>input_sequence_85733
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-----------------------------------------------------------------ATGCCTCGACTTGGA
GACCCAGAAGCATCTTCGATCTTGAGAATTGCAGCAGAGTTCGGGTACCTCTCTTCCATCGTCGCAGGATGCTGGTTTGA
TAACAACCTATATAGATACGGAGTGAGCTATATGCCCACCTTCTTATATTGGAGCAGAACCATGCGGTGTCTCGGAGATG
CTTTCATGGCATGGAACCTTCTTTGGTTAGTTCTTGATGAAATCGATTCACCCATGGCGCGGCCCTTTACTTGGGGGAGA
ATTTAA--------------------------------------------------------------------------
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>chr5A_1_TraesCS5A01G475000
GAGCGGCTGGAGACGACGCCCTTGTCGCATTCCCGCACCTCCATCACCTCTAGCACCAGGGATGCACGCCGGCATCAGGC
AAACACCGTGGCTACACAGGTCGCGACGAAGGTGAGATCCAATCTTGGCGCATCTCCGCGGGAGGGAAAGCTCGAGTGAG
GAGGAAGGAAGGGGAGCGAAGGTTGCGGGGGAGCCCCGCCGCCGCCGCCGCGAGCAGGCCGGCGGCGGCGAGGGAGGAGG
GAAGTGGGGGTGGGCCTGACGGTGCTAGGTTTTGGCTCCCCCGAGTCGCCCAGNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGTTCCTCAAACCATTCAGAAACCAACGAAAATCTAGCTAAACTCGCAAT
ATGCTCTTACCTTTTTTTGAGATGTGGAGGCGATTTTGCCGATTTATCTGTACTTCATTTGATT-TTTTCTTGTCAAATC
CCCGAATTGTCAAATCCGTGACTCTAGCAACCGCCCACACACTTCGATTTCTCCCCTTGTGGCAGTGGG--------GTA
CATGGTCATCTTCCCCGCATAAGGGAAGTGGGGTGCATGAATAAATTTGGGGTTATTAGAAACACTTTGCCTCACATTAT
TTTTTCTCCAACGAGTTCAGTTATGCGATACAACTTCCCCTAAATCTTTGTTATGGTTTTTTTTGCGGGCAATCTTTGTT
ATGAAATTTATTCATGTATAATATGACTGATGTTAGA------TGTATTCAGGTCATATTT-------------------
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-----------------------------------------------------------------------CTTTTCTCA
AACATGAGAACCTAGTTATTTTTGTCAAACAGTTCTTCAGGCGTTCTAGTACAACAGGATTTAGGATGCCTCGACTTGGA
GACCCAGAAGCATCTTCGATCTTGAGAATTGCAGCAGAGTTCGGGTACCTCTCTTCCATCGTCGCAGGATGCTGGTTTGA
TAACAACCTATATAGATACGGAGTGAGCTATATGCCCACCTTCTTATATTGGAGCAGAACCATGCGGTGTCTCGGAGATG
CTTTCATGGCATGGAACCTTCTTTGGTTAGTTCTTGATGAAATCGATTCACCCATGGCGCGGCCCTTTACTTGGGGGAGA
ATTTAAGTGATGTAAAACTAACAATTTCTCAAAACCGCAACCAAATTGTGTAGCACTCCATCCATTCTAAAGTAAATGAA
GTTCTAGCTTTGTCTGAAGTGAAACTTGTTTAATTTTAACTGGCAAGTAAGCAAAAACTAGTAAAATGTCCGTGCTATGC
TACGGGATCACAAAGATTGGAGATCAGGTGAAACATTGTTTATATAGTGAGGAGGAGTCTATGTTGCTACAACACCATAA
AAAAAT-GTACAAGACATTGATCAAATGATGTTATATTGT-----------------------TCAAACATAATGTTTCC
AAATGATAAATCTTTCGGTCCAAGCTAAACAATGACCATACAGAAGAGTGTAAATCAATTCGATGAACATGGGCGACTGG
TCCTAATTCCGTAGGGTGTGCCTGAGTTTCTTCTCGCATTTATATGCCAGGACATAGGAGTACATGATGTATCGTTGCTA
CATCTGCCAA-ACAAAAGCATGTGAAAGC---------------------------------------------------
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---------------------TAGCTACAT--------------------------------------------------
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---------------------GCATACACTTATGAGCATTTTAAATGGTGCATAGCAGTAGGGCAACCTGGTGCATGTAG
CTCCCGCTTGCGCAGGGTCCAGGGAAGGGTCCGACCACTTTGGGTCTATAGTACGCAGCCTTTCCCTACATTTTAAATGG
TGCATAGCAGTACTGACCTAAAATGAAAAGCTTCTAACCCCTAGCAGAGCAGCGTAACAACCAAAAGAAAATCCTTCTAA
TGCTTAGTATCAAAATAAACTGAGGAATAAGCAAAGGGTTATCATGCCCGATTAATCTGCATCTTTGCAAA-GCCTTCAC
CTACTTTTCCCCAAGGAGA----GAATCCAAGGAATCAAGCAAAATCCACATGTACGATGAAATACTTCCTCCTCAACAC
CGAAATGTCATCGATGTTGGGTAGAGGAGGAGAGGATGAAGCATTTGAGCGGCCCGACATCCTTCATGCATATATATATA
TATATATGCACAACGAGAAGAATGAGAAGAAGACAAAAGATCGATCTACGAGAATAACA
>chr5D_576
TTTAG---------------------------------------------------------------------------
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---------------------ATGTGGAGGCGATTTTGCCGATTTATCTGTACTTCATTTGATTGTTTTCTTGTCAAATC
CCCAAATTGTCAAATCCCTGACTCTGGCAACCGCCGACACACTTCAATTTCTCCCCTTGTGGCAGTGGGGTACATCCGTA
CATGGTCATCTTCCCCGCATAAGGGAAGTAGGGTGCATGAGTAAC-TTGGGGTTATTAGAAATACTTTGCCTCACATTTT
TTTT-CTCCAACGAGTTTAGTTACGCGATACAACTTCCCCTAAATCTTTG------------------------------
------------------TAATATGATTGATGTTAGAATTAGATGTATTCCGGTCCTTTTCCTTTTCTTTAACACGAGAG
CCTTGTAATGTTATTTCCCTCGATTATTTCTACATACAGATAGAGTTAACATATGATTTGATCCATGTTTGCTACTCCCT
CCGCCCCAGTGTCAAAAACGTTCTCTAAATTATGGGACAGCGGGAGTAGTTTTGTAGCAACTCATATTTCTTTGTCAATT
ATTACTGTATACGGATATTGATTTGCATATGATTAGATCCATGTTTGTTAGTTTTGTAGCAACTCATCTGCCTTTTCTCA
AACATGAGAACCTATTTTTTTTTGTCAAACAGTTCTTCAGGCGTTCTAGTACAGCAGGATTTAGGATGCCTCGACTTGGA
GACTCAGAAGCATCTTCGGTCTTGAGAATTGCAGCAGAGTTCGGGTACCTCTCTTCCATCGTCGCAGGATGCTGGTTTGA
TAACAACCTATATAGATACGGAATGTGCTATATGCCCACCTTCTTATATTGGAGCAGAACCTGGCGGTGTCTCGGAGATC
CTTTCATGGCTTGGAACCTTCTTTGGTTAGTTCTTGACAAAATCGATTCACCCATGGCGCGGCCCTTTACTTGGGGGAGA
ATTTAAGTGATGTAAACGTAACA----CTCAAAACCGCAACC---------------------ATTCTAAAGTAAATGAA
GTTCTAGCTTTGTTCGAAGTGAAACTAGTTCAATTTTA------------------------------------------
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>chr7B_1387
CAAAAT--------------------------------------------------------------------------
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--------------------------------------------------------ACTAGCAAGATGCCCGTGCTACGC
TACGGAAGCACAAAGATCAGAGAT---GTGAAACATTGTTTATAGT-----GAGGAGTCTATGTTGCTACAAAACGGTAA
AAAAAAAGTATGAGACATTGATCGAGTGATGTTATATTGTTGATAGGTATACAACGAGCAAAGTCAAACATAATGTTTCC
AAATGATAAATCCTTTCGTCCAAGCTAAACAATGCTCATACATAAGAGTGCAAACCAATTAGATGAACATGGGTCACTGA
CATTAATTCAGTAGGGTTTGCCTGAGTTTCTTCTCGCATTTCTATGCCAGGACATAGGAGTACATGATGTATTGTTGCTA
CATTTACCAA-ACAGAAGCATGTGAAAGT---------------------------------------------------
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---------------------TGGCTACAT--------------------------------------------------
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---------------------GCATACACTTATTAGGATTTTCAATGGTGCAGAGCAAACCATGCCA-------------
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---------------ACCTAAAAGTAAATGCTTCTAACCCCTAGCAGAGCAGGGTAATGGCGAAAAGGAAATCCTTCTAA
TGCCTAGGATCAAAATAAACCGAGGAATAAGCAAAGGGTTATCATGCCCGATTAATCTACATCTTTGCAAAGGCCTTCAC
CTACTTTTCCCCAAGGAGATCTAGAACCCAAGGAATCAAGAAACATCCACATATGCGATGAAATACTTTCTCCTCAACAC
CGAAATATCATCGATGCTGGGTAGAGGAGGAGAGGATGA-----------------------------------------
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>chr1B_1390
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------------------------------------------------------AAACTAGCAAGATGCCCATGCTACGC
TACGGAAGCACAAAGATCAGAGAT---GTGAAACATTGTTTATAGT-----GAGGAGTCTATGTTGCTACAAAACAGTA-
AAAAAAGGTATGAGACATTGATCGAGTGATGTTATATTGTTGATAGGTATACAACAAGCAAAGTCAAACATAATGTTTCC
AAATGATAAATCCTTTCGTCCAAGCTAAACAATGATCATACATAAGAGTGCAAACCAATTAGATGAACATGGGTCACTGA
CATTAATTCATTAGGGTTTGCCTGAGTTTCTTCTCGCATTTCTATGCCAGGACATAGGAGTACATGATGTATTGTTGCTA
CATTTGCCAA-ACAGAAGCATGTGAAAGT---------------------------------------------------
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---------------------TGGCTACAT--------------------------------------------------
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---------------------GCATACACTTATTAGGATTTTCAATGGTGCAGAGCAAACCATGCCA-------------
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---------------ACCTAAAAGTAAATGCTTCTAACCCCTAGCAGAGCAGGGTAATGGCGAAAAGGAAATCCTTCTAA
TGCCTAGGATCAAAATAAACCGAGGAATAAGCAAAGGGTTATCATGCCCGATTAATCTACATCTTTGCAAAGGCCTTCAC
CTACTTTTCCCCAAGGAGATCTAGAACCCAAGGAATCAAGAAACATCCACATATGCGATGAAATACTTTCTCCTCAACAC
CGAAATATCATCGATGTTGGGTAGAGGAGGAGAGGATGA-----------------------------------------
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>chr5A_1392
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--------------------------------------------------------ACTAGTAAGATGCATGTGCTATGC
TACGGAATCACAAAGATCGGAGATATGGTGAAACATTGTTTATAGT-----GAGGAATCTATGTTGTTACAACACAGT--
AAAAAAAATACGAGACATTGATCTAGTGATATTATATTGTTGATAGGTATACAACAAGCACAATCAAACATAATCTTTTC
AAATGCTAGATCTTTTCGTCCAAGCTAAACAATGCCCATATAGAAGAATGTAAATCAATTAGATGAACATGGGTCACCGG
TCTTAATTCTGTAGGGTGTGTCTGAGTTTCTTCTCGCATTTATATGCCAGGACATAGGAGTACATGATGTATTGTTGCTT
CTTTTGCCAAAACAAAAGCATGTGAAAGGTATTTTTTTTTGAATAGGAGGATTACCTCCGGCCTCTGCATCAGTCGATGC
ATGCAGCCATATTATTAGAAAGCGTAACGAAGTCTTACAATCCAATGTAGCTCAAAATCCGAGCAAAAAAAGAGTAAATA
AATCTGTAAAGCGCCACATCCAGCAATAAAGCGCCACATCCGGCGATAAAGAATTGGCTACGATGCCTACACACCTAGCC
TATTATTCGCTCGTCATTCAAATCGGCTGAAGATAGCCCGTGCTACCGTCTCCCAGCGGTTGCACCCAATAAACATAAGC
TCACTGTAGTCCGCATGAGTGAGTAACGATCACATACGGATCCAGGCTGTAGCTCTGTAGATAACCTGCAAAAAATTAGT
GAATGTTGCCCCATTAAAAATCATATTATTTCTTGTGTTCCATATAGCTCATAGTAATGCACATTTCCCTATCTGAATAT
GTTTAGCTATGTGTATGTCTACTCCATTAAGCCACGTCTCAAATAACGTGTTTATGCTCATTGGAGGATGAACGTTAAAA
GCTATATAAATGGATCGCCATAACAATTTTGCTAGTGAACACTCGAGAAAGAGGTGTTCAATCGTTTCGTTTTGATTGCA
AAAACAACACCTGGGATTACCAACCCAATTCCTTTTCATCAGATTATCTTTGGTCAAGATGACTCCTTTGTGGACGAACC
ACATAAAGATCTTGATGCAGAGTGGAACTTTAATTTTCCATATGTGTAAAGACCTTGACAATGGCTCAGAATCAATTAAG
TTCAAATACATAGATTTCACAGAGAATAATCCATTCGTGGTTAACTTCCAACTAATTTTATCTGCCTGGTCTGAAAGTGG
AACATCCATCAACCTACGGACTAGGTGTAACCAAGCATTCCAACGTTCCCCTATAAGAGATCTCCTAAATTGGATGTTAA
GTGCTACTGAGTTTAATACTGTGGCTACATAATCCTTTTTACGTCACACAATATTATATAAAGAAGGGTATTGTATAGCC
AGAGGCGTCTCCCCTAGCCATGGGTCCTCCCAGAATCTAATAGTGGTACCACTGCCAATTAGGAACTTCACCCGCTGGAA
GAAACTTACTTTTGTCTTCATTAACCCTTTCCAAAAGGATGAGTCCGTTGGCCTTGCATTCACCTGGGCCAAAGTCTTAG
TATGTAGGTATTTATTCCGCGAGATTTATACCCACATGCCTTCGGTCTCAGTCGATAGTCTGTATAGCCATTTGCTAAGC
AAACATCTATTCTTGACCTCTAAATTCTCGATCCCTAACCCACCCTGGTCTTTTGGTTTACACAAGATATCCCATCTAGC
CAGTCTATATTTCTTCTTGGCCTCATCGCTTTGCCATAAGAATCCAGATTTGTAAAAGTCTAATCTTTTCTGTACCCCTA
CGGGTACTACAAAGAAAGATAGGAGGAACATCAGCAAACTCGTCAAAACCGAGTTAATCAACACCAGCCGCCCTCCGTAA
GACATTAGCTTGCCCTTCCAACAACTTAATCTTTTTTCAAATCTATCTTCTATACATTTCCATTCTTTGTTCGTTAACCG
TCTATGATGAATTGGGTATAGGCATACACTTATTAGGATTTTAAATAGTGCAGAGCAGACTGTACG--------------
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---------------ACCTAAGATGAAATGCTTCTATCCCCTAGCAGAGCAGTGTAACAACCAAAAGGAAGTCCTTCTGA
TGCTTAGGATCAAAATAAACCGAGGAATAAGCAAAGGGTTATCATGCCCGATTAATCTGCATCTTCGCAAA-GCCTTCAC
CTACTTTTCCCCAAGGAGATCTAGAATCCAAGGAATCAAGCAAAATCCACATGTGCGATGAAATAATTCCTCCTCAACAC
CGAAATGTCATCGATGTTGGGTAGAGGAGGAATGGATGA-----------------------------------------
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>chr7B_1392
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--------------------------------------------------------ACTAGCAAGATGCCCGTGCTACGC
TACGGAAGCACAAAGATCAGAGATCAGGTGAAACATTGTTTATAGT-----GAGGAGTCTATGTTGCTACAAAACGGT--
AAAAAAAGTATGAGACATTGATCAAGTGATGTTATATTGTTGATAGGTATACAACGAGCAAAGTCAAACATAATGTTTCC
AAATGATAAACCCTTTCGTCCAGGCTAAACAATGCCCATACAGAAGAGTGCAAACCAATTAGATGAACATGGGTCACTGA
CATTAATTCAGTAGGGTTTGCCTGAGTTTCTTCTCGCATTTATATGCCAAGACATAGGAGTACATGATGTGTTGTTGCTA
CATTTGCCAA-ACAGAAGCGTGTGAAAAT---------------------------------------------------
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---------------------TGGCTACAT--------------------------------------------------
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---------------------GCATACACTTATTAGGATTTTCAATGGTGCAGAGCAAACCATGCCA-------------
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---------------ACCTAAAAGTAAACGCTTCTAACCCCTAGCAGAGCAGGGTAATGGCGAAAAGGAAATCCTTCTAG
TGCCTAGGATCAAAATAAACCGAGGAATAAGCAAAGGGTTATCATGCCCGATTAATCTACATCTTTGCAAAGGCCTTCAC
CTACTTTTCCCCAAGGAGATCTAGAACCCAAGGAATCAAGCAACATCCACATATGCGATGAAATACTTTCTTCTCAACAC
CGAAATGTCATCGATGTTGGGTAGAGGAGGAGAGGATGA-----------------------------------------
-----------------------------------------------------------
>SNPs
S-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS-----------------------------------------------------------
---S-------------S-------S---------S---------S----------------------------------
-----------------------------S----------S---SS----------------S---------------S-
----S------------S-----S--------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS--------S-----------------------S----S-S--S-------------------
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--------------S--S-----------------------------------S--------------------------
---S--------------S-------------------------------------------------------------
----------------------S--S-----------------------------------SS----------------S
----------S--------------------------SS-----------------------------------------
----------------SS-----SSSS---------------SSSSSSSSSSSSSSSSSSSSS-----------------
-------------SS-----------S---S-------SSSSSSSSSSSSSSSS----------S---S-----------
-----S-----------S--------------------------SSSSSSS------------------------SS---
-----S-----S-------------S------------------------------------------------------
---------------SS-------------------------------------------S------------SS-----
--S------S--------------------------------------------------------------S-------
---S------------------------S---------------------------------------------------
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----------------------S---------------------------------------------------------
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---------------------------------S--S---------------S-----SSS-SSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS-------------S-----------------------S--------------S------------
-------S------------S-----------------------------------------------------------
------------------------------------------------------S-------------------------
---------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_176
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----------------------------------------------------------------------------TGAG
GAGGAAGGAAGGGGAG----------------------------------------------------------------
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>reverse_1930
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---------CGTAGGGTGTGCCTGAGTTT---------------------------------------------------
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