 3.86
161 162 0.251832 AGGGAAAGCTCGAGTGAGGA 60.252 55.000 15.13 0.00 42.79 3.71
162 163 0.174617 GGGAAAGCTCGAGTGAGGAG 59.825 60.000 15.13 0.00 42.79 3.69
163 164 0.174617 GGAAAGCTCGAGTGAGGAGG 59.825 60.000 15.13 0.00 42.79 4.30
164 165 1.178276 GAAAGCTCGAGTGAGGAGGA 58.822 55.000 15.13 0.00 42.79 3.71
165 166 1.546476 GAAAGCTCGAGTGAGGAGGAA 59.454 52.381 15.13 0.00 42.79 3.36
166 167 1.181786 AAGCTCGAGTGAGGAGGAAG 58.818 55.000 15.13 0.00 42.79 3.46
167 168 0.682855 AGCTCGAGTGAGGAGGAAGG 60.683 60.000 15.13 0.00 42.79 3.46
168 169 0.681564 GCTCGAGTGAGGAGGAAGGA 60.682 60.000 15.13 0.00 42.79 3.36
169 170 1.840737 CTCGAGTGAGGAGGAAGGAA 58.159 55.000 3.62 0.00 38.65 3.36
170 171 1.748493 CTCGAGTGAGGAGGAAGGAAG 59.252 57.143 3.62 0.00 38.65 3.46
171 172 0.820871 CGAGTGAGGAGGAAGGAAGG 59.179 60.000 0.00 0.00 0.00 3.46
172 173 1.199615 GAGTGAGGAGGAAGGAAGGG 58.800 60.000 0.00 0.00 0.00 3.95
173 174 0.252927 AGTGAGGAGGAAGGAAGGGG 60.253 60.000 0.00 0.00 0.00 4.79
174 175 0.252742 GTGAGGAGGAAGGAAGGGGA 60.253 60.000 0.00 0.00 0.00 4.81
175 176 0.043334 TGAGGAGGAAGGAAGGGGAG 59.957 60.000 0.00 0.00 0.00 4.30
176 177 1.307430 AGGAGGAAGGAAGGGGAGC 60.307 63.158 0.00 0.00 0.00 4.70
177 178 2.736826 GGAGGAAGGAAGGGGAGCG 61.737 68.421 0.00 0.00 0.00 5.03
178 179 1.686110 GAGGAAGGAAGGGGAGCGA 60.686 63.158 0.00 0.00 0.00 4.93
179 180 1.229529 AGGAAGGAAGGGGAGCGAA 60.230 57.895 0.00 0.00 0.00 4.70
180 181 1.222113 GGAAGGAAGGGGAGCGAAG 59.778 63.158 0.00 0.00 0.00 3.79
181 182 1.222113 GAAGGAAGGGGAGCGAAGG 59.778 63.158 0.00 0.00 0.00 3.46
182 183 1.539124 AAGGAAGGGGAGCGAAGGT 60.539 57.895 0.00 0.00 46.54 3.50
183 184 1.134438 AAGGAAGGGGAGCGAAGGTT 61.134 55.000 0.00 0.00 39.88 3.50
184 185 1.377333 GGAAGGGGAGCGAAGGTTG 60.377 63.158 0.00 0.00 39.88 3.77
185 186 2.034221 AAGGGGAGCGAAGGTTGC 59.966 61.111 0.00 0.00 39.88 4.17
186 187 3.901797 AAGGGGAGCGAAGGTTGCG 62.902 63.158 0.00 0.00 39.88 4.85
243 244 3.157949 GGCGAGGGAGGAGGGAAG 61.158 72.222 0.00 0.00 0.00 3.46
244 245 2.364448 GCGAGGGAGGAGGGAAGT 60.364 66.667 0.00 0.00 0.00 3.01
245 246 2.726351 GCGAGGGAGGAGGGAAGTG 61.726 68.421 0.00 0.00 0.00 3.16
246 247 2.060980 CGAGGGAGGAGGGAAGTGG 61.061 68.421 0.00 0.00 0.00 4.00
247 248 1.690985 GAGGGAGGAGGGAAGTGGG 60.691 68.421 0.00 0.00 0.00 4.61
248 249 2.692741 GGGAGGAGGGAAGTGGGG 60.693 72.222 0.00 0.00 0.00 4.96
249 250 2.692741 GGAGGAGGGAAGTGGGGG 60.693 72.222 0.00 0.00 0.00 5.40
250 251 2.125225 GAGGAGGGAAGTGGGGGT 59.875 66.667 0.00 0.00 0.00 4.95
251 252 2.204151 AGGAGGGAAGTGGGGGTG 60.204 66.667 0.00 0.00 0.00 4.61
252 253 3.339093 GGAGGGAAGTGGGGGTGG 61.339 72.222 0.00 0.00 0.00 4.61
253 254 3.339093 GAGGGAAGTGGGGGTGGG 61.339 72.222 0.00 0.00 0.00 4.61
257 258 4.366684 GAAGTGGGGGTGGGCCTG 62.367 72.222 4.53 0.00 34.45 4.85
258 259 4.938756 AAGTGGGGGTGGGCCTGA 62.939 66.667 4.53 0.00 34.45 3.86
266 267 3.702048 GTGGGCCTGACGGTGCTA 61.702 66.667 4.53 0.00 0.00 3.49
267 268 3.390521 TGGGCCTGACGGTGCTAG 61.391 66.667 4.53 0.00 0.00 3.42
268 269 4.162690 GGGCCTGACGGTGCTAGG 62.163 72.222 0.84 0.00 34.67 3.02
269 270 3.391382 GGCCTGACGGTGCTAGGT 61.391 66.667 0.00 0.00 34.06 3.08
270 271 2.663196 GCCTGACGGTGCTAGGTT 59.337 61.111 0.00 0.00 34.06 3.50
271 272 1.003718 GCCTGACGGTGCTAGGTTT 60.004 57.895 0.00 0.00 34.06 3.27
272 273 0.605589 GCCTGACGGTGCTAGGTTTT 60.606 55.000 0.00 0.00 34.06 2.43
273 274 1.156736 CCTGACGGTGCTAGGTTTTG 58.843 55.000 0.00 0.00 0.00 2.44
274 275 1.156736 CTGACGGTGCTAGGTTTTGG 58.843 55.000 0.00 0.00 0.00 3.28
275 276 0.887387 TGACGGTGCTAGGTTTTGGC 60.887 55.000 0.00 0.00 0.00 4.52
276 277 0.605589 GACGGTGCTAGGTTTTGGCT 60.606 55.000 0.00 0.00 0.00 4.75
277 278 0.605589 ACGGTGCTAGGTTTTGGCTC 60.606 55.000 0.00 0.00 0.00 4.70
278 279 1.305930 CGGTGCTAGGTTTTGGCTCC 61.306 60.000 0.00 0.00 36.60 4.70
279 280 0.965866 GGTGCTAGGTTTTGGCTCCC 60.966 60.000 0.00 0.00 34.69 4.30
280 281 0.965866 GTGCTAGGTTTTGGCTCCCC 60.966 60.000 0.00 0.00 0.00 4.81
281 282 1.379977 GCTAGGTTTTGGCTCCCCC 60.380 63.158 0.00 0.00 0.00 5.40
282 283 1.077716 CTAGGTTTTGGCTCCCCCG 60.078 63.158 0.00 0.00 35.87 5.73
283 284 1.539372 TAGGTTTTGGCTCCCCCGA 60.539 57.895 0.00 0.00 35.87 5.14
284 285 1.559065 TAGGTTTTGGCTCCCCCGAG 61.559 60.000 0.00 0.00 39.33 4.63
285 286 2.434774 GTTTTGGCTCCCCCGAGT 59.565 61.111 0.00 0.00 38.49 4.18
286 287 1.674651 GTTTTGGCTCCCCCGAGTC 60.675 63.158 0.00 0.00 41.42 3.36
287 288 3.248446 TTTTGGCTCCCCCGAGTCG 62.248 63.158 5.29 5.29 44.19 4.18
533 534 4.871513 GTTCCTCAAACCATTCAGAAACC 58.128 43.478 0.00 0.00 31.20 3.27
534 535 4.177537 TCCTCAAACCATTCAGAAACCA 57.822 40.909 0.00 0.00 0.00 3.67
535 536 4.541705 TCCTCAAACCATTCAGAAACCAA 58.458 39.130 0.00 0.00 0.00 3.67
536 537 4.340950 TCCTCAAACCATTCAGAAACCAAC 59.659 41.667 0.00 0.00 0.00 3.77
537 538 4.290155 CTCAAACCATTCAGAAACCAACG 58.710 43.478 0.00 0.00 0.00 4.10
538 539 3.948473 TCAAACCATTCAGAAACCAACGA 59.052 39.130 0.00 0.00 0.00 3.85
539 540 4.399618 TCAAACCATTCAGAAACCAACGAA 59.600 37.500 0.00 0.00 0.00 3.85
540 541 4.993029 AACCATTCAGAAACCAACGAAA 57.007 36.364 0.00 0.00 0.00 3.46
541 542 4.993029 ACCATTCAGAAACCAACGAAAA 57.007 36.364 0.00 0.00 0.00 2.29
542 543 5.529581 ACCATTCAGAAACCAACGAAAAT 57.470 34.783 0.00 0.00 0.00 1.82
543 544 5.528870 ACCATTCAGAAACCAACGAAAATC 58.471 37.500 0.00 0.00 0.00 2.17
544 545 5.301805 ACCATTCAGAAACCAACGAAAATCT 59.698 36.000 0.00 0.00 0.00 2.40
545 546 6.488683 ACCATTCAGAAACCAACGAAAATCTA 59.511 34.615 0.00 0.00 0.00 1.98
546 547 7.023575 CCATTCAGAAACCAACGAAAATCTAG 58.976 38.462 0.00 0.00 0.00 2.43
547 548 5.607119 TCAGAAACCAACGAAAATCTAGC 57.393 39.130 0.00 0.00 0.00 3.42
548 549 5.305585 TCAGAAACCAACGAAAATCTAGCT 58.694 37.500 0.00 0.00 0.00 3.32
549 550 6.460781 TCAGAAACCAACGAAAATCTAGCTA 58.539 36.000 0.00 0.00 0.00 3.32
550 551 6.932400 TCAGAAACCAACGAAAATCTAGCTAA 59.068 34.615 0.00 0.00 0.00 3.09
551 552 7.442969 TCAGAAACCAACGAAAATCTAGCTAAA 59.557 33.333 0.00 0.00 0.00 1.85
552 553 7.534239 CAGAAACCAACGAAAATCTAGCTAAAC 59.466 37.037 0.00 0.00 0.00 2.01
553 554 7.444487 AGAAACCAACGAAAATCTAGCTAAACT 59.556 33.333 0.00 0.00 0.00 2.66
554 555 6.723131 ACCAACGAAAATCTAGCTAAACTC 57.277 37.500 0.00 0.00 0.00 3.01
555 556 5.347907 ACCAACGAAAATCTAGCTAAACTCG 59.652 40.000 0.00 2.22 0.00 4.18
556 557 5.248834 CAACGAAAATCTAGCTAAACTCGC 58.751 41.667 0.00 0.00 0.00 5.03
557 558 4.491676 ACGAAAATCTAGCTAAACTCGCA 58.508 39.130 0.00 0.00 0.00 5.10
558 559 4.927425 ACGAAAATCTAGCTAAACTCGCAA 59.073 37.500 0.00 0.00 0.00 4.85
559 560 5.581085 ACGAAAATCTAGCTAAACTCGCAAT 59.419 36.000 0.00 0.00 0.00 3.56
560 561 6.755141 ACGAAAATCTAGCTAAACTCGCAATA 59.245 34.615 0.00 0.00 0.00 1.90
561 562 7.438459 ACGAAAATCTAGCTAAACTCGCAATAT 59.562 33.333 0.00 0.00 0.00 1.28
562 563 7.737744 CGAAAATCTAGCTAAACTCGCAATATG 59.262 37.037 0.00 0.00 0.00 1.78
563 564 6.473397 AATCTAGCTAAACTCGCAATATGC 57.527 37.500 0.00 0.00 40.69 3.14
564 565 5.201713 TCTAGCTAAACTCGCAATATGCT 57.798 39.130 0.00 0.00 42.25 3.79
565 566 5.223382 TCTAGCTAAACTCGCAATATGCTC 58.777 41.667 0.00 0.00 42.25 4.26
566 567 4.065321 AGCTAAACTCGCAATATGCTCT 57.935 40.909 0.43 0.00 42.25 4.09
567 568 4.446371 AGCTAAACTCGCAATATGCTCTT 58.554 39.130 0.43 0.00 42.25 2.85
568 569 5.601662 AGCTAAACTCGCAATATGCTCTTA 58.398 37.500 0.43 0.00 42.25 2.10
569 570 5.463724 AGCTAAACTCGCAATATGCTCTTAC 59.536 40.000 0.43 0.00 42.25 2.34
570 571 5.333416 GCTAAACTCGCAATATGCTCTTACC 60.333 44.000 0.43 0.00 42.25 2.85
571 572 4.408182 AACTCGCAATATGCTCTTACCT 57.592 40.909 0.43 0.00 42.25 3.08
572 573 4.408182 ACTCGCAATATGCTCTTACCTT 57.592 40.909 0.43 0.00 42.25 3.50
573 574 4.770795 ACTCGCAATATGCTCTTACCTTT 58.229 39.130 0.43 0.00 42.25 3.11
574 575 5.186198 ACTCGCAATATGCTCTTACCTTTT 58.814 37.500 0.43 0.00 42.25 2.27
575 576 5.648092 ACTCGCAATATGCTCTTACCTTTTT 59.352 36.000 0.43 0.00 42.25 1.94
656 658 1.745232 TCCCCGAATTGTCAAATCCG 58.255 50.000 0.00 0.00 0.00 4.18
664 666 4.862574 CGAATTGTCAAATCCGTGACTCTA 59.137 41.667 6.85 0.00 46.70 2.43
674 676 1.448013 GTGACTCTAGCAACCGCCC 60.448 63.158 0.00 0.00 39.83 6.13
684 686 2.590575 AACCGCCCACACACTTCG 60.591 61.111 0.00 0.00 0.00 3.79
751 761 1.076549 GGGAAGTGGGGTGCATGAA 59.923 57.895 0.00 0.00 0.00 2.57
755 765 3.096092 GGAAGTGGGGTGCATGAATAAA 58.904 45.455 0.00 0.00 0.00 1.40
756 766 3.706086 GGAAGTGGGGTGCATGAATAAAT 59.294 43.478 0.00 0.00 0.00 1.40
789 799 7.759489 ATTAGAAACACTTTGCCTCACATTA 57.241 32.000 0.00 0.00 0.00 1.90
841 851 6.598064 CGATACAACTTCCCCTAAATCTTTGT 59.402 38.462 0.00 0.00 0.00 2.83
842 852 7.120726 CGATACAACTTCCCCTAAATCTTTGTT 59.879 37.037 0.00 0.00 0.00 2.83
843 853 9.457436 GATACAACTTCCCCTAAATCTTTGTTA 57.543 33.333 0.00 0.00 0.00 2.41
844 854 9.990868 ATACAACTTCCCCTAAATCTTTGTTAT 57.009 29.630 0.00 0.00 0.00 1.89
845 855 8.122472 ACAACTTCCCCTAAATCTTTGTTATG 57.878 34.615 0.00 0.00 0.00 1.90
846 856 7.178451 ACAACTTCCCCTAAATCTTTGTTATGG 59.822 37.037 0.00 0.00 0.00 2.74
847 857 6.800890 ACTTCCCCTAAATCTTTGTTATGGT 58.199 36.000 0.00 0.00 0.00 3.55
848 858 7.246027 ACTTCCCCTAAATCTTTGTTATGGTT 58.754 34.615 0.00 0.00 0.00 3.67
849 859 7.733047 ACTTCCCCTAAATCTTTGTTATGGTTT 59.267 33.333 0.00 0.00 0.00 3.27
850 860 8.499288 TTCCCCTAAATCTTTGTTATGGTTTT 57.501 30.769 0.00 0.00 0.00 2.43
851 861 8.499288 TCCCCTAAATCTTTGTTATGGTTTTT 57.501 30.769 0.00 0.00 0.00 1.94
869 879 2.611225 TTTTTGCGGGCAATCTTTGT 57.389 40.000 6.95 0.00 35.70 2.83
870 880 2.611225 TTTTGCGGGCAATCTTTGTT 57.389 40.000 6.95 0.00 35.70 2.83
871 881 3.735237 TTTTGCGGGCAATCTTTGTTA 57.265 38.095 6.95 0.00 35.70 2.41
872 882 3.951775 TTTGCGGGCAATCTTTGTTAT 57.048 38.095 6.95 0.00 35.70 1.89
873 883 2.937469 TGCGGGCAATCTTTGTTATG 57.063 45.000 0.00 0.00 0.00 1.90
874 884 2.441410 TGCGGGCAATCTTTGTTATGA 58.559 42.857 0.00 0.00 0.00 2.15
875 885 2.822561 TGCGGGCAATCTTTGTTATGAA 59.177 40.909 0.00 0.00 0.00 2.57
876 886 3.256879 TGCGGGCAATCTTTGTTATGAAA 59.743 39.130 0.00 0.00 0.00 2.69
877 887 4.081752 TGCGGGCAATCTTTGTTATGAAAT 60.082 37.500 0.00 0.00 0.00 2.17
878 888 4.869861 GCGGGCAATCTTTGTTATGAAATT 59.130 37.500 0.00 0.00 0.00 1.82
879 889 5.351189 GCGGGCAATCTTTGTTATGAAATTT 59.649 36.000 0.00 0.00 0.00 1.82
880 890 6.533367 GCGGGCAATCTTTGTTATGAAATTTA 59.467 34.615 0.00 0.00 0.00 1.40
881 891 7.224557 GCGGGCAATCTTTGTTATGAAATTTAT 59.775 33.333 0.00 0.00 0.00 1.40
882 892 9.097257 CGGGCAATCTTTGTTATGAAATTTATT 57.903 29.630 0.00 0.00 0.00 1.40
920 936 7.124147 TGACTGATGTTAGATGTATTCAGGTCA 59.876 37.037 0.00 0.00 0.00 4.02
922 938 9.147732 ACTGATGTTAGATGTATTCAGGTCATA 57.852 33.333 0.00 0.00 0.00 2.15
988 1254 4.280174 AGTTCTTCAGGCGTTCTAGTACAA 59.720 41.667 0.00 0.00 0.00 2.41
1018 1284 0.179097 GATGCCTCGACTTGGAGACC 60.179 60.000 0.00 0.00 36.08 3.85
1033 1299 1.478510 GAGACCCAGAAGCATCTTCGA 59.521 52.381 0.00 0.00 32.03 3.71
1120 1386 9.970553 ATAACAACCTATATAGATACGGAGTGA 57.029 33.333 11.53 0.00 45.73 3.41
1156 1422 5.191722 ACCTTCTTATATTGGAGCAGAACCA 59.808 40.000 0.00 0.00 35.47 3.67
1157 1423 6.126361 ACCTTCTTATATTGGAGCAGAACCAT 60.126 38.462 0.00 0.00 37.26 3.55
1174 1440 0.873312 CATGCGGTGTCTCGGAGATG 60.873 60.000 11.46 0.00 33.89 2.90
1185 1451 0.252761 TCGGAGATGCTTTCATGGCA 59.747 50.000 0.00 0.00 44.05 4.92
1213 1479 6.884280 ACCTTCTTTGGTTAGTTCTTGATG 57.116 37.500 0.00 0.00 36.89 3.07
1271 1537 7.242359 TGGGGGAGAATTTAAGTGATGTAAAA 58.758 34.615 0.00 0.00 0.00 1.52
1272 1538 7.177744 TGGGGGAGAATTTAAGTGATGTAAAAC 59.822 37.037 0.00 0.00 0.00 2.43
1297 1563 3.118956 ACAATTTCTCAAAACCGCAACCA 60.119 39.130 0.00 0.00 0.00 3.67
1298 1564 3.810310 ATTTCTCAAAACCGCAACCAA 57.190 38.095 0.00 0.00 0.00 3.67
1299 1565 3.594603 TTTCTCAAAACCGCAACCAAA 57.405 38.095 0.00 0.00 0.00 3.28
1300 1566 3.810310 TTCTCAAAACCGCAACCAAAT 57.190 38.095 0.00 0.00 0.00 2.32
1301 1567 3.810310 TCTCAAAACCGCAACCAAATT 57.190 38.095 0.00 0.00 0.00 1.82
1302 1568 3.452474 TCTCAAAACCGCAACCAAATTG 58.548 40.909 0.00 0.00 41.69 2.32
1303 1569 3.118956 TCTCAAAACCGCAACCAAATTGT 60.119 39.130 0.00 0.00 40.77 2.71
1304 1570 2.932614 TCAAAACCGCAACCAAATTGTG 59.067 40.909 0.00 0.00 46.57 3.33
1305 1571 2.675348 CAAAACCGCAACCAAATTGTGT 59.325 40.909 0.00 0.00 45.74 3.72
1306 1572 3.802948 AAACCGCAACCAAATTGTGTA 57.197 38.095 0.00 0.00 45.74 2.90
1307 1573 3.363341 AACCGCAACCAAATTGTGTAG 57.637 42.857 0.00 0.00 45.74 2.74
1308 1574 1.000717 ACCGCAACCAAATTGTGTAGC 60.001 47.619 0.00 0.00 45.74 3.58
1309 1575 1.000827 CCGCAACCAAATTGTGTAGCA 60.001 47.619 0.00 0.00 45.74 3.49
1310 1576 2.050691 CGCAACCAAATTGTGTAGCAC 58.949 47.619 0.00 0.00 42.79 4.40
1311 1577 2.287547 CGCAACCAAATTGTGTAGCACT 60.288 45.455 0.90 0.00 42.79 4.40
1312 1578 3.308530 GCAACCAAATTGTGTAGCACTC 58.691 45.455 0.90 0.00 40.77 3.51
1313 1579 3.857010 GCAACCAAATTGTGTAGCACTCC 60.857 47.826 0.90 0.00 40.77 3.85
1314 1580 3.222173 ACCAAATTGTGTAGCACTCCA 57.778 42.857 0.90 0.00 35.11 3.86
1315 1581 3.766545 ACCAAATTGTGTAGCACTCCAT 58.233 40.909 0.90 0.00 35.11 3.41
1316 1582 3.758554 ACCAAATTGTGTAGCACTCCATC 59.241 43.478 0.90 0.00 35.11 3.51
1317 1583 3.129287 CCAAATTGTGTAGCACTCCATCC 59.871 47.826 0.90 0.00 35.11 3.51
1349 1615 8.910351 AAGTAAATGAAGTTCTAGCTTTGTCT 57.090 30.769 4.17 1.43 0.00 3.41
1379 1645 8.874816 GTGAAACTTGTTTAATTTTAACTGGCA 58.125 29.630 0.00 0.00 0.00 4.92
1380 1646 9.436957 TGAAACTTGTTTAATTTTAACTGGCAA 57.563 25.926 0.00 0.00 0.00 4.52
1381 1647 9.914923 GAAACTTGTTTAATTTTAACTGGCAAG 57.085 29.630 0.00 0.00 37.43 4.01
1382 1648 9.443323 AAACTTGTTTAATTTTAACTGGCAAGT 57.557 25.926 0.00 0.00 43.61 3.16
1386 1652 8.582433 TGTTTAATTTTAACTGGCAAGTAAGC 57.418 30.769 0.00 0.00 34.77 3.09
1387 1653 8.198109 TGTTTAATTTTAACTGGCAAGTAAGCA 58.802 29.630 0.00 0.00 34.77 3.91
1388 1654 9.036671 GTTTAATTTTAACTGGCAAGTAAGCAA 57.963 29.630 0.00 0.00 34.77 3.91
1399 1665 7.067737 ACTGGCAAGTAAGCAAAAACTAGTAAA 59.932 33.333 0.00 0.00 33.79 2.01
1403 1669 9.244799 GCAAGTAAGCAAAAACTAGTAAAATGT 57.755 29.630 0.00 0.00 0.00 2.71
1432 1698 3.627395 TGCTACGGGATCACAAAGATT 57.373 42.857 0.00 0.00 37.00 2.40
1459 1725 9.125026 GGAGATCAGGTGAAACATTGTTTATAT 57.875 33.333 14.49 1.59 39.98 0.86
1464 1730 9.952030 TCAGGTGAAACATTGTTTATATAGTGA 57.048 29.630 14.49 10.01 39.98 3.41
1490 1756 3.933332 GGAGTCTATGTTGCTACAACACC 59.067 47.826 14.81 7.39 37.91 4.16
1491 1757 4.562757 GGAGTCTATGTTGCTACAACACCA 60.563 45.833 14.81 5.98 37.91 4.17
1611 1901 9.167311 ACCATACAGAAGAGTGTAAATCAATTC 57.833 33.333 0.00 0.00 36.51 2.17
1624 1914 3.996150 ATCAATTCGATGAACATGGGC 57.004 42.857 0.00 0.00 31.20 5.36
1625 1915 1.670295 TCAATTCGATGAACATGGGCG 59.330 47.619 0.00 0.00 0.00 6.13
1633 1923 1.745489 GAACATGGGCGACTGGTCC 60.745 63.158 0.00 0.00 42.42 4.46
1640 1930 0.179054 GGGCGACTGGTCCTAATTCC 60.179 60.000 0.00 0.00 37.47 3.01
1703 1993 7.363355 CCAGGACATAGGAGTACATGATGTATC 60.363 44.444 8.72 7.37 35.05 2.24
1738 2029 3.546616 GCCAAACAAAAGCATGTGAAAGC 60.547 43.478 0.00 0.00 32.81 3.51
1740 2983 5.049167 CCAAACAAAAGCATGTGAAAGCTA 58.951 37.500 0.00 0.00 40.90 3.32
1760 3634 6.162079 AGCTAGCTACATGCATACACTTATG 58.838 40.000 17.69 0.00 45.94 1.90
1763 3637 4.993584 AGCTACATGCATACACTTATGAGC 59.006 41.667 0.00 0.00 45.94 4.26
1779 3653 7.493320 CACTTATGAGCATTTTAAATGGTGCAT 59.507 33.333 24.24 23.84 39.94 3.96
1785 3659 5.105228 AGCATTTTAAATGGTGCATAGCAGT 60.105 36.000 19.64 0.00 40.08 4.40
1786 3660 6.096705 AGCATTTTAAATGGTGCATAGCAGTA 59.903 34.615 19.64 0.00 40.08 2.74
1787 3661 6.418819 GCATTTTAAATGGTGCATAGCAGTAG 59.581 38.462 17.89 0.00 40.08 2.57
1789 3663 2.645838 AATGGTGCATAGCAGTAGGG 57.354 50.000 0.00 0.00 40.08 3.53
1790 3664 0.109342 ATGGTGCATAGCAGTAGGGC 59.891 55.000 0.00 0.00 40.08 5.19
1791 3665 1.271127 TGGTGCATAGCAGTAGGGCA 61.271 55.000 0.00 0.00 40.08 5.36
1792 3666 0.107214 GGTGCATAGCAGTAGGGCAA 60.107 55.000 0.00 0.00 40.08 4.52
1793 3667 1.017387 GTGCATAGCAGTAGGGCAAC 58.983 55.000 0.00 0.00 40.08 4.17
1794 3668 0.107214 TGCATAGCAGTAGGGCAACC 60.107 55.000 0.00 0.00 46.60 3.77
1805 3679 4.413928 GGCAACCTGGTGCATGTA 57.586 55.556 18.44 0.00 46.81 2.29
1806 3680 2.183409 GGCAACCTGGTGCATGTAG 58.817 57.895 18.44 0.00 46.81 2.74
1807 3681 1.508088 GCAACCTGGTGCATGTAGC 59.492 57.895 6.00 6.00 44.29 3.58
1808 3682 0.962356 GCAACCTGGTGCATGTAGCT 60.962 55.000 14.15 0.00 44.29 3.32
1809 3683 1.089920 CAACCTGGTGCATGTAGCTC 58.910 55.000 14.15 0.00 45.94 4.09
1815 3689 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
1816 3690 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
1817 3691 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
1818 3692 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
1821 3695 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
1833 3707 4.785453 GCGCAGGGTCCAGGGAAG 62.785 72.222 0.30 0.00 0.00 3.46
1834 3708 4.101448 CGCAGGGTCCAGGGAAGG 62.101 72.222 0.00 0.00 0.00 3.46
1835 3709 3.732849 GCAGGGTCCAGGGAAGGG 61.733 72.222 0.00 0.00 0.00 3.95
1836 3710 2.204151 CAGGGTCCAGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
1837 3711 2.125225 AGGGTCCAGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
1838 3712 3.015753 GGGTCCAGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
1839 3713 3.400054 GGTCCAGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
1840 3714 2.284405 GTCCAGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
1841 3715 2.284405 TCCAGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
1842 3716 3.400054 CCAGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
1843 3717 2.606519 CAGGGAAGGGTCCGACCA 60.607 66.667 19.43 0.00 46.04 4.02
1844 3718 2.606826 AGGGAAGGGTCCGACCAC 60.607 66.667 19.43 8.70 46.04 4.16
1845 3719 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
1846 3720 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
1847 3721 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
1848 3722 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
1849 3723 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
1850 3724 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
1851 3725 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
1861 3735 4.996788 ACCACTTTGGGTCTATAGTACG 57.003 45.455 0.00 0.00 43.37 3.67
1862 3736 3.131755 ACCACTTTGGGTCTATAGTACGC 59.868 47.826 0.00 6.13 43.37 4.42
1863 3737 3.131577 CCACTTTGGGTCTATAGTACGCA 59.868 47.826 13.98 13.98 37.94 5.24
1864 3738 4.360563 CACTTTGGGTCTATAGTACGCAG 58.639 47.826 16.00 11.29 40.36 5.18
1865 3739 3.181478 ACTTTGGGTCTATAGTACGCAGC 60.181 47.826 16.00 2.07 40.36 5.25
1866 3740 1.325355 TGGGTCTATAGTACGCAGCC 58.675 55.000 13.98 8.23 35.18 4.85
1867 3741 1.133575 TGGGTCTATAGTACGCAGCCT 60.134 52.381 13.98 0.00 35.18 4.58
1868 3742 1.962100 GGGTCTATAGTACGCAGCCTT 59.038 52.381 0.00 0.00 0.00 4.35
1869 3743 2.364647 GGGTCTATAGTACGCAGCCTTT 59.635 50.000 0.00 0.00 0.00 3.11
1870 3744 3.552478 GGGTCTATAGTACGCAGCCTTTC 60.552 52.174 0.00 0.00 0.00 2.62
1871 3745 3.552478 GGTCTATAGTACGCAGCCTTTCC 60.552 52.174 0.00 0.00 0.00 3.13
1872 3746 2.626743 TCTATAGTACGCAGCCTTTCCC 59.373 50.000 0.00 0.00 0.00 3.97
1873 3747 1.497161 ATAGTACGCAGCCTTTCCCT 58.503 50.000 0.00 0.00 0.00 4.20
1874 3748 2.148446 TAGTACGCAGCCTTTCCCTA 57.852 50.000 0.00 0.00 0.00 3.53
1875 3749 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18
1876 3750 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
1877 3751 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
1878 3752 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
1879 3753 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
1880 3754 1.818674 CGCAGCCTTTCCCTACATTTT 59.181 47.619 0.00 0.00 0.00 1.82
1881 3755 3.013921 CGCAGCCTTTCCCTACATTTTA 58.986 45.455 0.00 0.00 0.00 1.52
1882 3756 3.442273 CGCAGCCTTTCCCTACATTTTAA 59.558 43.478 0.00 0.00 0.00 1.52
1883 3757 4.082463 CGCAGCCTTTCCCTACATTTTAAA 60.082 41.667 0.00 0.00 0.00 1.52
1884 3758 5.394115 CGCAGCCTTTCCCTACATTTTAAAT 60.394 40.000 0.00 0.00 0.00 1.40
1885 3759 5.812127 GCAGCCTTTCCCTACATTTTAAATG 59.188 40.000 15.25 15.25 0.00 2.32
1886 3760 6.340522 CAGCCTTTCCCTACATTTTAAATGG 58.659 40.000 20.00 4.33 0.00 3.16
1887 3761 6.022958 AGCCTTTCCCTACATTTTAAATGGT 58.977 36.000 20.00 9.49 0.00 3.55
1888 3762 6.070824 AGCCTTTCCCTACATTTTAAATGGTG 60.071 38.462 20.00 12.22 0.00 4.17
1889 3763 6.106003 CCTTTCCCTACATTTTAAATGGTGC 58.894 40.000 20.00 0.00 0.00 5.01
1890 3764 6.295575 CCTTTCCCTACATTTTAAATGGTGCA 60.296 38.462 20.00 3.71 0.00 4.57
1891 3765 6.865834 TTCCCTACATTTTAAATGGTGCAT 57.134 33.333 20.00 3.30 0.00 3.96
1892 3766 7.962995 TTCCCTACATTTTAAATGGTGCATA 57.037 32.000 20.00 4.22 0.00 3.14
1893 3767 7.581213 TCCCTACATTTTAAATGGTGCATAG 57.419 36.000 20.00 12.12 0.00 2.23
1894 3768 6.040391 TCCCTACATTTTAAATGGTGCATAGC 59.960 38.462 20.00 0.00 0.00 2.97
1895 3769 6.183360 CCCTACATTTTAAATGGTGCATAGCA 60.183 38.462 20.00 0.00 38.89 3.49
1896 3770 6.919662 CCTACATTTTAAATGGTGCATAGCAG 59.080 38.462 20.00 4.80 40.08 4.24
1897 3771 6.284891 ACATTTTAAATGGTGCATAGCAGT 57.715 33.333 20.00 0.00 40.08 4.40
1898 3772 7.403312 ACATTTTAAATGGTGCATAGCAGTA 57.597 32.000 20.00 0.00 40.08 2.74
1899 3773 7.257722 ACATTTTAAATGGTGCATAGCAGTAC 58.742 34.615 20.00 0.00 40.08 2.73
1900 3774 7.122650 ACATTTTAAATGGTGCATAGCAGTACT 59.877 33.333 20.00 0.00 40.08 2.73
1901 3775 6.435430 TTTAAATGGTGCATAGCAGTACTG 57.565 37.500 18.93 18.93 40.08 2.74
1915 3789 8.946085 CATAGCAGTACTGACCTAAAATGAAAA 58.054 33.333 27.08 0.00 0.00 2.29
1939 3813 0.105778 CTAACCCCTAGCAGAGCAGC 59.894 60.000 0.00 0.00 0.00 5.25
1954 3828 2.289547 GAGCAGCGTAACAACCAAAAGA 59.710 45.455 0.00 0.00 0.00 2.52
2096 3975 5.716228 AGGAATCAAGCAAAATCCACATGTA 59.284 36.000 0.00 0.00 32.47 2.29
2161 4040 2.178106 GGGTAGAGGAGGAGAGGATGAA 59.822 54.545 0.00 0.00 0.00 2.57
2162 4041 3.496331 GGTAGAGGAGGAGAGGATGAAG 58.504 54.545 0.00 0.00 0.00 3.02
2163 4042 2.086610 AGAGGAGGAGAGGATGAAGC 57.913 55.000 0.00 0.00 0.00 3.86
2164 4043 1.290431 AGAGGAGGAGAGGATGAAGCA 59.710 52.381 0.00 0.00 0.00 3.91
2165 4044 2.090606 AGAGGAGGAGAGGATGAAGCAT 60.091 50.000 0.00 0.00 0.00 3.79
2166 4045 2.705127 GAGGAGGAGAGGATGAAGCATT 59.295 50.000 0.00 0.00 0.00 3.56
2167 4046 3.121688 AGGAGGAGAGGATGAAGCATTT 58.878 45.455 0.00 0.00 0.00 2.32
2168 4047 3.117963 AGGAGGAGAGGATGAAGCATTTG 60.118 47.826 0.00 0.00 0.00 2.32
2169 4048 3.118112 GGAGGAGAGGATGAAGCATTTGA 60.118 47.826 0.00 0.00 0.00 2.69
2170 4049 4.128643 GAGGAGAGGATGAAGCATTTGAG 58.871 47.826 0.00 0.00 0.00 3.02
2171 4050 2.617774 GGAGAGGATGAAGCATTTGAGC 59.382 50.000 0.00 0.00 0.00 4.26
2172 4051 2.286872 AGAGGATGAAGCATTTGAGCG 58.713 47.619 0.00 0.00 40.15 5.03
2173 4052 1.332997 GAGGATGAAGCATTTGAGCGG 59.667 52.381 0.00 0.00 40.15 5.52
2174 4053 0.248784 GGATGAAGCATTTGAGCGGC 60.249 55.000 0.00 0.00 40.15 6.53
2175 4054 0.248784 GATGAAGCATTTGAGCGGCC 60.249 55.000 0.00 0.00 40.15 6.13
2176 4055 1.669999 ATGAAGCATTTGAGCGGCCC 61.670 55.000 0.00 0.00 40.15 5.80
2177 4056 3.401243 GAAGCATTTGAGCGGCCCG 62.401 63.158 0.00 0.00 40.15 6.13
2178 4057 3.918253 AAGCATTTGAGCGGCCCGA 62.918 57.895 7.68 0.00 40.15 5.14
2179 4058 4.179579 GCATTTGAGCGGCCCGAC 62.180 66.667 7.68 0.00 0.00 4.79
2180 4059 2.745884 CATTTGAGCGGCCCGACA 60.746 61.111 7.68 2.78 0.00 4.35
2181 4060 2.114670 CATTTGAGCGGCCCGACAT 61.115 57.895 7.68 0.00 0.00 3.06
2182 4061 1.819632 ATTTGAGCGGCCCGACATC 60.820 57.895 7.68 1.26 0.00 3.06
2183 4062 3.969250 TTTGAGCGGCCCGACATCC 62.969 63.158 7.68 0.00 0.00 3.51
2185 4064 4.162690 GAGCGGCCCGACATCCTT 62.163 66.667 7.68 0.00 0.00 3.36
2186 4065 4.162690 AGCGGCCCGACATCCTTC 62.163 66.667 7.68 0.00 0.00 3.46
2187 4066 4.467084 GCGGCCCGACATCCTTCA 62.467 66.667 7.68 0.00 0.00 3.02
2188 4067 2.505982 CGGCCCGACATCCTTCAT 59.494 61.111 0.00 0.00 0.00 2.57
2189 4068 1.889105 CGGCCCGACATCCTTCATG 60.889 63.158 0.00 0.00 38.64 3.07
2190 4069 2.189499 GGCCCGACATCCTTCATGC 61.189 63.158 0.00 0.00 35.65 4.06
2191 4070 1.451927 GCCCGACATCCTTCATGCA 60.452 57.895 0.00 0.00 35.65 3.96
2192 4071 0.820891 GCCCGACATCCTTCATGCAT 60.821 55.000 0.00 0.00 35.65 3.96
2193 4072 1.543208 GCCCGACATCCTTCATGCATA 60.543 52.381 0.00 0.00 35.65 3.14
2194 4073 2.877300 GCCCGACATCCTTCATGCATAT 60.877 50.000 0.00 0.00 35.65 1.78
2195 4074 3.619733 GCCCGACATCCTTCATGCATATA 60.620 47.826 0.00 0.00 35.65 0.86
2196 4075 4.774124 CCCGACATCCTTCATGCATATAT 58.226 43.478 0.00 0.00 35.65 0.86
2197 4076 5.684813 GCCCGACATCCTTCATGCATATATA 60.685 44.000 0.00 0.00 35.65 0.86
2198 4077 6.528321 CCCGACATCCTTCATGCATATATAT 58.472 40.000 0.00 0.00 35.65 0.86
2199 4078 7.670364 CCCGACATCCTTCATGCATATATATA 58.330 38.462 0.00 0.00 35.65 0.86
2200 4079 8.316946 CCCGACATCCTTCATGCATATATATAT 58.683 37.037 0.00 0.00 35.65 0.86
2227 4106 5.980698 ATATGCACAACGAGAAGAATGAG 57.019 39.130 0.00 0.00 0.00 2.90
2228 4107 3.385193 TGCACAACGAGAAGAATGAGA 57.615 42.857 0.00 0.00 0.00 3.27
2229 4108 3.727726 TGCACAACGAGAAGAATGAGAA 58.272 40.909 0.00 0.00 0.00 2.87
2230 4109 3.742882 TGCACAACGAGAAGAATGAGAAG 59.257 43.478 0.00 0.00 0.00 2.85
2231 4110 3.990469 GCACAACGAGAAGAATGAGAAGA 59.010 43.478 0.00 0.00 0.00 2.87
2232 4111 4.449068 GCACAACGAGAAGAATGAGAAGAA 59.551 41.667 0.00 0.00 0.00 2.52
2233 4112 5.389307 GCACAACGAGAAGAATGAGAAGAAG 60.389 44.000 0.00 0.00 0.00 2.85
2234 4113 5.923114 CACAACGAGAAGAATGAGAAGAAGA 59.077 40.000 0.00 0.00 0.00 2.87
2235 4114 5.923684 ACAACGAGAAGAATGAGAAGAAGAC 59.076 40.000 0.00 0.00 0.00 3.01
2236 4115 5.713792 ACGAGAAGAATGAGAAGAAGACA 57.286 39.130 0.00 0.00 0.00 3.41
2237 4116 6.090483 ACGAGAAGAATGAGAAGAAGACAA 57.910 37.500 0.00 0.00 0.00 3.18
2238 4117 6.516718 ACGAGAAGAATGAGAAGAAGACAAA 58.483 36.000 0.00 0.00 0.00 2.83
2239 4118 6.986817 ACGAGAAGAATGAGAAGAAGACAAAA 59.013 34.615 0.00 0.00 0.00 2.44
2240 4119 7.170658 ACGAGAAGAATGAGAAGAAGACAAAAG 59.829 37.037 0.00 0.00 0.00 2.27
2241 4120 7.383572 CGAGAAGAATGAGAAGAAGACAAAAGA 59.616 37.037 0.00 0.00 0.00 2.52
2242 4121 9.218440 GAGAAGAATGAGAAGAAGACAAAAGAT 57.782 33.333 0.00 0.00 0.00 2.40
2243 4122 9.218440 AGAAGAATGAGAAGAAGACAAAAGATC 57.782 33.333 0.00 0.00 0.00 2.75
2244 4123 7.593875 AGAATGAGAAGAAGACAAAAGATCG 57.406 36.000 0.00 0.00 0.00 3.69
2245 4124 7.382110 AGAATGAGAAGAAGACAAAAGATCGA 58.618 34.615 0.00 0.00 0.00 3.59
2246 4125 8.040132 AGAATGAGAAGAAGACAAAAGATCGAT 58.960 33.333 0.00 0.00 0.00 3.59
2247 4126 7.769272 ATGAGAAGAAGACAAAAGATCGATC 57.231 36.000 17.91 17.91 0.00 3.69
2248 4127 6.929625 TGAGAAGAAGACAAAAGATCGATCT 58.070 36.000 22.32 22.32 39.22 2.75
2249 4128 8.056407 TGAGAAGAAGACAAAAGATCGATCTA 57.944 34.615 27.52 3.88 35.76 1.98
2250 4129 7.971168 TGAGAAGAAGACAAAAGATCGATCTAC 59.029 37.037 27.52 15.75 35.76 2.59
2251 4130 6.970043 AGAAGAAGACAAAAGATCGATCTACG 59.030 38.462 27.52 19.73 44.09 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.838486 CGTCGTCTCCAGCCGCTC 62.838 72.222 0.00 0.00 0.00 5.03
5 6 4.070552 AAGGGCGTCGTCTCCAGC 62.071 66.667 0.00 0.00 0.00 4.85
6 7 2.125912 CAAGGGCGTCGTCTCCAG 60.126 66.667 0.00 0.00 0.00 3.86
7 8 2.915659 ACAAGGGCGTCGTCTCCA 60.916 61.111 0.00 0.00 0.00 3.86
8 9 2.126031 GACAAGGGCGTCGTCTCC 60.126 66.667 0.00 0.00 0.00 3.71
14 15 2.750888 GGAATGCGACAAGGGCGTC 61.751 63.158 0.00 0.00 0.00 5.19
15 16 2.746277 GGAATGCGACAAGGGCGT 60.746 61.111 0.00 0.00 0.00 5.68
16 17 3.508840 GGGAATGCGACAAGGGCG 61.509 66.667 0.00 0.00 0.00 6.13
17 18 3.508840 CGGGAATGCGACAAGGGC 61.509 66.667 0.00 0.00 0.00 5.19
18 19 3.508840 GCGGGAATGCGACAAGGG 61.509 66.667 0.00 0.00 0.00 3.95
19 20 2.745884 TGCGGGAATGCGACAAGG 60.746 61.111 0.00 0.00 37.81 3.61
20 21 2.480555 GTGCGGGAATGCGACAAG 59.519 61.111 0.00 0.00 37.81 3.16
21 22 3.053291 GGTGCGGGAATGCGACAA 61.053 61.111 0.00 0.00 37.81 3.18
22 23 3.950794 GAGGTGCGGGAATGCGACA 62.951 63.158 0.00 0.00 37.81 4.35
23 24 3.195698 GAGGTGCGGGAATGCGAC 61.196 66.667 0.00 0.00 37.81 5.19
24 25 4.467084 GGAGGTGCGGGAATGCGA 62.467 66.667 0.00 0.00 37.81 5.10
25 26 4.776322 TGGAGGTGCGGGAATGCG 62.776 66.667 0.00 0.00 37.81 4.73
26 27 2.124151 ATGGAGGTGCGGGAATGC 60.124 61.111 0.00 0.00 0.00 3.56
27 28 1.097547 GTGATGGAGGTGCGGGAATG 61.098 60.000 0.00 0.00 0.00 2.67
28 29 1.224592 GTGATGGAGGTGCGGGAAT 59.775 57.895 0.00 0.00 0.00 3.01
29 30 2.668632 GTGATGGAGGTGCGGGAA 59.331 61.111 0.00 0.00 0.00 3.97
30 31 3.399181 GGTGATGGAGGTGCGGGA 61.399 66.667 0.00 0.00 0.00 5.14
31 32 3.391665 GAGGTGATGGAGGTGCGGG 62.392 68.421 0.00 0.00 0.00 6.13
32 33 1.043116 TAGAGGTGATGGAGGTGCGG 61.043 60.000 0.00 0.00 0.00 5.69
33 34 0.387202 CTAGAGGTGATGGAGGTGCG 59.613 60.000 0.00 0.00 0.00 5.34
34 35 0.105778 GCTAGAGGTGATGGAGGTGC 59.894 60.000 0.00 0.00 0.00 5.01
35 36 1.137872 GTGCTAGAGGTGATGGAGGTG 59.862 57.143 0.00 0.00 0.00 4.00
36 37 1.490574 GTGCTAGAGGTGATGGAGGT 58.509 55.000 0.00 0.00 0.00 3.85
37 38 0.755686 GGTGCTAGAGGTGATGGAGG 59.244 60.000 0.00 0.00 0.00 4.30
38 39 1.411977 CTGGTGCTAGAGGTGATGGAG 59.588 57.143 0.00 0.00 0.00 3.86
39 40 1.489481 CTGGTGCTAGAGGTGATGGA 58.511 55.000 0.00 0.00 0.00 3.41
40 41 0.467384 CCTGGTGCTAGAGGTGATGG 59.533 60.000 0.00 0.00 0.00 3.51
41 42 0.467384 CCCTGGTGCTAGAGGTGATG 59.533 60.000 0.00 0.00 0.00 3.07
42 43 0.339859 TCCCTGGTGCTAGAGGTGAT 59.660 55.000 0.00 0.00 0.00 3.06
43 44 0.339859 ATCCCTGGTGCTAGAGGTGA 59.660 55.000 0.00 0.00 0.00 4.02
44 45 0.467384 CATCCCTGGTGCTAGAGGTG 59.533 60.000 0.00 0.00 0.00 4.00
45 46 1.341156 GCATCCCTGGTGCTAGAGGT 61.341 60.000 0.00 0.00 39.45 3.85
46 47 1.340399 TGCATCCCTGGTGCTAGAGG 61.340 60.000 10.23 0.00 42.92 3.69
47 48 0.179062 GTGCATCCCTGGTGCTAGAG 60.179 60.000 10.23 0.00 42.92 2.43
48 49 1.907739 GTGCATCCCTGGTGCTAGA 59.092 57.895 10.23 0.00 42.92 2.43
49 50 1.522355 CGTGCATCCCTGGTGCTAG 60.522 63.158 10.23 1.68 42.92 3.42
50 51 2.584064 CGTGCATCCCTGGTGCTA 59.416 61.111 10.23 0.00 42.92 3.49
68 69 2.568090 GTGTTTGCCTGATGCCGG 59.432 61.111 0.00 0.00 40.16 6.13
69 70 2.568090 GGTGTTTGCCTGATGCCG 59.432 61.111 0.00 0.00 40.16 5.69
70 71 2.268076 ACGGTGTTTGCCTGATGCC 61.268 57.895 0.00 0.00 40.16 4.40
71 72 1.081242 CACGGTGTTTGCCTGATGC 60.081 57.895 0.00 0.00 41.77 3.91
72 73 1.580942 CCACGGTGTTTGCCTGATG 59.419 57.895 7.45 0.00 0.00 3.07
73 74 2.268076 GCCACGGTGTTTGCCTGAT 61.268 57.895 7.45 0.00 0.00 2.90
74 75 2.046009 TAGCCACGGTGTTTGCCTGA 62.046 55.000 7.45 0.00 0.00 3.86
75 76 1.599518 TAGCCACGGTGTTTGCCTG 60.600 57.895 7.45 0.00 0.00 4.85
76 77 1.599797 GTAGCCACGGTGTTTGCCT 60.600 57.895 7.45 0.00 0.00 4.75
77 78 1.894756 TGTAGCCACGGTGTTTGCC 60.895 57.895 7.45 0.00 0.00 4.52
78 79 1.281656 GTGTAGCCACGGTGTTTGC 59.718 57.895 7.45 3.58 0.00 3.68
79 80 0.586319 CTGTGTAGCCACGGTGTTTG 59.414 55.000 7.45 0.00 44.92 2.93
80 81 0.534203 CCTGTGTAGCCACGGTGTTT 60.534 55.000 7.45 0.00 44.96 2.83
81 82 1.070786 CCTGTGTAGCCACGGTGTT 59.929 57.895 7.45 0.00 44.96 3.32
82 83 2.095978 GACCTGTGTAGCCACGGTGT 62.096 60.000 7.45 5.51 44.96 4.16
83 84 1.374252 GACCTGTGTAGCCACGGTG 60.374 63.158 11.91 0.00 44.96 4.94
84 85 2.927580 CGACCTGTGTAGCCACGGT 61.928 63.158 8.51 8.51 44.96 4.83
85 86 2.126071 CGACCTGTGTAGCCACGG 60.126 66.667 0.00 0.00 44.92 4.94
86 87 2.809601 GCGACCTGTGTAGCCACG 60.810 66.667 0.00 0.00 44.92 4.94
87 88 2.809601 CGCGACCTGTGTAGCCAC 60.810 66.667 0.00 0.00 39.65 5.01
88 89 2.986979 TCGCGACCTGTGTAGCCA 60.987 61.111 3.71 0.00 39.65 4.75
89 90 2.506438 GTCGCGACCTGTGTAGCC 60.506 66.667 28.61 0.00 39.65 3.93
90 91 2.791396 TTCGTCGCGACCTGTGTAGC 62.791 60.000 31.84 5.56 39.45 3.58
91 92 0.793478 CTTCGTCGCGACCTGTGTAG 60.793 60.000 31.84 17.07 34.89 2.74
92 93 1.208358 CTTCGTCGCGACCTGTGTA 59.792 57.895 31.84 11.79 34.89 2.90
93 94 2.050351 CTTCGTCGCGACCTGTGT 60.050 61.111 31.84 0.00 34.89 3.72
94 95 2.805353 CCTTCGTCGCGACCTGTG 60.805 66.667 31.84 18.60 34.89 3.66
95 96 3.292936 ACCTTCGTCGCGACCTGT 61.293 61.111 31.84 20.20 34.89 4.00
96 97 2.805353 CACCTTCGTCGCGACCTG 60.805 66.667 31.84 19.70 34.89 4.00
97 98 2.979197 CTCACCTTCGTCGCGACCT 61.979 63.158 31.84 7.86 34.89 3.85
98 99 2.267681 ATCTCACCTTCGTCGCGACC 62.268 60.000 31.84 15.31 34.89 4.79
99 100 0.862283 GATCTCACCTTCGTCGCGAC 60.862 60.000 28.96 28.96 34.89 5.19
100 101 1.428219 GATCTCACCTTCGTCGCGA 59.572 57.895 3.71 3.71 0.00 5.87
101 102 1.586564 GGATCTCACCTTCGTCGCG 60.587 63.158 0.00 0.00 0.00 5.87
102 103 0.108804 TTGGATCTCACCTTCGTCGC 60.109 55.000 0.00 0.00 0.00 5.19
103 104 2.099921 AGATTGGATCTCACCTTCGTCG 59.900 50.000 0.00 0.00 33.42 5.12
104 105 3.810310 AGATTGGATCTCACCTTCGTC 57.190 47.619 0.00 0.00 33.42 4.20
105 106 3.866651 CAAGATTGGATCTCACCTTCGT 58.133 45.455 0.00 0.00 39.08 3.85
119 120 1.645455 CGGAGATGCGCCAAGATTG 59.355 57.895 4.18 0.00 0.00 2.67
120 121 2.182842 GCGGAGATGCGCCAAGATT 61.183 57.895 4.18 0.00 0.00 2.40
121 122 2.590007 GCGGAGATGCGCCAAGAT 60.590 61.111 4.18 0.00 0.00 2.40
135 136 4.840005 GAGCTTTCCCTCCCGCGG 62.840 72.222 21.04 21.04 0.00 6.46
137 138 3.724914 CTCGAGCTTTCCCTCCCGC 62.725 68.421 0.00 0.00 0.00 6.13
138 139 2.352032 ACTCGAGCTTTCCCTCCCG 61.352 63.158 13.61 0.00 0.00 5.14
139 140 1.219393 CACTCGAGCTTTCCCTCCC 59.781 63.158 13.61 0.00 0.00 4.30
140 141 0.174617 CTCACTCGAGCTTTCCCTCC 59.825 60.000 13.61 0.00 31.00 4.30
141 142 0.174617 CCTCACTCGAGCTTTCCCTC 59.825 60.000 13.61 0.00 38.00 4.30
142 143 0.251832 TCCTCACTCGAGCTTTCCCT 60.252 55.000 13.61 0.00 38.00 4.20
143 144 0.174617 CTCCTCACTCGAGCTTTCCC 59.825 60.000 13.61 0.00 38.00 3.97
144 145 0.174617 CCTCCTCACTCGAGCTTTCC 59.825 60.000 13.61 0.00 38.00 3.13
145 146 1.178276 TCCTCCTCACTCGAGCTTTC 58.822 55.000 13.61 0.00 38.00 2.62
146 147 1.548269 CTTCCTCCTCACTCGAGCTTT 59.452 52.381 13.61 0.00 38.00 3.51
147 148 1.181786 CTTCCTCCTCACTCGAGCTT 58.818 55.000 13.61 0.00 38.00 3.74
148 149 0.682855 CCTTCCTCCTCACTCGAGCT 60.683 60.000 13.61 0.00 38.00 4.09
149 150 0.681564 TCCTTCCTCCTCACTCGAGC 60.682 60.000 13.61 0.00 38.00 5.03
150 151 1.748493 CTTCCTTCCTCCTCACTCGAG 59.252 57.143 11.84 11.84 39.16 4.04
151 152 1.617263 CCTTCCTTCCTCCTCACTCGA 60.617 57.143 0.00 0.00 0.00 4.04
152 153 0.820871 CCTTCCTTCCTCCTCACTCG 59.179 60.000 0.00 0.00 0.00 4.18
153 154 1.199615 CCCTTCCTTCCTCCTCACTC 58.800 60.000 0.00 0.00 0.00 3.51
154 155 0.252927 CCCCTTCCTTCCTCCTCACT 60.253 60.000 0.00 0.00 0.00 3.41
155 156 0.252742 TCCCCTTCCTTCCTCCTCAC 60.253 60.000 0.00 0.00 0.00 3.51
156 157 0.043334 CTCCCCTTCCTTCCTCCTCA 59.957 60.000 0.00 0.00 0.00 3.86
157 158 1.341913 GCTCCCCTTCCTTCCTCCTC 61.342 65.000 0.00 0.00 0.00 3.71
158 159 1.307430 GCTCCCCTTCCTTCCTCCT 60.307 63.158 0.00 0.00 0.00 3.69
159 160 2.736826 CGCTCCCCTTCCTTCCTCC 61.737 68.421 0.00 0.00 0.00 4.30
160 161 1.265454 TTCGCTCCCCTTCCTTCCTC 61.265 60.000 0.00 0.00 0.00 3.71
161 162 1.229529 TTCGCTCCCCTTCCTTCCT 60.230 57.895 0.00 0.00 0.00 3.36
162 163 1.222113 CTTCGCTCCCCTTCCTTCC 59.778 63.158 0.00 0.00 0.00 3.46
163 164 1.222113 CCTTCGCTCCCCTTCCTTC 59.778 63.158 0.00 0.00 0.00 3.46
164 165 1.134438 AACCTTCGCTCCCCTTCCTT 61.134 55.000 0.00 0.00 0.00 3.36
165 166 1.539124 AACCTTCGCTCCCCTTCCT 60.539 57.895 0.00 0.00 0.00 3.36
166 167 1.377333 CAACCTTCGCTCCCCTTCC 60.377 63.158 0.00 0.00 0.00 3.46
167 168 2.041115 GCAACCTTCGCTCCCCTTC 61.041 63.158 0.00 0.00 0.00 3.46
168 169 2.034221 GCAACCTTCGCTCCCCTT 59.966 61.111 0.00 0.00 0.00 3.95
169 170 4.394712 CGCAACCTTCGCTCCCCT 62.395 66.667 0.00 0.00 0.00 4.79
226 227 3.157949 CTTCCCTCCTCCCTCGCC 61.158 72.222 0.00 0.00 0.00 5.54
227 228 2.364448 ACTTCCCTCCTCCCTCGC 60.364 66.667 0.00 0.00 0.00 5.03
228 229 2.060980 CCACTTCCCTCCTCCCTCG 61.061 68.421 0.00 0.00 0.00 4.63
229 230 1.690985 CCCACTTCCCTCCTCCCTC 60.691 68.421 0.00 0.00 0.00 4.30
230 231 2.456840 CCCACTTCCCTCCTCCCT 59.543 66.667 0.00 0.00 0.00 4.20
231 232 2.692741 CCCCACTTCCCTCCTCCC 60.693 72.222 0.00 0.00 0.00 4.30
232 233 2.692741 CCCCCACTTCCCTCCTCC 60.693 72.222 0.00 0.00 0.00 4.30
233 234 2.125225 ACCCCCACTTCCCTCCTC 59.875 66.667 0.00 0.00 0.00 3.71
234 235 2.204151 CACCCCCACTTCCCTCCT 60.204 66.667 0.00 0.00 0.00 3.69
235 236 3.339093 CCACCCCCACTTCCCTCC 61.339 72.222 0.00 0.00 0.00 4.30
236 237 3.339093 CCCACCCCCACTTCCCTC 61.339 72.222 0.00 0.00 0.00 4.30
240 241 4.366684 CAGGCCCACCCCCACTTC 62.367 72.222 0.00 0.00 36.11 3.01
241 242 4.938756 TCAGGCCCACCCCCACTT 62.939 66.667 0.00 0.00 36.11 3.16
249 250 3.665675 CTAGCACCGTCAGGCCCAC 62.666 68.421 0.00 0.00 42.76 4.61
250 251 3.390521 CTAGCACCGTCAGGCCCA 61.391 66.667 0.00 0.00 42.76 5.36
251 252 4.162690 CCTAGCACCGTCAGGCCC 62.163 72.222 0.00 0.00 42.76 5.80
252 253 2.465055 AAACCTAGCACCGTCAGGCC 62.465 60.000 0.00 0.00 42.76 5.19
253 254 0.605589 AAAACCTAGCACCGTCAGGC 60.606 55.000 0.00 0.00 42.76 4.85
254 255 1.156736 CAAAACCTAGCACCGTCAGG 58.843 55.000 0.00 0.00 45.13 3.86
255 256 1.156736 CCAAAACCTAGCACCGTCAG 58.843 55.000 0.00 0.00 0.00 3.51
256 257 0.887387 GCCAAAACCTAGCACCGTCA 60.887 55.000 0.00 0.00 0.00 4.35
257 258 0.605589 AGCCAAAACCTAGCACCGTC 60.606 55.000 0.00 0.00 0.00 4.79
258 259 0.605589 GAGCCAAAACCTAGCACCGT 60.606 55.000 0.00 0.00 0.00 4.83
259 260 1.305930 GGAGCCAAAACCTAGCACCG 61.306 60.000 0.00 0.00 0.00 4.94
260 261 0.965866 GGGAGCCAAAACCTAGCACC 60.966 60.000 0.00 0.00 36.63 5.01
261 262 0.965866 GGGGAGCCAAAACCTAGCAC 60.966 60.000 0.00 0.00 0.00 4.40
262 263 1.382629 GGGGAGCCAAAACCTAGCA 59.617 57.895 0.00 0.00 0.00 3.49
263 264 1.379977 GGGGGAGCCAAAACCTAGC 60.380 63.158 0.00 0.00 0.00 3.42
264 265 1.077716 CGGGGGAGCCAAAACCTAG 60.078 63.158 0.00 0.00 0.00 3.02
265 266 1.539372 TCGGGGGAGCCAAAACCTA 60.539 57.895 0.00 0.00 0.00 3.08
266 267 2.856988 TCGGGGGAGCCAAAACCT 60.857 61.111 0.00 0.00 0.00 3.50
267 268 2.361230 CTCGGGGGAGCCAAAACC 60.361 66.667 0.00 0.00 0.00 3.27
268 269 1.674651 GACTCGGGGGAGCCAAAAC 60.675 63.158 0.00 0.00 0.00 2.43
269 270 2.754375 GACTCGGGGGAGCCAAAA 59.246 61.111 0.00 0.00 0.00 2.44
270 271 3.702048 CGACTCGGGGGAGCCAAA 61.702 66.667 0.00 0.00 0.00 3.28
511 512 4.340950 TGGTTTCTGAATGGTTTGAGGAAC 59.659 41.667 0.00 0.00 34.73 3.62
512 513 4.541705 TGGTTTCTGAATGGTTTGAGGAA 58.458 39.130 0.00 0.00 0.00 3.36
513 514 4.177537 TGGTTTCTGAATGGTTTGAGGA 57.822 40.909 0.00 0.00 0.00 3.71
514 515 4.620982 GTTGGTTTCTGAATGGTTTGAGG 58.379 43.478 0.00 0.00 0.00 3.86
515 516 4.036262 TCGTTGGTTTCTGAATGGTTTGAG 59.964 41.667 0.00 0.00 0.00 3.02
516 517 3.948473 TCGTTGGTTTCTGAATGGTTTGA 59.052 39.130 0.00 0.00 0.00 2.69
517 518 4.300189 TCGTTGGTTTCTGAATGGTTTG 57.700 40.909 0.00 0.00 0.00 2.93
518 519 4.993029 TTCGTTGGTTTCTGAATGGTTT 57.007 36.364 0.00 0.00 0.00 3.27
519 520 4.993029 TTTCGTTGGTTTCTGAATGGTT 57.007 36.364 0.00 0.00 0.00 3.67
520 521 4.993029 TTTTCGTTGGTTTCTGAATGGT 57.007 36.364 0.00 0.00 0.00 3.55
521 522 5.772521 AGATTTTCGTTGGTTTCTGAATGG 58.227 37.500 0.00 0.00 0.00 3.16
522 523 6.524586 GCTAGATTTTCGTTGGTTTCTGAATG 59.475 38.462 0.00 0.00 0.00 2.67
523 524 6.431234 AGCTAGATTTTCGTTGGTTTCTGAAT 59.569 34.615 0.00 0.00 0.00 2.57
524 525 5.763204 AGCTAGATTTTCGTTGGTTTCTGAA 59.237 36.000 0.00 0.00 0.00 3.02
525 526 5.305585 AGCTAGATTTTCGTTGGTTTCTGA 58.694 37.500 0.00 0.00 0.00 3.27
526 527 5.613358 AGCTAGATTTTCGTTGGTTTCTG 57.387 39.130 0.00 0.00 0.00 3.02
527 528 7.444487 AGTTTAGCTAGATTTTCGTTGGTTTCT 59.556 33.333 0.00 0.00 0.00 2.52
528 529 7.582352 AGTTTAGCTAGATTTTCGTTGGTTTC 58.418 34.615 0.00 0.00 0.00 2.78
529 530 7.506328 AGTTTAGCTAGATTTTCGTTGGTTT 57.494 32.000 0.00 0.00 0.00 3.27
530 531 6.128634 CGAGTTTAGCTAGATTTTCGTTGGTT 60.129 38.462 0.00 0.00 0.00 3.67
531 532 5.347907 CGAGTTTAGCTAGATTTTCGTTGGT 59.652 40.000 0.00 0.00 0.00 3.67
532 533 5.724223 GCGAGTTTAGCTAGATTTTCGTTGG 60.724 44.000 13.39 0.00 0.00 3.77
533 534 5.163992 TGCGAGTTTAGCTAGATTTTCGTTG 60.164 40.000 13.39 0.00 35.28 4.10
534 535 4.927425 TGCGAGTTTAGCTAGATTTTCGTT 59.073 37.500 13.39 0.00 35.28 3.85
535 536 4.491676 TGCGAGTTTAGCTAGATTTTCGT 58.508 39.130 13.39 0.00 35.28 3.85
536 537 5.450376 TTGCGAGTTTAGCTAGATTTTCG 57.550 39.130 0.00 9.79 35.28 3.46
537 538 7.532209 GCATATTGCGAGTTTAGCTAGATTTTC 59.468 37.037 0.00 0.00 31.71 2.29
538 539 7.355778 GCATATTGCGAGTTTAGCTAGATTTT 58.644 34.615 0.00 0.00 31.71 1.82
539 540 6.892691 GCATATTGCGAGTTTAGCTAGATTT 58.107 36.000 0.00 0.00 31.71 2.17
540 541 6.473397 GCATATTGCGAGTTTAGCTAGATT 57.527 37.500 0.00 0.00 31.71 2.40
573 574 2.559698 TCGCCTCCACATCTCAAAAA 57.440 45.000 0.00 0.00 0.00 1.94
574 575 2.787473 ATCGCCTCCACATCTCAAAA 57.213 45.000 0.00 0.00 0.00 2.44
575 576 2.787473 AATCGCCTCCACATCTCAAA 57.213 45.000 0.00 0.00 0.00 2.69
576 577 2.749076 CAAAATCGCCTCCACATCTCAA 59.251 45.455 0.00 0.00 0.00 3.02
577 578 2.358957 CAAAATCGCCTCCACATCTCA 58.641 47.619 0.00 0.00 0.00 3.27
578 579 1.064654 GCAAAATCGCCTCCACATCTC 59.935 52.381 0.00 0.00 0.00 2.75
579 580 1.098050 GCAAAATCGCCTCCACATCT 58.902 50.000 0.00 0.00 0.00 2.90
580 581 3.629858 GCAAAATCGCCTCCACATC 57.370 52.632 0.00 0.00 0.00 3.06
656 658 1.448013 GGGCGGTTGCTAGAGTCAC 60.448 63.158 0.00 0.00 42.25 3.67
664 666 3.714487 AAGTGTGTGGGCGGTTGCT 62.714 57.895 0.00 0.00 42.25 3.91
674 676 2.076863 GGGGAGAAATCGAAGTGTGTG 58.923 52.381 0.00 0.00 0.00 3.82
684 686 3.670105 TGCCACAAGGGGAGAAATC 57.330 52.632 0.00 0.00 37.04 2.17
740 750 3.433456 CCCCAAATTTATTCATGCACCCC 60.433 47.826 0.00 0.00 0.00 4.95
755 765 7.158697 GCAAAGTGTTTCTAATAACCCCAAAT 58.841 34.615 0.00 0.00 0.00 2.32
756 766 6.463190 GGCAAAGTGTTTCTAATAACCCCAAA 60.463 38.462 0.00 0.00 0.00 3.28
795 805 3.585862 GCATAACTGAACTCGTTGGAGA 58.414 45.455 0.00 0.00 43.27 3.71
808 818 3.560068 GGGGAAGTTGTATCGCATAACTG 59.440 47.826 0.00 0.00 38.47 3.16
814 824 3.985019 TTTAGGGGAAGTTGTATCGCA 57.015 42.857 0.00 0.00 0.00 5.10
850 860 2.611225 ACAAAGATTGCCCGCAAAAA 57.389 40.000 6.16 0.00 39.55 1.94
851 861 2.611225 AACAAAGATTGCCCGCAAAA 57.389 40.000 6.16 0.00 39.55 2.44
852 862 3.256879 TCATAACAAAGATTGCCCGCAAA 59.743 39.130 6.16 0.00 39.55 3.68
853 863 2.822561 TCATAACAAAGATTGCCCGCAA 59.177 40.909 4.31 4.31 40.47 4.85
854 864 2.441410 TCATAACAAAGATTGCCCGCA 58.559 42.857 0.00 0.00 0.00 5.69
855 865 3.502191 TTCATAACAAAGATTGCCCGC 57.498 42.857 0.00 0.00 0.00 6.13
856 866 6.966435 AAATTTCATAACAAAGATTGCCCG 57.034 33.333 0.00 0.00 0.00 6.13
915 931 9.300681 TCATGTTTGAGAAAAGAAATATGACCT 57.699 29.630 0.00 0.00 35.80 3.85
949 1215 8.807581 CCTGAAGAACTGTTTGACAAAAATAAC 58.192 33.333 1.27 0.00 0.00 1.89
952 1218 5.812127 GCCTGAAGAACTGTTTGACAAAAAT 59.188 36.000 1.27 0.00 0.00 1.82
988 1254 2.103263 GTCGAGGCATCCTAAATCCTGT 59.897 50.000 0.00 0.00 31.76 4.00
1018 1284 3.790091 TCAAGATCGAAGATGCTTCTGG 58.210 45.455 2.39 0.00 45.12 3.86
1033 1299 3.952931 ACTCTGCTGCAATTCTCAAGAT 58.047 40.909 3.02 0.00 0.00 2.40
1120 1386 7.341805 CAATATAAGAAGGTGGGCATATAGCT 58.658 38.462 0.00 0.00 44.79 3.32
1156 1422 1.439228 CATCTCCGAGACACCGCAT 59.561 57.895 0.00 0.00 0.00 4.73
1157 1423 2.885113 CATCTCCGAGACACCGCA 59.115 61.111 0.00 0.00 0.00 5.69
1174 1440 1.188863 AGGTTCCATGCCATGAAAGC 58.811 50.000 6.18 1.22 0.00 3.51
1212 1478 2.023673 GCCATGGGTGAATCGATTTCA 58.976 47.619 15.13 8.92 42.09 2.69
1213 1479 1.002468 CGCCATGGGTGAATCGATTTC 60.002 52.381 15.13 8.70 34.74 2.17
1271 1537 5.508200 TGCGGTTTTGAGAAATTGTTAGT 57.492 34.783 0.00 0.00 0.00 2.24
1272 1538 5.174943 GGTTGCGGTTTTGAGAAATTGTTAG 59.825 40.000 0.00 0.00 0.00 2.34
1278 1544 3.810310 TTGGTTGCGGTTTTGAGAAAT 57.190 38.095 0.00 0.00 0.00 2.17
1279 1545 3.594603 TTTGGTTGCGGTTTTGAGAAA 57.405 38.095 0.00 0.00 0.00 2.52
1280 1546 3.810310 ATTTGGTTGCGGTTTTGAGAA 57.190 38.095 0.00 0.00 0.00 2.87
1281 1547 3.118956 ACAATTTGGTTGCGGTTTTGAGA 60.119 39.130 0.78 0.00 41.69 3.27
1297 1563 4.032960 TGGATGGAGTGCTACACAATTT 57.967 40.909 0.00 0.00 36.74 1.82
1298 1564 3.719268 TGGATGGAGTGCTACACAATT 57.281 42.857 0.00 0.00 36.74 2.32
1299 1565 3.939740 ATGGATGGAGTGCTACACAAT 57.060 42.857 0.00 0.00 36.74 2.71
1300 1566 3.264193 AGAATGGATGGAGTGCTACACAA 59.736 43.478 0.00 0.00 36.74 3.33
1301 1567 2.840038 AGAATGGATGGAGTGCTACACA 59.160 45.455 0.00 0.00 36.74 3.72
1302 1568 3.550437 AGAATGGATGGAGTGCTACAC 57.450 47.619 0.00 0.00 34.10 2.90
1303 1569 5.189736 ACTTTAGAATGGATGGAGTGCTACA 59.810 40.000 0.00 0.00 0.00 2.74
1304 1570 5.675538 ACTTTAGAATGGATGGAGTGCTAC 58.324 41.667 0.00 0.00 0.00 3.58
1305 1571 5.957771 ACTTTAGAATGGATGGAGTGCTA 57.042 39.130 0.00 0.00 0.00 3.49
1306 1572 4.851639 ACTTTAGAATGGATGGAGTGCT 57.148 40.909 0.00 0.00 0.00 4.40
1307 1573 7.283127 TCATTTACTTTAGAATGGATGGAGTGC 59.717 37.037 0.00 0.00 34.74 4.40
1308 1574 8.737168 TCATTTACTTTAGAATGGATGGAGTG 57.263 34.615 0.00 0.00 34.74 3.51
1309 1575 9.401058 CTTCATTTACTTTAGAATGGATGGAGT 57.599 33.333 0.00 0.00 34.74 3.85
1310 1576 9.401058 ACTTCATTTACTTTAGAATGGATGGAG 57.599 33.333 0.00 0.00 34.74 3.86
1311 1577 9.753674 AACTTCATTTACTTTAGAATGGATGGA 57.246 29.630 0.00 0.00 34.74 3.41
1361 1627 8.198109 TGCTTACTTGCCAGTTAAAATTAAACA 58.802 29.630 0.00 0.00 34.06 2.83
1365 1631 9.601217 TTTTTGCTTACTTGCCAGTTAAAATTA 57.399 25.926 0.00 0.00 34.06 1.40
1373 1639 4.887655 ACTAGTTTTTGCTTACTTGCCAGT 59.112 37.500 0.00 0.00 36.99 4.00
1374 1640 5.438761 ACTAGTTTTTGCTTACTTGCCAG 57.561 39.130 0.00 0.00 0.00 4.85
1375 1641 6.945938 TTACTAGTTTTTGCTTACTTGCCA 57.054 33.333 0.00 0.00 0.00 4.92
1376 1642 8.699749 CATTTTACTAGTTTTTGCTTACTTGCC 58.300 33.333 0.00 0.00 0.00 4.52
1377 1643 9.244799 ACATTTTACTAGTTTTTGCTTACTTGC 57.755 29.630 0.00 0.00 0.00 4.01
1379 1645 9.961265 GGACATTTTACTAGTTTTTGCTTACTT 57.039 29.630 0.00 0.00 0.00 2.24
1380 1646 8.287503 CGGACATTTTACTAGTTTTTGCTTACT 58.712 33.333 0.00 0.00 0.00 2.24
1381 1647 8.071967 ACGGACATTTTACTAGTTTTTGCTTAC 58.928 33.333 0.00 0.00 0.00 2.34
1382 1648 8.071368 CACGGACATTTTACTAGTTTTTGCTTA 58.929 33.333 0.00 0.00 0.00 3.09
1383 1649 6.915843 CACGGACATTTTACTAGTTTTTGCTT 59.084 34.615 0.00 0.00 0.00 3.91
1384 1650 6.435428 CACGGACATTTTACTAGTTTTTGCT 58.565 36.000 0.00 0.00 0.00 3.91
1385 1651 5.116528 GCACGGACATTTTACTAGTTTTTGC 59.883 40.000 0.00 0.00 0.00 3.68
1386 1652 6.435428 AGCACGGACATTTTACTAGTTTTTG 58.565 36.000 0.00 0.00 0.00 2.44
1387 1653 6.628919 AGCACGGACATTTTACTAGTTTTT 57.371 33.333 0.00 0.00 0.00 1.94
1388 1654 7.625606 GCATAGCACGGACATTTTACTAGTTTT 60.626 37.037 0.00 0.00 0.00 2.43
1399 1665 1.852942 CGTAGCATAGCACGGACATT 58.147 50.000 0.00 0.00 32.64 2.71
1420 1686 5.296283 CACCTGATCTCCAATCTTTGTGATC 59.704 44.000 0.00 10.73 38.28 2.92
1432 1698 4.371624 ACAATGTTTCACCTGATCTCCA 57.628 40.909 0.00 0.00 0.00 3.86
1459 1725 3.954904 GCAACATAGACTCCTCCTCACTA 59.045 47.826 0.00 0.00 0.00 2.74
1460 1726 2.763448 GCAACATAGACTCCTCCTCACT 59.237 50.000 0.00 0.00 0.00 3.41
1461 1727 2.763448 AGCAACATAGACTCCTCCTCAC 59.237 50.000 0.00 0.00 0.00 3.51
1462 1728 3.107402 AGCAACATAGACTCCTCCTCA 57.893 47.619 0.00 0.00 0.00 3.86
1463 1729 3.954904 TGTAGCAACATAGACTCCTCCTC 59.045 47.826 0.00 0.00 0.00 3.71
1464 1730 3.982516 TGTAGCAACATAGACTCCTCCT 58.017 45.455 0.00 0.00 0.00 3.69
1465 1731 4.081642 TGTTGTAGCAACATAGACTCCTCC 60.082 45.833 10.22 0.00 34.97 4.30
1500 1766 8.339344 ACATCATTTGATCAATGTCTTGTACA 57.661 30.769 9.40 0.00 42.79 2.90
1566 1856 2.161609 GGTCATTGTTTAGCTTGGACCG 59.838 50.000 0.00 0.00 34.64 4.79
1567 1857 3.153919 TGGTCATTGTTTAGCTTGGACC 58.846 45.455 0.00 0.00 42.75 4.46
1611 1901 1.431488 CCAGTCGCCCATGTTCATCG 61.431 60.000 0.00 0.00 0.00 3.84
1624 1914 2.034305 CCTACGGAATTAGGACCAGTCG 59.966 54.545 0.00 0.00 41.29 4.18
1625 1915 2.364647 CCCTACGGAATTAGGACCAGTC 59.635 54.545 0.00 0.00 41.29 3.51
1633 1923 1.485066 AGGCACACCCTACGGAATTAG 59.515 52.381 0.00 0.00 44.08 1.73
1640 1930 0.034896 AAACTCAGGCACACCCTACG 59.965 55.000 0.00 0.00 44.09 3.51
1703 1993 1.535028 TGTTTGGCAGATGTAGCAACG 59.465 47.619 0.00 0.00 0.00 4.10
1714 2004 2.823984 TCACATGCTTTTGTTTGGCAG 58.176 42.857 0.00 0.00 39.38 4.85
1738 2029 6.309980 GCTCATAAGTGTATGCATGTAGCTAG 59.690 42.308 10.16 0.00 45.94 3.42
1740 2983 4.993584 GCTCATAAGTGTATGCATGTAGCT 59.006 41.667 10.16 0.00 45.94 3.32
1760 3634 5.350633 TGCTATGCACCATTTAAAATGCTC 58.649 37.500 17.98 9.14 38.90 4.26
1763 3637 6.919662 CCTACTGCTATGCACCATTTAAAATG 59.080 38.462 0.00 0.00 33.79 2.32
1779 3653 0.546747 ACCAGGTTGCCCTACTGCTA 60.547 55.000 0.00 0.00 39.89 3.49
1785 3659 1.001020 CATGCACCAGGTTGCCCTA 60.001 57.895 10.46 0.00 42.25 3.53
1786 3660 1.788518 TACATGCACCAGGTTGCCCT 61.789 55.000 10.46 0.00 42.25 5.19
1787 3661 1.304052 TACATGCACCAGGTTGCCC 60.304 57.895 10.46 0.00 42.25 5.36
1789 3663 0.962356 AGCTACATGCACCAGGTTGC 60.962 55.000 8.03 8.03 44.17 4.17
1790 3664 1.089920 GAGCTACATGCACCAGGTTG 58.910 55.000 0.00 0.00 45.94 3.77
1791 3665 3.558674 GAGCTACATGCACCAGGTT 57.441 52.632 0.00 0.00 45.94 3.50
1816 3690 4.785453 CTTCCCTGGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
1817 3691 4.101448 CCTTCCCTGGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
1818 3692 3.732849 CCCTTCCCTGGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
1819 3693 2.204151 ACCCTTCCCTGGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
1820 3694 2.125225 GACCCTTCCCTGGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
1821 3695 3.015753 GGACCCTTCCCTGGACCC 61.016 72.222 0.00 0.00 35.57 4.46
1822 3696 3.400054 CGGACCCTTCCCTGGACC 61.400 72.222 0.00 0.00 38.99 4.46
1823 3697 2.284405 TCGGACCCTTCCCTGGAC 60.284 66.667 0.00 0.00 38.99 4.02
1824 3698 2.284405 GTCGGACCCTTCCCTGGA 60.284 66.667 0.00 0.00 38.99 3.86
1825 3699 3.400054 GGTCGGACCCTTCCCTGG 61.400 72.222 16.55 0.00 38.99 4.45
1826 3700 2.606519 TGGTCGGACCCTTCCCTG 60.607 66.667 23.81 0.00 38.99 4.45
1827 3701 2.606826 GTGGTCGGACCCTTCCCT 60.607 66.667 23.81 0.00 38.99 4.20
1828 3702 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
1829 3703 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
1830 3704 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
1831 3705 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
1832 3706 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
1833 3707 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
1834 3708 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
1835 3709 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
1840 3714 3.131755 GCGTACTATAGACCCAAAGTGGT 59.868 47.826 6.78 0.00 42.79 4.16
1841 3715 3.131577 TGCGTACTATAGACCCAAAGTGG 59.868 47.826 6.78 0.00 37.25 4.00
1842 3716 4.360563 CTGCGTACTATAGACCCAAAGTG 58.639 47.826 6.78 0.00 0.00 3.16
1843 3717 3.181478 GCTGCGTACTATAGACCCAAAGT 60.181 47.826 6.78 0.00 0.00 2.66
1844 3718 3.381949 GCTGCGTACTATAGACCCAAAG 58.618 50.000 6.78 0.00 0.00 2.77
1845 3719 2.101917 GGCTGCGTACTATAGACCCAAA 59.898 50.000 6.78 0.00 0.00 3.28
1846 3720 1.684983 GGCTGCGTACTATAGACCCAA 59.315 52.381 6.78 0.00 0.00 4.12
1847 3721 1.133575 AGGCTGCGTACTATAGACCCA 60.134 52.381 6.78 0.00 0.00 4.51
1848 3722 1.618487 AGGCTGCGTACTATAGACCC 58.382 55.000 6.78 0.00 0.00 4.46
1849 3723 3.552478 GGAAAGGCTGCGTACTATAGACC 60.552 52.174 6.78 0.00 0.00 3.85
1850 3724 3.552478 GGGAAAGGCTGCGTACTATAGAC 60.552 52.174 6.78 0.00 0.00 2.59
1851 3725 2.626743 GGGAAAGGCTGCGTACTATAGA 59.373 50.000 6.78 0.00 0.00 1.98
1852 3726 2.628657 AGGGAAAGGCTGCGTACTATAG 59.371 50.000 0.00 0.00 0.00 1.31
1853 3727 2.674420 AGGGAAAGGCTGCGTACTATA 58.326 47.619 0.00 0.00 0.00 1.31
1854 3728 1.497161 AGGGAAAGGCTGCGTACTAT 58.503 50.000 0.00 0.00 0.00 2.12
1855 3729 1.753073 GTAGGGAAAGGCTGCGTACTA 59.247 52.381 0.00 0.00 34.81 1.82
1856 3730 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.000 0.00 0.00 34.81 2.73
1857 3731 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
1858 3732 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
1859 3733 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
1860 3734 1.463674 AAATGTAGGGAAAGGCTGCG 58.536 50.000 0.00 0.00 0.00 5.18
1861 3735 5.400066 TTTAAAATGTAGGGAAAGGCTGC 57.600 39.130 0.00 0.00 0.00 5.25
1862 3736 6.070824 ACCATTTAAAATGTAGGGAAAGGCTG 60.071 38.462 0.00 0.00 0.00 4.85
1863 3737 6.022958 ACCATTTAAAATGTAGGGAAAGGCT 58.977 36.000 0.00 0.00 0.00 4.58
1864 3738 6.106003 CACCATTTAAAATGTAGGGAAAGGC 58.894 40.000 0.00 0.00 0.00 4.35
1865 3739 6.106003 GCACCATTTAAAATGTAGGGAAAGG 58.894 40.000 0.00 0.00 0.00 3.11
1866 3740 6.696411 TGCACCATTTAAAATGTAGGGAAAG 58.304 36.000 0.00 0.00 0.00 2.62
1867 3741 6.672266 TGCACCATTTAAAATGTAGGGAAA 57.328 33.333 0.00 0.00 0.00 3.13
1868 3742 6.865834 ATGCACCATTTAAAATGTAGGGAA 57.134 33.333 0.00 0.00 0.00 3.97
1869 3743 6.040391 GCTATGCACCATTTAAAATGTAGGGA 59.960 38.462 0.00 0.00 0.00 4.20
1870 3744 6.183360 TGCTATGCACCATTTAAAATGTAGGG 60.183 38.462 0.00 0.00 31.71 3.53
1871 3745 6.804677 TGCTATGCACCATTTAAAATGTAGG 58.195 36.000 0.00 0.00 31.71 3.18
1872 3746 7.483307 ACTGCTATGCACCATTTAAAATGTAG 58.517 34.615 0.00 0.00 33.79 2.74
1873 3747 7.403312 ACTGCTATGCACCATTTAAAATGTA 57.597 32.000 0.00 0.00 33.79 2.29
1874 3748 6.284891 ACTGCTATGCACCATTTAAAATGT 57.715 33.333 0.00 0.00 33.79 2.71
1875 3749 7.433131 CAGTACTGCTATGCACCATTTAAAATG 59.567 37.037 10.54 0.00 33.79 2.32
1876 3750 7.339212 TCAGTACTGCTATGCACCATTTAAAAT 59.661 33.333 18.45 0.00 33.79 1.82
1877 3751 6.657117 TCAGTACTGCTATGCACCATTTAAAA 59.343 34.615 18.45 0.00 33.79 1.52
1878 3752 6.093495 GTCAGTACTGCTATGCACCATTTAAA 59.907 38.462 18.45 0.00 33.79 1.52
1879 3753 5.584649 GTCAGTACTGCTATGCACCATTTAA 59.415 40.000 18.45 0.00 33.79 1.52
1880 3754 5.116180 GTCAGTACTGCTATGCACCATTTA 58.884 41.667 18.45 0.00 33.79 1.40
1881 3755 3.941483 GTCAGTACTGCTATGCACCATTT 59.059 43.478 18.45 0.00 33.79 2.32
1882 3756 3.535561 GTCAGTACTGCTATGCACCATT 58.464 45.455 18.45 0.00 33.79 3.16
1883 3757 2.158900 GGTCAGTACTGCTATGCACCAT 60.159 50.000 18.45 0.00 33.79 3.55
1884 3758 1.207089 GGTCAGTACTGCTATGCACCA 59.793 52.381 18.45 0.00 33.79 4.17
1885 3759 1.482593 AGGTCAGTACTGCTATGCACC 59.517 52.381 18.45 17.81 33.79 5.01
1886 3760 2.969628 AGGTCAGTACTGCTATGCAC 57.030 50.000 18.45 9.59 33.79 4.57
1887 3761 5.414789 TTTTAGGTCAGTACTGCTATGCA 57.585 39.130 18.45 0.00 36.92 3.96
1888 3762 6.049149 TCATTTTAGGTCAGTACTGCTATGC 58.951 40.000 18.45 5.51 0.00 3.14
1889 3763 8.492673 TTTCATTTTAGGTCAGTACTGCTATG 57.507 34.615 18.45 10.65 0.00 2.23
1890 3764 9.167311 CTTTTCATTTTAGGTCAGTACTGCTAT 57.833 33.333 18.45 8.22 0.00 2.97
1891 3765 7.119262 GCTTTTCATTTTAGGTCAGTACTGCTA 59.881 37.037 18.45 11.56 0.00 3.49
1892 3766 6.072452 GCTTTTCATTTTAGGTCAGTACTGCT 60.072 38.462 18.45 12.56 0.00 4.24
1893 3767 6.072452 AGCTTTTCATTTTAGGTCAGTACTGC 60.072 38.462 18.45 12.70 0.00 4.40
1894 3768 7.440523 AGCTTTTCATTTTAGGTCAGTACTG 57.559 36.000 17.17 17.17 0.00 2.74
1895 3769 7.939588 AGAAGCTTTTCATTTTAGGTCAGTACT 59.060 33.333 0.00 0.00 0.00 2.73
1896 3770 8.100508 AGAAGCTTTTCATTTTAGGTCAGTAC 57.899 34.615 0.00 0.00 0.00 2.73
1897 3771 9.787435 TTAGAAGCTTTTCATTTTAGGTCAGTA 57.213 29.630 0.00 0.00 0.00 2.74
1898 3772 8.568794 GTTAGAAGCTTTTCATTTTAGGTCAGT 58.431 33.333 0.00 0.00 0.00 3.41
1899 3773 8.023706 GGTTAGAAGCTTTTCATTTTAGGTCAG 58.976 37.037 0.00 0.00 0.00 3.51
1900 3774 7.039993 GGGTTAGAAGCTTTTCATTTTAGGTCA 60.040 37.037 0.00 0.00 0.00 4.02
1901 3775 7.313646 GGGTTAGAAGCTTTTCATTTTAGGTC 58.686 38.462 0.00 0.00 0.00 3.85
1915 3789 2.393646 CTCTGCTAGGGGTTAGAAGCT 58.606 52.381 0.00 0.00 35.28 3.74
1939 3813 7.200455 AGAAGGATTTTCTTTTGGTTGTTACG 58.800 34.615 0.00 0.00 0.00 3.18
1987 3861 6.073447 TGATAACCCTTTGCTTATTCCTCA 57.927 37.500 0.00 0.00 0.00 3.86
2096 3975 5.046591 TGTTGAGGAGGAAGTATTTCATCGT 60.047 40.000 7.43 7.43 43.27 3.73
2161 4040 4.408821 TCGGGCCGCTCAAATGCT 62.409 61.111 23.83 0.00 0.00 3.79
2162 4041 4.179579 GTCGGGCCGCTCAAATGC 62.180 66.667 23.83 0.00 0.00 3.56
2163 4042 2.051804 GATGTCGGGCCGCTCAAATG 62.052 60.000 23.83 0.00 0.00 2.32
2164 4043 1.819632 GATGTCGGGCCGCTCAAAT 60.820 57.895 23.83 4.44 0.00 2.32
2165 4044 2.435938 GATGTCGGGCCGCTCAAA 60.436 61.111 23.83 0.00 0.00 2.69
2166 4045 4.467084 GGATGTCGGGCCGCTCAA 62.467 66.667 23.83 6.60 0.00 3.02
2168 4047 4.162690 AAGGATGTCGGGCCGCTC 62.163 66.667 23.83 17.03 0.00 5.03
2169 4048 4.162690 GAAGGATGTCGGGCCGCT 62.163 66.667 23.83 9.43 0.00 5.52
2170 4049 3.757248 ATGAAGGATGTCGGGCCGC 62.757 63.158 23.83 17.23 0.00 6.53
2171 4050 1.889105 CATGAAGGATGTCGGGCCG 60.889 63.158 22.51 22.51 0.00 6.13
2172 4051 2.189499 GCATGAAGGATGTCGGGCC 61.189 63.158 0.00 0.00 34.14 5.80
2173 4052 0.820891 ATGCATGAAGGATGTCGGGC 60.821 55.000 0.00 0.00 34.14 6.13
2174 4053 2.549064 TATGCATGAAGGATGTCGGG 57.451 50.000 10.16 0.00 34.14 5.14
2201 4080 9.363763 CTCATTCTTCTCGTTGTGCATATATAT 57.636 33.333 0.00 0.00 0.00 0.86
2202 4081 8.576442 TCTCATTCTTCTCGTTGTGCATATATA 58.424 33.333 0.00 0.00 0.00 0.86
2203 4082 7.436933 TCTCATTCTTCTCGTTGTGCATATAT 58.563 34.615 0.00 0.00 0.00 0.86
2204 4083 6.805713 TCTCATTCTTCTCGTTGTGCATATA 58.194 36.000 0.00 0.00 0.00 0.86
2205 4084 5.664457 TCTCATTCTTCTCGTTGTGCATAT 58.336 37.500 0.00 0.00 0.00 1.78
2206 4085 5.072040 TCTCATTCTTCTCGTTGTGCATA 57.928 39.130 0.00 0.00 0.00 3.14
2207 4086 3.930336 TCTCATTCTTCTCGTTGTGCAT 58.070 40.909 0.00 0.00 0.00 3.96
2208 4087 3.385193 TCTCATTCTTCTCGTTGTGCA 57.615 42.857 0.00 0.00 0.00 4.57
2209 4088 3.990469 TCTTCTCATTCTTCTCGTTGTGC 59.010 43.478 0.00 0.00 0.00 4.57
2210 4089 5.923114 TCTTCTTCTCATTCTTCTCGTTGTG 59.077 40.000 0.00 0.00 0.00 3.33
2211 4090 5.923684 GTCTTCTTCTCATTCTTCTCGTTGT 59.076 40.000 0.00 0.00 0.00 3.32
2212 4091 5.923114 TGTCTTCTTCTCATTCTTCTCGTTG 59.077 40.000 0.00 0.00 0.00 4.10
2213 4092 6.090483 TGTCTTCTTCTCATTCTTCTCGTT 57.910 37.500 0.00 0.00 0.00 3.85
2214 4093 5.713792 TGTCTTCTTCTCATTCTTCTCGT 57.286 39.130 0.00 0.00 0.00 4.18
2215 4094 7.383572 TCTTTTGTCTTCTTCTCATTCTTCTCG 59.616 37.037 0.00 0.00 0.00 4.04
2216 4095 8.600449 TCTTTTGTCTTCTTCTCATTCTTCTC 57.400 34.615 0.00 0.00 0.00 2.87
2217 4096 9.218440 GATCTTTTGTCTTCTTCTCATTCTTCT 57.782 33.333 0.00 0.00 0.00 2.85
2218 4097 8.167985 CGATCTTTTGTCTTCTTCTCATTCTTC 58.832 37.037 0.00 0.00 0.00 2.87
2219 4098 7.875041 TCGATCTTTTGTCTTCTTCTCATTCTT 59.125 33.333 0.00 0.00 0.00 2.52
2220 4099 7.382110 TCGATCTTTTGTCTTCTTCTCATTCT 58.618 34.615 0.00 0.00 0.00 2.40
2221 4100 7.588143 TCGATCTTTTGTCTTCTTCTCATTC 57.412 36.000 0.00 0.00 0.00 2.67
2222 4101 8.040132 AGATCGATCTTTTGTCTTCTTCTCATT 58.960 33.333 22.32 0.00 31.97 2.57
2223 4102 7.555087 AGATCGATCTTTTGTCTTCTTCTCAT 58.445 34.615 22.32 0.00 31.97 2.90
2224 4103 6.929625 AGATCGATCTTTTGTCTTCTTCTCA 58.070 36.000 22.32 0.00 31.97 3.27
2225 4104 7.165154 CGTAGATCGATCTTTTGTCTTCTTCTC 59.835 40.741 31.55 0.00 42.86 2.87
2226 4105 6.970043 CGTAGATCGATCTTTTGTCTTCTTCT 59.030 38.462 31.55 6.93 42.86 2.85
2227 4106 6.967767 TCGTAGATCGATCTTTTGTCTTCTTC 59.032 38.462 31.55 2.82 44.01 2.87
2228 4107 6.853720 TCGTAGATCGATCTTTTGTCTTCTT 58.146 36.000 31.55 6.91 44.01 2.52
2229 4108 6.438259 TCGTAGATCGATCTTTTGTCTTCT 57.562 37.500 31.55 8.12 44.01 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.