Multiple sequence alignment - TraesCS5A01G473100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G473100 chr5A 100.000 4637 0 0 1 4637 649631926 649627290 0.000000e+00 8564.0
1 TraesCS5A01G473100 chr5A 85.646 209 24 6 1173 1378 649643146 649642941 1.010000e-51 215.0
2 TraesCS5A01G473100 chr5B 89.982 2166 148 36 2399 4516 657338293 657336149 0.000000e+00 2734.0
3 TraesCS5A01G473100 chr5B 87.246 1082 58 32 494 1534 657340206 657339164 0.000000e+00 1160.0
4 TraesCS5A01G473100 chr5B 85.484 434 26 18 1797 2212 657338999 657338585 7.180000e-113 418.0
5 TraesCS5A01G473100 chr5B 81.973 294 29 8 10 279 657340609 657340316 1.300000e-55 228.0
6 TraesCS5A01G473100 chr5B 85.922 206 23 6 1173 1375 657419787 657419585 1.010000e-51 215.0
7 TraesCS5A01G473100 chr5B 88.462 156 10 2 1604 1759 657339133 657338986 1.020000e-41 182.0
8 TraesCS5A01G473100 chr5D 93.617 1269 52 15 2636 3897 521147396 521146150 0.000000e+00 1868.0
9 TraesCS5A01G473100 chr5D 84.108 1183 90 44 430 1534 521149601 521148439 0.000000e+00 1053.0
10 TraesCS5A01G473100 chr5D 80.822 584 87 10 3998 4563 521145305 521144729 7.130000e-118 435.0
11 TraesCS5A01G473100 chr5D 86.306 314 18 10 1919 2212 521148087 521147779 7.490000e-83 318.0
12 TraesCS5A01G473100 chr5D 86.893 206 21 6 1173 1375 521261193 521260991 4.670000e-55 226.0
13 TraesCS5A01G473100 chr5D 88.571 175 8 5 2229 2399 521147701 521147535 7.870000e-48 202.0
14 TraesCS5A01G473100 chr5D 90.526 95 6 2 1793 1885 521148182 521148089 6.300000e-24 122.0
15 TraesCS5A01G473100 chr5D 77.778 225 28 6 10 213 521149977 521149754 8.150000e-23 119.0
16 TraesCS5A01G473100 chr2A 94.444 108 6 0 276 383 549617129 549617236 2.870000e-37 167.0
17 TraesCS5A01G473100 chr1A 92.308 117 9 0 280 396 436435142 436435026 2.870000e-37 167.0
18 TraesCS5A01G473100 chr3B 92.174 115 9 0 279 393 12156968 12156854 3.710000e-36 163.0
19 TraesCS5A01G473100 chr3B 85.227 88 11 2 3511 3597 602587999 602588085 6.390000e-14 89.8
20 TraesCS5A01G473100 chr3A 91.453 117 10 0 274 390 256934683 256934799 1.340000e-35 161.0
21 TraesCS5A01G473100 chr3A 92.793 111 7 1 280 390 265543338 265543447 4.800000e-35 159.0
22 TraesCS5A01G473100 chr3A 87.640 89 9 2 3511 3598 598978360 598978447 8.210000e-18 102.0
23 TraesCS5A01G473100 chr1D 92.105 114 9 0 279 392 420111 419998 1.340000e-35 161.0
24 TraesCS5A01G473100 chr6A 90.756 119 11 0 280 398 537040708 537040826 4.800000e-35 159.0
25 TraesCS5A01G473100 chr2D 90.756 119 10 1 280 397 272263064 272263182 1.730000e-34 158.0
26 TraesCS5A01G473100 chr4A 84.932 146 17 5 280 424 343923691 343923550 4.840000e-30 143.0
27 TraesCS5A01G473100 chr3D 87.640 89 9 2 3511 3598 456102858 456102945 8.210000e-18 102.0
28 TraesCS5A01G473100 chr7A 92.982 57 4 0 3542 3598 682205139 682205083 2.970000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G473100 chr5A 649627290 649631926 4636 True 8564.000000 8564 100.000000 1 4637 1 chr5A.!!$R1 4636
1 TraesCS5A01G473100 chr5B 657336149 657340609 4460 True 944.400000 2734 86.629400 10 4516 5 chr5B.!!$R2 4506
2 TraesCS5A01G473100 chr5D 521144729 521149977 5248 True 588.142857 1868 85.961143 10 4563 7 chr5D.!!$R2 4553

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
757 875 0.029035 CGCGCCTACTACTACCAGTG 59.971 60.0 0.0 0.0 0.00 3.66 F
1552 1732 0.043138 GTAGACGAGACGAGTAGCGC 60.043 60.0 0.0 0.0 46.04 5.92 F
2532 2940 0.173481 TGGTTCAGAGATTCGGAGCG 59.827 55.0 0.0 0.0 0.00 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1889 2154 0.175073 GTACCTCCTCGCCGTTCATT 59.825 55.0 0.00 0.00 0.00 2.57 R
2629 3039 0.321034 TGAAGCTGCAGCACGAGAAT 60.321 50.0 38.24 15.14 45.16 2.40 R
3804 4241 0.106569 AGCCCATGAATCGCATCCAA 60.107 50.0 0.00 0.00 34.15 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 2.135933 GAGGTATAGCATGAACCGTGC 58.864 52.381 4.48 3.14 45.65 5.34
73 74 1.644786 CGAGCGAACAAATCCCACCC 61.645 60.000 0.00 0.00 0.00 4.61
88 100 2.028748 CCCACCCAAATGAGCTTCTTTG 60.029 50.000 12.58 12.58 33.20 2.77
106 118 4.783841 CGCAGAAGCAACGCTCGC 62.784 66.667 0.00 0.00 38.25 5.03
114 126 0.670546 AGCAACGCTCGCTGTAACAT 60.671 50.000 0.00 0.00 38.60 2.71
126 145 2.286294 GCTGTAACATGAGCATTCCTCG 59.714 50.000 0.00 0.00 43.82 4.63
128 147 3.785486 TGTAACATGAGCATTCCTCGAG 58.215 45.455 5.13 5.13 43.82 4.04
155 176 2.347731 GATCCTTTCCACCACGAACTC 58.652 52.381 0.00 0.00 0.00 3.01
156 177 0.032952 TCCTTTCCACCACGAACTCG 59.967 55.000 0.00 0.00 46.33 4.18
157 178 0.949105 CCTTTCCACCACGAACTCGG 60.949 60.000 3.88 0.00 44.95 4.63
159 180 3.851845 TTCCACCACGAACTCGGCG 62.852 63.158 0.00 0.00 44.95 6.46
162 185 2.355481 ACCACGAACTCGGCGTTC 60.355 61.111 6.85 3.17 46.78 3.95
194 218 1.622312 ACAGGGAGTTCTTACCGGTTC 59.378 52.381 15.04 1.90 28.03 3.62
217 241 2.450345 CGCCGGAGAAAAGCGTACC 61.450 63.158 5.05 0.00 44.65 3.34
218 242 2.450345 GCCGGAGAAAAGCGTACCG 61.450 63.158 5.05 0.00 42.67 4.02
270 314 2.733593 GCACGTTCGTTCGCTCCT 60.734 61.111 0.00 0.00 0.00 3.69
274 318 2.720758 CGTTCGTTCGCTCCTGCAG 61.721 63.158 6.78 6.78 39.64 4.41
281 325 2.202623 CGCTCCTGCAGGACGTAC 60.203 66.667 32.11 22.03 39.78 3.67
283 327 1.592223 GCTCCTGCAGGACGTACTT 59.408 57.895 32.00 0.00 39.78 2.24
284 328 0.458716 GCTCCTGCAGGACGTACTTC 60.459 60.000 32.00 10.48 39.78 3.01
287 331 1.544691 TCCTGCAGGACGTACTTCTTC 59.455 52.381 32.00 0.00 39.78 2.87
289 333 0.242825 TGCAGGACGTACTTCTTCCG 59.757 55.000 0.00 0.00 39.17 4.30
290 334 0.243095 GCAGGACGTACTTCTTCCGT 59.757 55.000 0.00 0.00 39.17 4.69
291 335 1.336609 GCAGGACGTACTTCTTCCGTT 60.337 52.381 0.00 0.00 39.17 4.44
292 336 2.593257 CAGGACGTACTTCTTCCGTTC 58.407 52.381 0.00 0.00 39.17 3.95
293 337 2.228343 CAGGACGTACTTCTTCCGTTCT 59.772 50.000 0.00 0.00 40.93 3.01
294 338 2.228343 AGGACGTACTTCTTCCGTTCTG 59.772 50.000 0.00 0.00 38.91 3.02
295 339 2.227388 GGACGTACTTCTTCCGTTCTGA 59.773 50.000 0.00 0.00 34.51 3.27
296 340 3.304928 GGACGTACTTCTTCCGTTCTGAA 60.305 47.826 0.00 0.00 34.51 3.02
297 341 4.483311 GACGTACTTCTTCCGTTCTGAAT 58.517 43.478 0.00 0.00 34.51 2.57
298 342 4.879598 ACGTACTTCTTCCGTTCTGAATT 58.120 39.130 0.00 0.00 0.00 2.17
299 343 6.017400 ACGTACTTCTTCCGTTCTGAATTA 57.983 37.500 0.00 0.00 0.00 1.40
300 344 5.860716 ACGTACTTCTTCCGTTCTGAATTAC 59.139 40.000 0.00 0.00 0.00 1.89
301 345 6.091437 CGTACTTCTTCCGTTCTGAATTACT 58.909 40.000 0.00 0.00 0.00 2.24
302 346 6.585322 CGTACTTCTTCCGTTCTGAATTACTT 59.415 38.462 0.00 0.00 0.00 2.24
303 347 6.787085 ACTTCTTCCGTTCTGAATTACTTG 57.213 37.500 0.00 0.00 0.00 3.16
304 348 6.289064 ACTTCTTCCGTTCTGAATTACTTGT 58.711 36.000 0.00 0.00 0.00 3.16
305 349 6.424207 ACTTCTTCCGTTCTGAATTACTTGTC 59.576 38.462 0.00 0.00 0.00 3.18
306 350 4.921515 TCTTCCGTTCTGAATTACTTGTCG 59.078 41.667 0.00 0.00 0.00 4.35
307 351 2.991190 TCCGTTCTGAATTACTTGTCGC 59.009 45.455 0.00 0.00 0.00 5.19
308 352 2.734606 CCGTTCTGAATTACTTGTCGCA 59.265 45.455 0.00 0.00 0.00 5.10
309 353 3.181530 CCGTTCTGAATTACTTGTCGCAG 60.182 47.826 0.00 0.00 0.00 5.18
310 354 3.181530 CGTTCTGAATTACTTGTCGCAGG 60.182 47.826 0.00 0.00 0.00 4.85
311 355 3.678056 TCTGAATTACTTGTCGCAGGT 57.322 42.857 0.00 0.91 0.00 4.00
312 356 4.794278 TCTGAATTACTTGTCGCAGGTA 57.206 40.909 0.00 0.00 0.00 3.08
313 357 5.339008 TCTGAATTACTTGTCGCAGGTAT 57.661 39.130 3.46 0.00 0.00 2.73
314 358 5.109210 TCTGAATTACTTGTCGCAGGTATG 58.891 41.667 3.46 0.00 0.00 2.39
315 359 4.188462 TGAATTACTTGTCGCAGGTATGG 58.812 43.478 3.46 0.00 0.00 2.74
316 360 4.081365 TGAATTACTTGTCGCAGGTATGGA 60.081 41.667 3.46 0.00 0.00 3.41
317 361 4.689612 ATTACTTGTCGCAGGTATGGAT 57.310 40.909 3.46 0.00 0.00 3.41
318 362 2.315925 ACTTGTCGCAGGTATGGATG 57.684 50.000 0.00 0.00 0.00 3.51
319 363 1.555075 ACTTGTCGCAGGTATGGATGT 59.445 47.619 0.00 0.00 0.00 3.06
320 364 2.764010 ACTTGTCGCAGGTATGGATGTA 59.236 45.455 0.00 0.00 0.00 2.29
321 365 3.388024 ACTTGTCGCAGGTATGGATGTAT 59.612 43.478 0.00 0.00 0.00 2.29
322 366 3.660501 TGTCGCAGGTATGGATGTATC 57.339 47.619 0.00 0.00 0.00 2.24
323 367 3.230976 TGTCGCAGGTATGGATGTATCT 58.769 45.455 0.00 0.00 0.00 1.98
324 368 4.403734 TGTCGCAGGTATGGATGTATCTA 58.596 43.478 0.00 0.00 0.00 1.98
325 369 4.459337 TGTCGCAGGTATGGATGTATCTAG 59.541 45.833 0.00 0.00 0.00 2.43
326 370 4.700692 GTCGCAGGTATGGATGTATCTAGA 59.299 45.833 0.00 0.00 0.00 2.43
327 371 5.358442 GTCGCAGGTATGGATGTATCTAGAT 59.642 44.000 10.73 10.73 0.00 1.98
328 372 5.358160 TCGCAGGTATGGATGTATCTAGATG 59.642 44.000 15.79 0.00 0.00 2.90
329 373 5.126222 CGCAGGTATGGATGTATCTAGATGT 59.874 44.000 15.79 1.25 0.00 3.06
330 374 6.318900 CGCAGGTATGGATGTATCTAGATGTA 59.681 42.308 15.79 4.44 0.00 2.29
331 375 7.013750 CGCAGGTATGGATGTATCTAGATGTAT 59.986 40.741 15.79 9.11 0.00 2.29
332 376 8.700051 GCAGGTATGGATGTATCTAGATGTATT 58.300 37.037 15.79 0.00 0.00 1.89
363 407 5.856126 GGATATATCCATTTTTGCGACGA 57.144 39.130 24.41 0.00 46.38 4.20
364 408 5.858475 GGATATATCCATTTTTGCGACGAG 58.142 41.667 24.41 0.00 46.38 4.18
365 409 5.408604 GGATATATCCATTTTTGCGACGAGT 59.591 40.000 24.41 0.00 46.38 4.18
366 410 6.588756 GGATATATCCATTTTTGCGACGAGTA 59.411 38.462 24.41 0.00 46.38 2.59
367 411 7.117236 GGATATATCCATTTTTGCGACGAGTAA 59.883 37.037 24.41 0.00 46.38 2.24
368 412 6.861065 ATATCCATTTTTGCGACGAGTAAT 57.139 33.333 0.00 0.00 0.00 1.89
369 413 5.560966 ATCCATTTTTGCGACGAGTAATT 57.439 34.783 0.00 0.00 0.00 1.40
370 414 5.365403 TCCATTTTTGCGACGAGTAATTT 57.635 34.783 0.00 0.00 0.00 1.82
371 415 5.150683 TCCATTTTTGCGACGAGTAATTTG 58.849 37.500 0.00 0.00 0.00 2.32
372 416 5.049336 TCCATTTTTGCGACGAGTAATTTGA 60.049 36.000 0.00 0.00 0.00 2.69
373 417 5.627367 CCATTTTTGCGACGAGTAATTTGAA 59.373 36.000 0.00 0.00 0.00 2.69
374 418 6.143118 CCATTTTTGCGACGAGTAATTTGAAA 59.857 34.615 0.00 0.00 0.00 2.69
375 419 6.485253 TTTTTGCGACGAGTAATTTGAAAC 57.515 33.333 0.00 0.00 0.00 2.78
376 420 3.427516 TGCGACGAGTAATTTGAAACG 57.572 42.857 0.00 0.00 0.00 3.60
377 421 2.156117 TGCGACGAGTAATTTGAAACGG 59.844 45.455 0.00 0.00 0.00 4.44
378 422 2.409378 GCGACGAGTAATTTGAAACGGA 59.591 45.455 0.00 0.00 0.00 4.69
379 423 3.481467 GCGACGAGTAATTTGAAACGGAG 60.481 47.826 0.00 0.00 0.00 4.63
380 424 3.060363 CGACGAGTAATTTGAAACGGAGG 59.940 47.826 0.00 0.00 0.00 4.30
381 425 3.332034 ACGAGTAATTTGAAACGGAGGG 58.668 45.455 0.00 0.00 0.00 4.30
382 426 3.007182 ACGAGTAATTTGAAACGGAGGGA 59.993 43.478 0.00 0.00 0.00 4.20
383 427 3.998341 CGAGTAATTTGAAACGGAGGGAA 59.002 43.478 0.00 0.00 0.00 3.97
384 428 4.634443 CGAGTAATTTGAAACGGAGGGAAT 59.366 41.667 0.00 0.00 0.00 3.01
385 429 5.813672 CGAGTAATTTGAAACGGAGGGAATA 59.186 40.000 0.00 0.00 0.00 1.75
386 430 6.314400 CGAGTAATTTGAAACGGAGGGAATAA 59.686 38.462 0.00 0.00 0.00 1.40
401 445 7.328737 CGGAGGGAATAATAATCAAGAACGTAG 59.671 40.741 0.00 0.00 0.00 3.51
404 448 7.866393 AGGGAATAATAATCAAGAACGTAGTCG 59.134 37.037 0.00 0.00 45.00 4.18
428 485 9.302345 TCGCAACAACAATAAAACTGAATTTTA 57.698 25.926 0.00 0.00 44.83 1.52
433 505 9.026074 ACAACAATAAAACTGAATTTTACACCG 57.974 29.630 0.00 0.00 43.82 4.94
457 529 2.226437 CACCAACCCTGACGAGAATTTG 59.774 50.000 0.00 0.00 0.00 2.32
464 536 2.263077 CTGACGAGAATTTGGACGGAG 58.737 52.381 0.00 0.00 0.00 4.63
489 561 3.538591 CAACCAGATAGCATCAGAGCAA 58.461 45.455 0.00 0.00 36.85 3.91
491 563 2.158842 ACCAGATAGCATCAGAGCAACC 60.159 50.000 0.00 0.00 36.85 3.77
492 564 2.492012 CAGATAGCATCAGAGCAACCC 58.508 52.381 0.00 0.00 36.85 4.11
493 565 2.121948 AGATAGCATCAGAGCAACCCA 58.878 47.619 0.00 0.00 36.85 4.51
494 566 2.158842 AGATAGCATCAGAGCAACCCAC 60.159 50.000 0.00 0.00 36.85 4.61
495 567 0.253044 TAGCATCAGAGCAACCCACC 59.747 55.000 0.00 0.00 36.85 4.61
496 568 2.048603 GCATCAGAGCAACCCACCC 61.049 63.158 0.00 0.00 0.00 4.61
497 569 1.379916 CATCAGAGCAACCCACCCA 59.620 57.895 0.00 0.00 0.00 4.51
498 570 0.962356 CATCAGAGCAACCCACCCAC 60.962 60.000 0.00 0.00 0.00 4.61
499 571 2.142292 ATCAGAGCAACCCACCCACC 62.142 60.000 0.00 0.00 0.00 4.61
500 572 2.450502 AGAGCAACCCACCCACCT 60.451 61.111 0.00 0.00 0.00 4.00
506 578 2.522367 AACCCACCCACCTACCGTG 61.522 63.158 0.00 0.00 42.62 4.94
513 608 2.264794 CACCTACCGTGGCAGTCC 59.735 66.667 0.00 0.00 38.96 3.85
610 707 0.311165 CTACAGTACTGCCGATCGGG 59.689 60.000 33.98 21.22 39.58 5.14
728 843 4.182433 GCTCTAGCCAGCACCCCC 62.182 72.222 0.00 0.00 39.43 5.40
755 873 0.307146 GTCGCGCCTACTACTACCAG 59.693 60.000 0.00 0.00 0.00 4.00
756 874 0.107508 TCGCGCCTACTACTACCAGT 60.108 55.000 0.00 0.00 0.00 4.00
757 875 0.029035 CGCGCCTACTACTACCAGTG 59.971 60.000 0.00 0.00 0.00 3.66
758 876 0.384669 GCGCCTACTACTACCAGTGG 59.615 60.000 7.91 7.91 32.47 4.00
759 877 1.760192 CGCCTACTACTACCAGTGGT 58.240 55.000 20.91 20.91 42.72 4.16
781 899 1.192428 GGTGTGGTAGGAGTGGTAGG 58.808 60.000 0.00 0.00 0.00 3.18
813 932 2.852075 TTGTTGGAGCCGGACCCT 60.852 61.111 5.05 0.00 0.00 4.34
1097 1251 3.322466 CGGCACCCTGGACTTCCT 61.322 66.667 0.00 0.00 36.82 3.36
1098 1252 2.895424 CGGCACCCTGGACTTCCTT 61.895 63.158 0.00 0.00 36.82 3.36
1101 1255 0.393132 GCACCCTGGACTTCCTTAGC 60.393 60.000 0.00 0.00 36.82 3.09
1104 1258 1.272872 ACCCTGGACTTCCTTAGCGTA 60.273 52.381 0.00 0.00 36.82 4.42
1106 1260 2.235402 CCCTGGACTTCCTTAGCGTAAA 59.765 50.000 0.00 0.00 36.82 2.01
1135 1289 0.459063 GCCTGGCTAATGTTTGCTGC 60.459 55.000 12.43 0.00 0.00 5.25
1448 1628 4.246206 TCGCGCACGGTAGATCGG 62.246 66.667 8.75 0.00 40.63 4.18
1456 1636 1.026182 ACGGTAGATCGGTGCGTGTA 61.026 55.000 0.00 0.00 0.00 2.90
1466 1646 1.153958 GTGCGTGTAGGGTACGGTC 60.154 63.158 0.00 0.00 41.56 4.79
1467 1647 2.100991 GCGTGTAGGGTACGGTCG 59.899 66.667 0.00 0.00 41.56 4.79
1468 1648 2.793946 CGTGTAGGGTACGGTCGG 59.206 66.667 0.00 0.00 37.86 4.79
1469 1649 2.040544 CGTGTAGGGTACGGTCGGT 61.041 63.158 0.00 0.00 37.86 4.69
1472 1652 2.044053 TAGGGTACGGTCGGTGGG 60.044 66.667 0.00 0.00 0.00 4.61
1483 1663 1.002624 TCGGTGGGATCCAAAGTGC 60.003 57.895 15.23 0.00 34.18 4.40
1526 1706 0.782384 CCGCGCATAAAGATACGGAC 59.218 55.000 8.75 0.00 43.19 4.79
1528 1708 0.782384 GCGCATAAAGATACGGACGG 59.218 55.000 0.30 0.00 0.00 4.79
1529 1709 1.601162 GCGCATAAAGATACGGACGGA 60.601 52.381 0.30 0.00 0.00 4.69
1530 1710 2.316792 CGCATAAAGATACGGACGGAG 58.683 52.381 0.00 0.00 0.00 4.63
1531 1711 2.673833 GCATAAAGATACGGACGGAGG 58.326 52.381 0.00 0.00 0.00 4.30
1532 1712 2.295349 GCATAAAGATACGGACGGAGGA 59.705 50.000 0.00 0.00 0.00 3.71
1533 1713 3.612004 GCATAAAGATACGGACGGAGGAG 60.612 52.174 0.00 0.00 0.00 3.69
1534 1714 2.140839 AAAGATACGGACGGAGGAGT 57.859 50.000 0.00 0.00 0.00 3.85
1535 1715 3.287867 AAAGATACGGACGGAGGAGTA 57.712 47.619 0.00 0.00 0.00 2.59
1536 1716 2.547299 AGATACGGACGGAGGAGTAG 57.453 55.000 0.00 0.00 0.00 2.57
1537 1717 2.045524 AGATACGGACGGAGGAGTAGA 58.954 52.381 0.00 0.00 0.00 2.59
1538 1718 2.142319 GATACGGACGGAGGAGTAGAC 58.858 57.143 0.00 0.00 0.00 2.59
1539 1719 0.179100 TACGGACGGAGGAGTAGACG 60.179 60.000 0.00 0.00 0.00 4.18
1540 1720 1.153489 CGGACGGAGGAGTAGACGA 60.153 63.158 0.00 0.00 0.00 4.20
1541 1721 1.152989 CGGACGGAGGAGTAGACGAG 61.153 65.000 0.00 0.00 0.00 4.18
1542 1722 0.177604 GGACGGAGGAGTAGACGAGA 59.822 60.000 0.00 0.00 0.00 4.04
1543 1723 1.289276 GACGGAGGAGTAGACGAGAC 58.711 60.000 0.00 0.00 0.00 3.36
1544 1724 0.459934 ACGGAGGAGTAGACGAGACG 60.460 60.000 0.00 0.00 0.00 4.18
1545 1725 0.179116 CGGAGGAGTAGACGAGACGA 60.179 60.000 0.00 0.00 0.00 4.20
1546 1726 1.574134 GGAGGAGTAGACGAGACGAG 58.426 60.000 0.00 0.00 0.00 4.18
1547 1727 1.134729 GGAGGAGTAGACGAGACGAGT 60.135 57.143 0.00 0.00 0.00 4.18
1548 1728 2.100584 GGAGGAGTAGACGAGACGAGTA 59.899 54.545 0.00 0.00 0.00 2.59
1549 1729 3.374745 GAGGAGTAGACGAGACGAGTAG 58.625 54.545 0.00 0.00 0.00 2.57
1550 1730 1.860326 GGAGTAGACGAGACGAGTAGC 59.140 57.143 0.00 0.00 0.00 3.58
1552 1732 0.043138 GTAGACGAGACGAGTAGCGC 60.043 60.000 0.00 0.00 46.04 5.92
1553 1733 1.150567 TAGACGAGACGAGTAGCGCC 61.151 60.000 2.29 0.00 46.04 6.53
1554 1734 3.770353 GACGAGACGAGTAGCGCCG 62.770 68.421 2.29 2.21 46.04 6.46
1556 1736 3.878519 GAGACGAGTAGCGCCGCT 61.879 66.667 18.67 18.67 46.04 5.52
1557 1737 3.398353 GAGACGAGTAGCGCCGCTT 62.398 63.158 20.18 0.00 46.04 4.68
1558 1738 2.506438 GACGAGTAGCGCCGCTTT 60.506 61.111 20.18 6.14 46.04 3.51
1559 1739 2.789203 GACGAGTAGCGCCGCTTTG 61.789 63.158 20.18 6.71 46.04 2.77
1560 1740 2.809601 CGAGTAGCGCCGCTTTGT 60.810 61.111 20.18 1.18 40.44 2.83
1561 1741 2.380410 CGAGTAGCGCCGCTTTGTT 61.380 57.895 20.18 0.00 40.44 2.83
1579 1759 3.247442 TGTTGCGTACGTAGAAATCCAG 58.753 45.455 17.90 0.00 0.00 3.86
1590 1840 9.148104 GTACGTAGAAATCCAGAAATTACTTGT 57.852 33.333 0.00 0.00 0.00 3.16
1591 1841 8.029642 ACGTAGAAATCCAGAAATTACTTGTG 57.970 34.615 0.00 0.00 0.00 3.33
1592 1842 7.660208 ACGTAGAAATCCAGAAATTACTTGTGT 59.340 33.333 0.00 0.00 0.00 3.72
1593 1843 8.169268 CGTAGAAATCCAGAAATTACTTGTGTC 58.831 37.037 0.00 0.00 0.00 3.67
1594 1844 7.133891 AGAAATCCAGAAATTACTTGTGTCG 57.866 36.000 0.00 0.00 0.00 4.35
1595 1845 6.710744 AGAAATCCAGAAATTACTTGTGTCGT 59.289 34.615 0.00 0.00 0.00 4.34
1596 1846 5.862924 ATCCAGAAATTACTTGTGTCGTG 57.137 39.130 0.00 0.00 0.00 4.35
1597 1847 4.062293 TCCAGAAATTACTTGTGTCGTGG 58.938 43.478 0.00 0.00 0.00 4.94
1598 1848 4.062293 CCAGAAATTACTTGTGTCGTGGA 58.938 43.478 0.00 0.00 0.00 4.02
1599 1849 4.695455 CCAGAAATTACTTGTGTCGTGGAT 59.305 41.667 0.00 0.00 0.00 3.41
1600 1850 5.872617 CCAGAAATTACTTGTGTCGTGGATA 59.127 40.000 0.00 0.00 0.00 2.59
1601 1851 6.036083 CCAGAAATTACTTGTGTCGTGGATAG 59.964 42.308 0.00 0.00 0.00 2.08
1602 1852 6.811665 CAGAAATTACTTGTGTCGTGGATAGA 59.188 38.462 0.00 0.00 0.00 1.98
1738 2003 4.514577 CGCAGGGTAGGTGAGGCG 62.515 72.222 0.00 0.00 38.45 5.52
1745 2010 3.161450 TAGGTGAGGCGCCATCCC 61.161 66.667 31.54 23.59 36.32 3.85
1752 2017 3.934962 GGCGCCATCCCCTCTCTC 61.935 72.222 24.80 0.00 0.00 3.20
1753 2018 2.841988 GCGCCATCCCCTCTCTCT 60.842 66.667 0.00 0.00 0.00 3.10
1754 2019 2.866726 GCGCCATCCCCTCTCTCTC 61.867 68.421 0.00 0.00 0.00 3.20
1755 2020 1.152567 CGCCATCCCCTCTCTCTCT 60.153 63.158 0.00 0.00 0.00 3.10
1756 2021 1.178534 CGCCATCCCCTCTCTCTCTC 61.179 65.000 0.00 0.00 0.00 3.20
1757 2022 0.188342 GCCATCCCCTCTCTCTCTCT 59.812 60.000 0.00 0.00 0.00 3.10
1758 2023 1.823250 GCCATCCCCTCTCTCTCTCTC 60.823 61.905 0.00 0.00 0.00 3.20
1759 2024 1.782752 CCATCCCCTCTCTCTCTCTCT 59.217 57.143 0.00 0.00 0.00 3.10
1760 2025 2.224867 CCATCCCCTCTCTCTCTCTCTC 60.225 59.091 0.00 0.00 0.00 3.20
1761 2026 2.587060 TCCCCTCTCTCTCTCTCTCT 57.413 55.000 0.00 0.00 0.00 3.10
1762 2027 2.408565 TCCCCTCTCTCTCTCTCTCTC 58.591 57.143 0.00 0.00 0.00 3.20
1763 2028 2.022035 TCCCCTCTCTCTCTCTCTCTCT 60.022 54.545 0.00 0.00 0.00 3.10
1764 2029 2.370189 CCCCTCTCTCTCTCTCTCTCTC 59.630 59.091 0.00 0.00 0.00 3.20
1765 2030 3.312890 CCCTCTCTCTCTCTCTCTCTCT 58.687 54.545 0.00 0.00 0.00 3.10
1766 2031 3.323403 CCCTCTCTCTCTCTCTCTCTCTC 59.677 56.522 0.00 0.00 0.00 3.20
1767 2032 4.222336 CCTCTCTCTCTCTCTCTCTCTCT 58.778 52.174 0.00 0.00 0.00 3.10
1768 2033 4.280677 CCTCTCTCTCTCTCTCTCTCTCTC 59.719 54.167 0.00 0.00 0.00 3.20
1769 2034 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
1770 2035 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1771 2036 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1772 2037 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1773 2038 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1774 2039 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1775 2040 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1776 2041 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1777 2042 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1778 2043 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1779 2044 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1780 2045 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1781 2046 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1782 2047 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1783 2048 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1784 2049 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1785 2050 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1786 2051 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1787 2052 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1788 2053 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1789 2054 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1790 2055 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1791 2056 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1792 2057 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1793 2058 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1794 2059 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1795 2060 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1796 2061 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1797 2062 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1798 2063 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1799 2064 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1812 2077 3.857052 TCTCTCTCTCTCTGTTCTCGTC 58.143 50.000 0.00 0.00 0.00 4.20
1813 2078 2.936498 CTCTCTCTCTCTGTTCTCGTCC 59.064 54.545 0.00 0.00 0.00 4.79
1841 2106 5.127693 ACACAAGTTACTCAGCAGTAGAG 57.872 43.478 0.00 0.00 36.43 2.43
1870 2135 6.385649 AGATTCAAAACTTCAAAGCCGTTA 57.614 33.333 0.00 0.00 0.00 3.18
1874 2139 5.695818 TCAAAACTTCAAAGCCGTTATAGC 58.304 37.500 0.00 0.00 0.00 2.97
1882 2147 4.081862 TCAAAGCCGTTATAGCACTGTACT 60.082 41.667 0.00 0.00 0.00 2.73
1883 2148 3.438297 AGCCGTTATAGCACTGTACTG 57.562 47.619 0.00 0.00 0.00 2.74
1884 2149 1.859080 GCCGTTATAGCACTGTACTGC 59.141 52.381 0.00 0.00 37.44 4.40
1935 2200 3.722147 CTGGGTGATTATCGTGAAGAGG 58.278 50.000 0.00 0.00 0.00 3.69
1936 2201 3.104512 TGGGTGATTATCGTGAAGAGGT 58.895 45.455 0.00 0.00 0.00 3.85
1937 2202 3.517901 TGGGTGATTATCGTGAAGAGGTT 59.482 43.478 0.00 0.00 0.00 3.50
1938 2203 4.712829 TGGGTGATTATCGTGAAGAGGTTA 59.287 41.667 0.00 0.00 0.00 2.85
1939 2204 5.163447 TGGGTGATTATCGTGAAGAGGTTAG 60.163 44.000 0.00 0.00 0.00 2.34
1954 2219 6.875972 AGAGGTTAGTTATGATCCTTGTGT 57.124 37.500 0.00 0.00 0.00 3.72
1964 2229 8.928448 AGTTATGATCCTTGTGTGTGTCTATAT 58.072 33.333 0.00 0.00 0.00 0.86
1993 2258 1.410517 GTGATGCAGGAGCTAGCACTA 59.589 52.381 18.83 0.94 44.49 2.74
1995 2260 0.755686 ATGCAGGAGCTAGCACTACC 59.244 55.000 18.83 13.96 44.49 3.18
2066 2346 7.514903 GCAAATTAACAAAAATTGCTGCCAAAC 60.515 33.333 0.00 0.00 31.12 2.93
2214 2505 3.913548 CATCAACGTTGGTGGATTCAA 57.086 42.857 29.85 8.23 34.47 2.69
2215 2506 4.235939 CATCAACGTTGGTGGATTCAAA 57.764 40.909 29.85 7.50 34.47 2.69
2217 2508 4.927978 TCAACGTTGGTGGATTCAAAAT 57.072 36.364 27.02 0.00 0.00 1.82
2218 2509 4.865776 TCAACGTTGGTGGATTCAAAATC 58.134 39.130 27.02 0.00 0.00 2.17
2219 2510 3.934457 ACGTTGGTGGATTCAAAATCC 57.066 42.857 11.06 11.06 38.66 3.01
2220 2511 2.560981 ACGTTGGTGGATTCAAAATCCC 59.439 45.455 14.52 7.25 37.40 3.85
2221 2512 2.560542 CGTTGGTGGATTCAAAATCCCA 59.439 45.455 14.52 5.24 37.40 4.37
2223 2514 4.322650 CGTTGGTGGATTCAAAATCCCAAT 60.323 41.667 14.52 0.00 37.40 3.16
2224 2515 5.105554 CGTTGGTGGATTCAAAATCCCAATA 60.106 40.000 14.52 0.00 37.40 1.90
2226 2517 5.588845 TGGTGGATTCAAAATCCCAATAGT 58.411 37.500 14.52 0.00 37.40 2.12
2246 2598 1.171308 GTCTTGTGCATGTCATGGCT 58.829 50.000 14.64 0.00 0.00 4.75
2248 2600 1.003928 TCTTGTGCATGTCATGGCTCT 59.996 47.619 14.64 0.00 0.00 4.09
2298 2658 1.895131 TCTTTTGGGGAAATGCTGAGC 59.105 47.619 0.00 0.00 0.00 4.26
2355 2715 4.029809 GGTTGGGTGGGACGGGAG 62.030 72.222 0.00 0.00 0.00 4.30
2359 2719 3.079478 GGGTGGGACGGGAGGTAC 61.079 72.222 0.00 0.00 0.00 3.34
2410 2809 2.289375 GCACTCGCTACGCTGATCG 61.289 63.158 0.00 0.00 38.68 3.69
2416 2815 1.727335 TCGCTACGCTGATCGATCTAG 59.273 52.381 25.02 19.90 41.67 2.43
2418 2817 2.666994 CGCTACGCTGATCGATCTAGTA 59.333 50.000 25.02 21.54 41.67 1.82
2419 2818 3.241836 CGCTACGCTGATCGATCTAGTAG 60.242 52.174 29.54 29.54 41.67 2.57
2420 2819 3.680937 GCTACGCTGATCGATCTAGTAGT 59.319 47.826 31.33 25.60 41.67 2.73
2421 2820 4.152759 GCTACGCTGATCGATCTAGTAGTT 59.847 45.833 31.33 16.94 41.67 2.24
2423 2822 4.849883 ACGCTGATCGATCTAGTAGTTTG 58.150 43.478 25.02 11.01 41.67 2.93
2456 2864 8.697507 ATTAGACTTTTGAGTGGACATTCTTT 57.302 30.769 0.00 0.00 0.00 2.52
2457 2865 6.625873 AGACTTTTGAGTGGACATTCTTTC 57.374 37.500 0.00 0.00 0.00 2.62
2461 2869 2.766313 TGAGTGGACATTCTTTCACGG 58.234 47.619 0.00 0.00 35.50 4.94
2467 2875 5.768164 AGTGGACATTCTTTCACGGTAAATT 59.232 36.000 0.00 0.00 35.50 1.82
2469 2877 5.048364 TGGACATTCTTTCACGGTAAATTGG 60.048 40.000 0.00 0.00 0.00 3.16
2478 2886 4.551388 TCACGGTAAATTGGCAAACATTC 58.449 39.130 3.01 0.00 0.00 2.67
2488 2896 2.903135 TGGCAAACATTCCCCCTAAAAG 59.097 45.455 0.00 0.00 0.00 2.27
2490 2898 3.056107 GGCAAACATTCCCCCTAAAAGAC 60.056 47.826 0.00 0.00 0.00 3.01
2491 2899 3.832490 GCAAACATTCCCCCTAAAAGACT 59.168 43.478 0.00 0.00 0.00 3.24
2493 2901 5.783111 CAAACATTCCCCCTAAAAGACTTG 58.217 41.667 0.00 0.00 0.00 3.16
2508 2916 7.473027 AAAAGACTTGCATGAAAATCACTTG 57.527 32.000 6.60 0.00 0.00 3.16
2510 2918 4.021719 AGACTTGCATGAAAATCACTTGGG 60.022 41.667 6.60 0.00 0.00 4.12
2514 2922 3.244146 TGCATGAAAATCACTTGGGGTTG 60.244 43.478 0.00 0.00 0.00 3.77
2527 2935 1.003118 TGGGGTTGGTTCAGAGATTCG 59.997 52.381 0.00 0.00 0.00 3.34
2532 2940 0.173481 TGGTTCAGAGATTCGGAGCG 59.827 55.000 0.00 0.00 0.00 5.03
2535 2943 1.135373 GTTCAGAGATTCGGAGCGACA 60.135 52.381 0.00 0.00 34.89 4.35
2536 2944 1.393603 TCAGAGATTCGGAGCGACAT 58.606 50.000 0.00 0.00 34.89 3.06
2537 2945 1.066152 TCAGAGATTCGGAGCGACATG 59.934 52.381 0.00 0.00 34.89 3.21
2538 2946 1.107114 AGAGATTCGGAGCGACATGT 58.893 50.000 0.00 0.00 34.89 3.21
2539 2947 1.478510 AGAGATTCGGAGCGACATGTT 59.521 47.619 0.00 0.00 34.89 2.71
2540 2948 2.688446 AGAGATTCGGAGCGACATGTTA 59.312 45.455 0.00 0.00 34.89 2.41
2541 2949 2.789893 GAGATTCGGAGCGACATGTTAC 59.210 50.000 0.00 0.00 34.89 2.50
2542 2950 1.517276 GATTCGGAGCGACATGTTACG 59.483 52.381 0.00 0.33 34.89 3.18
2543 2951 0.241749 TTCGGAGCGACATGTTACGT 59.758 50.000 0.00 0.00 34.89 3.57
2544 2952 0.455464 TCGGAGCGACATGTTACGTG 60.455 55.000 0.00 2.65 0.00 4.49
2545 2953 0.731514 CGGAGCGACATGTTACGTGT 60.732 55.000 10.24 10.24 0.00 4.49
2548 2956 1.790623 GAGCGACATGTTACGTGTTGT 59.209 47.619 21.73 11.54 34.21 3.32
2550 2958 2.033236 AGCGACATGTTACGTGTTGTTG 60.033 45.455 21.73 10.08 34.21 3.33
2555 2963 3.690139 ACATGTTACGTGTTGTTGGTTGA 59.310 39.130 4.14 0.00 0.00 3.18
2562 2970 4.561105 ACGTGTTGTTGGTTGATTTGTTT 58.439 34.783 0.00 0.00 0.00 2.83
2563 2971 4.387256 ACGTGTTGTTGGTTGATTTGTTTG 59.613 37.500 0.00 0.00 0.00 2.93
2567 2975 4.543590 TGTTGGTTGATTTGTTTGTGGT 57.456 36.364 0.00 0.00 0.00 4.16
2568 2976 4.899502 TGTTGGTTGATTTGTTTGTGGTT 58.100 34.783 0.00 0.00 0.00 3.67
2574 2982 5.691754 GGTTGATTTGTTTGTGGTTCATCTC 59.308 40.000 0.00 0.00 0.00 2.75
2586 2994 6.950842 TGTGGTTCATCTCAGTTCATATTCT 58.049 36.000 0.00 0.00 0.00 2.40
2587 2995 6.820152 TGTGGTTCATCTCAGTTCATATTCTG 59.180 38.462 0.00 0.00 0.00 3.02
2618 3028 8.827177 ATCAACGTAAAAGTGATGTTCTAAGA 57.173 30.769 0.00 0.00 0.00 2.10
2620 3030 8.761497 TCAACGTAAAAGTGATGTTCTAAGAAG 58.239 33.333 0.00 0.00 0.00 2.85
2621 3031 8.761497 CAACGTAAAAGTGATGTTCTAAGAAGA 58.239 33.333 0.00 0.00 0.00 2.87
2622 3032 8.882415 ACGTAAAAGTGATGTTCTAAGAAGAA 57.118 30.769 0.00 0.00 39.47 2.52
2623 3033 8.979574 ACGTAAAAGTGATGTTCTAAGAAGAAG 58.020 33.333 0.00 0.00 42.40 2.85
2743 3153 2.813042 GTGTCGCTGCTCTGCCTC 60.813 66.667 0.00 0.00 0.00 4.70
3013 3423 2.432510 GACCGGAGACAAGATCCAGATT 59.567 50.000 9.46 0.00 36.57 2.40
3022 3432 4.775236 ACAAGATCCAGATTCTGTAAGCC 58.225 43.478 12.54 0.00 0.00 4.35
3023 3433 3.742433 AGATCCAGATTCTGTAAGCCG 57.258 47.619 12.54 0.00 0.00 5.52
3026 3436 1.154205 CCAGATTCTGTAAGCCGCCG 61.154 60.000 12.54 0.00 0.00 6.46
3028 3438 0.103208 AGATTCTGTAAGCCGCCGAG 59.897 55.000 0.00 0.00 0.00 4.63
3039 3449 2.464459 CCGCCGAGCAAACATCTCC 61.464 63.158 0.00 0.00 0.00 3.71
3040 3450 1.741401 CGCCGAGCAAACATCTCCA 60.741 57.895 0.00 0.00 0.00 3.86
3041 3451 1.796796 GCCGAGCAAACATCTCCAC 59.203 57.895 0.00 0.00 0.00 4.02
3042 3452 0.955428 GCCGAGCAAACATCTCCACA 60.955 55.000 0.00 0.00 0.00 4.17
3043 3453 1.742761 CCGAGCAAACATCTCCACAT 58.257 50.000 0.00 0.00 0.00 3.21
3044 3454 1.667724 CCGAGCAAACATCTCCACATC 59.332 52.381 0.00 0.00 0.00 3.06
3045 3455 2.349590 CGAGCAAACATCTCCACATCA 58.650 47.619 0.00 0.00 0.00 3.07
3047 3457 3.425359 CGAGCAAACATCTCCACATCAAC 60.425 47.826 0.00 0.00 0.00 3.18
3050 3468 3.194116 GCAAACATCTCCACATCAACCAT 59.806 43.478 0.00 0.00 0.00 3.55
3055 3473 4.080186 ACATCTCCACATCAACCATGATCA 60.080 41.667 0.00 0.00 44.53 2.92
3107 3530 5.129980 TCTGATCTTCTTCTGTATGCATGGT 59.870 40.000 10.16 0.00 0.00 3.55
3112 3535 3.609853 TCTTCTGTATGCATGGTTGGTC 58.390 45.455 10.16 0.00 0.00 4.02
3357 3784 4.509737 GACGCGTCCTACTGGGGC 62.510 72.222 28.61 0.00 36.08 5.80
3363 3790 3.390521 TCCTACTGGGGCAGCACG 61.391 66.667 0.00 0.00 34.37 5.34
3435 3862 4.715523 CCGGTGGGCGTGGTGAAT 62.716 66.667 0.00 0.00 0.00 2.57
3604 4031 1.098869 CGAGCTGCTCTACTGGAAGA 58.901 55.000 25.59 0.00 37.43 2.87
3620 4047 0.543749 AAGATCTTCTTCCCCGCCAG 59.456 55.000 0.88 0.00 28.99 4.85
3653 4086 4.538283 ACGCAGCCTCGTCGATCG 62.538 66.667 9.36 9.36 38.44 3.69
3656 4089 2.351322 CAGCCTCGTCGATCGTCG 60.351 66.667 25.20 25.20 42.10 5.12
3657 4090 2.818714 AGCCTCGTCGATCGTCGT 60.819 61.111 28.45 11.40 41.35 4.34
3658 4091 2.350985 GCCTCGTCGATCGTCGTC 60.351 66.667 28.45 17.44 41.35 4.20
3670 4103 1.768510 TCGTCGTCGTTTAACATGCA 58.231 45.000 1.33 0.00 38.33 3.96
3804 4241 1.553704 GGATCTTGTCCCCTTACACGT 59.446 52.381 0.00 0.00 41.50 4.49
3813 4250 0.390603 CCCTTACACGTTGGATGCGA 60.391 55.000 0.00 0.00 0.00 5.10
3827 4264 0.754217 ATGCGATTCATGGGCTTGCT 60.754 50.000 0.00 0.00 33.26 3.91
3906 4347 5.762179 AGGACATCTACAAATGGACTTCA 57.238 39.130 0.00 0.00 0.00 3.02
3907 4348 5.491982 AGGACATCTACAAATGGACTTCAC 58.508 41.667 0.00 0.00 0.00 3.18
3916 4357 4.895297 ACAAATGGACTTCACACAAATCCT 59.105 37.500 0.00 0.00 0.00 3.24
3970 4424 0.909610 GGTCACCCCTCATGTCTCCA 60.910 60.000 0.00 0.00 0.00 3.86
3975 4429 1.206878 CCCCTCATGTCTCCATGTCA 58.793 55.000 2.91 0.00 46.99 3.58
3976 4430 1.561076 CCCCTCATGTCTCCATGTCAA 59.439 52.381 2.91 0.00 46.99 3.18
3980 4434 2.676839 CTCATGTCTCCATGTCAACAGC 59.323 50.000 2.91 0.00 46.99 4.40
3983 4437 1.352017 TGTCTCCATGTCAACAGCCAT 59.648 47.619 0.00 0.00 0.00 4.40
4026 5212 1.882352 GCCCCCAAATCCATACTAGCG 60.882 57.143 0.00 0.00 0.00 4.26
4078 5264 5.801350 ACATATCAACATTCCGACAACAG 57.199 39.130 0.00 0.00 0.00 3.16
4147 5333 1.335872 GGCCCAAAAGTTCATCACACG 60.336 52.381 0.00 0.00 0.00 4.49
4189 5392 4.091939 GCTAAACCGAGGGGGCGT 62.092 66.667 0.00 0.00 40.62 5.68
4199 5402 2.270874 GAGGGGGCGTTGGACATCAT 62.271 60.000 0.00 0.00 0.00 2.45
4252 5455 3.988976 ACGAGAGTGGTGGTAGTAGTA 57.011 47.619 0.00 0.00 46.97 1.82
4264 5467 1.529012 GTAGTAGTACTCCGCGTAGGC 59.471 57.143 5.96 0.00 40.77 3.93
4396 5600 1.800315 CCACTTACGCGTCGACAGG 60.800 63.158 18.63 9.31 0.00 4.00
4406 5610 2.680352 TCGACAGGCACCCTCTCC 60.680 66.667 0.00 0.00 0.00 3.71
4438 5642 1.735920 CAGACTGCTCGGTGCTGAC 60.736 63.158 14.48 9.06 42.27 3.51
4463 5667 3.843632 TGCATTCGTGTTCTTGCAC 57.156 47.368 0.00 0.00 39.98 4.57
4504 5708 1.374125 CTGTTGTGGACATCGGCGA 60.374 57.895 13.87 13.87 37.69 5.54
4506 5710 0.321210 TGTTGTGGACATCGGCGAAT 60.321 50.000 15.93 4.92 32.00 3.34
4516 5720 1.922135 ATCGGCGAATGCAACACCAC 61.922 55.000 15.93 0.00 45.35 4.16
4517 5721 2.126888 GGCGAATGCAACACCACG 60.127 61.111 0.00 0.00 45.35 4.94
4518 5722 2.637025 GCGAATGCAACACCACGT 59.363 55.556 0.00 0.00 42.15 4.49
4526 5730 1.009675 CAACACCACGTGCAAGAGC 60.010 57.895 10.91 0.00 36.98 4.09
4527 5731 2.186826 AACACCACGTGCAAGAGCC 61.187 57.895 10.91 0.00 41.13 4.70
4533 5737 1.079127 ACGTGCAAGAGCCGCTTAT 60.079 52.632 6.65 0.00 41.13 1.73
4535 5739 1.766143 CGTGCAAGAGCCGCTTATCC 61.766 60.000 0.00 0.00 41.13 2.59
4544 5748 4.132426 CGCTTATCCGGATCGACG 57.868 61.111 23.08 18.51 0.00 5.12
4574 5778 2.887568 GCAGACACGCGGGATCTG 60.888 66.667 26.38 26.38 42.33 2.90
4575 5779 2.573869 CAGACACGCGGGATCTGT 59.426 61.111 19.19 7.33 36.02 3.41
4576 5780 1.807165 CAGACACGCGGGATCTGTG 60.807 63.158 19.19 1.15 36.02 3.66
4577 5781 2.509336 GACACGCGGGATCTGTGG 60.509 66.667 19.19 0.00 37.92 4.17
4578 5782 4.082523 ACACGCGGGATCTGTGGG 62.083 66.667 19.19 6.39 37.92 4.61
4579 5783 3.770040 CACGCGGGATCTGTGGGA 61.770 66.667 12.47 0.00 0.00 4.37
4580 5784 3.461773 ACGCGGGATCTGTGGGAG 61.462 66.667 12.47 0.00 0.00 4.30
4581 5785 4.227134 CGCGGGATCTGTGGGAGG 62.227 72.222 0.00 0.00 0.00 4.30
4582 5786 2.764128 GCGGGATCTGTGGGAGGA 60.764 66.667 0.00 0.00 0.00 3.71
4583 5787 2.367202 GCGGGATCTGTGGGAGGAA 61.367 63.158 0.00 0.00 0.00 3.36
4584 5788 1.522569 CGGGATCTGTGGGAGGAAC 59.477 63.158 0.00 0.00 0.00 3.62
4586 5790 1.290134 GGGATCTGTGGGAGGAACTT 58.710 55.000 0.00 0.00 41.55 2.66
4587 5791 1.065126 GGGATCTGTGGGAGGAACTTG 60.065 57.143 0.00 0.00 41.55 3.16
4588 5792 1.680249 GGATCTGTGGGAGGAACTTGC 60.680 57.143 0.00 0.00 41.55 4.01
4589 5793 0.329596 ATCTGTGGGAGGAACTTGCC 59.670 55.000 0.00 0.00 41.55 4.52
4590 5794 0.768221 TCTGTGGGAGGAACTTGCCT 60.768 55.000 0.00 0.00 41.55 4.75
4591 5795 0.111253 CTGTGGGAGGAACTTGCCTT 59.889 55.000 0.00 0.00 41.55 4.35
4592 5796 0.110486 TGTGGGAGGAACTTGCCTTC 59.890 55.000 0.00 0.00 41.55 3.46
4593 5797 0.110486 GTGGGAGGAACTTGCCTTCA 59.890 55.000 0.00 0.00 41.55 3.02
4594 5798 0.110486 TGGGAGGAACTTGCCTTCAC 59.890 55.000 0.00 0.00 41.55 3.18
4595 5799 0.609406 GGGAGGAACTTGCCTTCACC 60.609 60.000 0.00 0.00 41.55 4.02
4596 5800 0.955919 GGAGGAACTTGCCTTCACCG 60.956 60.000 0.00 0.00 41.55 4.94
4597 5801 1.578206 GAGGAACTTGCCTTCACCGC 61.578 60.000 0.00 0.00 41.55 5.68
4598 5802 2.626780 GGAACTTGCCTTCACCGCC 61.627 63.158 0.00 0.00 0.00 6.13
4599 5803 1.896660 GAACTTGCCTTCACCGCCA 60.897 57.895 0.00 0.00 0.00 5.69
4600 5804 2.130073 GAACTTGCCTTCACCGCCAC 62.130 60.000 0.00 0.00 0.00 5.01
4601 5805 3.365265 CTTGCCTTCACCGCCACC 61.365 66.667 0.00 0.00 0.00 4.61
4602 5806 4.196778 TTGCCTTCACCGCCACCA 62.197 61.111 0.00 0.00 0.00 4.17
4603 5807 4.947147 TGCCTTCACCGCCACCAC 62.947 66.667 0.00 0.00 0.00 4.16
4606 5810 3.953775 CTTCACCGCCACCACCCT 61.954 66.667 0.00 0.00 0.00 4.34
4607 5811 3.901797 CTTCACCGCCACCACCCTC 62.902 68.421 0.00 0.00 0.00 4.30
4608 5812 4.954118 TCACCGCCACCACCCTCT 62.954 66.667 0.00 0.00 0.00 3.69
4609 5813 4.394712 CACCGCCACCACCCTCTC 62.395 72.222 0.00 0.00 0.00 3.20
4610 5814 4.954118 ACCGCCACCACCCTCTCA 62.954 66.667 0.00 0.00 0.00 3.27
4611 5815 3.402681 CCGCCACCACCCTCTCAT 61.403 66.667 0.00 0.00 0.00 2.90
4612 5816 2.671070 CGCCACCACCCTCTCATT 59.329 61.111 0.00 0.00 0.00 2.57
4613 5817 1.450312 CGCCACCACCCTCTCATTC 60.450 63.158 0.00 0.00 0.00 2.67
4614 5818 1.685224 GCCACCACCCTCTCATTCA 59.315 57.895 0.00 0.00 0.00 2.57
4615 5819 0.678048 GCCACCACCCTCTCATTCAC 60.678 60.000 0.00 0.00 0.00 3.18
4616 5820 0.987294 CCACCACCCTCTCATTCACT 59.013 55.000 0.00 0.00 0.00 3.41
4617 5821 1.065854 CCACCACCCTCTCATTCACTC 60.066 57.143 0.00 0.00 0.00 3.51
4618 5822 0.898320 ACCACCCTCTCATTCACTCG 59.102 55.000 0.00 0.00 0.00 4.18
4619 5823 0.460987 CCACCCTCTCATTCACTCGC 60.461 60.000 0.00 0.00 0.00 5.03
4620 5824 0.534412 CACCCTCTCATTCACTCGCT 59.466 55.000 0.00 0.00 0.00 4.93
4621 5825 1.751351 CACCCTCTCATTCACTCGCTA 59.249 52.381 0.00 0.00 0.00 4.26
4622 5826 2.363680 CACCCTCTCATTCACTCGCTAT 59.636 50.000 0.00 0.00 0.00 2.97
4623 5827 2.625790 ACCCTCTCATTCACTCGCTATC 59.374 50.000 0.00 0.00 0.00 2.08
4624 5828 2.890311 CCCTCTCATTCACTCGCTATCT 59.110 50.000 0.00 0.00 0.00 1.98
4625 5829 3.057596 CCCTCTCATTCACTCGCTATCTC 60.058 52.174 0.00 0.00 0.00 2.75
4626 5830 3.820467 CCTCTCATTCACTCGCTATCTCT 59.180 47.826 0.00 0.00 0.00 3.10
4627 5831 4.278170 CCTCTCATTCACTCGCTATCTCTT 59.722 45.833 0.00 0.00 0.00 2.85
4628 5832 5.180367 TCTCATTCACTCGCTATCTCTTG 57.820 43.478 0.00 0.00 0.00 3.02
4629 5833 3.711086 TCATTCACTCGCTATCTCTTGC 58.289 45.455 0.00 0.00 0.00 4.01
4635 5839 3.313750 GCTATCTCTTGCGGCGTG 58.686 61.111 9.37 0.00 0.00 5.34
4636 5840 2.240500 GCTATCTCTTGCGGCGTGG 61.241 63.158 9.37 0.00 0.00 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.413048 CTATACCTCCGCAATTTTTGTTAAAAA 57.587 29.630 2.39 2.39 43.76 1.94
2 3 7.542824 GCTATACCTCCGCAATTTTTGTTAAAA 59.457 33.333 0.00 0.00 37.62 1.52
3 4 7.030768 GCTATACCTCCGCAATTTTTGTTAAA 58.969 34.615 0.00 0.00 0.00 1.52
4 5 6.151312 TGCTATACCTCCGCAATTTTTGTTAA 59.849 34.615 0.00 0.00 0.00 2.01
5 6 5.648526 TGCTATACCTCCGCAATTTTTGTTA 59.351 36.000 0.00 0.00 0.00 2.41
6 7 4.461081 TGCTATACCTCCGCAATTTTTGTT 59.539 37.500 0.00 0.00 0.00 2.83
7 8 4.013728 TGCTATACCTCCGCAATTTTTGT 58.986 39.130 0.00 0.00 0.00 2.83
8 9 4.630894 TGCTATACCTCCGCAATTTTTG 57.369 40.909 0.00 0.00 0.00 2.44
39 40 0.844503 GCTCGTTTATACTCCACGCG 59.155 55.000 3.53 3.53 33.85 6.01
73 74 1.983605 CTGCGCAAAGAAGCTCATTTG 59.016 47.619 13.05 15.73 39.01 2.32
106 118 3.785486 TCGAGGAATGCTCATGTTACAG 58.215 45.455 2.09 0.00 0.00 2.74
114 126 1.153765 CACGCTCGAGGAATGCTCA 60.154 57.895 15.58 0.00 0.00 4.26
118 130 1.136774 TCGACACGCTCGAGGAATG 59.863 57.895 15.58 2.68 46.75 2.67
126 145 0.108804 TGGAAAGGATCGACACGCTC 60.109 55.000 0.00 0.00 0.00 5.03
128 147 1.359459 GGTGGAAAGGATCGACACGC 61.359 60.000 0.00 0.00 38.42 5.34
135 154 2.347731 GAGTTCGTGGTGGAAAGGATC 58.652 52.381 0.00 0.00 0.00 3.36
155 176 3.488090 GCGAAAGGGAGAACGCCG 61.488 66.667 0.00 0.00 44.27 6.46
159 180 0.875059 CCTGTTGCGAAAGGGAGAAC 59.125 55.000 1.50 0.00 0.00 3.01
173 196 1.725803 ACCGGTAAGAACTCCCTGTT 58.274 50.000 4.49 0.00 42.38 3.16
247 287 1.483806 CGAACGAACGTGCGCTTTA 59.516 52.632 17.82 0.00 40.52 1.85
270 314 0.242825 CGGAAGAAGTACGTCCTGCA 59.757 55.000 5.10 0.00 43.29 4.41
274 318 2.227388 TCAGAACGGAAGAAGTACGTCC 59.773 50.000 5.10 1.96 40.31 4.79
281 325 6.400091 CGACAAGTAATTCAGAACGGAAGAAG 60.400 42.308 0.00 0.00 0.00 2.85
283 327 4.921515 CGACAAGTAATTCAGAACGGAAGA 59.078 41.667 0.00 0.00 0.00 2.87
284 328 4.434330 GCGACAAGTAATTCAGAACGGAAG 60.434 45.833 0.00 0.00 0.00 3.46
287 331 2.734606 TGCGACAAGTAATTCAGAACGG 59.265 45.455 0.00 0.00 0.00 4.44
289 333 3.746492 ACCTGCGACAAGTAATTCAGAAC 59.254 43.478 0.00 0.00 0.00 3.01
290 334 4.002906 ACCTGCGACAAGTAATTCAGAA 57.997 40.909 0.00 0.00 0.00 3.02
291 335 3.678056 ACCTGCGACAAGTAATTCAGA 57.322 42.857 0.00 0.00 0.00 3.27
292 336 4.271049 CCATACCTGCGACAAGTAATTCAG 59.729 45.833 0.00 0.00 0.00 3.02
293 337 4.081365 TCCATACCTGCGACAAGTAATTCA 60.081 41.667 0.00 0.00 0.00 2.57
294 338 4.439057 TCCATACCTGCGACAAGTAATTC 58.561 43.478 0.00 0.00 0.00 2.17
295 339 4.481368 TCCATACCTGCGACAAGTAATT 57.519 40.909 0.00 0.00 0.00 1.40
296 340 4.141711 ACATCCATACCTGCGACAAGTAAT 60.142 41.667 0.00 0.00 0.00 1.89
297 341 3.196901 ACATCCATACCTGCGACAAGTAA 59.803 43.478 0.00 0.00 0.00 2.24
298 342 2.764010 ACATCCATACCTGCGACAAGTA 59.236 45.455 0.00 0.00 0.00 2.24
299 343 1.555075 ACATCCATACCTGCGACAAGT 59.445 47.619 0.00 0.00 0.00 3.16
300 344 2.315925 ACATCCATACCTGCGACAAG 57.684 50.000 0.00 0.00 0.00 3.16
301 345 3.641436 AGATACATCCATACCTGCGACAA 59.359 43.478 0.00 0.00 0.00 3.18
302 346 3.230976 AGATACATCCATACCTGCGACA 58.769 45.455 0.00 0.00 0.00 4.35
303 347 3.944055 AGATACATCCATACCTGCGAC 57.056 47.619 0.00 0.00 0.00 5.19
304 348 4.918588 TCTAGATACATCCATACCTGCGA 58.081 43.478 0.00 0.00 0.00 5.10
305 349 5.126222 ACATCTAGATACATCCATACCTGCG 59.874 44.000 4.54 0.00 0.00 5.18
306 350 6.537453 ACATCTAGATACATCCATACCTGC 57.463 41.667 4.54 0.00 0.00 4.85
342 386 6.467723 ACTCGTCGCAAAAATGGATATATC 57.532 37.500 3.96 3.96 0.00 1.63
343 387 7.956420 TTACTCGTCGCAAAAATGGATATAT 57.044 32.000 0.00 0.00 0.00 0.86
344 388 7.956420 ATTACTCGTCGCAAAAATGGATATA 57.044 32.000 0.00 0.00 0.00 0.86
345 389 6.861065 ATTACTCGTCGCAAAAATGGATAT 57.139 33.333 0.00 0.00 0.00 1.63
346 390 6.671614 AATTACTCGTCGCAAAAATGGATA 57.328 33.333 0.00 0.00 0.00 2.59
347 391 5.560966 AATTACTCGTCGCAAAAATGGAT 57.439 34.783 0.00 0.00 0.00 3.41
348 392 5.049336 TCAAATTACTCGTCGCAAAAATGGA 60.049 36.000 0.00 0.00 0.00 3.41
349 393 5.150683 TCAAATTACTCGTCGCAAAAATGG 58.849 37.500 0.00 0.00 0.00 3.16
350 394 6.667981 TTCAAATTACTCGTCGCAAAAATG 57.332 33.333 0.00 0.00 0.00 2.32
351 395 6.129561 CGTTTCAAATTACTCGTCGCAAAAAT 60.130 34.615 0.00 0.00 0.00 1.82
352 396 5.169915 CGTTTCAAATTACTCGTCGCAAAAA 59.830 36.000 0.00 0.00 0.00 1.94
353 397 4.667061 CGTTTCAAATTACTCGTCGCAAAA 59.333 37.500 0.00 0.00 0.00 2.44
354 398 4.205334 CGTTTCAAATTACTCGTCGCAAA 58.795 39.130 0.00 0.00 0.00 3.68
355 399 3.363182 CCGTTTCAAATTACTCGTCGCAA 60.363 43.478 0.00 0.00 0.00 4.85
356 400 2.156117 CCGTTTCAAATTACTCGTCGCA 59.844 45.455 0.00 0.00 0.00 5.10
357 401 2.409378 TCCGTTTCAAATTACTCGTCGC 59.591 45.455 0.00 0.00 0.00 5.19
358 402 3.060363 CCTCCGTTTCAAATTACTCGTCG 59.940 47.826 0.00 0.00 0.00 5.12
359 403 3.370061 CCCTCCGTTTCAAATTACTCGTC 59.630 47.826 0.00 0.00 0.00 4.20
360 404 3.007182 TCCCTCCGTTTCAAATTACTCGT 59.993 43.478 0.00 0.00 0.00 4.18
361 405 3.592059 TCCCTCCGTTTCAAATTACTCG 58.408 45.455 0.00 0.00 0.00 4.18
362 406 7.619964 TTATTCCCTCCGTTTCAAATTACTC 57.380 36.000 0.00 0.00 0.00 2.59
363 407 9.689501 TTATTATTCCCTCCGTTTCAAATTACT 57.310 29.630 0.00 0.00 0.00 2.24
366 410 9.196139 TGATTATTATTCCCTCCGTTTCAAATT 57.804 29.630 0.00 0.00 0.00 1.82
367 411 8.760980 TGATTATTATTCCCTCCGTTTCAAAT 57.239 30.769 0.00 0.00 0.00 2.32
368 412 8.582657 TTGATTATTATTCCCTCCGTTTCAAA 57.417 30.769 0.00 0.00 0.00 2.69
369 413 8.050325 TCTTGATTATTATTCCCTCCGTTTCAA 58.950 33.333 0.00 0.00 0.00 2.69
370 414 7.570132 TCTTGATTATTATTCCCTCCGTTTCA 58.430 34.615 0.00 0.00 0.00 2.69
371 415 8.343366 GTTCTTGATTATTATTCCCTCCGTTTC 58.657 37.037 0.00 0.00 0.00 2.78
372 416 7.012044 CGTTCTTGATTATTATTCCCTCCGTTT 59.988 37.037 0.00 0.00 0.00 3.60
373 417 6.482308 CGTTCTTGATTATTATTCCCTCCGTT 59.518 38.462 0.00 0.00 0.00 4.44
374 418 5.989777 CGTTCTTGATTATTATTCCCTCCGT 59.010 40.000 0.00 0.00 0.00 4.69
375 419 5.989777 ACGTTCTTGATTATTATTCCCTCCG 59.010 40.000 0.00 0.00 0.00 4.63
376 420 8.148999 ACTACGTTCTTGATTATTATTCCCTCC 58.851 37.037 0.00 0.00 0.00 4.30
377 421 9.194271 GACTACGTTCTTGATTATTATTCCCTC 57.806 37.037 0.00 0.00 0.00 4.30
378 422 7.866393 CGACTACGTTCTTGATTATTATTCCCT 59.134 37.037 0.00 0.00 34.56 4.20
379 423 7.359014 GCGACTACGTTCTTGATTATTATTCCC 60.359 40.741 0.00 0.00 41.98 3.97
380 424 7.168637 TGCGACTACGTTCTTGATTATTATTCC 59.831 37.037 0.00 0.00 41.98 3.01
381 425 8.057812 TGCGACTACGTTCTTGATTATTATTC 57.942 34.615 0.00 0.00 41.98 1.75
382 426 7.997107 TGCGACTACGTTCTTGATTATTATT 57.003 32.000 0.00 0.00 41.98 1.40
383 427 7.490079 TGTTGCGACTACGTTCTTGATTATTAT 59.510 33.333 5.50 0.00 41.98 1.28
384 428 6.807720 TGTTGCGACTACGTTCTTGATTATTA 59.192 34.615 5.50 0.00 41.98 0.98
385 429 5.636121 TGTTGCGACTACGTTCTTGATTATT 59.364 36.000 5.50 0.00 41.98 1.40
386 430 5.165676 TGTTGCGACTACGTTCTTGATTAT 58.834 37.500 5.50 0.00 41.98 1.28
391 435 2.283086 TGTTGTTGCGACTACGTTCTTG 59.717 45.455 13.02 0.00 41.98 3.02
401 445 6.747659 ATTCAGTTTTATTGTTGTTGCGAC 57.252 33.333 0.00 0.00 0.00 5.19
428 485 3.804329 AGGGTTGGTGCACGGTGT 61.804 61.111 11.45 0.00 0.00 4.16
433 505 1.961277 CTCGTCAGGGTTGGTGCAC 60.961 63.158 8.80 8.80 0.00 4.57
457 529 0.613777 ATCTGGTTGGAACTCCGTCC 59.386 55.000 3.07 3.07 39.43 4.79
464 536 4.125703 CTCTGATGCTATCTGGTTGGAAC 58.874 47.826 0.00 0.00 0.00 3.62
489 561 2.926242 CACGGTAGGTGGGTGGGT 60.926 66.667 0.00 0.00 43.16 4.51
496 568 2.264794 GGACTGCCACGGTAGGTG 59.735 66.667 6.13 0.00 46.57 4.00
497 569 3.379445 CGGACTGCCACGGTAGGT 61.379 66.667 6.13 0.00 32.04 3.08
498 570 4.143333 CCGGACTGCCACGGTAGG 62.143 72.222 0.00 0.00 44.85 3.18
586 681 1.586564 CGGCAGTACTGTAGCGAGC 60.587 63.158 23.44 7.61 0.00 5.03
634 731 1.219393 CTCACTCCCTTTCCGAGCC 59.781 63.158 0.00 0.00 0.00 4.70
636 733 2.360801 GAGATCTCACTCCCTTTCCGAG 59.639 54.545 18.11 0.00 0.00 4.63
665 771 4.385748 CGGCAGCTTTTGAATTTCCTAAAC 59.614 41.667 0.00 0.00 0.00 2.01
728 843 2.202690 TAGGCGCGACGACATTGG 60.203 61.111 12.10 0.00 37.34 3.16
729 844 0.248336 TAGTAGGCGCGACGACATTG 60.248 55.000 27.19 0.00 37.34 2.82
755 873 0.608640 CTCCTACCACACCAGACCAC 59.391 60.000 0.00 0.00 0.00 4.16
756 874 0.190069 ACTCCTACCACACCAGACCA 59.810 55.000 0.00 0.00 0.00 4.02
757 875 0.608640 CACTCCTACCACACCAGACC 59.391 60.000 0.00 0.00 0.00 3.85
758 876 0.608640 CCACTCCTACCACACCAGAC 59.391 60.000 0.00 0.00 0.00 3.51
759 877 0.190069 ACCACTCCTACCACACCAGA 59.810 55.000 0.00 0.00 0.00 3.86
781 899 3.475774 CAACCGCCGCACGTACTC 61.476 66.667 0.00 0.00 41.42 2.59
892 1019 0.316841 GGGATCTCGGCAAGCTCTAG 59.683 60.000 0.00 0.00 0.00 2.43
893 1020 0.397114 TGGGATCTCGGCAAGCTCTA 60.397 55.000 0.00 0.00 0.00 2.43
894 1021 1.687146 TGGGATCTCGGCAAGCTCT 60.687 57.895 0.00 0.00 0.00 4.09
895 1022 1.522580 GTGGGATCTCGGCAAGCTC 60.523 63.158 0.00 0.00 0.00 4.09
897 1024 2.514824 GGTGGGATCTCGGCAAGC 60.515 66.667 0.00 0.00 0.00 4.01
898 1025 2.190578 GGGTGGGATCTCGGCAAG 59.809 66.667 0.00 0.00 0.00 4.01
899 1026 2.609299 TGGGTGGGATCTCGGCAA 60.609 61.111 0.00 0.00 0.00 4.52
901 1028 4.176752 GGTGGGTGGGATCTCGGC 62.177 72.222 0.00 0.00 0.00 5.54
902 1029 3.480133 GGGTGGGTGGGATCTCGG 61.480 72.222 0.00 0.00 0.00 4.63
903 1030 1.635817 ATTGGGTGGGTGGGATCTCG 61.636 60.000 0.00 0.00 0.00 4.04
905 1032 2.010067 CATTGGGTGGGTGGGATCT 58.990 57.895 0.00 0.00 0.00 2.75
906 1033 1.758122 GCATTGGGTGGGTGGGATC 60.758 63.158 0.00 0.00 0.00 3.36
908 1035 4.358841 CGCATTGGGTGGGTGGGA 62.359 66.667 0.00 0.00 36.12 4.37
1085 1236 1.481871 TACGCTAAGGAAGTCCAGGG 58.518 55.000 0.00 0.52 38.89 4.45
1101 1255 1.154301 AGGCACGCGCATTTTTACG 60.154 52.632 5.73 0.00 41.24 3.18
1104 1258 2.049248 CCAGGCACGCGCATTTTT 60.049 55.556 5.73 0.00 41.24 1.94
1135 1289 3.136123 CCTCCTGCAATGCCACGG 61.136 66.667 1.53 0.49 0.00 4.94
1143 1297 3.650950 GCCCTCACCCTCCTGCAA 61.651 66.667 0.00 0.00 0.00 4.08
1267 1441 4.910585 GGATGTAGGGGCACGCCG 62.911 72.222 1.14 0.00 44.92 6.46
1394 1568 1.480954 GGTGAGATGGTAAGGCGAGAA 59.519 52.381 0.00 0.00 0.00 2.87
1406 1580 1.807165 CGTGAGTGGCGGTGAGATG 60.807 63.158 0.00 0.00 0.00 2.90
1448 1628 1.153958 GACCGTACCCTACACGCAC 60.154 63.158 0.00 0.00 38.07 5.34
1456 1636 3.307089 ATCCCACCGACCGTACCCT 62.307 63.158 0.00 0.00 0.00 4.34
1466 1646 1.303236 TGCACTTTGGATCCCACCG 60.303 57.895 9.90 0.00 30.78 4.94
1467 1647 1.586154 CGTGCACTTTGGATCCCACC 61.586 60.000 16.19 0.00 30.78 4.61
1468 1648 1.875963 CGTGCACTTTGGATCCCAC 59.124 57.895 16.19 7.87 30.78 4.61
1469 1649 1.971167 GCGTGCACTTTGGATCCCA 60.971 57.895 16.19 0.00 0.00 4.37
1472 1652 2.877691 GGGCGTGCACTTTGGATC 59.122 61.111 16.19 0.00 0.00 3.36
1505 1685 0.506932 CCGTATCTTTATGCGCGGTG 59.493 55.000 8.83 0.00 39.56 4.94
1526 1706 0.179116 TCGTCTCGTCTACTCCTCCG 60.179 60.000 0.00 0.00 0.00 4.63
1528 1708 2.298411 ACTCGTCTCGTCTACTCCTC 57.702 55.000 0.00 0.00 0.00 3.71
1529 1709 2.481795 GCTACTCGTCTCGTCTACTCCT 60.482 54.545 0.00 0.00 0.00 3.69
1530 1710 1.860326 GCTACTCGTCTCGTCTACTCC 59.140 57.143 0.00 0.00 0.00 3.85
1531 1711 1.518102 CGCTACTCGTCTCGTCTACTC 59.482 57.143 0.00 0.00 0.00 2.59
1532 1712 1.558741 CGCTACTCGTCTCGTCTACT 58.441 55.000 0.00 0.00 0.00 2.57
1533 1713 0.043138 GCGCTACTCGTCTCGTCTAC 60.043 60.000 0.00 0.00 41.07 2.59
1534 1714 1.150567 GGCGCTACTCGTCTCGTCTA 61.151 60.000 7.64 0.00 40.20 2.59
1535 1715 2.462782 GGCGCTACTCGTCTCGTCT 61.463 63.158 7.64 0.00 40.20 4.18
1536 1716 2.023041 GGCGCTACTCGTCTCGTC 59.977 66.667 7.64 0.00 40.20 4.20
1537 1717 3.862402 CGGCGCTACTCGTCTCGT 61.862 66.667 7.64 0.00 41.41 4.18
1539 1719 2.868999 AAAGCGGCGCTACTCGTCTC 62.869 60.000 36.59 0.00 41.41 3.36
1540 1720 2.991076 AAAGCGGCGCTACTCGTCT 61.991 57.895 36.59 15.28 41.41 4.18
1541 1721 2.506438 AAAGCGGCGCTACTCGTC 60.506 61.111 36.59 0.91 38.25 4.20
1542 1722 2.809601 CAAAGCGGCGCTACTCGT 60.810 61.111 36.59 17.01 38.25 4.18
1543 1723 2.380410 AACAAAGCGGCGCTACTCG 61.380 57.895 36.59 24.09 38.25 4.18
1544 1724 1.132640 CAACAAAGCGGCGCTACTC 59.867 57.895 36.59 3.59 38.25 2.59
1545 1725 2.966309 GCAACAAAGCGGCGCTACT 61.966 57.895 36.59 22.57 38.25 2.57
1546 1726 2.501865 GCAACAAAGCGGCGCTAC 60.502 61.111 36.59 16.18 38.25 3.58
1554 1734 3.508648 TTTCTACGTACGCAACAAAGC 57.491 42.857 16.72 0.00 0.00 3.51
1555 1735 4.150980 TGGATTTCTACGTACGCAACAAAG 59.849 41.667 16.72 3.75 0.00 2.77
1556 1736 4.056740 TGGATTTCTACGTACGCAACAAA 58.943 39.130 16.72 9.72 0.00 2.83
1557 1737 3.651206 TGGATTTCTACGTACGCAACAA 58.349 40.909 16.72 4.04 0.00 2.83
1558 1738 3.057386 TCTGGATTTCTACGTACGCAACA 60.057 43.478 16.72 2.76 0.00 3.33
1559 1739 3.504863 TCTGGATTTCTACGTACGCAAC 58.495 45.455 16.72 0.12 0.00 4.17
1560 1740 3.853831 TCTGGATTTCTACGTACGCAA 57.146 42.857 16.72 2.59 0.00 4.85
1561 1741 3.853831 TTCTGGATTTCTACGTACGCA 57.146 42.857 16.72 0.23 0.00 5.24
1579 1759 7.591006 TTCTATCCACGACACAAGTAATTTC 57.409 36.000 0.00 0.00 0.00 2.17
1590 1840 5.758924 CGTCAATCTATTCTATCCACGACA 58.241 41.667 0.00 0.00 0.00 4.35
1591 1841 4.617645 GCGTCAATCTATTCTATCCACGAC 59.382 45.833 0.00 0.00 0.00 4.34
1592 1842 4.612939 CGCGTCAATCTATTCTATCCACGA 60.613 45.833 0.00 0.00 0.00 4.35
1593 1843 3.604198 CGCGTCAATCTATTCTATCCACG 59.396 47.826 0.00 0.00 0.00 4.94
1594 1844 3.921021 CCGCGTCAATCTATTCTATCCAC 59.079 47.826 4.92 0.00 0.00 4.02
1595 1845 3.056821 CCCGCGTCAATCTATTCTATCCA 60.057 47.826 4.92 0.00 0.00 3.41
1596 1846 3.192844 TCCCGCGTCAATCTATTCTATCC 59.807 47.826 4.92 0.00 0.00 2.59
1597 1847 4.436242 TCCCGCGTCAATCTATTCTATC 57.564 45.455 4.92 0.00 0.00 2.08
1598 1848 4.038763 TGTTCCCGCGTCAATCTATTCTAT 59.961 41.667 4.92 0.00 0.00 1.98
1599 1849 3.382227 TGTTCCCGCGTCAATCTATTCTA 59.618 43.478 4.92 0.00 0.00 2.10
1600 1850 2.167693 TGTTCCCGCGTCAATCTATTCT 59.832 45.455 4.92 0.00 0.00 2.40
1601 1851 2.540101 CTGTTCCCGCGTCAATCTATTC 59.460 50.000 4.92 0.00 0.00 1.75
1602 1852 2.550978 CTGTTCCCGCGTCAATCTATT 58.449 47.619 4.92 0.00 0.00 1.73
1701 1966 0.737715 CTGTAGCGCTGTCCTTCCAC 60.738 60.000 22.90 8.08 0.00 4.02
1738 2003 0.188342 AGAGAGAGAGAGGGGATGGC 59.812 60.000 0.00 0.00 0.00 4.40
1745 2010 4.222336 AGAGAGAGAGAGAGAGAGAGAGG 58.778 52.174 0.00 0.00 0.00 3.69
1752 2017 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1753 2018 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1754 2019 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1755 2020 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1756 2021 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1757 2022 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1758 2023 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1759 2024 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1760 2025 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1761 2026 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1762 2027 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1763 2028 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1764 2029 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1765 2030 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1766 2031 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1767 2032 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1768 2033 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1769 2034 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1770 2035 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1771 2036 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1772 2037 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1773 2038 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1774 2039 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1775 2040 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1776 2041 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1777 2042 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1778 2043 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1779 2044 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1780 2045 5.009911 CAGAGAGAGAGAGAGAGAGAGAGAG 59.990 52.000 0.00 0.00 0.00 3.20
1781 2046 4.892345 CAGAGAGAGAGAGAGAGAGAGAGA 59.108 50.000 0.00 0.00 0.00 3.10
1782 2047 4.648762 ACAGAGAGAGAGAGAGAGAGAGAG 59.351 50.000 0.00 0.00 0.00 3.20
1783 2048 4.614475 ACAGAGAGAGAGAGAGAGAGAGA 58.386 47.826 0.00 0.00 0.00 3.10
1784 2049 5.128499 AGAACAGAGAGAGAGAGAGAGAGAG 59.872 48.000 0.00 0.00 0.00 3.20
1785 2050 5.026121 AGAACAGAGAGAGAGAGAGAGAGA 58.974 45.833 0.00 0.00 0.00 3.10
1786 2051 5.350504 AGAACAGAGAGAGAGAGAGAGAG 57.649 47.826 0.00 0.00 0.00 3.20
1787 2052 4.142160 CGAGAACAGAGAGAGAGAGAGAGA 60.142 50.000 0.00 0.00 0.00 3.10
1788 2053 4.115516 CGAGAACAGAGAGAGAGAGAGAG 58.884 52.174 0.00 0.00 0.00 3.20
1789 2054 3.513912 ACGAGAACAGAGAGAGAGAGAGA 59.486 47.826 0.00 0.00 0.00 3.10
1790 2055 3.861840 ACGAGAACAGAGAGAGAGAGAG 58.138 50.000 0.00 0.00 0.00 3.20
1791 2056 3.369052 GGACGAGAACAGAGAGAGAGAGA 60.369 52.174 0.00 0.00 0.00 3.10
1792 2057 2.936498 GGACGAGAACAGAGAGAGAGAG 59.064 54.545 0.00 0.00 0.00 3.20
1793 2058 2.569853 AGGACGAGAACAGAGAGAGAGA 59.430 50.000 0.00 0.00 0.00 3.10
1794 2059 2.985896 AGGACGAGAACAGAGAGAGAG 58.014 52.381 0.00 0.00 0.00 3.20
1795 2060 3.369681 GGTAGGACGAGAACAGAGAGAGA 60.370 52.174 0.00 0.00 0.00 3.10
1796 2061 2.940410 GGTAGGACGAGAACAGAGAGAG 59.060 54.545 0.00 0.00 0.00 3.20
1797 2062 2.305052 TGGTAGGACGAGAACAGAGAGA 59.695 50.000 0.00 0.00 0.00 3.10
1798 2063 2.712709 TGGTAGGACGAGAACAGAGAG 58.287 52.381 0.00 0.00 0.00 3.20
1799 2064 2.818432 GTTGGTAGGACGAGAACAGAGA 59.182 50.000 0.00 0.00 0.00 3.10
1812 2077 3.746492 GCTGAGTAACTTGTGTTGGTAGG 59.254 47.826 0.00 0.00 37.59 3.18
1813 2078 4.377021 TGCTGAGTAACTTGTGTTGGTAG 58.623 43.478 0.00 0.00 37.59 3.18
1841 2106 6.292542 GGCTTTGAAGTTTTGAATCTTTGAGC 60.293 38.462 0.00 0.00 0.00 4.26
1874 2139 4.798907 CCGTTCATTACTAGCAGTACAGTG 59.201 45.833 0.00 0.00 28.93 3.66
1882 2147 1.202371 CCTCGCCGTTCATTACTAGCA 60.202 52.381 0.00 0.00 0.00 3.49
1883 2148 1.066605 TCCTCGCCGTTCATTACTAGC 59.933 52.381 0.00 0.00 0.00 3.42
1884 2149 2.287668 CCTCCTCGCCGTTCATTACTAG 60.288 54.545 0.00 0.00 0.00 2.57
1889 2154 0.175073 GTACCTCCTCGCCGTTCATT 59.825 55.000 0.00 0.00 0.00 2.57
1935 2200 6.874134 AGACACACACAAGGATCATAACTAAC 59.126 38.462 0.00 0.00 0.00 2.34
1936 2201 7.004555 AGACACACACAAGGATCATAACTAA 57.995 36.000 0.00 0.00 0.00 2.24
1937 2202 6.605471 AGACACACACAAGGATCATAACTA 57.395 37.500 0.00 0.00 0.00 2.24
1938 2203 5.489792 AGACACACACAAGGATCATAACT 57.510 39.130 0.00 0.00 0.00 2.24
1939 2204 8.982685 CATATAGACACACACAAGGATCATAAC 58.017 37.037 0.00 0.00 0.00 1.89
1954 2219 3.442273 TCACGTGAGCACATATAGACACA 59.558 43.478 15.76 0.00 0.00 3.72
1964 2229 1.668793 CCTGCATCACGTGAGCACA 60.669 57.895 27.55 21.52 34.13 4.57
1995 2260 3.186047 GCACGTCCCCGACAATCG 61.186 66.667 0.00 0.00 40.07 3.34
2054 2334 1.005394 GCAGCAGTTTGGCAGCAAT 60.005 52.632 0.00 0.00 44.61 3.56
2132 2418 2.401766 GGACCGAAGCCATGCACAG 61.402 63.158 0.00 0.00 0.00 3.66
2212 2503 5.163513 GCACAAGACACTATTGGGATTTTG 58.836 41.667 0.00 0.00 32.60 2.44
2213 2504 4.832266 TGCACAAGACACTATTGGGATTTT 59.168 37.500 0.00 0.00 32.60 1.82
2214 2505 4.406456 TGCACAAGACACTATTGGGATTT 58.594 39.130 0.00 0.00 32.60 2.17
2215 2506 4.032960 TGCACAAGACACTATTGGGATT 57.967 40.909 0.00 0.00 32.60 3.01
2217 2508 3.244875 ACATGCACAAGACACTATTGGGA 60.245 43.478 0.00 0.00 32.60 4.37
2218 2509 3.084039 ACATGCACAAGACACTATTGGG 58.916 45.455 0.00 0.00 34.07 4.12
2219 2510 3.752747 TGACATGCACAAGACACTATTGG 59.247 43.478 0.00 0.00 31.76 3.16
2220 2511 5.329493 CATGACATGCACAAGACACTATTG 58.671 41.667 1.71 0.00 0.00 1.90
2221 2512 4.397103 CCATGACATGCACAAGACACTATT 59.603 41.667 10.10 0.00 0.00 1.73
2223 2514 3.337358 CCATGACATGCACAAGACACTA 58.663 45.455 10.10 0.00 0.00 2.74
2224 2515 2.156917 CCATGACATGCACAAGACACT 58.843 47.619 10.10 0.00 0.00 3.55
2226 2517 0.883153 GCCATGACATGCACAAGACA 59.117 50.000 10.10 0.00 0.00 3.41
2246 2598 1.942776 TGAGCCAATGAGACCTCAGA 58.057 50.000 5.90 0.00 43.61 3.27
2248 2600 2.942752 GCAATGAGCCAATGAGACCTCA 60.943 50.000 1.83 1.83 39.85 3.86
2275 2631 2.892852 TCAGCATTTCCCCAAAAGACTG 59.107 45.455 0.00 0.00 36.09 3.51
2276 2632 3.160269 CTCAGCATTTCCCCAAAAGACT 58.840 45.455 0.00 0.00 0.00 3.24
2277 2633 2.353109 GCTCAGCATTTCCCCAAAAGAC 60.353 50.000 0.00 0.00 0.00 3.01
2298 2658 0.871722 TTTTGGACAGCGAATCACCG 59.128 50.000 0.00 0.00 0.00 4.94
2314 2674 2.415776 CCGCATGAGCCAAAACATTTT 58.584 42.857 0.00 0.00 37.52 1.82
2355 2715 5.826737 TGAGTATAGCTAGTTGACCTGTACC 59.173 44.000 0.00 0.00 0.00 3.34
2359 2719 4.865776 GCTGAGTATAGCTAGTTGACCTG 58.134 47.826 0.00 0.00 40.52 4.00
2444 2848 5.622770 ATTTACCGTGAAAGAATGTCCAC 57.377 39.130 0.00 0.00 0.00 4.02
2456 2864 4.551388 GAATGTTTGCCAATTTACCGTGA 58.449 39.130 0.00 0.00 0.00 4.35
2457 2865 3.677596 GGAATGTTTGCCAATTTACCGTG 59.322 43.478 0.00 0.00 0.00 4.94
2461 2869 3.263170 AGGGGGAATGTTTGCCAATTTAC 59.737 43.478 0.15 0.00 43.95 2.01
2467 2875 2.704190 TTTAGGGGGAATGTTTGCCA 57.296 45.000 0.15 0.00 43.95 4.92
2469 2877 3.832490 AGTCTTTTAGGGGGAATGTTTGC 59.168 43.478 0.00 0.00 0.00 3.68
2478 2886 3.085952 TCATGCAAGTCTTTTAGGGGG 57.914 47.619 0.00 0.00 0.00 5.40
2488 2896 4.240096 CCCAAGTGATTTTCATGCAAGTC 58.760 43.478 0.00 0.00 0.00 3.01
2490 2898 3.007182 ACCCCAAGTGATTTTCATGCAAG 59.993 43.478 0.00 0.00 0.00 4.01
2491 2899 2.971330 ACCCCAAGTGATTTTCATGCAA 59.029 40.909 0.00 0.00 0.00 4.08
2493 2901 3.328505 CAACCCCAAGTGATTTTCATGC 58.671 45.455 0.00 0.00 0.00 4.06
2508 2916 1.679032 CCGAATCTCTGAACCAACCCC 60.679 57.143 0.00 0.00 0.00 4.95
2510 2918 2.622436 CTCCGAATCTCTGAACCAACC 58.378 52.381 0.00 0.00 0.00 3.77
2514 2922 0.456221 TCGCTCCGAATCTCTGAACC 59.544 55.000 0.00 0.00 31.06 3.62
2527 2935 1.126113 CAACACGTAACATGTCGCTCC 59.874 52.381 0.00 0.00 0.00 4.70
2532 2940 3.955771 ACCAACAACACGTAACATGTC 57.044 42.857 0.00 0.00 0.00 3.06
2535 2943 5.508200 AATCAACCAACAACACGTAACAT 57.492 34.783 0.00 0.00 0.00 2.71
2536 2944 4.966965 AATCAACCAACAACACGTAACA 57.033 36.364 0.00 0.00 0.00 2.41
2537 2945 5.096849 ACAAATCAACCAACAACACGTAAC 58.903 37.500 0.00 0.00 0.00 2.50
2538 2946 5.312120 ACAAATCAACCAACAACACGTAA 57.688 34.783 0.00 0.00 0.00 3.18
2539 2947 4.966965 ACAAATCAACCAACAACACGTA 57.033 36.364 0.00 0.00 0.00 3.57
2540 2948 3.859411 ACAAATCAACCAACAACACGT 57.141 38.095 0.00 0.00 0.00 4.49
2541 2949 4.387256 ACAAACAAATCAACCAACAACACG 59.613 37.500 0.00 0.00 0.00 4.49
2542 2950 5.390356 CCACAAACAAATCAACCAACAACAC 60.390 40.000 0.00 0.00 0.00 3.32
2543 2951 4.692625 CCACAAACAAATCAACCAACAACA 59.307 37.500 0.00 0.00 0.00 3.33
2544 2952 4.693095 ACCACAAACAAATCAACCAACAAC 59.307 37.500 0.00 0.00 0.00 3.32
2545 2953 4.899502 ACCACAAACAAATCAACCAACAA 58.100 34.783 0.00 0.00 0.00 2.83
2548 2956 5.152623 TGAACCACAAACAAATCAACCAA 57.847 34.783 0.00 0.00 0.00 3.67
2550 2958 5.600696 AGATGAACCACAAACAAATCAACC 58.399 37.500 0.00 0.00 0.00 3.77
2555 2963 6.096705 TGAACTGAGATGAACCACAAACAAAT 59.903 34.615 0.00 0.00 0.00 2.32
2562 2970 6.820152 CAGAATATGAACTGAGATGAACCACA 59.180 38.462 0.00 0.00 36.38 4.17
2563 2971 7.044181 TCAGAATATGAACTGAGATGAACCAC 58.956 38.462 0.00 0.00 38.08 4.16
2593 3003 8.827177 TCTTAGAACATCACTTTTACGTTGAT 57.173 30.769 0.00 0.00 0.00 2.57
2598 3008 9.193133 TCTTCTTCTTAGAACATCACTTTTACG 57.807 33.333 0.00 0.00 35.49 3.18
2613 3023 9.092876 AGCACGAGAATATTTTCTTCTTCTTAG 57.907 33.333 4.64 0.00 42.34 2.18
2618 3028 5.412594 TGCAGCACGAGAATATTTTCTTCTT 59.587 36.000 4.64 0.00 42.34 2.52
2620 3030 5.221891 TGCAGCACGAGAATATTTTCTTC 57.778 39.130 4.64 0.00 42.34 2.87
2621 3031 4.437930 GCTGCAGCACGAGAATATTTTCTT 60.438 41.667 33.36 0.00 40.59 2.52
2622 3032 3.064545 GCTGCAGCACGAGAATATTTTCT 59.935 43.478 33.36 0.00 41.99 2.52
2623 3033 3.064545 AGCTGCAGCACGAGAATATTTTC 59.935 43.478 38.24 5.09 45.16 2.29
2627 3037 2.208431 GAAGCTGCAGCACGAGAATAT 58.792 47.619 38.24 13.55 45.16 1.28
2629 3039 0.321034 TGAAGCTGCAGCACGAGAAT 60.321 50.000 38.24 15.14 45.16 2.40
2632 3042 1.206072 GTTGAAGCTGCAGCACGAG 59.794 57.895 38.24 2.18 45.16 4.18
2633 3043 2.597713 CGTTGAAGCTGCAGCACGA 61.598 57.895 38.24 26.99 45.16 4.35
2634 3044 2.127496 CGTTGAAGCTGCAGCACG 60.127 61.111 38.24 32.43 45.16 5.34
2761 3171 1.153469 GAAGGAGCTTGAGCCCTCG 60.153 63.158 11.70 0.00 43.38 4.63
2770 3180 1.884444 GACGGTCTCGAAGGAGCTT 59.116 57.895 0.00 0.00 40.26 3.74
2998 3408 5.396213 GGCTTACAGAATCTGGATCTTGTCT 60.396 44.000 15.38 0.00 35.51 3.41
3013 3423 2.443260 TTTGCTCGGCGGCTTACAGA 62.443 55.000 18.47 0.00 0.00 3.41
3022 3432 1.741401 TGGAGATGTTTGCTCGGCG 60.741 57.895 0.00 0.00 33.19 6.46
3023 3433 0.955428 TGTGGAGATGTTTGCTCGGC 60.955 55.000 0.00 0.00 33.19 5.54
3026 3436 3.119708 GGTTGATGTGGAGATGTTTGCTC 60.120 47.826 0.00 0.00 0.00 4.26
3028 3438 2.557924 TGGTTGATGTGGAGATGTTTGC 59.442 45.455 0.00 0.00 0.00 3.68
3039 3449 5.589050 AGTGATCTTGATCATGGTTGATGTG 59.411 40.000 15.23 0.00 42.73 3.21
3040 3450 5.752650 AGTGATCTTGATCATGGTTGATGT 58.247 37.500 15.23 0.00 42.73 3.06
3041 3451 6.694877 AAGTGATCTTGATCATGGTTGATG 57.305 37.500 15.23 0.00 42.73 3.07
3042 3452 6.888088 TCAAAGTGATCTTGATCATGGTTGAT 59.112 34.615 20.20 2.85 37.85 2.57
3043 3453 6.240145 TCAAAGTGATCTTGATCATGGTTGA 58.760 36.000 20.20 20.20 33.79 3.18
3044 3454 6.505044 TCAAAGTGATCTTGATCATGGTTG 57.495 37.500 15.23 16.85 33.79 3.77
3045 3455 6.888088 TCATCAAAGTGATCTTGATCATGGTT 59.112 34.615 15.23 7.88 34.28 3.67
3047 3457 6.937436 TCATCAAAGTGATCTTGATCATGG 57.063 37.500 15.23 6.91 34.28 3.66
3073 3491 3.518634 AGAAGATCAGAGCTTCGTTCC 57.481 47.619 20.23 0.00 44.88 3.62
3204 3631 4.988598 ACGTTGCCGTCCAGCCAG 62.989 66.667 0.00 0.00 46.28 4.85
3357 3784 2.816958 ATCGCCTTGCTCGTGCTG 60.817 61.111 11.19 3.79 40.48 4.41
3435 3862 1.212751 CTCGGACATCTGCGTGACA 59.787 57.895 0.00 0.00 32.09 3.58
3504 3931 2.817396 GCGAGCTGCTCCTTGGTC 60.817 66.667 22.97 0.00 41.73 4.02
3579 4006 0.814457 AGTAGAGCAGCTCGTTCCAG 59.186 55.000 16.99 0.00 35.36 3.86
3604 4031 2.592308 GCTGGCGGGGAAGAAGAT 59.408 61.111 0.00 0.00 0.00 2.40
3640 4067 2.811066 GACGACGATCGACGAGGCT 61.811 63.158 38.10 21.04 43.74 4.58
3641 4068 2.350985 GACGACGATCGACGAGGC 60.351 66.667 38.10 24.62 43.74 4.70
3650 4083 2.330286 TGCATGTTAAACGACGACGAT 58.670 42.857 15.32 0.00 42.66 3.73
3651 4084 1.768510 TGCATGTTAAACGACGACGA 58.231 45.000 15.32 0.00 42.66 4.20
3652 4085 2.678705 GATGCATGTTAAACGACGACG 58.321 47.619 2.46 5.58 45.75 5.12
3653 4086 2.091588 ACGATGCATGTTAAACGACGAC 59.908 45.455 2.46 0.00 0.00 4.34
3656 4089 4.090930 ACTGTACGATGCATGTTAAACGAC 59.909 41.667 2.46 1.86 0.00 4.34
3657 4090 4.090786 CACTGTACGATGCATGTTAAACGA 59.909 41.667 2.46 0.00 0.00 3.85
3658 4091 4.143200 ACACTGTACGATGCATGTTAAACG 60.143 41.667 2.46 2.20 0.00 3.60
3659 4092 5.277601 ACACTGTACGATGCATGTTAAAC 57.722 39.130 2.46 0.00 0.00 2.01
3660 4093 4.090786 CGACACTGTACGATGCATGTTAAA 59.909 41.667 2.46 0.00 0.00 1.52
3661 4094 3.610677 CGACACTGTACGATGCATGTTAA 59.389 43.478 2.46 0.00 0.00 2.01
3670 4103 0.239082 TCGCAACGACACTGTACGAT 59.761 50.000 12.11 0.00 0.00 3.73
3756 4192 3.559171 GGAGAGCAGGGAACACACATTTA 60.559 47.826 0.00 0.00 0.00 1.40
3804 4241 0.106569 AGCCCATGAATCGCATCCAA 60.107 50.000 0.00 0.00 34.15 3.53
3813 4250 0.905809 TGCCAAGCAAGCCCATGAAT 60.906 50.000 0.00 0.00 34.76 2.57
3859 4296 6.753107 AACAATATTTTCTACCGTTGGAGG 57.247 37.500 0.00 0.00 37.30 4.30
3906 4347 6.295632 GGGCATTTAGGTTTAAGGATTTGTGT 60.296 38.462 0.00 0.00 0.00 3.72
3907 4348 6.106003 GGGCATTTAGGTTTAAGGATTTGTG 58.894 40.000 0.00 0.00 0.00 3.33
3916 4357 3.188873 CGAACACGGGCATTTAGGTTTAA 59.811 43.478 0.00 0.00 0.00 1.52
3970 4424 1.217057 AGGGGGATGGCTGTTGACAT 61.217 55.000 0.00 0.00 46.30 3.06
3975 4429 1.937924 GCCTAAGGGGGATGGCTGTT 61.938 60.000 0.00 0.00 41.92 3.16
3976 4430 2.386935 GCCTAAGGGGGATGGCTGT 61.387 63.158 0.00 0.00 41.92 4.40
3980 4434 0.402861 TAAGGGCCTAAGGGGGATGG 60.403 60.000 6.41 0.00 35.12 3.51
3983 4437 0.349091 ATGTAAGGGCCTAAGGGGGA 59.651 55.000 6.41 0.00 35.12 4.81
4070 5256 2.159841 CCGTGCTATGTTTCTGTTGTCG 60.160 50.000 0.00 0.00 0.00 4.35
4078 5264 3.793559 AGTATGGTCCGTGCTATGTTTC 58.206 45.455 0.00 0.00 0.00 2.78
4179 5382 4.096003 ATGTCCAACGCCCCCTCG 62.096 66.667 0.00 0.00 0.00 4.63
4189 5392 2.945008 GCGAGGAAATGATGATGTCCAA 59.055 45.455 4.00 0.00 38.38 3.53
4199 5402 2.582436 GGACCGGCGAGGAAATGA 59.418 61.111 9.30 0.00 45.00 2.57
4282 5485 1.725641 GATGAGCACCGACAATGACA 58.274 50.000 0.00 0.00 0.00 3.58
4311 5514 0.179161 AAACATCTCGTCCTCGCTCG 60.179 55.000 0.00 0.00 36.96 5.03
4406 5610 4.103103 TCTGAGTGCCTCGCGACG 62.103 66.667 3.71 1.73 32.35 5.12
4438 5642 2.146342 AGAACACGAATGCACTCCAAG 58.854 47.619 0.00 0.00 0.00 3.61
4481 5685 1.000843 CCGATGTCCACAACAGAGACA 59.999 52.381 0.00 0.00 42.37 3.41
4504 5708 0.248990 CTTGCACGTGGTGTTGCATT 60.249 50.000 18.88 0.00 35.53 3.56
4506 5710 1.713937 CTCTTGCACGTGGTGTTGCA 61.714 55.000 18.88 4.65 35.75 4.08
4516 5720 1.638467 GATAAGCGGCTCTTGCACG 59.362 57.895 1.45 0.00 41.91 5.34
4517 5721 1.766143 CGGATAAGCGGCTCTTGCAC 61.766 60.000 1.45 0.00 41.91 4.57
4518 5722 1.521457 CGGATAAGCGGCTCTTGCA 60.521 57.895 1.45 0.00 41.91 4.08
4526 5730 1.442184 CGTCGATCCGGATAAGCGG 60.442 63.158 19.15 4.79 0.00 5.52
4527 5731 0.452950 CTCGTCGATCCGGATAAGCG 60.453 60.000 19.15 20.28 0.00 4.68
4563 5767 3.461773 CTCCCACAGATCCCGCGT 61.462 66.667 4.92 0.00 0.00 6.01
4564 5768 4.227134 CCTCCCACAGATCCCGCG 62.227 72.222 0.00 0.00 0.00 6.46
4565 5769 2.367202 TTCCTCCCACAGATCCCGC 61.367 63.158 0.00 0.00 0.00 6.13
4566 5770 0.978146 AGTTCCTCCCACAGATCCCG 60.978 60.000 0.00 0.00 0.00 5.14
4567 5771 1.065126 CAAGTTCCTCCCACAGATCCC 60.065 57.143 0.00 0.00 0.00 3.85
4568 5772 1.680249 GCAAGTTCCTCCCACAGATCC 60.680 57.143 0.00 0.00 0.00 3.36
4569 5773 1.680249 GGCAAGTTCCTCCCACAGATC 60.680 57.143 0.00 0.00 0.00 2.75
4570 5774 0.329596 GGCAAGTTCCTCCCACAGAT 59.670 55.000 0.00 0.00 0.00 2.90
4571 5775 0.768221 AGGCAAGTTCCTCCCACAGA 60.768 55.000 0.00 0.00 0.00 3.41
4572 5776 0.111253 AAGGCAAGTTCCTCCCACAG 59.889 55.000 0.00 0.00 34.82 3.66
4573 5777 0.110486 GAAGGCAAGTTCCTCCCACA 59.890 55.000 0.00 0.00 34.82 4.17
4574 5778 0.110486 TGAAGGCAAGTTCCTCCCAC 59.890 55.000 0.00 0.00 34.82 4.61
4575 5779 0.110486 GTGAAGGCAAGTTCCTCCCA 59.890 55.000 0.00 0.00 34.82 4.37
4576 5780 0.609406 GGTGAAGGCAAGTTCCTCCC 60.609 60.000 0.00 0.00 34.82 4.30
4577 5781 0.955919 CGGTGAAGGCAAGTTCCTCC 60.956 60.000 0.00 0.00 34.82 4.30
4578 5782 1.578206 GCGGTGAAGGCAAGTTCCTC 61.578 60.000 0.00 0.00 34.82 3.71
4579 5783 1.600916 GCGGTGAAGGCAAGTTCCT 60.601 57.895 0.00 0.00 38.31 3.36
4580 5784 2.626780 GGCGGTGAAGGCAAGTTCC 61.627 63.158 0.00 0.00 36.61 3.62
4581 5785 1.896660 TGGCGGTGAAGGCAAGTTC 60.897 57.895 0.00 0.00 43.90 3.01
4582 5786 2.194597 TGGCGGTGAAGGCAAGTT 59.805 55.556 0.00 0.00 43.90 2.66
4586 5790 4.947147 GTGGTGGCGGTGAAGGCA 62.947 66.667 0.00 0.00 44.68 4.75
4589 5793 3.901797 GAGGGTGGTGGCGGTGAAG 62.902 68.421 0.00 0.00 0.00 3.02
4590 5794 3.948719 GAGGGTGGTGGCGGTGAA 61.949 66.667 0.00 0.00 0.00 3.18
4591 5795 4.954118 AGAGGGTGGTGGCGGTGA 62.954 66.667 0.00 0.00 0.00 4.02
4592 5796 4.394712 GAGAGGGTGGTGGCGGTG 62.395 72.222 0.00 0.00 0.00 4.94
4593 5797 4.954118 TGAGAGGGTGGTGGCGGT 62.954 66.667 0.00 0.00 0.00 5.68
4594 5798 2.876368 GAATGAGAGGGTGGTGGCGG 62.876 65.000 0.00 0.00 0.00 6.13
4595 5799 1.450312 GAATGAGAGGGTGGTGGCG 60.450 63.158 0.00 0.00 0.00 5.69
4596 5800 0.678048 GTGAATGAGAGGGTGGTGGC 60.678 60.000 0.00 0.00 0.00 5.01
4597 5801 0.987294 AGTGAATGAGAGGGTGGTGG 59.013 55.000 0.00 0.00 0.00 4.61
4598 5802 1.404717 CGAGTGAATGAGAGGGTGGTG 60.405 57.143 0.00 0.00 0.00 4.17
4599 5803 0.898320 CGAGTGAATGAGAGGGTGGT 59.102 55.000 0.00 0.00 0.00 4.16
4600 5804 0.460987 GCGAGTGAATGAGAGGGTGG 60.461 60.000 0.00 0.00 0.00 4.61
4601 5805 0.534412 AGCGAGTGAATGAGAGGGTG 59.466 55.000 0.00 0.00 0.00 4.61
4602 5806 2.145397 TAGCGAGTGAATGAGAGGGT 57.855 50.000 0.00 0.00 0.00 4.34
4603 5807 2.890311 AGATAGCGAGTGAATGAGAGGG 59.110 50.000 0.00 0.00 0.00 4.30
4604 5808 3.820467 AGAGATAGCGAGTGAATGAGAGG 59.180 47.826 0.00 0.00 0.00 3.69
4605 5809 5.214417 CAAGAGATAGCGAGTGAATGAGAG 58.786 45.833 0.00 0.00 0.00 3.20
4606 5810 4.498850 GCAAGAGATAGCGAGTGAATGAGA 60.499 45.833 0.00 0.00 0.00 3.27
4607 5811 3.735240 GCAAGAGATAGCGAGTGAATGAG 59.265 47.826 0.00 0.00 0.00 2.90
4608 5812 3.711086 GCAAGAGATAGCGAGTGAATGA 58.289 45.455 0.00 0.00 0.00 2.57
4618 5822 2.240500 CCACGCCGCAAGAGATAGC 61.241 63.158 0.00 0.00 43.02 2.97
4619 5823 4.018609 CCACGCCGCAAGAGATAG 57.981 61.111 0.00 0.00 43.02 2.08


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.