Multiple sequence alignment - TraesCS5A01G473800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G473800 chr5A 100.000 4321 0 0 909 5229 650130900 650126580 0.000000e+00 7980.0
1 TraesCS5A01G473800 chr5A 100.000 505 0 0 1 505 650131808 650131304 0.000000e+00 933.0
2 TraesCS5A01G473800 chr5D 90.007 2922 177 62 909 3773 521716451 521713588 0.000000e+00 3672.0
3 TraesCS5A01G473800 chr5D 78.520 1541 156 116 3766 5209 521713570 521712108 0.000000e+00 850.0
4 TraesCS5A01G473800 chr5D 80.226 531 67 24 1 505 521717061 521716543 1.070000e-96 364.0
5 TraesCS5A01G473800 chr5B 89.127 2005 124 48 1894 3853 658095144 658093189 0.000000e+00 2409.0
6 TraesCS5A01G473800 chr5B 89.125 377 12 17 3861 4227 658093062 658092705 4.810000e-120 442.0
7 TraesCS5A01G473800 chr5B 88.472 373 22 8 996 1368 658095497 658095146 1.040000e-116 431.0
8 TraesCS5A01G473800 chr5B 80.998 521 71 17 1 501 658096238 658095726 6.350000e-104 388.0
9 TraesCS5A01G473800 chr5B 77.262 431 43 27 4362 4761 658092582 658092176 8.880000e-48 202.0
10 TraesCS5A01G473800 chr5B 82.941 170 16 9 5070 5229 658091894 658091728 1.960000e-29 141.0
11 TraesCS5A01G473800 chr5B 78.767 146 14 10 4788 4933 658092114 658091986 1.210000e-11 82.4
12 TraesCS5A01G473800 chr2D 94.872 39 2 0 4885 4923 288223746 288223708 1.570000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G473800 chr5A 650126580 650131808 5228 True 4456.500000 7980 100.000000 1 5229 2 chr5A.!!$R1 5228
1 TraesCS5A01G473800 chr5D 521712108 521717061 4953 True 1628.666667 3672 82.917667 1 5209 3 chr5D.!!$R1 5208
2 TraesCS5A01G473800 chr5B 658091728 658096238 4510 True 585.057143 2409 83.813143 1 5229 7 chr5B.!!$R1 5228

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
416 458 0.173708 ACGTCCCATCTCGCTTTCTC 59.826 55.0 0.00 0.0 0.00 2.87 F
972 1023 0.743345 GGGCGAGGAGTGCGTTTTAT 60.743 55.0 0.00 0.0 0.00 1.40 F
1910 1982 0.179121 CAAGTAGTGCGCCGGATACA 60.179 55.0 5.05 0.0 0.00 2.29 F
2621 2700 0.247736 ATCTCCGTTGAGCTGTGGTC 59.752 55.0 0.00 0.0 38.58 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1688 1748 0.811281 GGAATTCAAACGAGGCCTGG 59.189 55.0 12.0 13.19 0.00 4.45 R
2596 2675 0.032017 AGCTCAACGGAGATAGGGGT 60.032 55.0 0.0 0.00 44.26 4.95 R
3838 4004 0.806868 TGCTGCATCTAAAGCTGTGC 59.193 50.0 0.0 0.00 40.21 4.57 R
4354 4683 0.453793 CGAGAGACCAGCCAGTAGTG 59.546 60.0 0.0 0.00 0.00 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 8.421002 ACTTGGTTGTATATAAAATGATTGGGC 58.579 33.333 0.00 0.00 0.00 5.36
71 73 7.389330 TCCTCTTCGCAACAATTAAATTACTCA 59.611 33.333 0.00 0.00 0.00 3.41
75 77 9.478019 CTTCGCAACAATTAAATTACTCAGTAG 57.522 33.333 0.00 0.00 0.00 2.57
76 78 7.970384 TCGCAACAATTAAATTACTCAGTAGG 58.030 34.615 0.00 0.00 0.00 3.18
78 80 7.692291 CGCAACAATTAAATTACTCAGTAGGTG 59.308 37.037 0.00 0.00 0.00 4.00
79 81 8.726988 GCAACAATTAAATTACTCAGTAGGTGA 58.273 33.333 0.00 0.00 0.00 4.02
160 163 9.976511 ATGAGTTGCAATCATTTCATAAATAGG 57.023 29.630 0.59 0.00 33.60 2.57
173 176 6.942532 TCATAAATAGGAAGAACACATGGC 57.057 37.500 0.00 0.00 0.00 4.40
195 220 5.365619 GCTTATACCAAACTAGCAGCCTAA 58.634 41.667 0.00 0.00 0.00 2.69
199 233 6.759497 ATACCAAACTAGCAGCCTAAAAAG 57.241 37.500 0.00 0.00 0.00 2.27
234 268 5.350504 TCTTTCTGAGAGGAGGCATTTAG 57.649 43.478 0.00 0.00 0.00 1.85
257 291 3.096489 TGTGGAGCAAAATGTTGAAGC 57.904 42.857 0.00 0.00 36.83 3.86
258 292 2.053627 GTGGAGCAAAATGTTGAAGCG 58.946 47.619 0.00 0.00 36.83 4.68
260 294 1.063031 GAGCAAAATGTTGAAGCGGC 58.937 50.000 0.00 0.00 36.83 6.53
261 295 0.675633 AGCAAAATGTTGAAGCGGCT 59.324 45.000 0.00 0.00 36.83 5.52
264 304 0.318120 AAAATGTTGAAGCGGCTGGG 59.682 50.000 1.81 0.00 0.00 4.45
297 339 4.147449 CTGATCCGCGTGAGGGCA 62.147 66.667 4.92 1.96 43.57 5.36
416 458 0.173708 ACGTCCCATCTCGCTTTCTC 59.826 55.000 0.00 0.00 0.00 2.87
501 552 4.659172 ATGGCCACCACCACCACG 62.659 66.667 8.16 0.00 44.17 4.94
933 984 4.477975 GTCCAGGTCGGTCGCTCG 62.478 72.222 0.00 0.00 35.57 5.03
970 1021 2.668550 GGGCGAGGAGTGCGTTTT 60.669 61.111 0.00 0.00 0.00 2.43
972 1023 0.743345 GGGCGAGGAGTGCGTTTTAT 60.743 55.000 0.00 0.00 0.00 1.40
974 1025 1.062148 GGCGAGGAGTGCGTTTTATTC 59.938 52.381 0.00 0.00 0.00 1.75
975 1026 1.266891 GCGAGGAGTGCGTTTTATTCG 60.267 52.381 0.00 0.00 0.00 3.34
976 1027 1.323534 CGAGGAGTGCGTTTTATTCGG 59.676 52.381 0.00 0.00 0.00 4.30
977 1028 2.344025 GAGGAGTGCGTTTTATTCGGT 58.656 47.619 0.00 0.00 0.00 4.69
1020 1077 2.118313 TGGTGCTGGATCTCAATGTG 57.882 50.000 0.00 0.00 0.00 3.21
1415 1475 1.153549 GGGAGTCGCACATCTGGTC 60.154 63.158 1.64 0.00 0.00 4.02
1419 1479 2.103042 GTCGCACATCTGGTCAGCC 61.103 63.158 0.00 0.00 0.00 4.85
1420 1480 2.821366 CGCACATCTGGTCAGCCC 60.821 66.667 0.00 0.00 0.00 5.19
1421 1481 2.673523 GCACATCTGGTCAGCCCT 59.326 61.111 0.00 0.00 0.00 5.19
1428 1488 2.363018 TGGTCAGCCCTCCTCTCG 60.363 66.667 0.00 0.00 0.00 4.04
1440 1500 0.838608 TCCTCTCGTCTCCCTACTCC 59.161 60.000 0.00 0.00 0.00 3.85
1456 1516 5.505780 CCTACTCCTCCTCCATGACTATAG 58.494 50.000 0.00 0.00 0.00 1.31
1460 1520 7.109901 ACTCCTCCTCCATGACTATAGTTAT 57.890 40.000 6.88 5.52 0.00 1.89
1461 1521 7.540183 ACTCCTCCTCCATGACTATAGTTATT 58.460 38.462 6.88 0.00 0.00 1.40
1462 1522 8.679725 ACTCCTCCTCCATGACTATAGTTATTA 58.320 37.037 6.88 0.00 0.00 0.98
1463 1523 8.880991 TCCTCCTCCATGACTATAGTTATTAC 57.119 38.462 6.88 0.00 0.00 1.89
1500 1560 2.328099 GCTGGCCTTTGTCCGTCTG 61.328 63.158 3.32 0.00 0.00 3.51
1535 1595 3.442996 CGGGAAGCAGGTCTACTTG 57.557 57.895 0.00 0.00 0.00 3.16
1545 1605 1.203187 AGGTCTACTTGGGTGAGCTCA 60.203 52.381 13.74 13.74 33.98 4.26
1546 1606 1.623811 GGTCTACTTGGGTGAGCTCAA 59.376 52.381 20.19 0.00 33.40 3.02
1556 1616 2.238521 GGTGAGCTCAAACAAATCCCA 58.761 47.619 20.19 0.00 0.00 4.37
1560 1620 2.163211 GAGCTCAAACAAATCCCAGCTC 59.837 50.000 9.40 3.15 44.39 4.09
1561 1621 1.135575 GCTCAAACAAATCCCAGCTCG 60.136 52.381 0.00 0.00 0.00 5.03
1602 1662 7.595502 CGGTGTCTAATTTCGATTATCTTAGCT 59.404 37.037 0.00 0.00 0.00 3.32
1603 1663 8.704234 GGTGTCTAATTTCGATTATCTTAGCTG 58.296 37.037 0.00 0.00 0.00 4.24
1609 1669 8.553459 AATTTCGATTATCTTAGCTGTATGGG 57.447 34.615 0.00 0.00 0.00 4.00
1614 1674 1.776662 TCTTAGCTGTATGGGCTCGT 58.223 50.000 0.00 0.00 40.74 4.18
1615 1675 1.409064 TCTTAGCTGTATGGGCTCGTG 59.591 52.381 0.00 0.00 40.74 4.35
1627 1687 1.066430 GGGCTCGTGATTAACACTGGA 60.066 52.381 0.00 0.00 46.24 3.86
1632 1692 5.527582 GGCTCGTGATTAACACTGGATAATT 59.472 40.000 0.00 0.00 46.24 1.40
1696 1756 7.201794 GGTGAACTAATTAATTAACCAGGCCTC 60.202 40.741 16.76 5.46 0.00 4.70
1705 1765 1.995376 AACCAGGCCTCGTTTGAATT 58.005 45.000 10.30 0.00 0.00 2.17
1712 1772 3.005791 AGGCCTCGTTTGAATTCCTTTTG 59.994 43.478 0.00 0.00 0.00 2.44
1723 1783 0.972883 TTCCTTTTGCCCCGATTTGG 59.027 50.000 0.00 0.00 37.55 3.28
1753 1813 2.488153 TGTGTACTGAGATGAGACGGTG 59.512 50.000 0.00 0.00 0.00 4.94
1754 1814 2.488545 GTGTACTGAGATGAGACGGTGT 59.511 50.000 0.00 0.00 0.00 4.16
1758 1818 1.517257 GAGATGAGACGGTGTGGCG 60.517 63.158 0.00 0.00 0.00 5.69
1833 1893 3.681897 ACATCAACTTCAATCTGAGCGAC 59.318 43.478 0.00 0.00 0.00 5.19
1836 1896 4.486090 TCAACTTCAATCTGAGCGACTAC 58.514 43.478 0.00 0.00 0.00 2.73
1861 1921 4.476479 AGGAGGATTTGAAGCAGGTAATCT 59.524 41.667 0.00 0.00 0.00 2.40
1863 1923 6.158695 AGGAGGATTTGAAGCAGGTAATCTTA 59.841 38.462 0.00 0.00 0.00 2.10
1865 1925 7.174080 GGAGGATTTGAAGCAGGTAATCTTATC 59.826 40.741 0.00 0.00 0.00 1.75
1866 1926 7.001073 AGGATTTGAAGCAGGTAATCTTATCC 58.999 38.462 0.00 0.00 0.00 2.59
1867 1927 6.772716 GGATTTGAAGCAGGTAATCTTATCCA 59.227 38.462 0.00 0.00 0.00 3.41
1868 1928 7.285401 GGATTTGAAGCAGGTAATCTTATCCAA 59.715 37.037 0.00 0.00 0.00 3.53
1869 1929 7.630242 TTTGAAGCAGGTAATCTTATCCAAG 57.370 36.000 0.00 0.00 0.00 3.61
1870 1930 5.126067 TGAAGCAGGTAATCTTATCCAAGC 58.874 41.667 0.00 0.00 0.00 4.01
1871 1931 4.092116 AGCAGGTAATCTTATCCAAGCC 57.908 45.455 0.00 0.00 0.00 4.35
1872 1932 3.718956 AGCAGGTAATCTTATCCAAGCCT 59.281 43.478 0.00 0.00 0.00 4.58
1875 1935 5.221742 GCAGGTAATCTTATCCAAGCCTAGT 60.222 44.000 0.00 0.00 0.00 2.57
1877 1937 6.708054 CAGGTAATCTTATCCAAGCCTAGTTG 59.292 42.308 0.00 0.00 0.00 3.16
1878 1938 6.615726 AGGTAATCTTATCCAAGCCTAGTTGA 59.384 38.462 0.00 0.00 0.00 3.18
1879 1939 7.293535 AGGTAATCTTATCCAAGCCTAGTTGAT 59.706 37.037 0.00 0.00 0.00 2.57
1880 1940 7.939588 GGTAATCTTATCCAAGCCTAGTTGATT 59.060 37.037 0.00 0.00 0.00 2.57
1881 1941 7.814264 AATCTTATCCAAGCCTAGTTGATTG 57.186 36.000 0.00 0.00 0.00 2.67
1909 1981 0.874607 CCAAGTAGTGCGCCGGATAC 60.875 60.000 5.05 0.00 0.00 2.24
1910 1982 0.179121 CAAGTAGTGCGCCGGATACA 60.179 55.000 5.05 0.00 0.00 2.29
1911 1983 0.750850 AAGTAGTGCGCCGGATACAT 59.249 50.000 5.05 0.00 0.00 2.29
1914 1986 2.094700 AGTAGTGCGCCGGATACATATG 60.095 50.000 5.05 0.00 0.00 1.78
1944 2016 4.080582 TGGTTTGTCCGATGGTTGATATCT 60.081 41.667 3.98 0.00 39.52 1.98
2166 2238 5.793457 ACGCACTAAAATTAATTCACTTCGC 59.207 36.000 0.10 0.52 0.00 4.70
2180 2252 4.631131 TCACTTCGCCCACATTATCATAG 58.369 43.478 0.00 0.00 0.00 2.23
2185 2257 6.492429 ACTTCGCCCACATTATCATAGTAGTA 59.508 38.462 0.00 0.00 0.00 1.82
2186 2258 6.510879 TCGCCCACATTATCATAGTAGTAG 57.489 41.667 0.00 0.00 0.00 2.57
2187 2259 6.008331 TCGCCCACATTATCATAGTAGTAGT 58.992 40.000 0.00 0.00 0.00 2.73
2208 2280 9.643693 AGTAGTTTCTTTTATCAAATGCCATTG 57.356 29.630 0.00 0.00 0.00 2.82
2217 2294 8.706492 TTTATCAAATGCCATTGACAAGATTC 57.294 30.769 3.66 0.00 41.78 2.52
2218 2295 5.725325 TCAAATGCCATTGACAAGATTCA 57.275 34.783 0.00 0.00 34.50 2.57
2280 2357 9.938670 GACACTAATTAGTAGTAGATGTGACAG 57.061 37.037 17.62 3.45 41.37 3.51
2320 2397 2.030091 GGACGTTTAATTAGCCTGTCGC 59.970 50.000 0.00 0.00 37.98 5.19
2456 2534 3.307906 TCCACTTCCCCCGACACG 61.308 66.667 0.00 0.00 0.00 4.49
2457 2535 3.307906 CCACTTCCCCCGACACGA 61.308 66.667 0.00 0.00 0.00 4.35
2458 2536 2.048503 CACTTCCCCCGACACGAC 60.049 66.667 0.00 0.00 0.00 4.34
2459 2537 2.522436 ACTTCCCCCGACACGACA 60.522 61.111 0.00 0.00 0.00 4.35
2460 2538 2.048503 CTTCCCCCGACACGACAC 60.049 66.667 0.00 0.00 0.00 3.67
2496 2575 4.261801 TCTATTTGGAGCAACTGTTAGGC 58.738 43.478 0.00 0.00 0.00 3.93
2503 2582 1.352352 AGCAACTGTTAGGCTCCACAT 59.648 47.619 0.00 0.00 30.74 3.21
2505 2584 3.009033 AGCAACTGTTAGGCTCCACATAA 59.991 43.478 0.00 0.00 30.74 1.90
2506 2585 3.375299 GCAACTGTTAGGCTCCACATAAG 59.625 47.826 0.00 0.00 0.00 1.73
2520 2599 6.970043 GCTCCACATAAGTATATGATCGAGTC 59.030 42.308 3.03 0.00 41.25 3.36
2526 2605 5.614923 AAGTATATGATCGAGTCGTCCAG 57.385 43.478 13.12 0.00 0.00 3.86
2590 2669 2.618045 CCCAGAATTGTCACCCTACACC 60.618 54.545 0.00 0.00 0.00 4.16
2591 2670 2.305927 CCAGAATTGTCACCCTACACCT 59.694 50.000 0.00 0.00 0.00 4.00
2592 2671 3.244911 CCAGAATTGTCACCCTACACCTT 60.245 47.826 0.00 0.00 0.00 3.50
2593 2672 4.003648 CAGAATTGTCACCCTACACCTTC 58.996 47.826 0.00 0.00 0.00 3.46
2594 2673 3.650942 AGAATTGTCACCCTACACCTTCA 59.349 43.478 0.00 0.00 0.00 3.02
2595 2674 2.922740 TTGTCACCCTACACCTTCAC 57.077 50.000 0.00 0.00 0.00 3.18
2596 2675 1.796017 TGTCACCCTACACCTTCACA 58.204 50.000 0.00 0.00 0.00 3.58
2619 2698 1.202463 CCTATCTCCGTTGAGCTGTGG 60.202 57.143 0.00 0.00 38.58 4.17
2620 2699 1.478510 CTATCTCCGTTGAGCTGTGGT 59.521 52.381 0.00 0.00 38.58 4.16
2621 2700 0.247736 ATCTCCGTTGAGCTGTGGTC 59.752 55.000 0.00 0.00 38.58 4.02
2622 2701 0.827925 TCTCCGTTGAGCTGTGGTCT 60.828 55.000 0.00 0.00 38.58 3.85
2623 2702 0.389166 CTCCGTTGAGCTGTGGTCTC 60.389 60.000 0.00 0.00 0.00 3.36
2641 2720 7.394641 TGTGGTCTCATCTCATATACCTGATAC 59.605 40.741 0.00 0.00 0.00 2.24
2655 2734 7.813087 ATACCTGATACCCACATTATCATCA 57.187 36.000 0.00 0.00 35.79 3.07
2658 2737 5.702670 CCTGATACCCACATTATCATCACAC 59.297 44.000 0.00 0.00 35.79 3.82
2659 2738 5.296748 TGATACCCACATTATCATCACACG 58.703 41.667 0.00 0.00 32.17 4.49
2677 2756 2.917343 CACGCGCAGGTACATATATCTG 59.083 50.000 5.73 0.00 41.82 2.90
2739 2818 5.893687 TGATTTGCGCTGATCATTAACATT 58.106 33.333 18.14 0.00 0.00 2.71
2740 2819 6.331845 TGATTTGCGCTGATCATTAACATTT 58.668 32.000 18.14 0.00 0.00 2.32
2763 2844 4.522789 TGGGCTCACAAAACTTCCTTAATC 59.477 41.667 0.00 0.00 0.00 1.75
2765 2846 5.243954 GGGCTCACAAAACTTCCTTAATCTT 59.756 40.000 0.00 0.00 0.00 2.40
2766 2847 6.239317 GGGCTCACAAAACTTCCTTAATCTTT 60.239 38.462 0.00 0.00 0.00 2.52
2920 3003 6.417044 CGAAAATGAGGGTACTACTACAATCG 59.583 42.308 0.00 0.00 0.00 3.34
2935 3018 1.067846 CAATCGGTCTCACCTGTCGAA 60.068 52.381 0.00 0.00 35.66 3.71
2950 3033 4.142816 CCTGTCGAATTTCTCCAATCACAC 60.143 45.833 0.00 0.00 0.00 3.82
2967 3051 5.344743 TCACACCCAAGTCTTATCTCATC 57.655 43.478 0.00 0.00 0.00 2.92
3024 3108 3.870274 TGATGCTCTTGACTTGGATCTG 58.130 45.455 0.00 0.00 31.33 2.90
3058 3142 4.812476 CCGCGCACGATCCCAAGA 62.812 66.667 8.75 0.00 43.93 3.02
3121 3205 3.073678 CCTGAATCGTCAACCACAATGA 58.926 45.455 0.00 0.00 31.88 2.57
3142 3226 8.663911 CAATGATCTCTTCTCAGGTAAAGAAAC 58.336 37.037 0.00 0.00 32.60 2.78
3143 3227 7.303182 TGATCTCTTCTCAGGTAAAGAAACA 57.697 36.000 0.00 0.00 32.60 2.83
3148 3236 9.408648 TCTCTTCTCAGGTAAAGAAACAAAATT 57.591 29.630 0.00 0.00 32.60 1.82
3263 3351 3.764434 CCAGGTCGTATGGCATATACTCT 59.236 47.826 10.92 8.67 0.00 3.24
3264 3352 4.380973 CCAGGTCGTATGGCATATACTCTG 60.381 50.000 10.92 17.27 0.00 3.35
3323 3412 1.950828 AGCCAATGAGCTCATCTTCG 58.049 50.000 28.83 16.84 39.48 3.79
3425 3514 2.779755 TCTACCCGAACGTACAGGTA 57.220 50.000 9.43 9.43 33.70 3.08
3426 3515 3.281727 TCTACCCGAACGTACAGGTAT 57.718 47.619 10.05 0.00 34.45 2.73
3427 3516 3.206150 TCTACCCGAACGTACAGGTATC 58.794 50.000 10.05 0.00 34.45 2.24
3449 3538 2.429478 TCATCACTACGAGAACGACCA 58.571 47.619 0.00 0.00 42.66 4.02
3468 3562 1.293683 ACCTCCTCCTCCTCCTCCTC 61.294 65.000 0.00 0.00 0.00 3.71
3469 3563 1.541672 CTCCTCCTCCTCCTCCTCC 59.458 68.421 0.00 0.00 0.00 4.30
3470 3564 0.998945 CTCCTCCTCCTCCTCCTCCT 60.999 65.000 0.00 0.00 0.00 3.69
3515 3609 4.065789 AGCTTACTGAAACTGTTGCTACC 58.934 43.478 0.00 0.00 0.00 3.18
3531 3625 6.714810 TGTTGCTACCACTGAATAATGTTTCT 59.285 34.615 0.00 0.00 0.00 2.52
3596 3690 5.659440 TCCTGAAATTAAGGTTTCCATGC 57.341 39.130 0.00 0.00 37.31 4.06
3617 3715 7.970614 CCATGCTTCTTTCCTAAAACTAATCAC 59.029 37.037 0.00 0.00 0.00 3.06
3634 3732 1.079503 CACGCCTGCTCTCCTAAAAC 58.920 55.000 0.00 0.00 0.00 2.43
3635 3733 0.685097 ACGCCTGCTCTCCTAAAACA 59.315 50.000 0.00 0.00 0.00 2.83
3636 3734 1.279271 ACGCCTGCTCTCCTAAAACAT 59.721 47.619 0.00 0.00 0.00 2.71
3637 3735 1.936547 CGCCTGCTCTCCTAAAACATC 59.063 52.381 0.00 0.00 0.00 3.06
3638 3736 2.419297 CGCCTGCTCTCCTAAAACATCT 60.419 50.000 0.00 0.00 0.00 2.90
3639 3737 3.181475 CGCCTGCTCTCCTAAAACATCTA 60.181 47.826 0.00 0.00 0.00 1.98
3640 3738 4.123506 GCCTGCTCTCCTAAAACATCTAC 58.876 47.826 0.00 0.00 0.00 2.59
3641 3739 4.383118 GCCTGCTCTCCTAAAACATCTACA 60.383 45.833 0.00 0.00 0.00 2.74
3642 3740 5.355596 CCTGCTCTCCTAAAACATCTACAG 58.644 45.833 0.00 0.00 0.00 2.74
3647 3746 4.530553 TCTCCTAAAACATCTACAGGTGCA 59.469 41.667 0.00 0.00 0.00 4.57
3674 3773 3.401033 TTGGGTGTAGTGATGTGTCTG 57.599 47.619 0.00 0.00 0.00 3.51
3704 3844 2.797792 GCATCTCGTCTCATGGACAGAC 60.798 54.545 12.80 8.53 44.70 3.51
3705 3845 2.200373 TCTCGTCTCATGGACAGACA 57.800 50.000 12.14 1.36 44.70 3.41
3706 3846 2.087646 TCTCGTCTCATGGACAGACAG 58.912 52.381 12.14 8.90 44.70 3.51
3707 3847 2.087646 CTCGTCTCATGGACAGACAGA 58.912 52.381 12.14 9.32 44.70 3.41
3749 3889 4.038162 CCAGAGTACTTACTAGATGTGGGC 59.962 50.000 0.00 0.00 36.50 5.36
3750 3890 4.645136 CAGAGTACTTACTAGATGTGGGCA 59.355 45.833 0.00 0.00 36.50 5.36
3760 3900 2.783135 AGATGTGGGCACTACTGTTTG 58.217 47.619 0.00 0.00 41.73 2.93
3816 3982 4.697756 TGCGCCCTCCGGTTCTTG 62.698 66.667 4.18 0.00 37.44 3.02
3832 3998 1.002624 TTGCAGTTCCATCCGTCCC 60.003 57.895 0.00 0.00 0.00 4.46
3838 4004 2.382770 TTCCATCCGTCCCCCATGG 61.383 63.158 4.14 4.14 38.83 3.66
3857 4148 0.806868 GCACAGCTTTAGATGCAGCA 59.193 50.000 4.07 0.00 38.61 4.41
3858 4149 1.202154 GCACAGCTTTAGATGCAGCAG 60.202 52.381 4.07 0.00 38.61 4.24
3859 4150 1.093159 ACAGCTTTAGATGCAGCAGC 58.907 50.000 4.07 1.15 38.61 5.25
3913 4207 3.325230 CGCAGCTTTATTCTTGGTAGC 57.675 47.619 0.00 0.00 0.00 3.58
3940 4234 3.717350 GCATTCACATGAAAGCAAAGC 57.283 42.857 15.05 2.98 45.07 3.51
3974 4271 0.175760 GGCCATGACTTGACGCTCTA 59.824 55.000 0.00 0.00 0.00 2.43
3979 4276 3.067320 CCATGACTTGACGCTCTATCTCA 59.933 47.826 0.00 0.00 0.00 3.27
3981 4278 3.348119 TGACTTGACGCTCTATCTCACT 58.652 45.455 0.00 0.00 0.00 3.41
3982 4279 3.127721 TGACTTGACGCTCTATCTCACTG 59.872 47.826 0.00 0.00 0.00 3.66
3983 4280 2.159310 ACTTGACGCTCTATCTCACTGC 60.159 50.000 0.00 0.00 0.00 4.40
3984 4281 1.756430 TGACGCTCTATCTCACTGCT 58.244 50.000 0.00 0.00 0.00 4.24
3985 4282 1.403323 TGACGCTCTATCTCACTGCTG 59.597 52.381 0.00 0.00 0.00 4.41
3986 4283 0.743688 ACGCTCTATCTCACTGCTGG 59.256 55.000 0.00 0.00 0.00 4.85
3990 4292 1.755959 CTCTATCTCACTGCTGGTGCT 59.244 52.381 5.70 0.00 44.98 4.40
4050 4352 4.803426 CCCTGAGCAGCCGTCGTC 62.803 72.222 0.00 0.00 0.00 4.20
4138 4440 1.681793 GCTGCAGCATCATCAGGATTT 59.318 47.619 33.36 0.00 41.59 2.17
4143 4445 4.577693 TGCAGCATCATCAGGATTTTCTAC 59.422 41.667 0.00 0.00 32.57 2.59
4144 4446 4.023365 GCAGCATCATCAGGATTTTCTACC 60.023 45.833 0.00 0.00 32.57 3.18
4145 4447 4.212847 CAGCATCATCAGGATTTTCTACCG 59.787 45.833 0.00 0.00 32.57 4.02
4230 4538 2.742372 CCCGCCGGACAACTGAAG 60.742 66.667 5.05 0.00 0.00 3.02
4233 4541 2.671177 CGCCGGACAACTGAAGCTG 61.671 63.158 5.05 0.00 0.00 4.24
4234 4542 2.328099 GCCGGACAACTGAAGCTGG 61.328 63.158 5.05 0.00 0.00 4.85
4236 4544 2.328099 CGGACAACTGAAGCTGGCC 61.328 63.158 0.00 0.00 35.96 5.36
4237 4545 2.328099 GGACAACTGAAGCTGGCCG 61.328 63.158 0.00 0.00 28.39 6.13
4239 4547 1.152963 ACAACTGAAGCTGGCCGTT 60.153 52.632 0.00 0.00 0.00 4.44
4240 4548 1.283793 CAACTGAAGCTGGCCGTTG 59.716 57.895 0.00 0.03 0.00 4.10
4241 4549 1.152963 AACTGAAGCTGGCCGTTGT 60.153 52.632 0.00 0.00 0.00 3.32
4242 4550 1.447317 AACTGAAGCTGGCCGTTGTG 61.447 55.000 0.00 0.00 0.00 3.33
4243 4551 1.597854 CTGAAGCTGGCCGTTGTGA 60.598 57.895 0.00 0.00 0.00 3.58
4244 4552 1.845809 CTGAAGCTGGCCGTTGTGAC 61.846 60.000 0.00 0.00 0.00 3.67
4246 4554 3.414136 AAGCTGGCCGTTGTGACCA 62.414 57.895 0.00 0.00 0.00 4.02
4249 4557 2.110213 TGGCCGTTGTGACCAGAC 59.890 61.111 0.00 0.00 0.00 3.51
4250 4558 3.041940 GGCCGTTGTGACCAGACG 61.042 66.667 0.00 0.00 36.61 4.18
4254 4562 3.041940 GTTGTGACCAGACGGCGG 61.042 66.667 13.24 0.00 34.57 6.13
4256 4564 3.800685 TTGTGACCAGACGGCGGTG 62.801 63.158 13.24 8.31 36.69 4.94
4312 4640 3.685836 GGTAACGCTTGTTGTGAAACT 57.314 42.857 0.00 0.00 38.04 2.66
4328 4656 7.825331 TGTGAAACTATAATCGGAGAGAGAT 57.175 36.000 0.00 0.00 37.76 2.75
4329 4657 7.652727 TGTGAAACTATAATCGGAGAGAGATG 58.347 38.462 0.00 0.00 37.76 2.90
4332 4661 7.502561 TGAAACTATAATCGGAGAGAGATGACA 59.497 37.037 0.00 0.00 43.63 3.58
4368 4701 0.037232 GGTGACACTACTGGCTGGTC 60.037 60.000 5.39 0.00 0.00 4.02
4373 4706 0.453793 CACTACTGGCTGGTCTCTCG 59.546 60.000 0.00 0.00 0.00 4.04
4412 4751 2.315781 ATCACGCGGATCATGGCTGT 62.316 55.000 12.47 0.00 0.00 4.40
4435 4777 9.551734 CTGTTCATTAGATTCTCATGTATCCAA 57.448 33.333 7.53 0.00 0.00 3.53
4454 4796 3.801594 CCAATGTTCAAGTTTCCCAAACG 59.198 43.478 0.00 0.00 45.88 3.60
4486 4832 6.998968 AACTTTGAAATTTGTGATGGCAAA 57.001 29.167 0.00 0.00 41.77 3.68
4505 4853 1.717791 ATTCATGCATGGGTCGCACG 61.718 55.000 25.97 0.00 43.35 5.34
4506 4854 3.879682 CATGCATGGGTCGCACGG 61.880 66.667 19.40 0.00 43.35 4.94
4548 4899 3.004419 GGGGAAGCACTCTGTTGTTTTAC 59.996 47.826 0.00 0.00 0.00 2.01
4549 4900 3.630312 GGGAAGCACTCTGTTGTTTTACA 59.370 43.478 0.00 0.00 0.00 2.41
4550 4901 4.261197 GGGAAGCACTCTGTTGTTTTACAG 60.261 45.833 0.00 0.00 45.46 2.74
4551 4902 3.971032 AGCACTCTGTTGTTTTACAGC 57.029 42.857 0.00 0.00 44.10 4.40
4552 4903 3.278574 AGCACTCTGTTGTTTTACAGCA 58.721 40.909 0.00 0.00 44.10 4.41
4560 4911 0.179043 TGTTTTACAGCAGTCCGCCA 60.179 50.000 0.00 0.00 44.04 5.69
4564 4915 0.036164 TTACAGCAGTCCGCCATTGT 59.964 50.000 0.00 0.00 44.04 2.71
4582 4933 2.553727 TTGCGTTAACCGTTGGGCC 61.554 57.895 0.00 0.00 39.32 5.80
4588 4940 0.250989 TTAACCGTTGGGCCTTCTGG 60.251 55.000 4.53 3.97 36.48 3.86
4614 4966 3.567797 GAGCGGCGATTGACAGGC 61.568 66.667 12.98 0.00 0.00 4.85
4622 4974 4.115199 ATTGACAGGCGGGCCCTC 62.115 66.667 22.43 13.01 44.09 4.30
4675 5045 1.639108 TGAGGTGAGGTGAGTAGGCTA 59.361 52.381 0.00 0.00 0.00 3.93
4679 5049 0.752009 TGAGGTGAGTAGGCTAGGCG 60.752 60.000 11.10 0.00 0.00 5.52
4680 5050 1.455959 AGGTGAGTAGGCTAGGCGG 60.456 63.158 11.10 0.00 0.00 6.13
4681 5051 1.757340 GGTGAGTAGGCTAGGCGGT 60.757 63.158 11.10 0.00 0.00 5.68
4725 5096 4.838307 TCCATTCTGGGAGGGGAG 57.162 61.111 0.00 0.00 38.32 4.30
4726 5097 1.694169 TCCATTCTGGGAGGGGAGC 60.694 63.158 0.00 0.00 38.32 4.70
4727 5098 2.002977 CCATTCTGGGAGGGGAGCA 61.003 63.158 0.00 0.00 32.67 4.26
4728 5099 1.574526 CCATTCTGGGAGGGGAGCAA 61.575 60.000 0.00 0.00 32.67 3.91
4729 5100 0.106819 CATTCTGGGAGGGGAGCAAG 60.107 60.000 0.00 0.00 0.00 4.01
4732 5103 3.333219 TGGGAGGGGAGCAAGCTG 61.333 66.667 0.00 0.00 0.00 4.24
4750 5121 2.364632 CTGTGATTGATGGGCCGTAAA 58.635 47.619 0.00 0.00 0.00 2.01
4752 5123 1.404035 GTGATTGATGGGCCGTAAACC 59.596 52.381 0.00 0.00 0.00 3.27
4753 5124 0.661020 GATTGATGGGCCGTAAACCG 59.339 55.000 0.00 0.00 0.00 4.44
4754 5125 1.381165 ATTGATGGGCCGTAAACCGC 61.381 55.000 0.00 0.00 34.38 5.68
4755 5126 2.437002 GATGGGCCGTAAACCGCA 60.437 61.111 0.00 0.00 34.38 5.69
4756 5127 2.437716 ATGGGCCGTAAACCGCAG 60.438 61.111 0.00 0.00 34.38 5.18
4760 5131 3.799755 GCCGTAAACCGCAGCAGG 61.800 66.667 0.00 0.00 34.38 4.85
4761 5132 3.799755 CCGTAAACCGCAGCAGGC 61.800 66.667 3.49 0.00 39.90 4.85
4762 5133 3.047280 CGTAAACCGCAGCAGGCA 61.047 61.111 3.49 0.00 45.17 4.75
4763 5134 2.398554 CGTAAACCGCAGCAGGCAT 61.399 57.895 3.49 0.00 45.17 4.40
4764 5135 1.429423 GTAAACCGCAGCAGGCATC 59.571 57.895 3.49 0.00 45.17 3.91
4765 5136 1.002746 TAAACCGCAGCAGGCATCA 60.003 52.632 3.49 0.00 45.17 3.07
4766 5137 1.305219 TAAACCGCAGCAGGCATCAC 61.305 55.000 3.49 0.00 45.17 3.06
4779 5150 1.740025 GGCATCACCTTTTTCTCCTCG 59.260 52.381 0.00 0.00 34.51 4.63
4780 5151 1.131315 GCATCACCTTTTTCTCCTCGC 59.869 52.381 0.00 0.00 0.00 5.03
4782 5153 2.930826 TCACCTTTTTCTCCTCGCTT 57.069 45.000 0.00 0.00 0.00 4.68
4785 5156 1.700186 ACCTTTTTCTCCTCGCTTCCT 59.300 47.619 0.00 0.00 0.00 3.36
4786 5157 2.904434 ACCTTTTTCTCCTCGCTTCCTA 59.096 45.455 0.00 0.00 0.00 2.94
4819 5224 3.129287 CACAGTGAAGTGAAAGCCTTTGT 59.871 43.478 0.00 0.00 42.05 2.83
4822 5227 2.031120 TGAAGTGAAAGCCTTTGTGGG 58.969 47.619 0.00 0.00 36.00 4.61
4828 5253 4.621087 AGCCTTTGTGGGTGCCCC 62.621 66.667 4.59 3.42 46.19 5.80
4848 5273 2.202932 CCTTGTGGCGCTAGCGAT 60.203 61.111 39.52 0.00 46.35 4.58
4849 5274 1.067416 CCTTGTGGCGCTAGCGATA 59.933 57.895 39.52 23.88 46.35 2.92
4850 5275 0.941463 CCTTGTGGCGCTAGCGATAG 60.941 60.000 39.52 24.30 46.35 2.08
4869 5294 2.930826 GCTAATAAGCCAGCTACCCA 57.069 50.000 0.00 0.00 43.40 4.51
4870 5295 3.425162 GCTAATAAGCCAGCTACCCAT 57.575 47.619 0.00 0.00 43.40 4.00
4871 5296 3.077359 GCTAATAAGCCAGCTACCCATG 58.923 50.000 0.00 0.00 43.40 3.66
4872 5297 3.496870 GCTAATAAGCCAGCTACCCATGT 60.497 47.826 0.00 0.00 43.40 3.21
4873 5298 3.669939 AATAAGCCAGCTACCCATGTT 57.330 42.857 0.00 0.00 0.00 2.71
4874 5299 3.669939 ATAAGCCAGCTACCCATGTTT 57.330 42.857 0.00 0.00 0.00 2.83
4875 5300 1.549203 AAGCCAGCTACCCATGTTTG 58.451 50.000 0.00 0.00 0.00 2.93
4876 5301 0.967380 AGCCAGCTACCCATGTTTGC 60.967 55.000 0.00 0.00 0.00 3.68
4877 5302 1.948721 GCCAGCTACCCATGTTTGCC 61.949 60.000 0.00 0.00 0.00 4.52
4878 5303 0.611618 CCAGCTACCCATGTTTGCCA 60.612 55.000 0.00 0.00 0.00 4.92
4879 5304 0.527565 CAGCTACCCATGTTTGCCAC 59.472 55.000 0.00 0.00 0.00 5.01
4880 5305 0.611896 AGCTACCCATGTTTGCCACC 60.612 55.000 0.00 0.00 0.00 4.61
4881 5306 1.604147 GCTACCCATGTTTGCCACCC 61.604 60.000 0.00 0.00 0.00 4.61
4882 5307 0.970427 CTACCCATGTTTGCCACCCC 60.970 60.000 0.00 0.00 0.00 4.95
4883 5308 1.730295 TACCCATGTTTGCCACCCCA 61.730 55.000 0.00 0.00 0.00 4.96
4884 5309 2.582493 CCCATGTTTGCCACCCCAC 61.582 63.158 0.00 0.00 0.00 4.61
4889 5314 3.755626 TTTGCCACCCCACCCACA 61.756 61.111 0.00 0.00 0.00 4.17
4896 5321 3.589542 CCCCACCCACACACCCAT 61.590 66.667 0.00 0.00 0.00 4.00
4922 5355 4.199310 TCCATCCACAATAGCAAAGCTAC 58.801 43.478 0.14 0.00 44.24 3.58
4923 5356 3.316308 CCATCCACAATAGCAAAGCTACC 59.684 47.826 0.14 0.00 44.24 3.18
4924 5357 2.999331 TCCACAATAGCAAAGCTACCC 58.001 47.619 0.14 0.00 44.24 3.69
4925 5358 1.670811 CCACAATAGCAAAGCTACCCG 59.329 52.381 0.14 0.00 44.24 5.28
4926 5359 2.356135 CACAATAGCAAAGCTACCCGT 58.644 47.619 0.14 0.00 44.24 5.28
4927 5360 3.527533 CACAATAGCAAAGCTACCCGTA 58.472 45.455 0.14 0.00 44.24 4.02
4928 5361 3.555956 CACAATAGCAAAGCTACCCGTAG 59.444 47.826 0.14 0.00 44.24 3.51
4929 5362 3.197116 ACAATAGCAAAGCTACCCGTAGT 59.803 43.478 0.14 0.00 44.24 2.73
4930 5363 4.403432 ACAATAGCAAAGCTACCCGTAGTA 59.597 41.667 0.14 0.00 44.24 1.82
4931 5364 2.955477 AGCAAAGCTACCCGTAGTAC 57.045 50.000 3.92 0.00 36.99 2.73
4934 5367 4.213513 AGCAAAGCTACCCGTAGTACTAT 58.786 43.478 5.75 0.00 36.99 2.12
4935 5368 5.380043 AGCAAAGCTACCCGTAGTACTATA 58.620 41.667 5.75 0.00 36.99 1.31
4936 5369 5.240403 AGCAAAGCTACCCGTAGTACTATAC 59.760 44.000 5.75 0.00 36.99 1.47
4938 5371 4.982241 AGCTACCCGTAGTACTATACCA 57.018 45.455 5.75 0.00 35.65 3.25
4940 5373 3.438434 GCTACCCGTAGTACTATACCAGC 59.562 52.174 5.75 8.03 35.65 4.85
4941 5374 2.498167 ACCCGTAGTACTATACCAGCG 58.502 52.381 5.75 3.73 0.00 5.18
4942 5375 1.198637 CCCGTAGTACTATACCAGCGC 59.801 57.143 5.75 0.00 0.00 5.92
4944 5377 1.875514 CGTAGTACTATACCAGCGCCA 59.124 52.381 2.29 0.00 0.00 5.69
4945 5378 2.350197 CGTAGTACTATACCAGCGCCAC 60.350 54.545 2.29 0.00 0.00 5.01
4948 5381 1.407979 GTACTATACCAGCGCCACTGT 59.592 52.381 2.29 0.00 45.68 3.55
4949 5382 0.175760 ACTATACCAGCGCCACTGTG 59.824 55.000 2.29 0.00 45.68 3.66
4950 5383 1.153449 TATACCAGCGCCACTGTGC 60.153 57.895 2.29 0.00 45.68 4.57
4958 5391 3.755628 GCCACTGTGCCATGCCAG 61.756 66.667 1.29 4.33 34.62 4.85
4959 5392 2.282674 CCACTGTGCCATGCCAGT 60.283 61.111 1.29 5.40 39.37 4.00
4964 5397 1.066143 ACTGTGCCATGCCAGTAGTAC 60.066 52.381 8.59 0.00 37.93 2.73
4982 5415 0.739561 ACTACGCTGTAGCCTGTAGC 59.260 55.000 14.72 0.00 38.02 3.58
4994 5427 4.082523 TGTAGCTGAGCGTGGGGC 62.083 66.667 0.00 0.00 44.05 5.80
5023 5456 4.834453 CTCGCTCTGGCTGGCCTG 62.834 72.222 13.05 12.22 36.94 4.85
5191 5648 1.077212 CTGCAGAATCCCCACCCTG 60.077 63.158 8.42 0.00 0.00 4.45
5201 5658 1.606313 CCCACCCTGTTTTGGCGAT 60.606 57.895 0.00 0.00 0.00 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 6.071334 CGAAGAGGAGTATTATAGCCCAATCA 60.071 42.308 0.00 0.00 0.00 2.57
29 30 6.334202 CGAAGAGGAGTATTATAGCCCAATC 58.666 44.000 0.00 0.00 0.00 2.67
33 34 3.510360 TGCGAAGAGGAGTATTATAGCCC 59.490 47.826 0.00 0.00 0.00 5.19
35 36 5.529791 TGTTGCGAAGAGGAGTATTATAGC 58.470 41.667 0.00 0.00 0.00 2.97
36 37 8.594881 AATTGTTGCGAAGAGGAGTATTATAG 57.405 34.615 0.00 0.00 0.00 1.31
47 49 8.230486 ACTGAGTAATTTAATTGTTGCGAAGAG 58.770 33.333 0.00 0.00 0.00 2.85
101 103 7.647715 GCCGACAACAAATTTGTATTATATGCT 59.352 33.333 23.53 8.29 41.31 3.79
106 108 8.898761 TCTATGCCGACAACAAATTTGTATTAT 58.101 29.630 23.53 9.81 41.31 1.28
113 115 6.686630 TCATTTCTATGCCGACAACAAATTT 58.313 32.000 0.00 0.00 0.00 1.82
116 118 4.759693 ACTCATTTCTATGCCGACAACAAA 59.240 37.500 0.00 0.00 0.00 2.83
117 119 4.323417 ACTCATTTCTATGCCGACAACAA 58.677 39.130 0.00 0.00 0.00 2.83
118 120 3.937814 ACTCATTTCTATGCCGACAACA 58.062 40.909 0.00 0.00 0.00 3.33
119 121 4.651994 CAACTCATTTCTATGCCGACAAC 58.348 43.478 0.00 0.00 0.00 3.32
126 129 7.766219 AAATGATTGCAACTCATTTCTATGC 57.234 32.000 26.70 0.00 45.57 3.14
154 157 7.502561 GGTATAAGCCATGTGTTCTTCCTATTT 59.497 37.037 0.00 0.00 0.00 1.40
157 160 5.427157 TGGTATAAGCCATGTGTTCTTCCTA 59.573 40.000 0.00 0.00 32.81 2.94
160 163 6.151144 AGTTTGGTATAAGCCATGTGTTCTTC 59.849 38.462 0.00 0.00 38.48 2.87
173 176 7.859325 TTTTAGGCTGCTAGTTTGGTATAAG 57.141 36.000 0.00 0.00 0.00 1.73
210 244 3.910568 ATGCCTCCTCTCAGAAAGAAG 57.089 47.619 0.00 0.00 32.23 2.85
212 246 4.383552 GCTAAATGCCTCCTCTCAGAAAGA 60.384 45.833 0.00 0.00 35.15 2.52
213 247 3.876320 GCTAAATGCCTCCTCTCAGAAAG 59.124 47.826 0.00 0.00 35.15 2.62
214 248 3.521126 AGCTAAATGCCTCCTCTCAGAAA 59.479 43.478 0.00 0.00 44.23 2.52
215 249 3.110705 AGCTAAATGCCTCCTCTCAGAA 58.889 45.455 0.00 0.00 44.23 3.02
216 250 2.756907 AGCTAAATGCCTCCTCTCAGA 58.243 47.619 0.00 0.00 44.23 3.27
217 251 3.204526 CAAGCTAAATGCCTCCTCTCAG 58.795 50.000 0.00 0.00 44.23 3.35
221 255 2.019984 CCACAAGCTAAATGCCTCCTC 58.980 52.381 0.00 0.00 44.23 3.71
280 322 4.147449 TGCCCTCACGCGGATCAG 62.147 66.667 12.47 0.00 0.00 2.90
332 374 1.729838 GCCTCGCTAATCGCTACGG 60.730 63.158 0.00 0.00 38.27 4.02
416 458 3.867984 GCCAGTGGGAGAAAGAGAAAGAG 60.868 52.174 12.15 0.00 35.59 2.85
919 970 4.180946 CTCCGAGCGACCGACCTG 62.181 72.222 0.00 0.00 0.00 4.00
954 1005 1.062148 GAATAAAACGCACTCCTCGCC 59.938 52.381 0.00 0.00 0.00 5.54
956 1007 1.323534 CCGAATAAAACGCACTCCTCG 59.676 52.381 0.00 0.00 0.00 4.63
957 1008 2.344025 ACCGAATAAAACGCACTCCTC 58.656 47.619 0.00 0.00 0.00 3.71
958 1009 2.344025 GACCGAATAAAACGCACTCCT 58.656 47.619 0.00 0.00 0.00 3.69
960 1011 1.395954 GGGACCGAATAAAACGCACTC 59.604 52.381 0.00 0.00 0.00 3.51
961 1012 1.445871 GGGACCGAATAAAACGCACT 58.554 50.000 0.00 0.00 0.00 4.40
963 1014 1.020333 CCGGGACCGAATAAAACGCA 61.020 55.000 13.13 0.00 42.83 5.24
964 1015 1.717348 CCGGGACCGAATAAAACGC 59.283 57.895 13.13 0.00 42.83 4.84
966 1017 1.708193 CCGCCGGGACCGAATAAAAC 61.708 60.000 13.13 0.00 42.83 2.43
967 1018 1.449956 CCGCCGGGACCGAATAAAA 60.450 57.895 13.13 0.00 42.83 1.52
968 1019 2.187424 CCGCCGGGACCGAATAAA 59.813 61.111 13.13 0.00 42.83 1.40
1038 1095 4.459089 GAGGAGCTGGACGTGCCC 62.459 72.222 4.04 0.00 34.97 5.36
1053 1110 2.811317 GCGGAGTTGAGCACGGAG 60.811 66.667 0.00 0.00 0.00 4.63
1116 1176 0.101219 CGGAGCAGTCGTCATCATCA 59.899 55.000 0.00 0.00 0.00 3.07
1156 1216 4.430765 CCTCGTGACGAACCCGGG 62.431 72.222 22.25 22.25 40.78 5.73
1167 1227 2.125350 GGGAAGAGCTGCCTCGTG 60.125 66.667 0.00 0.00 43.05 4.35
1219 1279 2.821366 CTGCTGCCCCATCGTCAC 60.821 66.667 0.00 0.00 0.00 3.67
1350 1410 2.185350 CCCCTGTACTGCGAGCTG 59.815 66.667 0.00 0.37 0.00 4.24
1415 1475 2.124693 GGAGACGAGAGGAGGGCTG 61.125 68.421 0.00 0.00 0.00 4.85
1419 1479 0.841289 AGTAGGGAGACGAGAGGAGG 59.159 60.000 0.00 0.00 0.00 4.30
1420 1480 1.202722 GGAGTAGGGAGACGAGAGGAG 60.203 61.905 0.00 0.00 0.00 3.69
1421 1481 0.838608 GGAGTAGGGAGACGAGAGGA 59.161 60.000 0.00 0.00 0.00 3.71
1428 1488 0.927767 TGGAGGAGGAGTAGGGAGAC 59.072 60.000 0.00 0.00 0.00 3.36
1440 1500 7.674348 TGGGTAATAACTATAGTCATGGAGGAG 59.326 40.741 5.70 0.00 0.00 3.69
1456 1516 9.878599 CGATTGATTAGTGATTTGGGTAATAAC 57.121 33.333 0.00 0.00 0.00 1.89
1460 1520 6.038161 CAGCGATTGATTAGTGATTTGGGTAA 59.962 38.462 0.00 0.00 0.00 2.85
1461 1521 5.527214 CAGCGATTGATTAGTGATTTGGGTA 59.473 40.000 0.00 0.00 0.00 3.69
1462 1522 4.336433 CAGCGATTGATTAGTGATTTGGGT 59.664 41.667 0.00 0.00 0.00 4.51
1463 1523 4.261322 CCAGCGATTGATTAGTGATTTGGG 60.261 45.833 0.00 0.00 0.00 4.12
1472 1532 2.684881 ACAAAGGCCAGCGATTGATTAG 59.315 45.455 5.01 0.00 0.00 1.73
1535 1595 1.546029 GGGATTTGTTTGAGCTCACCC 59.454 52.381 18.03 17.84 0.00 4.61
1545 1605 1.168714 GCTCGAGCTGGGATTTGTTT 58.831 50.000 29.88 0.00 38.21 2.83
1546 1606 2.859992 GCTCGAGCTGGGATTTGTT 58.140 52.632 29.88 0.00 38.21 2.83
1575 1635 7.594015 GCTAAGATAATCGAAATTAGACACCGA 59.406 37.037 0.00 0.00 31.02 4.69
1602 1662 3.527533 GTGTTAATCACGAGCCCATACA 58.472 45.455 0.00 0.00 37.31 2.29
1614 1674 9.177608 CCTGAAGAAATTATCCAGTGTTAATCA 57.822 33.333 0.00 0.00 0.00 2.57
1615 1675 9.178758 ACCTGAAGAAATTATCCAGTGTTAATC 57.821 33.333 0.00 0.00 0.00 1.75
1627 1687 6.001460 TGTCGAAACCACCTGAAGAAATTAT 58.999 36.000 0.00 0.00 0.00 1.28
1632 1692 2.169769 AGTGTCGAAACCACCTGAAGAA 59.830 45.455 0.95 0.00 33.20 2.52
1676 1736 6.937436 AACGAGGCCTGGTTAATTAATTAG 57.063 37.500 29.45 3.37 29.70 1.73
1678 1738 5.712917 TCAAACGAGGCCTGGTTAATTAATT 59.287 36.000 30.47 12.65 31.28 1.40
1688 1748 0.811281 GGAATTCAAACGAGGCCTGG 59.189 55.000 12.00 13.19 0.00 4.45
1696 1756 2.412870 GGGGCAAAAGGAATTCAAACG 58.587 47.619 7.93 0.00 0.00 3.60
1705 1765 2.664825 CCAAATCGGGGCAAAAGGA 58.335 52.632 0.00 0.00 0.00 3.36
1833 1893 3.452474 CTGCTTCAAATCCTCCTCGTAG 58.548 50.000 0.00 0.00 0.00 3.51
1836 1896 1.065854 ACCTGCTTCAAATCCTCCTCG 60.066 52.381 0.00 0.00 0.00 4.63
1861 1921 4.883585 CAGCAATCAACTAGGCTTGGATAA 59.116 41.667 0.00 0.00 33.60 1.75
1863 1923 3.285484 CAGCAATCAACTAGGCTTGGAT 58.715 45.455 0.00 0.00 33.60 3.41
1865 1925 2.440409 ACAGCAATCAACTAGGCTTGG 58.560 47.619 0.00 0.00 33.60 3.61
1866 1926 4.256920 AGTACAGCAATCAACTAGGCTTG 58.743 43.478 0.00 0.00 33.60 4.01
1867 1927 4.559862 AGTACAGCAATCAACTAGGCTT 57.440 40.909 0.00 0.00 33.60 4.35
1868 1928 4.141914 GGTAGTACAGCAATCAACTAGGCT 60.142 45.833 2.06 0.00 36.99 4.58
1869 1929 4.120589 GGTAGTACAGCAATCAACTAGGC 58.879 47.826 2.06 0.00 0.00 3.93
1870 1930 5.339008 TGGTAGTACAGCAATCAACTAGG 57.661 43.478 2.06 0.00 0.00 3.02
1871 1931 6.398918 ACTTGGTAGTACAGCAATCAACTAG 58.601 40.000 2.06 0.00 43.40 2.57
1872 1932 6.354794 ACTTGGTAGTACAGCAATCAACTA 57.645 37.500 2.06 0.00 43.40 2.24
1875 1935 6.163476 CACTACTTGGTAGTACAGCAATCAA 58.837 40.000 9.58 0.00 46.08 2.57
1877 1937 4.567159 GCACTACTTGGTAGTACAGCAATC 59.433 45.833 9.58 0.00 46.08 2.67
1878 1938 4.504858 GCACTACTTGGTAGTACAGCAAT 58.495 43.478 9.58 4.90 46.08 3.56
1879 1939 3.613193 CGCACTACTTGGTAGTACAGCAA 60.613 47.826 9.58 2.93 46.08 3.91
1880 1940 2.094906 CGCACTACTTGGTAGTACAGCA 60.095 50.000 9.58 0.00 46.08 4.41
1881 1941 2.527100 CGCACTACTTGGTAGTACAGC 58.473 52.381 9.58 8.64 46.08 4.40
1944 2016 3.814906 CACCACCACCACCCACCA 61.815 66.667 0.00 0.00 0.00 4.17
2185 2257 8.149647 TGTCAATGGCATTTGATAAAAGAAACT 58.850 29.630 10.65 0.00 37.88 2.66
2186 2258 8.309163 TGTCAATGGCATTTGATAAAAGAAAC 57.691 30.769 10.65 0.00 37.88 2.78
2187 2259 8.899427 TTGTCAATGGCATTTGATAAAAGAAA 57.101 26.923 10.65 0.00 37.88 2.52
2194 2266 7.123098 ACTGAATCTTGTCAATGGCATTTGATA 59.877 33.333 10.65 7.40 37.88 2.15
2207 2279 9.820725 AAATTTCATTTCAACTGAATCTTGTCA 57.179 25.926 0.00 0.00 32.94 3.58
2233 2310 3.070015 TCAAGTTCATGAGCAGTCTGTGA 59.930 43.478 12.41 2.86 0.00 3.58
2234 2311 3.186001 GTCAAGTTCATGAGCAGTCTGTG 59.814 47.826 12.41 0.68 0.00 3.66
2235 2312 3.181462 TGTCAAGTTCATGAGCAGTCTGT 60.181 43.478 12.41 0.00 0.00 3.41
2236 2313 3.186001 GTGTCAAGTTCATGAGCAGTCTG 59.814 47.826 12.41 0.00 0.00 3.51
2239 2316 3.482156 AGTGTCAAGTTCATGAGCAGT 57.518 42.857 12.41 0.00 0.00 4.40
2243 2320 9.862371 ACTACTAATTAGTGTCAAGTTCATGAG 57.138 33.333 25.27 13.25 39.78 2.90
2340 2417 7.260603 CAGCTAAGATTATGTTTCAAAAGGGG 58.739 38.462 0.00 0.00 0.00 4.79
2456 2534 2.886081 AGATGTCTGCAATCGAGTGTC 58.114 47.619 15.06 7.48 0.00 3.67
2457 2535 4.662468 ATAGATGTCTGCAATCGAGTGT 57.338 40.909 15.06 0.00 0.00 3.55
2458 2536 5.277202 CCAAATAGATGTCTGCAATCGAGTG 60.277 44.000 8.83 8.83 0.00 3.51
2459 2537 4.813161 CCAAATAGATGTCTGCAATCGAGT 59.187 41.667 0.00 0.00 0.00 4.18
2460 2538 5.052481 TCCAAATAGATGTCTGCAATCGAG 58.948 41.667 0.00 0.00 0.00 4.04
2496 2575 7.148390 ACGACTCGATCATATACTTATGTGGAG 60.148 40.741 5.20 0.00 37.16 3.86
2503 2582 6.368243 GTCTGGACGACTCGATCATATACTTA 59.632 42.308 5.20 0.00 39.61 2.24
2505 2584 4.691685 GTCTGGACGACTCGATCATATACT 59.308 45.833 5.20 0.00 39.61 2.12
2506 2585 4.451435 TGTCTGGACGACTCGATCATATAC 59.549 45.833 5.20 3.33 43.25 1.47
2520 2599 6.816640 TGGATTAGACTAATTTTGTCTGGACG 59.183 38.462 19.49 0.00 43.66 4.79
2526 2605 8.122952 CACGGATTGGATTAGACTAATTTTGTC 58.877 37.037 9.09 3.19 34.88 3.18
2536 2615 2.627945 TGTGCACGGATTGGATTAGAC 58.372 47.619 13.13 0.00 0.00 2.59
2572 2651 3.650942 TGAAGGTGTAGGGTGACAATTCT 59.349 43.478 0.00 0.00 32.43 2.40
2590 2669 1.486211 ACGGAGATAGGGGTGTGAAG 58.514 55.000 0.00 0.00 0.00 3.02
2591 2670 1.553248 CAACGGAGATAGGGGTGTGAA 59.447 52.381 0.00 0.00 0.00 3.18
2592 2671 1.191535 CAACGGAGATAGGGGTGTGA 58.808 55.000 0.00 0.00 0.00 3.58
2593 2672 1.137086 CTCAACGGAGATAGGGGTGTG 59.863 57.143 0.00 0.00 44.26 3.82
2594 2673 1.486211 CTCAACGGAGATAGGGGTGT 58.514 55.000 0.00 0.00 44.26 4.16
2595 2674 0.105039 GCTCAACGGAGATAGGGGTG 59.895 60.000 0.00 0.00 44.26 4.61
2596 2675 0.032017 AGCTCAACGGAGATAGGGGT 60.032 55.000 0.00 0.00 44.26 4.95
2619 2698 6.892456 TGGGTATCAGGTATATGAGATGAGAC 59.108 42.308 0.00 0.00 32.71 3.36
2620 2699 6.892456 GTGGGTATCAGGTATATGAGATGAGA 59.108 42.308 0.00 0.00 31.44 3.27
2621 2700 6.665248 TGTGGGTATCAGGTATATGAGATGAG 59.335 42.308 0.00 0.00 31.44 2.90
2622 2701 6.561294 TGTGGGTATCAGGTATATGAGATGA 58.439 40.000 0.00 0.00 31.44 2.92
2623 2702 6.857437 TGTGGGTATCAGGTATATGAGATG 57.143 41.667 0.00 0.00 31.44 2.90
2641 2720 1.261354 CGCGTGTGATGATAATGTGGG 59.739 52.381 0.00 0.00 0.00 4.61
2655 2734 2.557056 AGATATATGTACCTGCGCGTGT 59.443 45.455 8.43 4.67 0.00 4.49
2658 2737 2.530177 CCAGATATATGTACCTGCGCG 58.470 52.381 0.00 0.00 0.00 6.86
2659 2738 2.893637 CCCAGATATATGTACCTGCGC 58.106 52.381 0.00 0.00 0.00 6.09
2677 2756 1.301677 CTTCGCTGTCAAAGAGGCCC 61.302 60.000 0.00 0.00 0.00 5.80
2715 2794 5.307926 TGTTAATGATCAGCGCAAATCAA 57.692 34.783 23.09 9.67 35.64 2.57
2721 2800 3.181488 CCCAAATGTTAATGATCAGCGCA 60.181 43.478 11.47 0.00 0.00 6.09
2722 2801 3.374745 CCCAAATGTTAATGATCAGCGC 58.625 45.455 0.00 0.00 0.00 5.92
2724 2803 4.098349 TGAGCCCAAATGTTAATGATCAGC 59.902 41.667 0.09 0.00 0.00 4.26
2739 2818 2.452600 AGGAAGTTTTGTGAGCCCAA 57.547 45.000 0.00 0.00 0.00 4.12
2740 2819 2.452600 AAGGAAGTTTTGTGAGCCCA 57.547 45.000 0.00 0.00 0.00 5.36
2920 3003 3.254892 GAGAAATTCGACAGGTGAGACC 58.745 50.000 0.00 0.00 38.99 3.85
2935 3018 4.082125 GACTTGGGTGTGATTGGAGAAAT 58.918 43.478 0.00 0.00 0.00 2.17
2950 3033 6.127869 ACGATATCGATGAGATAAGACTTGGG 60.128 42.308 30.75 0.00 44.27 4.12
2967 3051 6.530567 TGCTAAGAAAACAACAACGATATCG 58.469 36.000 23.18 23.18 46.33 2.92
3058 3142 1.153369 CGGCGATGATGTTGTCCCT 60.153 57.895 0.00 0.00 0.00 4.20
3121 3205 8.980481 TTTTGTTTCTTTACCTGAGAAGAGAT 57.020 30.769 0.00 0.00 34.84 2.75
3167 3255 6.899393 ATTTGAGCAAATCTAACCACTGAA 57.101 33.333 2.74 0.00 36.34 3.02
3200 3288 2.075426 GACACAACTGGGCCAACAGC 62.075 60.000 8.04 0.00 42.21 4.40
3263 3351 6.314400 GGCACAAATATCGTAAGTTTAGGACA 59.686 38.462 0.00 0.00 39.48 4.02
3264 3352 6.537660 AGGCACAAATATCGTAAGTTTAGGAC 59.462 38.462 0.00 0.00 39.48 3.85
3425 3514 4.261238 GGTCGTTCTCGTAGTGATGATGAT 60.261 45.833 0.00 0.00 38.33 2.45
3426 3515 3.064958 GGTCGTTCTCGTAGTGATGATGA 59.935 47.826 0.00 0.00 38.33 2.92
3427 3516 3.181500 TGGTCGTTCTCGTAGTGATGATG 60.181 47.826 0.00 0.00 38.33 3.07
3449 3538 1.230819 AGGAGGAGGAGGAGGAGGT 60.231 63.158 0.00 0.00 0.00 3.85
3468 3562 3.429141 CAGCGCACCAAGCAGAGG 61.429 66.667 11.47 0.00 46.13 3.69
3469 3563 4.099170 GCAGCGCACCAAGCAGAG 62.099 66.667 11.47 0.00 46.13 3.35
3470 3564 4.631247 AGCAGCGCACCAAGCAGA 62.631 61.111 11.47 0.00 46.13 4.26
3531 3625 9.897744 CTGAAAATGTTATTAGCAGTTTCTTCA 57.102 29.630 24.05 11.61 45.42 3.02
3562 3656 6.834719 CCTTAATTTCAGGAACGAACTTGTCG 60.835 42.308 0.00 0.00 44.08 4.35
3572 3666 5.869344 GCATGGAAACCTTAATTTCAGGAAC 59.131 40.000 9.79 2.24 39.85 3.62
3596 3690 6.371825 AGGCGTGATTAGTTTTAGGAAAGAAG 59.628 38.462 0.00 0.00 0.00 2.85
3617 3715 1.936547 GATGTTTTAGGAGAGCAGGCG 59.063 52.381 0.00 0.00 0.00 5.52
3634 3732 5.404946 CCAAAATTCTTGCACCTGTAGATG 58.595 41.667 0.00 0.00 0.00 2.90
3635 3733 4.463891 CCCAAAATTCTTGCACCTGTAGAT 59.536 41.667 0.00 0.00 0.00 1.98
3636 3734 3.826157 CCCAAAATTCTTGCACCTGTAGA 59.174 43.478 0.00 0.00 0.00 2.59
3637 3735 3.573967 ACCCAAAATTCTTGCACCTGTAG 59.426 43.478 0.00 0.00 0.00 2.74
3638 3736 3.320541 CACCCAAAATTCTTGCACCTGTA 59.679 43.478 0.00 0.00 0.00 2.74
3639 3737 2.102925 CACCCAAAATTCTTGCACCTGT 59.897 45.455 0.00 0.00 0.00 4.00
3640 3738 2.102925 ACACCCAAAATTCTTGCACCTG 59.897 45.455 0.00 0.00 0.00 4.00
3641 3739 2.397597 ACACCCAAAATTCTTGCACCT 58.602 42.857 0.00 0.00 0.00 4.00
3642 3740 2.908688 ACACCCAAAATTCTTGCACC 57.091 45.000 0.00 0.00 0.00 5.01
3647 3746 5.833131 ACACATCACTACACCCAAAATTCTT 59.167 36.000 0.00 0.00 0.00 2.52
3674 3773 2.095008 TGAGACGAGATGCTCAGTCAAC 60.095 50.000 15.94 11.77 36.91 3.18
3704 3844 1.338484 ACTACCACACAGCATGCTCTG 60.338 52.381 19.68 19.85 42.53 3.35
3705 3845 0.979665 ACTACCACACAGCATGCTCT 59.020 50.000 19.68 2.44 42.53 4.09
3706 3846 2.271800 GTACTACCACACAGCATGCTC 58.728 52.381 19.68 0.00 42.53 4.26
3707 3847 1.066143 GGTACTACCACACAGCATGCT 60.066 52.381 16.30 16.30 37.78 3.79
3749 3889 2.146342 CTCACAGGGCAAACAGTAGTG 58.854 52.381 0.00 0.00 0.00 2.74
3750 3890 1.543429 GCTCACAGGGCAAACAGTAGT 60.543 52.381 0.00 0.00 0.00 2.73
3816 3982 2.124695 GGGGACGGATGGAACTGC 60.125 66.667 0.00 0.00 0.00 4.40
3832 3998 1.679680 CATCTAAAGCTGTGCCATGGG 59.320 52.381 15.13 0.00 0.00 4.00
3838 4004 0.806868 TGCTGCATCTAAAGCTGTGC 59.193 50.000 0.00 0.00 40.21 4.57
3858 4149 3.371285 GGTACTACAACTAAGCAAGCTGC 59.629 47.826 0.00 0.00 45.46 5.25
3859 4150 3.933332 GGGTACTACAACTAAGCAAGCTG 59.067 47.826 0.00 0.00 0.00 4.24
3860 4151 3.838903 AGGGTACTACAACTAAGCAAGCT 59.161 43.478 0.00 0.00 0.00 3.74
3861 4152 3.933332 CAGGGTACTACAACTAAGCAAGC 59.067 47.826 0.00 0.00 0.00 4.01
3862 4153 5.401531 TCAGGGTACTACAACTAAGCAAG 57.598 43.478 0.00 0.00 0.00 4.01
3938 4232 2.646719 CGTGCATGCACCAAAGCT 59.353 55.556 37.92 0.00 43.49 3.74
3939 4233 2.431260 CCGTGCATGCACCAAAGC 60.431 61.111 37.92 18.01 43.49 3.51
3940 4234 2.431260 GCCGTGCATGCACCAAAG 60.431 61.111 37.92 25.97 43.49 2.77
4187 4489 0.683412 AAGTAGAACCGGTGGTGGTC 59.317 55.000 8.52 0.12 42.89 4.02
4227 4535 2.617274 GGTCACAACGGCCAGCTTC 61.617 63.158 2.24 0.00 0.00 3.86
4228 4536 2.594592 GGTCACAACGGCCAGCTT 60.595 61.111 2.24 0.00 0.00 3.74
4229 4537 3.832237 CTGGTCACAACGGCCAGCT 62.832 63.158 2.24 0.00 42.54 4.24
4230 4538 3.357079 CTGGTCACAACGGCCAGC 61.357 66.667 2.24 0.00 42.54 4.85
4233 4541 3.041940 CGTCTGGTCACAACGGCC 61.042 66.667 0.00 0.00 31.85 6.13
4234 4542 3.041940 CCGTCTGGTCACAACGGC 61.042 66.667 3.08 0.00 41.06 5.68
4236 4544 3.403057 CGCCGTCTGGTCACAACG 61.403 66.667 0.00 0.00 37.67 4.10
4237 4545 3.041940 CCGCCGTCTGGTCACAAC 61.042 66.667 0.00 0.00 37.67 3.32
4239 4547 4.293648 CACCGCCGTCTGGTCACA 62.294 66.667 0.00 0.00 37.72 3.58
4271 4579 2.963371 GACGAGGAGCGAACACCT 59.037 61.111 0.00 0.00 44.57 4.00
4272 4580 2.504244 CGACGAGGAGCGAACACC 60.504 66.667 0.00 0.00 44.57 4.16
4273 4581 1.796749 GACGACGAGGAGCGAACAC 60.797 63.158 0.00 0.00 44.57 3.32
4274 4582 2.559840 GACGACGAGGAGCGAACA 59.440 61.111 0.00 0.00 44.57 3.18
4275 4583 2.573689 CGACGACGAGGAGCGAAC 60.574 66.667 0.00 0.00 44.57 3.95
4276 4584 3.796443 CCGACGACGAGGAGCGAA 61.796 66.667 9.28 0.00 44.57 4.70
4277 4585 3.647649 TACCGACGACGAGGAGCGA 62.648 63.158 18.00 1.62 44.57 4.93
4298 4626 6.312918 TCTCCGATTATAGTTTCACAACAAGC 59.687 38.462 0.00 0.00 35.05 4.01
4299 4627 7.759886 TCTCTCCGATTATAGTTTCACAACAAG 59.240 37.037 0.00 0.00 35.05 3.16
4310 4638 7.576666 GCAATGTCATCTCTCTCCGATTATAGT 60.577 40.741 0.00 0.00 0.00 2.12
4311 4639 6.751425 GCAATGTCATCTCTCTCCGATTATAG 59.249 42.308 0.00 0.00 0.00 1.31
4312 4640 6.350528 GGCAATGTCATCTCTCTCCGATTATA 60.351 42.308 0.00 0.00 0.00 0.98
4328 4656 4.021559 CATGGCCTGGCAATGTCA 57.978 55.556 25.10 12.05 35.43 3.58
4332 4661 1.985662 CCACACATGGCCTGGCAAT 60.986 57.895 22.05 12.75 39.82 3.56
4350 4679 0.969894 AGACCAGCCAGTAGTGTCAC 59.030 55.000 0.00 0.00 0.00 3.67
4351 4680 1.203063 AGAGACCAGCCAGTAGTGTCA 60.203 52.381 0.00 0.00 0.00 3.58
4352 4681 1.474879 GAGAGACCAGCCAGTAGTGTC 59.525 57.143 0.00 0.00 0.00 3.67
4353 4682 1.551452 GAGAGACCAGCCAGTAGTGT 58.449 55.000 0.00 0.00 0.00 3.55
4354 4683 0.453793 CGAGAGACCAGCCAGTAGTG 59.546 60.000 0.00 0.00 0.00 2.74
4355 4684 1.316706 GCGAGAGACCAGCCAGTAGT 61.317 60.000 0.00 0.00 0.00 2.73
4356 4685 1.435515 GCGAGAGACCAGCCAGTAG 59.564 63.158 0.00 0.00 0.00 2.57
4357 4686 3.604629 GCGAGAGACCAGCCAGTA 58.395 61.111 0.00 0.00 0.00 2.74
4378 4717 1.667722 TGATCCCGATCATGGCGAG 59.332 57.895 3.22 0.00 42.42 5.03
4399 4738 3.732212 TCTAATGAACAGCCATGATCCG 58.268 45.455 0.00 0.00 0.00 4.18
4401 4740 6.709397 TGAGAATCTAATGAACAGCCATGATC 59.291 38.462 0.00 0.00 34.92 2.92
4435 4777 3.028130 ACCGTTTGGGAAACTTGAACAT 58.972 40.909 0.00 0.00 40.75 2.71
4438 4780 3.090037 TCAACCGTTTGGGAAACTTGAA 58.910 40.909 0.00 0.00 40.75 2.69
4475 4821 3.526534 CATGCATGAATTTGCCATCACA 58.473 40.909 22.59 0.00 42.06 3.58
4476 4822 2.869801 CCATGCATGAATTTGCCATCAC 59.130 45.455 28.31 0.00 42.06 3.06
4486 4832 2.109431 GTGCGACCCATGCATGAAT 58.891 52.632 28.31 15.04 45.34 2.57
4523 4872 3.883744 AACAGAGTGCTTCCCCGCG 62.884 63.158 0.00 0.00 0.00 6.46
4548 4899 1.210931 CAACAATGGCGGACTGCTG 59.789 57.895 6.16 0.00 45.43 4.41
4549 4900 2.629656 GCAACAATGGCGGACTGCT 61.630 57.895 6.16 0.00 45.43 4.24
4550 4901 2.126346 GCAACAATGGCGGACTGC 60.126 61.111 0.00 0.00 45.38 4.40
4557 4908 2.719454 CGGTTAACGCAACAATGGC 58.281 52.632 0.00 0.00 39.04 4.40
4595 4947 3.918220 CTGTCAATCGCCGCTCGC 61.918 66.667 0.00 0.00 38.27 5.03
4635 4987 1.982395 CTCACCTAGTCGCCCACCA 60.982 63.158 0.00 0.00 0.00 4.17
4647 5017 0.833834 CACCTCACCTCACCTCACCT 60.834 60.000 0.00 0.00 0.00 4.00
4675 5045 2.224159 AATCACTGACCCACCGCCT 61.224 57.895 0.00 0.00 0.00 5.52
4679 5049 1.156736 CGAACAATCACTGACCCACC 58.843 55.000 0.00 0.00 0.00 4.61
4680 5050 1.878953 ACGAACAATCACTGACCCAC 58.121 50.000 0.00 0.00 0.00 4.61
4681 5051 2.217750 CAACGAACAATCACTGACCCA 58.782 47.619 0.00 0.00 0.00 4.51
4721 5092 1.404391 CATCAATCACAGCTTGCTCCC 59.596 52.381 0.00 0.00 0.00 4.30
4723 5094 1.404391 CCCATCAATCACAGCTTGCTC 59.596 52.381 0.00 0.00 0.00 4.26
4724 5095 1.471119 CCCATCAATCACAGCTTGCT 58.529 50.000 0.00 0.00 0.00 3.91
4725 5096 0.179119 GCCCATCAATCACAGCTTGC 60.179 55.000 0.00 0.00 0.00 4.01
4726 5097 0.458669 GGCCCATCAATCACAGCTTG 59.541 55.000 0.00 0.00 0.00 4.01
4727 5098 1.033746 CGGCCCATCAATCACAGCTT 61.034 55.000 0.00 0.00 0.00 3.74
4728 5099 1.452651 CGGCCCATCAATCACAGCT 60.453 57.895 0.00 0.00 0.00 4.24
4729 5100 0.463654 TACGGCCCATCAATCACAGC 60.464 55.000 0.00 0.00 0.00 4.40
4732 5103 1.404035 GGTTTACGGCCCATCAATCAC 59.596 52.381 0.00 0.00 0.00 3.06
4760 5131 1.131315 GCGAGGAGAAAAAGGTGATGC 59.869 52.381 0.00 0.00 0.00 3.91
4761 5132 2.704572 AGCGAGGAGAAAAAGGTGATG 58.295 47.619 0.00 0.00 0.00 3.07
4762 5133 3.339141 GAAGCGAGGAGAAAAAGGTGAT 58.661 45.455 0.00 0.00 0.00 3.06
4763 5134 2.550208 GGAAGCGAGGAGAAAAAGGTGA 60.550 50.000 0.00 0.00 0.00 4.02
4764 5135 1.807142 GGAAGCGAGGAGAAAAAGGTG 59.193 52.381 0.00 0.00 0.00 4.00
4765 5136 1.700186 AGGAAGCGAGGAGAAAAAGGT 59.300 47.619 0.00 0.00 0.00 3.50
4766 5137 2.481289 AGGAAGCGAGGAGAAAAAGG 57.519 50.000 0.00 0.00 0.00 3.11
4767 5138 5.178797 TGAATAGGAAGCGAGGAGAAAAAG 58.821 41.667 0.00 0.00 0.00 2.27
4768 5139 5.160607 TGAATAGGAAGCGAGGAGAAAAA 57.839 39.130 0.00 0.00 0.00 1.94
4769 5140 4.819105 TGAATAGGAAGCGAGGAGAAAA 57.181 40.909 0.00 0.00 0.00 2.29
4770 5141 4.819105 TTGAATAGGAAGCGAGGAGAAA 57.181 40.909 0.00 0.00 0.00 2.52
4773 5144 3.556004 GGGATTGAATAGGAAGCGAGGAG 60.556 52.174 0.00 0.00 0.00 3.69
4775 5146 2.772287 GGGATTGAATAGGAAGCGAGG 58.228 52.381 0.00 0.00 0.00 4.63
4776 5147 2.408050 CGGGATTGAATAGGAAGCGAG 58.592 52.381 0.00 0.00 0.00 5.03
4777 5148 1.540363 GCGGGATTGAATAGGAAGCGA 60.540 52.381 0.00 0.00 0.00 4.93
4779 5150 1.604278 GTGCGGGATTGAATAGGAAGC 59.396 52.381 0.00 0.00 0.00 3.86
4780 5151 2.874701 CTGTGCGGGATTGAATAGGAAG 59.125 50.000 0.00 0.00 0.00 3.46
4782 5153 1.837439 ACTGTGCGGGATTGAATAGGA 59.163 47.619 0.00 0.00 0.00 2.94
4785 5156 3.270027 CTTCACTGTGCGGGATTGAATA 58.730 45.455 2.12 0.00 0.00 1.75
4786 5157 2.086869 CTTCACTGTGCGGGATTGAAT 58.913 47.619 2.12 0.00 0.00 2.57
4851 5276 4.357918 ACATGGGTAGCTGGCTTATTAG 57.642 45.455 0.00 0.00 0.00 1.73
4853 5278 3.669939 AACATGGGTAGCTGGCTTATT 57.330 42.857 0.00 0.00 0.00 1.40
4854 5279 3.290710 CAAACATGGGTAGCTGGCTTAT 58.709 45.455 0.00 0.00 0.00 1.73
4856 5281 1.549203 CAAACATGGGTAGCTGGCTT 58.451 50.000 0.00 0.00 0.00 4.35
4857 5282 0.967380 GCAAACATGGGTAGCTGGCT 60.967 55.000 0.00 0.00 0.00 4.75
4858 5283 1.512694 GCAAACATGGGTAGCTGGC 59.487 57.895 0.00 0.00 0.00 4.85
4859 5284 0.611618 TGGCAAACATGGGTAGCTGG 60.612 55.000 0.00 0.00 0.00 4.85
4860 5285 0.527565 GTGGCAAACATGGGTAGCTG 59.472 55.000 0.00 0.00 0.00 4.24
4861 5286 0.611896 GGTGGCAAACATGGGTAGCT 60.612 55.000 0.00 0.00 0.00 3.32
4862 5287 1.604147 GGGTGGCAAACATGGGTAGC 61.604 60.000 0.00 0.00 0.00 3.58
4863 5288 0.970427 GGGGTGGCAAACATGGGTAG 60.970 60.000 0.00 0.00 0.00 3.18
4864 5289 1.077625 GGGGTGGCAAACATGGGTA 59.922 57.895 0.00 0.00 0.00 3.69
4865 5290 2.203773 GGGGTGGCAAACATGGGT 60.204 61.111 0.00 0.00 0.00 4.51
4866 5291 2.203758 TGGGGTGGCAAACATGGG 60.204 61.111 0.00 0.00 0.00 4.00
4867 5292 2.582493 GGTGGGGTGGCAAACATGG 61.582 63.158 0.00 0.00 0.00 3.66
4868 5293 2.582493 GGGTGGGGTGGCAAACATG 61.582 63.158 0.00 0.00 0.00 3.21
4869 5294 2.203773 GGGTGGGGTGGCAAACAT 60.204 61.111 0.00 0.00 0.00 2.71
4870 5295 3.755626 TGGGTGGGGTGGCAAACA 61.756 61.111 0.00 0.00 0.00 2.83
4871 5296 3.230990 GTGGGTGGGGTGGCAAAC 61.231 66.667 0.00 0.00 0.00 2.93
4872 5297 3.755626 TGTGGGTGGGGTGGCAAA 61.756 61.111 0.00 0.00 0.00 3.68
4873 5298 4.531426 GTGTGGGTGGGGTGGCAA 62.531 66.667 0.00 0.00 0.00 4.52
4876 5301 4.596585 GGTGTGTGGGTGGGGTGG 62.597 72.222 0.00 0.00 0.00 4.61
4877 5302 4.596585 GGGTGTGTGGGTGGGGTG 62.597 72.222 0.00 0.00 0.00 4.61
4879 5304 3.583882 GATGGGTGTGTGGGTGGGG 62.584 68.421 0.00 0.00 0.00 4.96
4880 5305 2.035626 GATGGGTGTGTGGGTGGG 59.964 66.667 0.00 0.00 0.00 4.61
4881 5306 2.035626 GGATGGGTGTGTGGGTGG 59.964 66.667 0.00 0.00 0.00 4.61
4882 5307 0.680921 GATGGATGGGTGTGTGGGTG 60.681 60.000 0.00 0.00 0.00 4.61
4883 5308 1.691219 GATGGATGGGTGTGTGGGT 59.309 57.895 0.00 0.00 0.00 4.51
4884 5309 1.076777 GGATGGATGGGTGTGTGGG 60.077 63.158 0.00 0.00 0.00 4.61
4889 5314 0.552848 GTGGATGGATGGATGGGTGT 59.447 55.000 0.00 0.00 0.00 4.16
4896 5321 3.949586 TTGCTATTGTGGATGGATGGA 57.050 42.857 0.00 0.00 0.00 3.41
4922 5355 1.198637 GCGCTGGTATAGTACTACGGG 59.801 57.143 4.31 1.94 0.00 5.28
4923 5356 1.198637 GGCGCTGGTATAGTACTACGG 59.801 57.143 7.64 0.00 0.00 4.02
4924 5357 1.875514 TGGCGCTGGTATAGTACTACG 59.124 52.381 7.64 4.41 0.00 3.51
4925 5358 2.883386 AGTGGCGCTGGTATAGTACTAC 59.117 50.000 7.64 0.00 0.00 2.73
4926 5359 2.882761 CAGTGGCGCTGGTATAGTACTA 59.117 50.000 20.17 4.77 41.42 1.82
4927 5360 1.681793 CAGTGGCGCTGGTATAGTACT 59.318 52.381 20.17 0.00 41.42 2.73
4928 5361 2.135664 CAGTGGCGCTGGTATAGTAC 57.864 55.000 20.17 0.00 41.42 2.73
4945 5378 3.738281 GTAGTACTACTGGCATGGCACAG 60.738 52.174 23.17 19.33 40.48 3.66
4948 5381 1.407618 CGTAGTACTACTGGCATGGCA 59.592 52.381 26.36 21.97 34.04 4.92
4949 5382 1.868519 GCGTAGTACTACTGGCATGGC 60.869 57.143 26.36 17.85 34.04 4.40
4950 5383 1.681793 AGCGTAGTACTACTGGCATGG 59.318 52.381 26.36 12.86 33.30 3.66
4951 5384 2.099263 ACAGCGTAGTACTACTGGCATG 59.901 50.000 26.36 21.84 33.30 4.06
4952 5385 2.376109 ACAGCGTAGTACTACTGGCAT 58.624 47.619 26.36 14.65 33.30 4.40
4953 5386 1.830279 ACAGCGTAGTACTACTGGCA 58.170 50.000 26.36 0.00 33.30 4.92
4954 5387 2.286891 GCTACAGCGTAGTACTACTGGC 60.287 54.545 26.36 22.73 34.04 4.85
4955 5388 2.290093 GGCTACAGCGTAGTACTACTGG 59.710 54.545 26.36 18.40 43.26 4.00
4956 5389 3.002451 CAGGCTACAGCGTAGTACTACTG 59.998 52.174 26.36 21.27 43.26 2.74
4957 5390 3.204526 CAGGCTACAGCGTAGTACTACT 58.795 50.000 26.36 13.18 43.26 2.57
4958 5391 2.941720 ACAGGCTACAGCGTAGTACTAC 59.058 50.000 21.06 21.06 43.26 2.73
4959 5392 3.272574 ACAGGCTACAGCGTAGTACTA 57.727 47.619 14.32 0.00 43.26 1.82
4964 5397 3.553597 GCTACAGGCTACAGCGTAG 57.446 57.895 10.29 10.29 43.26 3.51
5026 5459 1.871345 CTCTAGCGCACTCTGCACG 60.871 63.158 11.47 0.00 45.36 5.34
5028 5461 2.182791 GCTCTAGCGCACTCTGCA 59.817 61.111 11.47 0.00 45.36 4.41
5038 5471 3.438017 CTCCAGTGCCCGCTCTAGC 62.438 68.421 0.00 0.00 37.78 3.42
5040 5473 3.461773 GCTCCAGTGCCCGCTCTA 61.462 66.667 0.00 0.00 0.00 2.43
5178 5626 1.266178 CCAAAACAGGGTGGGGATTC 58.734 55.000 0.00 0.00 0.00 2.52
5179 5627 0.835971 GCCAAAACAGGGTGGGGATT 60.836 55.000 0.00 0.00 35.28 3.01
5191 5648 2.425394 GCGCACGAATCGCCAAAAC 61.425 57.895 0.30 0.00 46.18 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.