>input_sequence_29877
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------------------------AT------GGCCAAGCTCCTCGCCGTCCTGGCCCTCGTGGCCGCCGCCGCGCCGTT
CCTCGGCGTCGCTGGCCAGGTACGCGTCGCCGGCACCC---TGGACTTCCTTAGCGTAAAAATGCGCGTGCCTGGCTAAT
GTTTGCTGCCGTGGCATTGC--------AGG---AGGGTGAGGGCGG---------GTCGGAGCTGCTGCCGTTCGCGGT
GGGCGCGGCGCCGGAGGGGTGCGACGTCGGGCAGGGCGAGTGGGTGTACGACGAGGCGGCGGCGCCGGCGTACGAGGAGG
CGGCGTGCCCCTACATCCCGGCCGAGCTGACCTGCCAGGCGCACGGCCGCCCCGACAAGTCGTACCAGCACTGGCGGTGG
CAGCCCCGCGGCTGCTCGCTCCCCAGGTGCGCTCTCCCGCCGGCGTGTTCTCGCCTTACCATCTCACCGCCACTC----A
CGATGAG--CTCGCGCACGGTAGATCGGTGCGTGTAGGGTACGGTCGGTGGGATCCAAAGTGCACGCCCGTCACGCACGC
AAGGCACCGCGCATAAAGATACGGACGGAGGAGTAGACGAGACGAGTAGCGCCGCTTTGTTGCGTACGTAGAAATCCAGA
AATTACTT----------------------------------------------------------------------GT
GTCGTGGATAGAATAGATTGACGCGGGAACAGCTCGACCGATGTGGTAATTTCGTGAGCTCCAGCTCTAGCTAAGCCAAT
AATGC---------------GGAGGCACGGTAGGGCCTTTGCGCCGTGGAAGGACAGCGCTACAGCGCAGGGTAGGTGAG
GCGCCATCCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTTCTCGTCCTA
CCAACACAAGTTACTCAGCAGTAGAGCTCAAAGATTCAAAACTTCAAAGCCGTTATAGCACTGTACTGCTAGTAATGAAC
GGCGAGGAGGTACTGCTGCTGGGTGATTATCGTGAAGAGGTTAGTTATGATCCTTGTGTGTGTCTATATGTGCTCACGTG
ATGCAGGAGCTAGCACTACCGATTGTCGG------------GGACGTG---CCTGCGTTCTAGCCGCAATTTTAACAGAG
CAAATTAACAAAAATTGCTGCCAAACTGCTGCGGATTCCGCACTTTT------GCTCTACCCCAAAACTGTGGCAAGCCA
GGGGCACGCCTTGGTGGCTGTGCATGGCTTCGGTCCAG-----ATGCCAAACATGCACGCCGTGCAGACAAACGAAACGA
GGTCCATCAACGTTGGTGGATTCAAAATCCCAATAGTG------------------------------------------
-------------------TCTTGTGCATGTCATGGCTCT----GAGGTCTCATTGGCTCATTGCACAGCCAGTCTTTTG
G----GGAAATGCTGAGCGGTGATTCGCTGTCCAAAATGTTTTGGCTCATGCGGCAGGGTTGGGTGGGACGGGAGGTACA
GGTCAACTAGCTATACTCAGCTGCAGTTGTTGCACTCG---------------------------------------CTA
CGCTGATCGATCTAGTAGTTTGATG-----AATAATTAGACTTTTGAGTGGACAT---T-CTTTCACGGTAAATTGGCAA
ACATTCCCCCTAAAAGACTTGCATGAAAATCACTTGGGGTTGGTTCAGAGATTCGGAGCGACATGTTACGTGTTGTTGGT
TGATTTGTTTGTGGTTCATCTCAGTTCATATTCTGA--TTTTATCAACGTAAAAGTGATGTTCTAAGAAGAAGAAAATAT
TCTCGTGCTGCAGCTTCAACGCGACGGTGATGCTGGAGATGCTGCGCGGGAAGCGGATGCTGTTCGTGGGCGACGCGCTG
AACCGGGCGCAGTACGTGTCGCTGCTCTGCCTCCTCCACCGCGCCATGCCCGAGGGCTCAAGCTCCTTCGAGACCGTCGA
CGCCCTCAGCATCTTCAGGGCCAAGGCCTACGACGCCACCATCGAGTTCTACTGGGCGCCGCTCCTCGCCGAGTCCAACG
CCGACGACGGCGTCGAGCACCAGCTCAACGACCGCGTCATCCGCGGCGCCCCCATGGACCGCCACTCCCGCTTCTGGAAG
GGCGCCGACGTCCTCGTCTTCAACTCCTACCTCTGGTGGATGACCGGAGACAAGATCCAGATTCTGTAAGCCGCCGAGCA
AACATCTCCACATCAAC--------CATGATCAAGATCACTTTGATGATCGGAACGAA-----GCTCTGATCTTCTTCTG
TATGCATGGTTGGTC----GCAGGAGGGGCGCCGACAACGACATGAGCAAGGACATCGTGGAGATGGGGGCGGAGGAGGC
CTACAGGCTGGTGCTGCACCAGGTGGTGCGCTGGCTGGACGGCAACGTGGACCCCAAGAAGTCCCGGGTCTTCTTCGTCA
CGGCGTCGTCCACGCACGCCAGCGGCCAGCTCTGGGGCGACGAGGCGGAGGGCAGCAACTGCCACGGCCAGACCAAGCCC
ATCGCCGACGCGTCCTACTGGGGCAGCACGAGCAAGGCGATGCTGCGGGTGACCGGCGAGGTGCTGGGCGCGTCCGCGAG
GGTGCCGGTGGGCGTGGTGAATGTCACGCAGATGTCCGAGTACCGCCGGGACGCGCACACGCAGGTGTACCGGGAGCAGT
GGGCGCCGCCGACCAAGGAGCAGCTCGCCGACCCCAAGAGCTACGCCGACTGCACCCACTGGTGCCTCCCCGGCGTGCCC
GACGCCTGGAACGAGCTGCTCTACTGGAAGATCTTCTTCCCCGCCAGCGACCAGGCGCTCTGA-----------------
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>chr5A_1_TraesCS5A01G473100
ATTTTTAACAAAAATTGCGGAGGTATAGCATGAACCGTGCGCGTGGAGTATAAACGAGCGAACAAATCCCACCC------
AA-----ATGAGCTTCTTTGCGCAGAAGCAACGCTCGCTGTAACATGAGCATT-------CCTCGAGCGTGTCGATCCTT
--TCCACCACGAACTCGGCG--TTCTCCCTTTCGCAACAGGGAGTTCTTACCGGTT-CCCCCCGCCGGAGAAAAGCGTAC
CGCGGAGGG----------------CCGTCGCGCTAGCTGCTGCTATAAAGCGC----ACGTTCGTTCGCTCCTGCAGGA
CGTACTTCTTCCGTTCTGAATTACTTGTCGCAGGTATGGATGTATCTAGATGTATTTTAGTTCTGGATATATCCATTTTT
GCGACGAGTAATTTGAAACGGAGGGAATAATAATCAAGAACGTAGTCGCAACAACAATAAA-------------ACTGAA
TTTTA---------------CACCGTGCACCAACCCTGACGAGAATTTGGACGGAGTTCCAACCAGATAGCATCAGAGCA
ACCCACCCACCTACCGTG-----------------------GCAGTCCGGGCAAGTCGTGCCTTGCAAAGGAGCGCACGC
ACACCCATCGCCCACCCGCCACCGTACCGCACCGGCGCGAGCTCGCT--ACAGTACTGCCGATCGGGGCGTCGAGCCGCA
CTCCGTCGGTGGC---------TCGGAAAGGGAGTGAGATCTCGCTTTAGGTTTAGGAAATTCAAAAGCTGCCG------
---CGCGGCCGTGCGACACAAGCTAGCTCTAGCCAGCACCCCCCAATGTCGTCGCGC---CTACTACTACCAGTGGTCTG
GTGTGGTAGGAGTGGTAGGAGTACGTGCG-GCGGTTGTTGGAGCCGGACCCTCG-----CGCCCGCGTTATATCTGCTG-
--GAGCGCGAGCCCGATCCCGTCAGTGTCCCGGTGGTCTGGTGGCTACTCAGAGTGAGCTAGAGCTTGCCGAGAT-----
----------CCCACCCACCCAATGCGCGCGCGCCCCTCGTGAGCTACCAGAGCCGACCGACACACCCAGCAGAGCAGC-
--AACCAGCGAACTGACGGACGCCAT------GGCCAAGCTCCTCGCCGTCCTGGCCCTCGTGGCCGCCGCCGCGCCGTT
CCTCGGCGTCGCTGGCCAGGTACGCGTCGCCGGCACCC---TGGACTTCCTTAGCGTAAAAATGCGCGTGCCTGGCTAAT
GTTTGCTGCCGTGGCATTGC--------AGG---AGGGTGAGGGCGG---------GTCGGAGCTGCTGCCGTTCGCGGT
GGGCGCGGCGCCGGAGGGGTGCGACGTCGGGCAGGGCGAGTGGGTGTACGACGAGGCGGCGGCGCCGGCGTACGAGGAGG
CGGCGTGCCCCTACATCCCGGCCGAGCTGACCTGCCAGGCGCACGGCCGCCCCGACAAGTCGTACCAGCACTGGCGGTGG
CAGCCCCGCGGCTGCTCGCTCCCCAGGTGCGCTCTCCCGCCGGCGTGTTCTCGCCTTACCATCTCACCGCCACTC----A
CGATGAG--CTCGCGCACGGTAGATCGGTGCGTGTAGGGTACGGTCGGTGGGATCCAAAGTGCACGCCCGTCACGCACGC
AAGGCACCGCGCATAAAGATACGGACGGAGGAGTAGACGAGACGAGTAGCGCCGCTTTGTTGCGTACGTAGAAATCCAGA
AATTACTT----------------------------------------------------------------------GT
GTCGTGGATAGAATAGATTGACGCGGGAACAGCTCGACCGATGTGGTAATTTCGTGAGCTCCAGCTCTAGCTAAGCCAAT
AATGC---------------GGAGGCACGGTAGGGCCTTTGCGCCGTGGAAGGACAGCGCTACAGCGCAGGGTAGGTGAG
GCGCCATCCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTTCTCGTCCTA
CCAACACAAGTTACTCAGCAGTAGAGCTCAAAGATTCAAAACTTCAAAGCCGTTATAGCACTGTACTGCTAGTAATGAAC
GGCGAGGAGGTACTGCTGCTGGGTGATTATCGTGAAGAGGTTAGTTATGATCCTTGTGTGTGTCTATATGTGCTCACGTG
ATGCAGGAGCTAGCACTACCGATTGTCGG------------GGACGTG---CCTGCGTTCTAGCCGCAATTTTAACAGAG
CAAATTAACAAAAATTGCTGCCAAACTGCTGCGGATTCCGCACTTTT------GCTCTACCCCAAAACTGTGGCAAGCCA
GGGGCACGCCTTGGTGGCTGTGCATGGCTTCGGTCCAG-----ATGCCAAACATGCACGCCGTGCAGACAAACGAAACGA
GGTCCATCAACGTTGGTGGATTCAAAATCCCAATAGTG------------------------------------------
-------------------TCTTGTGCATGTCATGGCTCT----GAGGTCTCATTGGCTCATTGCACAGCCAGTCTTTTG
G----GGAAATGCTGAGCGGTGATTCGCTGTCCAAAATGTTTTGGCTCATGCGGCAGGGTTGGGTGGGACGGGAGGTACA
GGTCAACTAGCTATACTCAGCTGCAGTTGTTGCACTCG---------------------------------------CTA
CGCTGATCGATCTAGTAGTTTGATG-----AATAATTAGACTTTTGAGTGGACAT---T-CTTTCACGGTAAATTGGCAA
ACATTCCCCCTAAAAGACTTGCATGAAAATCACTTGGGGTTGGTTCAGAGATTCGGAGCGACATGTTACGTGTTGTTGGT
TGATTTGTTTGTGGTTCATCTCAGTTCATATTCTGA--TTTTATCAACGTAAAAGTGATGTTCTAAGAAGAAGAAAATAT
TCTCGTGCTGCAGCTTCAACGCGACGGTGATGCTGGAGATGCTGCGCGGGAAGCGGATGCTGTTCGTGGGCGACGCGCTG
AACCGGGCGCAGTACGTGTCGCTGCTCTGCCTCCTCCACCGCGCCATGCCCGAGGGCTCAAGCTCCTTCGAGACCGTCGA
CGCCCTCAGCATCTTCAGGGCCAAGGCCTACGACGCCACCATCGAGTTCTACTGGGCGCCGCTCCTCGCCGAGTCCAACG
CCGACGACGGCGTCGAGCACCAGCTCAACGACCGCGTCATCCGCGGCGCCCCCATGGACCGCCACTCCCGCTTCTGGAAG
GGCGCCGACGTCCTCGTCTTCAACTCCTACCTCTGGTGGATGACCGGAGACAAGATCCAGATTCTGTAAGCCGCCGAGCA
AACATCTCCACATCAAC--------CATGATCAAGATCACTTTGATGATCGGAACGAA-----GCTCTGATCTTCTTCTG
TATGCATGGTTGGTC----GCAGGAGGGGCGCCGACAACGACATGAGCAAGGACATCGTGGAGATGGGGGCGGAGGAGGC
CTACAGGCTGGTGCTGCACCAGGTGGTGCGCTGGCTGGACGGCAACGTGGACCCCAAGAAGTCCCGGGTCTTCTTCGTCA
CGGCGTCGTCCACGCACGCCAGCGGCCAGCTCTGGGGCGACGAGGCGGAGGGCAGCAACTGCCACGGCCAGACCAAGCCC
ATCGCCGACGCGTCCTACTGGGGCAGCACGAGCAAGGCGATGCTGCGGGTGACCGGCGAGGTGCTGGGCGCGTCCGCGAG
GGTGCCGGTGGGCGTGGTGAATGTCACGCAGATGTCCGAGTACCGCCGGGACGCGCACACGCAGGTGTACCGGGAGCAGT
GGGCGCCGCCGACCAAGGAGCAGCTCGCCGACCCCAAGAGCTACGCCGACTGCACCCACTGGTGCCTCCCCGGCGTGCCC
GACGCCTGGAACGAGCTGCTCTACTGGAAGATCTTCTTCCCCGCCAGCGACCAGGCGCTCTGACGCAGCC------TCGT
CGATCGTCGTCGTTTAACATGCATCGTACAGTGTCGTTGCGATCGGCGTGCTGCGTC--GTGTGGACGCCATGGCTATAA
TTCGTTCCCTTTTTT-GGCAAAAAATGTGATTAAATGTGTGTTCC-CTGCTCTCCTCACCGGATCTTGTCCCCTTACACG
TTGGATGCGATTCATGGGCTTGCTTGGCACGTACAGGCCACGGAAACGCTGAAAAC----CTCCAACGGTAGAAAATATT
GTTAAGGACATCTACAAATGGACTTCACACAAATCCTTAAACCTAAATGCCCGTGTTCGGGCGCATCCG-----------
--CCGGTCACCCCTCATGTCTCCATGTCAACAGCCATCCCCCTTAGGCCCTTAC--------------------------
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------------------------------------------------------------------ATCTGGCCCCCAAA
TCCATACTAGCGATGCAAGTTGATGCAAAGTATGTAGATCAACATATCAACATTCCGACAACAGAAACATAGCACGGACC
ATACTTATTCGGCATACAGTTTTGTACATTCCGGCCCAAAAGTTCATCACACGAATCTAGATAC----------------
-ATAGATAAACATAGCTAAACCGAGGGGGCGTTGGACATCATCATTTCCTCGCCGGTCCCTTCTCCTTGCGGCCACGAGA
GTGGTGGTAGTAGTACTCCGCGTAGGCGTCGGCGGCCGAAGGGGTGTCATTGTCGGTGCTCATCGTGCCCCGCCGAG-CG
AGGACGAGATGTTTGTCAGTGAGACGATGGGCAGCGCTCGCCTGCTCCTTCGTGAGCCGAGCCACTTACGCGTCGACAGG
CACCCTCTCCGTCGCGAGGCACTCAGACTGCTCGGTGCTGACTTGGAGTGCATTCGTGTTCTTGCACTGCGGGCACCTCG
TGTCTGTCTCTGTTGTGGACATCGGCGAATGCAACACCACGTGCAAGAGCCGCTTATCCGGATCGACGAGCGGCGCGGTC
GCAGACACGCGGGATCTGTGGGAGGAACTTGCCTTCACCGCCACCACCCTCTCATTCACTCGCTATCTCTTGCGGCGTGG
>chr5B_10
---------AAAAATTGCGGAGGTATAGCATGAACCGTGTGCGTGGAGTAGAAACGAGCGAACAAATCCCACCTAAATTA
AA-----ATGAGCTTCTTTACGCATAAGCAACGCTCGTTGTAATAGGAGTACT-------CCTCAATCGTGTCAATCCTT
--TCCACCACGAACTTCCCTTTTTTTTCCTTTCGCGACAGGGAGTTCTCACCAGTT-TCCCCCGCCGGAGAAAAGCAAAC
GTCGGCGGCAGCATAAGGCGGAGGACCGTCGCGCTAGCTGCTGCTACAAAGCGC----ACGTTCGTTCGCTACGGCACGA
CGC-----------------------------------------------------------------------------
-------------------------------AATTAAGAACGTACCCACAACAATAATAAAGGCTCGACGGTA-ACTGAA
TTTTGCAC--------------------------------------TTCGACAGAATTCCAACCAGATAGCGTCAGAGCA
GCG---------TCCGACCTGTGAGCGACCCACCTACCGTGGCAGTCTGGGCAAGTCGTGCCTTGCAAAGAAGCGCACGC
ACACCCATCGCCTACCCGCCACCGTACCGTACCGGCGCGACCTCGCTCTACAGCAATGCCGATCGGAGCGTCGAGCCACA
CCCCGTCGGTCGA-------------AAAGGGAGTGAGATCTCGCTTTAGTTTTAGGAAATTCAAAAGC-----------
-----------TGCGACACAAGCTAGCTCTAGCCAGCACCCC--AATGTCGTCGCGC---CTACTACTACCGCCA--CTG
GTGTGGTAGGAGTGGTAGTAGTACGTGCGTGCGGTTGTTGGAGCCGGACCC-CG-----CGCCCGCGTTATATCTGCTG-
--GAGCGCGAGCCCGATCCCGTCAGTGTCCCGGTGGT-----GGCTACTCAGAGTGGGAGCCAAGCTAGAG------CGG
CCAGATCCCACTCACCCACCCAATGCGCGCGCGCCCCTCGTGAGCTACCAGAGCCGACCGACACACTCACCAGAGCACCG
C-------CGAACGGACGAACGCCATGGTGAAGGCGAAGCTCCTCGCTGTGCTGGCCCTCGTGGCCGTCGCCGCGCCGTT
CCTCCGCGCCGCCGGCCAGGTACGC-TCGCCGGCAACC---TGGAGCTCCGGAGAGTGACAATGCGCGTGCGTGGCTAAC
GTTTGCTGTCTTGGTAATGTAATGCAGGAGG---AGGGTGAGGGCGGGGCGAGGCCGTCGGAGCTGCTGCCGTTCGCGGT
GGGCGCGGCGCCGGCGGGGTGCGACGTCGGGCAGGGCGAGTGGGTGTACGACGAGGCGGCGGCGCCGGCGTACGATGAGG
AGGCGTGCCCCTACATCCCGGCGGAGCTGACGTGCCAGGCGCACGGCCGCCCCGACAAGTCGTACCAGCACTGGCGGTGG
CAGCCCCGCGGCTGCTCGCTCCCCAGGTGCGCTCTCCCGCCGGCGTGCTCTCGCCTTACTATCTCACCGCCACTCGCTCA
CGATGAG--CTCGCGCACGGTAGATCGATGCGTGTGGGGTACGGT----GGCATCTAAAGTGAACGGCCGTCACGCACGC
AAGGAACCGCGCATAAAGATACGGAGGAGCAGAC---------------------------GCGTACGTAGAAATCCAAA
AATTACTT----------------------------------------------------------------------G-
------------ATATATTGACGCGGGAGCAGCTCGACC-------TAATTTCGTGAGCTCTAGCTCTAGATAAGCCAAT
AATGCC---------------GAGGCACGGTAGGGCCTTTCCGCCATGGAAGGACAGCGCTACAGCGCAGGGTAGGTGAG
GCACCATCCTCTCTCT----------------------------------------------------GTTCTCGTGGTA
CCAACAGAAGTTACTCAGCTGTAGA--------ATTCAAAAATTCAAAGCCGTTGTAGTACTGTACG--TAGTGATGAAC
GGCGAGGAGGTACTGCTGCTGGGTGATTGTCGTCAAGGGA----TCATGATCCTTGTA----TCTATAGGTGGTCACGTG
ACGCAGGAGCTACCACTCCAGATTGTCGGCTCGGTGCACGGGGACGTG---CCTGCGTTCTAGCCGCAATTTTAACAGAG
CAAATTAACAAAATTTGCTGCCAAATTGCTGTGGATTCCACACTTTTGCTCTGGCTCTACCCCAAAACTGTGGCAAGCCA
GGG-CACGCCTTGGTGGTTGTGCATGGCTTCTGTCCAG-----ATGACAAACATGCACGCCGTGCAGACAAACAAAACGA
GGTCCATCAACGTTGGTGGATTTGGCAGAGGTAGGGAGGGATGGGCCGTGTACGTGCCGTGCCCACAAGTGCACCACCTA
TTTCGTCGTGATCCAGAAATCTTGTGCATGTCATGGCCCCGAGCGAGGTCTCATTGGCTCATTGCACAGC---TCTTTTG
AGGAAGGAAATGCCGAGTGGTGATTCGCTGTCCGAAATGTTTTGGCTCAAGCGGCAGGGTTGGGTGGGACGGGACGTAGA
GGTCACCTACCTATACTCAGCTGCAGTTGTTACACTCGGCAGGTAGCATGTGAGAACAGAGCACTGACCAAAAAAGGCTA
CGCTG-TCAATCTAATTTAGTACTGAATTTAACAATTAGACTTTTGAATGGACAT---TTCTTGTACTATAAATAGAAAA
ACATTTTCCGTAAAATATCCACATGAAAATCACTTCGTGTTAGTTCAGAGATTCAGAGCAACCG---------TGGTTGT
TGCTTTGTTCATGGCCCATCTTAGTTCATATTCACATTTTTTTTCAAGGCAAGAGTAATGTTGTAAGTAATTAAAATTGT
TGAA-TGCTGCAGCTTCAACGCGACGGTGATGCTGGAGATGCTGCGCGGGAAGCGGATGCTGTTCGTGGGCGACTCGCTG
AACCGGGCGCAGTACGTGTCGCTGCTCTGCCTGCTCCACCGCGCCATGCCGGAGGGCTCCACCTCCTTCGAGACCGTCGA
CGCGCTCAGCATCTTCAGGGCCAAGGCCTACGACGCCACCATCGAGTTCTACTGGGCGCCGCTCCTCGCCGAGTCCAACG
CCGACGACGGCGTCGAGCACCAGCTCAACGACCGCGTCATCCGCGGCGCGCCCATGGACCGCCACTCGAGATTCTGGAAG
GGCGCCGACGTCCTCGTCTTCAACTCCTACCTCTGGTGGATGACCGGCGACAAGATCCAGATCCTGTAAGCAACCCAACA
AACATCTCTCTCCAGATCAAATTAACAAGATCCAGATCACTTTGATGATCTCAACGAAGCTCTGCTCTGATCTTCTTCTG
TATGCATGGCTGGTTGGTTGCAGGAGGGGCGCCGACAACGACATGAGCAAGGACATCGTGGAGATGGGCGCGGAGGAGGC
CTACAGGCTGGTGCTGCACCAGGTGGTGCGGTGGCTGGACGGCAACGTGGACCCCAAGAGGTCCCGGGTCTTCTTCGTCA
CGGCGTCGCCCACGCACGCCACCGGCCAGCTCTGGGGCGACGAGGCGGAGGGCAGCAACTGCCACGGCCAGACCAAGCCC
ATCGCCGACGCCTCCTACTGGGGGAGCACCAGCAGGGCGATGCTGCGGGTCACCGGCGAGGTGCTGGCCGCGTCCGCGAG
GGTGCCCGTCGGCGTGGTAAACGTCACGCAGATGTCCGAGTACCGCCGGGACGCGCACACGCAGGTGTACCGGGAGCAGT
GGGCGCCGCCCACCAAGGAGCAGCTCGCCGACCCCAAGAGCTACGCCGACTGCACCCACTGGTGCCTCCCCGGCGTGCCC
GACGCATGGAACGAGCTGCTCTACTGGAAGCTCTTCTTCCCCGCCAACGACCAGGCCCTCTGACGCGTCATCATCGTCGT
CGTCGTTC------TAACATGCGTCGTACAGTGTCGTTGCCATCGGCGTGCTGCATCGTGTGTGGACGCCATGGCTATAG
TTCGTTCCCTTTTTTTGGC----AATGTGATCAAATGTGTGTTCCTATGCTCTTCTCACTGGATCTTGTCCCCTTACACG
CTGGATGCCTTTCACGGGCTTGCGTGGCACGTACAGGCCACAGAAACGCTGAAATTTGACCTCCAGCGGTAGAAAATATT
GTTAAGGACATCTACAAATGGACTTC--ACAAATCCGTAAACCTAAATGCCTGTGTTCAGAGGCGCATCTGCA-AACGGT
GACCGGTCACCCCTCATGTCTCCGTGTCTGCAGACACCCCCCTTAGGCCCTTAC--------------------------
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------------------------------------------------------------------ATTTGGCCCCCAAA
TCCATACTAGCCATGCAAGTTGATGCAAAATATGTAGATCAACATATCAACATTCAGACAACACAAACATAGCATGGATC
ATACTTATTCGGCATACAGTTTTGTACATTCCGGCCCAAAAGTTCATCATACAAATCTAGATAC----------------
-ATAGATAAACATAGCTAAACGGAGGGGCAC-TGGGCATCACCGTTTCCTCGCCGGTCCCTTCTCCATGCGGCCACGAGA
GTGGTGATAGTAGTCCTTCGCGTAGGTGTCGGCGGCCGAAGGGGCGTCATTGTCGGTGCTCATCGTGCCCCGCTGA-ACG
AGGACGAGATGTTTGTCAGTGAGACGATGGGCAGCGCTCGCCTGCTCCTTCGTGAGCCGAGCCACTTACGCATCGACAGC
CACCCTCTCTGTCGCGTGACACTTAGACTGCTCGGTGCTGAGTTGGAGTGCATTCGTGTTCTTGCAGTGCGGGCACCTCG
TGTCCGTCTCTGTTGTGGACATCGGCGGACGCAACACCA-----------------------------------------
--------------------------------------------------------------------------------
>chr5D_10
---------AAAAATTGCGGAGGTATAGCATGAACCGTGTGCGCGGAACATAAACGAGTGAACAAATCCCACATAAATGA
AATTCAAATGAGCTTCTTTACGCAGAAGCAACGAAAGTCGTAACAGGAGTATTCCTCAAACCTCAATGGTGTCAATCGTT
GCTCCACCACGAACTTTAC---TTTTTCTTTTCGCCACAGGGAGCTCCTACCGGTTCTCCCCCGACGGAGAAAAGCAAAC
GTCGGCGGC----------------GCGTCCCTAGCGGCAGCGTACGTACGGCGGACGACCGTCGTGTGCTCCGGCACGA
CGTAATAATTACTG------------------------------------------------------------------
------------------------------TAATTAAGAGCGTACTCACAACAGCACTAAAGGCTCGACGGTAAACTGAA
TTTTGCGCCGCTGCCCTGTGCACCATGCACCAACCCTGACGAGAATTTCGACGGGACTCCAACCAGATGGAATCGGAGCA
GCG---------ACCGTC-----------------------GCAGTCTGGGCAAGTCGTGCCTTGCAAAAGAGCGCATGC
ACATCCATCGCCTACCCGCCACCGTACCGTACCGGCGCGACCTCG--CTACAGTGATGCTGATCGGAGCGTCGAGCCGCA
CCCCGTCGGCCATCTCCGTCGGTCGGAAAGGGAGTGAGATCTCGCTTTAGTTTTAGGAAATTCGAAAGCTGCCGGTAGTA
GTTCGCGGCCGTGCGACACAAGCTAGCTCTAGCCAGCCCCCC--AATGTCGTCGCGCCTACTACTACTACCACCA--CTG
GTGTGGTAGGAGCGGTAGTAGTACGTGCGTGCGGTTGTTGGAGCCGGACCC-CCGCGCCCGCCCGCGTTATATCTGCTGC
TGGAGCACCAGCCCGATCCCGTCAGTGTCCCGGTGGTCTGGTGGCTACTCAGAGTGAGAGCCAAGCCAGAGCTAGAGCGG
CCAGATCCCACCCACTCACCCAATGCGCGCGCGCCCCTCGTGAGCTACCAGAGCCGACCGACACACCCAGCAGAGCAGGA
GAAACCAGCGAACGAACGGACAACAT------GGCGAAGCTCCTCGCCGTCCTTGCCCTCGTGGCCGCCGCCGCGCCGTT
CCTCCGCGCCGCCGGCCAGGTACGCGTCGCCGGCAGTACCATGGAGCTTCGGAGAGTGAGAATGCGCGTGCCTGGCTAAT
GTTTGCTGTGGTGGCAATGTAATGCAGGAGGGTGAGGGTGAGGGCGGGGCGAGGCCGTCGGAGCTGCTGCCGTTCGCGGT
GGGCGCGGCGCCGGAGGGGTGCGACGTCGGGCAGGGCGAGTGGGTGTACGACGAGGCGGCGGCGCCGGCGTACGAGGAGG
AGGCGTGCCCCTACATCCCGGCGGAGCTGACGTGCCAGGCGCACGGCCGCCCCGACAAGTCGTACCAGCACTGGCGGTGG
CAGCCCCGCGGCTGCTCGCTTCCCAGGTGCGCCCGCGCTCTCGCCGGAGTCCATCTATCTTGAAATCTATCTTTGCCGTC
ACTCACTCACTCACGCGGGGTAGATCGATGCGTGTGGAGTACGGT----GAAATCCAAAGTGAATGCCCGCCACGCACGT
AAGGGACCGCGCATAAAGATACGGAGGAGTAGAC---------------------------GGGTAGTACAAGTACGTAG
TAGGAATAGTAGCGGTGCTCTGCTCTGCTGCTTTGTTTACGCTGGCACTCTGAAAAGTCAAGAGTTACCCGTGTCGTGG-
------------ATAGGTTGACGCGGGAAAAATCCGACTGATGTGGTAATTTTGTCAGCTCCAAGCTTAGCTAATACAGT
AAGGCGCGACGCCAATAATGGGCGGCACGGTAGGGCCTTCCCGCCATGGAAGGACAGCGCTACAGGGCAGGGTAGGTGAG
GCACCATCCTCTCTCT------------------------------------------------CTCTGTTCTCGTGGTA
CCAACACAAGTTACTCGGCAGTAGAACTCAAAGATTCAAAACTTCAAAGCCGTTGTGCAGTACGTACTGCC---------
----------------------GTGATTATCGTGAAGAGA----TTATGATCCTTGTGCGTGTCTATAGGTGCTCACGTG
ATGCAGGAGCAAGCACTCCAGATTGTCGGCTCCGTGCACGGGGACGTGCCTCCTGCGTTCTAGCTGCAGTTTTAACAGAG
CAAATTAACGAAATTTACTGCCAAATTGCTGCGGATTCCGCACTTTTCCTCTG------CCCCAAAACTGTGGCAAGCCA
GGG-CACGCCTTGGTGGTTCTGCATGGCTCTGGTCCAAAGAGTATGCCAAACATGCACGCCGTGCAGACAAACGAGACGA
GGTCCATCAACGTTGGTGGATTTGGCAGAGGTAGGGAGGGAGGGACCGTGTACGTGCCGTGCCCACAAGTCCACCACCAA
TTTCGTCGTGATCCAGAAATCTTGTGCATGTCATGGCCCCGAGCGAGGTCTCATTGGCTCATTGCACAGC---TCTTTTG
G----GGAAATGCTGAGTGGTGATTCGCTGTCCGAAAAGTTTTGGCTCAAGCGGCAGGGTTGGGTGGGC-----CGTAGA
GGTCAACTAGCTATACTCAGCTGCAGTTGTTGCACTCGACATGTGCCATGTGAGAGCAGAGCACTGACCAAAAAAGGCTA
CGGTGATCAATCTAATCTAGTAATG-----AATAATTGGACTTCTGAACGGACACAGGTTTTTATATGAGAAATAGACAA
ACATTTCCTCTAAGAATGGTT-----------------------------------------------------------
--------------------------------------------------------------------------------
----GTGCTGCAGCTTCAACGCGACGGTGATGCTGGAGATGCTGCGCGGGAAGCGGATGCTGTTCGTGGGCGACTCGCTG
AACCGGGCGCAGTACGTGTCGCTGCTGTGCCTGCTCCACCGCGCCATGCCGGAGGGCTCCAGCTCCTTCGAGACCGTGGA
CGCCCTCAGCATCTTCCGGGCCAAGGCCTACGACGCCACCATCGAGTTCTACTGGGCCCCGCTCCTCGCCGAGTCCAACG
CCGACGACGGCGTCGAGCACCAGCTCAACGACCGCGTCATCCGCGGCGCCCCCATGGACCGCCACTCCCGCTTCTGGAAG
GGCGCCGACGTCCTCGTCTTCAACTCCTACCTCTGGTGGATGACCGGCGACAAGATCCAGATCCTGTAAGCAACCCAACA
AACATC------------------------TCCAGATCACTTTGATGATCTGAACGAAGCTCTGAC-----CTTCTTCTG
TATGCATGGGCTC---GTTGCAGGAGGGGTGCCGACAACGACATGAGCAAGGACATCGTGGAGATGGGGGCGGAGGAGGC
CTACAGGCTGGTGCTGCACCAGGTGGTCCGGTGGCTGGACGGCAACGTGGACCCCAAGAAGTCCCGGGTCTTCTTCGTCA
CGGCATCGCCCACGCACGCCAGCGGACAGCTCTGGGGCGACGAGGCGGAGGGCAGCAACTGCCACGCCCAGACCAAGCCC
ATCGCCGACGCGTCCTACTGGGGGAGCACCAGCAGGGCGATGCTGCGGGTCACCGGCGAGGTGCTGGGCGCGTCGGCGAG
GGTGCCGGTGGGCGTGGTGAACGTCACGCAGATGTCTGAGTACCGCCGGGACGCGCACACGCAGGTGTACAGGGAGCAGT
GGGCGCCGCCCACCAAGGAGCAGCTCGCCGACCCCAAGAGCTACGCCGACTGCACCCACTGGTGCCTCCCCGGCGTGCCC
GACGCATGGAATGAGCTGCTCTACTGGAAGCTCTTCTTCCCCGCCAACGACCAGGCGCTCTGACGCGTCC------TCGT
CGTCGCTC------TAACATGCGTCGTACAGTGTCGTTGCGATCGTCGTGCTGCGTC--GTGTGGACGCCATGGCTATAA
TTCGTTCCCTTTTTTTGGCAAAAAATGTGATCAAATGTGTGTTCCTCTGCTCTCCTCACCGGATCTTGTCCCGTCACACG
CTGGATGCGTTTCATGGGCTTGCGTGGCACGTATAGGCCACGGAAACGCTGAAATGTGAGCTCCAACGGTAGAAAATATT
GTTAAGACCATCTACAACCAAGCTTC--ACAAATCGAGGCCCTATATCCCGCACAGGCGTGAGGCGCATCCAAGAACAGT
GACCGGTCACCCATCATTTCCTCGTGTCTGCAGTCGCCCTTTAGAGCATCTCCAACAGGCGCGCAACCACGTGGCGCGCT
AATTTTTCTTACAGCGCCGAAATAGCTTTTTTTGACGCGCAGCATGCCGTTGTCTCCAACGGCCGCTGCAAAAAATGGCG
GTAGCTCCAGCAGGCGCGGTATATATACAGCGCTCGCGCCTAGCACAAATAACATTTCACACTCAAAATAGAACCAAGAA
GATCAAACACATAAAAACTAAATCAACAATAAATAATTTAATTTATTACAACTCAAACAAATAGTTTATCTCGCAATACA
ACAAATAGTTCAACAATACAACATCAAACATACAACATGACTAGTTGTCAAACACCTTGTGGGTGCCGAGCTGCAGTGGG
CCGCCGGACGTTGTTCGTCGGAGGAATAGCGCGCTCGAGGGGCAGCGGCGACGAGAGGAGGTGGAGGAAGTGGCAGCGGC
GCGCGGGGATAGGCGGGGGAAGCACCGACGAGCGCCGGAGCAAATGGGAAAGGTGTGGGCGGCGGAGCCGGAGCCTGGAT
CTGGCGGTCGGTGAAGTTGCGCGCGAGTCGTCGTTGTCCAGCGTGCGGGAGTGGACGCACGAAATAAGCGACGCGTGATG
CCGTTCTCCTCCCCGCAATTAACCCATTATACCGCGCGCCTATTTTTTGCGCGGCTGCTGGAGCGCCCGTTTTGGCTTCA
CACACGCAAAAAAGCCGTTTTTTCTAGCGCGCAGCTAAGATTGCGTGCCTGTTGGAGATGCTTTTAATCTGCCCCCCAAA
ACCATACTAGTCATGCAAGTTGATGCAAAGTATGTAGATCAACTTAGCAACATTCAGACAACACAAACATAGCACTGACC
ATACATATTTGGCATAAAGTTTTGTACATTCCGGCCCAAAAGTTCATCACACCAATCTAGATACATAGATAAACTAGAGA
AATAGATAAACATAGCTAAACGGAGGGGGCGGGGGACATCACTATTTCCTCGCCGGTCCCTTCTCCTTCCGGTCACCAGA
GTGGCGG-AGTAGTCCTCCGCATAGGTGCCAGCGGCCGGAGGGTCATCATCATCGGTGCTCATCGTGCCGCCATCGGACG
AGGACGAGATGTC-GTCACTGAGACGA-GGGCGGCGCTAGCCTGCTCCTTCGCGAGCCGGGCCACTTTCTCGTCGGCAGT
CACTCACTCTGTCACGAGGCGCTCTGAGTCCTCGGTGTCGAGTCAGAGCGCCTTAGTGTTCTTGCGGAGGAGGCACCTCG
CGGCCGCCTCCATTGTGGACAATGAATGGAGGACCGCAC---GCAAGAGTTGCTTACCTGGATCGACAAGCGGCGCGGTC
GCAGAC--------------------------------------------------------------------------
>SNPs
SSSSSSSSS------------------------------S---------------------------------S------
-------------------S-----------------S-------S---S--------------S-S------S------
---------------SSS-S----S-S--------S---------------------S------------------SS--
SS---S--S-------------------------------------S--------------------------S---S--
----S-SS--S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S---------S--S--------------------------------
----S-------------------S-----------------------S------S------------------------
S-SSSSSSSSSS-----S-----------------------------S--------------------------------
------------S----------------S----------S--------------S----------S-------------
-S--------S-S-------------------------------------S-----------------------------
------------------------------------------SS----------------------------SSSSS---
------------------S--------------------------------S----------------------------
----------------------------------------------------------SSSS-SSS-SSS-SS-S-----
--------------------------------------------------------------------------------
-------------S---------------------S--------------------------------------------
----S---S---S----------------------S---------SS---SS--S--S-S--------------------
--------S-------S--S------------------------------------------------------------
--------------------------------------------------------------------------------
S---------------------S--------S------------------------------------------------
-----------------------------------------------S-----------S--------------------
---------------------------S-------S---------SSSS--S----------S-----------------
----S--------------------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------S-
-------------------------------------------------------------------------------S
SSSSSSSSSSSS--------------------------------------------------------------------
----------------------------------------S----S----------------------------------
--S------S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------SS--
-------------------------S----------------------------S---S-------SSS----S------
---------------------------------------SSSSS--------------S---------S-----------
-----------------S-S------------------------------------------------------------
-------------S-----------S------------------------------------------------------
---S-------------S--------------------------------------------------------------
----------------------SSSS-SSSSS-SS-S-------------------------------------------
-------------------------------------S-S------------------------------SSS-------
-----------------S---------------S---------------S------------------------S---S-
--------------------------------------------------------------------------------
--------S-----S-SSSS-S-------------------------S---------------SS---S-----S-S---
-----S---------S-SS-S--------------S-S---S------------S----S--SSSSSSSSSSS--S-S--
--S------SS---SS-----S-----------SS-------S----S-S--S---S-----S----S-SSSS---S-S-
-SSS----------------------------------------------------------------------S-----
--------------------------------S-----------------S--------S--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------S--------------S--------SS--S-S--
--------SSSSSSS-S----------S----S-----------------S-----------------------------
---------S----S-----------------------------------------------------------------
------------------------------S-------------------------------------------------
--------S-----------------------------------------------------------------------
-----------------------S-----S----S---------------S-----------------------------
---------------------S----------------------------------------------------------
----------S---------------------------------------------------------------------
-----S------------------------S---------------S-------------------SS------------
--SSSS--SSSSSS--------S---------------------------------------------------------
-------------------------------S------------------------------------------------
S--------S-------------S------------------------------SS------------------------
--------------------------SS--------S------------------------S--SS-SS-----------
-----------------------S----SS---S--S-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------S-------------------------------------------S-------S----------------
----------------------------------------------------S---------------------------
---------------------S---------S---------S--------------------------------------
--------------S-----------S-----------------S----------------------------S------
-------------------------------------------------------------------------------S
---------S-------------------------------S------------------------S-------------
----S----------------------S-S---------SSS-------SS-----S-S--------S------------
------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_875
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------CGCGCCTACTACTACCAGTG-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_2154
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------AATGAAC
GGCGAGGAGGTAC-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
>forward_1732
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------GTAGACGAGACGAGTAGCGC----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>reverse_3039
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AT
TCTCGTGCTGCAGCTTCA--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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>forward_2940
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------TGGTTCAGAGATTCGGAGCG--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
>reverse_4241
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
TTGGATGCGATTCATGGGCT------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
