Multiple sequence alignment - TraesCS5A01G471400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G471400 chr5A 100.000 2735 0 0 1 2735 648196407 648193673 0.000000e+00 5051.0
1 TraesCS5A01G471400 chr5A 93.204 412 28 0 1 412 79143159 79142748 8.380000e-170 606.0
2 TraesCS5A01G471400 chr5A 86.176 340 38 8 2230 2567 648361342 648361010 2.590000e-95 359.0
3 TraesCS5A01G471400 chr5A 85.588 340 40 8 2230 2567 647966914 647966582 5.610000e-92 348.0
4 TraesCS5A01G471400 chr5A 91.333 150 10 1 2586 2735 648174813 648174667 4.620000e-48 202.0
5 TraesCS5A01G471400 chr5A 87.333 150 16 1 2586 2735 647966495 647966349 4.680000e-38 169.0
6 TraesCS5A01G471400 chr5A 82.759 145 20 4 1996 2137 536795561 536795419 1.030000e-24 124.0
7 TraesCS5A01G471400 chr5A 82.313 147 17 8 1996 2137 660878278 660878420 4.780000e-23 119.0
8 TraesCS5A01G471400 chr5A 87.129 101 13 0 499 599 46425335 46425235 6.190000e-22 115.0
9 TraesCS5A01G471400 chr5A 100.000 38 0 0 2551 2588 648174885 648174848 1.360000e-08 71.3
10 TraesCS5A01G471400 chrUn 93.460 1575 75 9 451 2021 67226221 67224671 0.000000e+00 2313.0
11 TraesCS5A01G471400 chrUn 94.737 418 21 1 1604 2021 356834610 356834194 0.000000e+00 649.0
12 TraesCS5A01G471400 chrUn 92.961 412 29 0 1 412 67226726 67226315 3.900000e-168 601.0
13 TraesCS5A01G471400 chrUn 91.096 146 13 0 2338 2483 67224488 67224343 5.970000e-47 198.0
14 TraesCS5A01G471400 chrUn 91.096 146 13 0 2338 2483 356834011 356833866 5.970000e-47 198.0
15 TraesCS5A01G471400 chrUn 88.742 151 13 2 2585 2735 67224202 67224056 6.020000e-42 182.0
16 TraesCS5A01G471400 chrUn 88.742 151 13 2 2585 2735 356833725 356833579 6.020000e-42 182.0
17 TraesCS5A01G471400 chrUn 86.667 150 17 1 2586 2735 294624171 294624025 2.180000e-36 163.0
18 TraesCS5A01G471400 chrUn 90.909 77 7 0 216 292 337213486 337213410 1.340000e-18 104.0
19 TraesCS5A01G471400 chrUn 90.909 77 7 0 216 292 337216125 337216049 1.340000e-18 104.0
20 TraesCS5A01G471400 chrUn 90.000 80 8 0 213 292 431058970 431059049 1.340000e-18 104.0
21 TraesCS5A01G471400 chrUn 97.368 38 1 0 2551 2588 67224273 67224236 6.320000e-07 65.8
22 TraesCS5A01G471400 chrUn 97.368 38 1 0 2551 2588 356833796 356833759 6.320000e-07 65.8
23 TraesCS5A01G471400 chr4D 93.447 412 27 0 1 412 396178660 396178249 1.800000e-171 612.0
24 TraesCS5A01G471400 chr4D 89.437 284 29 1 451 734 396178154 396177872 9.310000e-95 357.0
25 TraesCS5A01G471400 chr6D 93.204 412 27 1 1 412 402337889 402338299 3.010000e-169 604.0
26 TraesCS5A01G471400 chr6D 84.084 333 44 8 2237 2567 22762411 22762086 2.040000e-81 313.0
27 TraesCS5A01G471400 chr6D 81.633 147 26 1 1992 2138 13973376 13973521 1.330000e-23 121.0
28 TraesCS5A01G471400 chr6D 84.884 86 12 1 2144 2228 107384254 107384169 4.850000e-13 86.1
29 TraesCS5A01G471400 chr3B 92.961 412 29 0 1 412 790646642 790647053 3.900000e-168 601.0
30 TraesCS5A01G471400 chr3B 91.815 281 22 1 451 731 790647148 790647427 9.180000e-105 390.0
31 TraesCS5A01G471400 chr3B 89.697 165 17 0 451 615 24555379 24555543 7.670000e-51 211.0
32 TraesCS5A01G471400 chr2D 92.961 412 29 0 1 412 42560620 42561031 3.900000e-168 601.0
33 TraesCS5A01G471400 chr2D 89.085 284 30 1 451 734 42561126 42561408 4.330000e-93 351.0
34 TraesCS5A01G471400 chr2D 84.553 123 18 1 499 621 261749905 261749784 1.330000e-23 121.0
35 TraesCS5A01G471400 chr7B 89.286 168 18 0 451 618 246376377 246376210 7.670000e-51 211.0
36 TraesCS5A01G471400 chr5B 92.414 145 7 2 2586 2729 655284326 655284467 1.280000e-48 204.0
37 TraesCS5A01G471400 chr5B 88.667 150 11 3 2586 2735 655322915 655323058 7.780000e-41 178.0
38 TraesCS5A01G471400 chr5B 88.667 150 11 3 2586 2735 655392318 655392461 7.780000e-41 178.0
39 TraesCS5A01G471400 chr5B 97.368 38 1 0 2551 2588 655284254 655284291 6.320000e-07 65.8
40 TraesCS5A01G471400 chr5D 91.333 150 10 1 2586 2735 520301231 520301085 4.620000e-48 202.0
41 TraesCS5A01G471400 chr5D 96.970 33 1 0 1938 1970 424885068 424885100 3.800000e-04 56.5
42 TraesCS5A01G471400 chr2B 78.629 248 36 11 1996 2228 31128041 31127796 6.100000e-32 148.0
43 TraesCS5A01G471400 chr2B 78.049 246 41 8 1996 2228 30981142 30981387 2.840000e-30 143.0
44 TraesCS5A01G471400 chr2B 80.132 151 28 2 464 613 646410134 646410283 8.010000e-21 111.0
45 TraesCS5A01G471400 chr2A 77.647 255 33 12 1996 2228 738969503 738969251 1.710000e-27 134.0
46 TraesCS5A01G471400 chr2A 77.043 257 36 12 1992 2228 448295600 448295347 2.860000e-25 126.0
47 TraesCS5A01G471400 chr1B 77.559 254 35 11 1996 2228 601378806 601378554 1.710000e-27 134.0
48 TraesCS5A01G471400 chr3D 82.069 145 25 1 1994 2137 576697635 576697779 3.700000e-24 122.0
49 TraesCS5A01G471400 chr7A 90.000 50 5 0 1931 1980 651706097 651706048 6.320000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G471400 chr5A 648193673 648196407 2734 True 5051.00 5051 100.00000 1 2735 1 chr5A.!!$R4 2734
1 TraesCS5A01G471400 chr5A 647966349 647966914 565 True 258.50 348 86.46050 2230 2735 2 chr5A.!!$R6 505
2 TraesCS5A01G471400 chrUn 67224056 67226726 2670 True 671.96 2313 92.72540 1 2735 5 chrUn.!!$R2 2734
3 TraesCS5A01G471400 chrUn 356833579 356834610 1031 True 273.70 649 92.98575 1604 2735 4 chrUn.!!$R4 1131
4 TraesCS5A01G471400 chr4D 396177872 396178660 788 True 484.50 612 91.44200 1 734 2 chr4D.!!$R1 733
5 TraesCS5A01G471400 chr3B 790646642 790647427 785 False 495.50 601 92.38800 1 731 2 chr3B.!!$F2 730
6 TraesCS5A01G471400 chr2D 42560620 42561408 788 False 476.00 601 91.02300 1 734 2 chr2D.!!$F1 733

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
926 987 0.030908 CCTCGATCGGCTTCTGTACC 59.969 60.0 16.41 0.0 0.0 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2067 2128 0.179 GCTCTCATGGGTAGGGTGTG 59.821 60.0 0.0 0.0 0.0 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 7.962441 ACTTGCCCATTTTTAAGTTACTCAAT 58.038 30.769 0.00 0.00 29.65 2.57
64 65 3.074242 TGCATAATGGGTGCATCTCCATA 59.926 43.478 16.16 8.16 46.76 2.74
107 108 2.677037 CGGTCGAGCAATTCCCTTAGTT 60.677 50.000 15.89 0.00 0.00 2.24
116 117 4.195416 CAATTCCCTTAGTTCTCCTCTGC 58.805 47.826 0.00 0.00 0.00 4.26
118 119 2.902608 TCCCTTAGTTCTCCTCTGCAA 58.097 47.619 0.00 0.00 0.00 4.08
185 186 3.554934 TCCATAAGCGCATCCTGAAAAT 58.445 40.909 11.47 0.00 0.00 1.82
333 334 1.067212 CGTCCTCTCCTAATTGTCCCG 59.933 57.143 0.00 0.00 0.00 5.14
369 370 0.974383 ACTCCCGTTAACCTCCACAG 59.026 55.000 0.00 0.00 0.00 3.66
371 372 1.346722 CTCCCGTTAACCTCCACAGTT 59.653 52.381 0.00 0.00 0.00 3.16
412 413 3.419915 CGACACATCAATGCAGCTAAAC 58.580 45.455 0.00 0.00 0.00 2.01
413 414 3.728864 CGACACATCAATGCAGCTAAACC 60.729 47.826 0.00 0.00 0.00 3.27
414 415 3.156293 ACACATCAATGCAGCTAAACCA 58.844 40.909 0.00 0.00 0.00 3.67
415 416 3.057315 ACACATCAATGCAGCTAAACCAC 60.057 43.478 0.00 0.00 0.00 4.16
442 468 6.313519 TCTTCCAGACTAATAGCAAACCAT 57.686 37.500 0.00 0.00 0.00 3.55
493 550 0.466124 GCCTCTGCCTTATCCTCGTT 59.534 55.000 0.00 0.00 0.00 3.85
496 553 2.168521 CCTCTGCCTTATCCTCGTTGAA 59.831 50.000 0.00 0.00 0.00 2.69
618 675 4.642429 ACTTACGAGCTTCATTGTTTCCT 58.358 39.130 0.00 0.00 0.00 3.36
634 691 5.751586 TGTTTCCTGGAACTAGTTGACTTT 58.248 37.500 14.14 0.00 0.00 2.66
685 742 4.837093 ATGATACGGAGGGACAGAAAAA 57.163 40.909 0.00 0.00 0.00 1.94
703 760 1.967319 AACGATCACAACACCTTGCT 58.033 45.000 0.00 0.00 0.00 3.91
734 791 2.173758 TTGCGCCGGGACAGAATACA 62.174 55.000 4.18 0.00 0.00 2.29
745 802 5.063944 CGGGACAGAATACAAATTGTCTCAG 59.936 44.000 0.22 0.72 40.28 3.35
857 918 5.917541 TTGTACAACAAGAAACGATCCTC 57.082 39.130 3.59 0.00 32.34 3.71
858 919 4.951254 TGTACAACAAGAAACGATCCTCA 58.049 39.130 0.00 0.00 0.00 3.86
866 927 1.012486 AAACGATCCTCAACGACGGC 61.012 55.000 0.00 0.00 0.00 5.68
876 937 3.918591 CCTCAACGACGGCATATACATAC 59.081 47.826 0.00 0.00 0.00 2.39
877 938 4.321008 CCTCAACGACGGCATATACATACT 60.321 45.833 0.00 0.00 0.00 2.12
878 939 4.790878 TCAACGACGGCATATACATACTC 58.209 43.478 0.00 0.00 0.00 2.59
879 940 3.844577 ACGACGGCATATACATACTCC 57.155 47.619 0.00 0.00 0.00 3.85
880 941 2.490903 ACGACGGCATATACATACTCCC 59.509 50.000 0.00 0.00 0.00 4.30
881 942 2.753452 CGACGGCATATACATACTCCCT 59.247 50.000 0.00 0.00 0.00 4.20
882 943 3.181499 CGACGGCATATACATACTCCCTC 60.181 52.174 0.00 0.00 0.00 4.30
883 944 3.097614 ACGGCATATACATACTCCCTCC 58.902 50.000 0.00 0.00 0.00 4.30
884 945 2.099263 CGGCATATACATACTCCCTCCG 59.901 54.545 0.00 0.00 0.00 4.63
885 946 3.097614 GGCATATACATACTCCCTCCGT 58.902 50.000 0.00 0.00 0.00 4.69
886 947 4.275810 GGCATATACATACTCCCTCCGTA 58.724 47.826 0.00 0.00 0.00 4.02
887 948 4.338682 GGCATATACATACTCCCTCCGTAG 59.661 50.000 0.00 0.00 0.00 3.51
926 987 0.030908 CCTCGATCGGCTTCTGTACC 59.969 60.000 16.41 0.00 0.00 3.34
941 1002 0.035725 GTACCCAAGTACTGCCACCC 60.036 60.000 0.00 0.00 44.65 4.61
947 1008 0.910088 AAGTACTGCCACCCTCCTCC 60.910 60.000 0.00 0.00 0.00 4.30
972 1033 5.991606 CGATCTAAACCATCTTGATAAGCCA 59.008 40.000 0.00 0.00 0.00 4.75
990 1051 0.460987 CAGCACGTTCCATCCTCCTC 60.461 60.000 0.00 0.00 0.00 3.71
1021 1082 1.953138 GGCAGCGAGTCGATCATGG 60.953 63.158 18.61 0.00 0.00 3.66
1103 1164 1.336755 GTTCACGGTGACCAAATGCTT 59.663 47.619 10.97 0.00 0.00 3.91
1110 1171 1.541588 GTGACCAAATGCTTCACCTCC 59.458 52.381 0.00 0.00 34.72 4.30
1271 1332 0.537600 GAGGCCATGATCAGCAGCAT 60.538 55.000 5.01 8.58 0.00 3.79
1278 1339 0.107361 TGATCAGCAGCATGGGTCAG 60.107 55.000 0.00 0.00 35.86 3.51
1375 1436 0.107214 TTTCCAGATGGGGATCACGC 60.107 55.000 0.00 0.00 36.67 5.34
1573 1634 6.753279 GCTTGGACATAACACGTATACTGTAA 59.247 38.462 0.56 0.00 0.00 2.41
1602 1663 1.737008 GGAAGTCGACCAGGCGTTC 60.737 63.158 13.01 8.15 0.00 3.95
1611 1672 4.680237 CAGGCGTTCGTCCTGGCA 62.680 66.667 19.70 0.00 45.62 4.92
1707 1768 4.162690 GGGAGAGATTGCCGCCGT 62.163 66.667 0.00 0.00 0.00 5.68
1713 1774 0.249489 GAGATTGCCGCCGTAGACAT 60.249 55.000 0.00 0.00 0.00 3.06
1765 1826 0.454196 GGTTTGTGGTGACTTGCGTT 59.546 50.000 0.00 0.00 0.00 4.84
1834 1895 0.034337 TCGCAACGCCTTAGGTTTCT 59.966 50.000 0.00 0.00 0.00 2.52
1843 1904 3.314080 CGCCTTAGGTTTCTTGTGTTTGA 59.686 43.478 0.00 0.00 0.00 2.69
1857 1918 4.584874 TGTGTTTGAGTCTGAAAACTGGA 58.415 39.130 6.24 0.00 37.22 3.86
1859 1920 3.627577 TGTTTGAGTCTGAAAACTGGAGC 59.372 43.478 6.24 0.00 37.22 4.70
1900 1961 3.134574 TGGGCATTAGTTGAGTCGTTT 57.865 42.857 0.00 0.00 0.00 3.60
1906 1967 4.213482 GCATTAGTTGAGTCGTTTTGGAGT 59.787 41.667 0.00 0.00 0.00 3.85
1944 2005 1.224075 TCTATTACTCGCTCGGTCCG 58.776 55.000 4.39 4.39 0.00 4.79
1951 2012 1.197910 CTCGCTCGGTCCGAAAATAC 58.802 55.000 16.23 1.93 34.74 1.89
1960 2021 3.124636 CGGTCCGAAAATACTTGTTGGAG 59.875 47.826 4.91 0.00 0.00 3.86
2023 2084 8.514136 TTTAAACATAGTACAAATGCAAGTGC 57.486 30.769 7.85 0.00 42.50 4.40
2024 2085 5.964958 AACATAGTACAAATGCAAGTGCT 57.035 34.783 4.69 11.37 42.66 4.40
2025 2086 5.551760 ACATAGTACAAATGCAAGTGCTC 57.448 39.130 10.28 0.70 42.66 4.26
2026 2087 5.003160 ACATAGTACAAATGCAAGTGCTCA 58.997 37.500 10.28 1.27 42.66 4.26
2027 2088 5.473162 ACATAGTACAAATGCAAGTGCTCAA 59.527 36.000 10.28 0.00 42.66 3.02
2028 2089 4.916983 AGTACAAATGCAAGTGCTCAAA 57.083 36.364 4.69 0.00 42.66 2.69
2029 2090 4.610945 AGTACAAATGCAAGTGCTCAAAC 58.389 39.130 4.69 0.00 42.66 2.93
2030 2091 3.523606 ACAAATGCAAGTGCTCAAACA 57.476 38.095 4.69 0.00 42.66 2.83
2031 2092 4.062677 ACAAATGCAAGTGCTCAAACAT 57.937 36.364 4.69 0.00 42.66 2.71
2032 2093 5.199024 ACAAATGCAAGTGCTCAAACATA 57.801 34.783 4.69 0.00 42.66 2.29
2033 2094 4.984161 ACAAATGCAAGTGCTCAAACATAC 59.016 37.500 4.69 0.00 42.66 2.39
2034 2095 4.852134 AATGCAAGTGCTCAAACATACA 57.148 36.364 4.69 0.00 42.66 2.29
2035 2096 3.624326 TGCAAGTGCTCAAACATACAC 57.376 42.857 4.69 0.00 42.66 2.90
2036 2097 2.032117 TGCAAGTGCTCAAACATACACG 60.032 45.455 4.69 0.00 42.66 4.49
2037 2098 2.574322 CAAGTGCTCAAACATACACGC 58.426 47.619 0.00 0.00 38.08 5.34
2038 2099 1.156736 AGTGCTCAAACATACACGCC 58.843 50.000 0.00 0.00 38.08 5.68
2039 2100 1.156736 GTGCTCAAACATACACGCCT 58.843 50.000 0.00 0.00 0.00 5.52
2040 2101 2.028476 AGTGCTCAAACATACACGCCTA 60.028 45.455 0.00 0.00 38.08 3.93
2041 2102 2.093783 GTGCTCAAACATACACGCCTAC 59.906 50.000 0.00 0.00 0.00 3.18
2042 2103 2.289133 TGCTCAAACATACACGCCTACA 60.289 45.455 0.00 0.00 0.00 2.74
2043 2104 2.093783 GCTCAAACATACACGCCTACAC 59.906 50.000 0.00 0.00 0.00 2.90
2044 2105 3.585862 CTCAAACATACACGCCTACACT 58.414 45.455 0.00 0.00 0.00 3.55
2045 2106 3.581755 TCAAACATACACGCCTACACTC 58.418 45.455 0.00 0.00 0.00 3.51
2046 2107 3.006003 TCAAACATACACGCCTACACTCA 59.994 43.478 0.00 0.00 0.00 3.41
2047 2108 3.887621 AACATACACGCCTACACTCAT 57.112 42.857 0.00 0.00 0.00 2.90
2048 2109 3.438297 ACATACACGCCTACACTCATC 57.562 47.619 0.00 0.00 0.00 2.92
2049 2110 2.100916 ACATACACGCCTACACTCATCC 59.899 50.000 0.00 0.00 0.00 3.51
2050 2111 1.108776 TACACGCCTACACTCATCCC 58.891 55.000 0.00 0.00 0.00 3.85
2051 2112 0.614979 ACACGCCTACACTCATCCCT 60.615 55.000 0.00 0.00 0.00 4.20
2052 2113 1.341679 ACACGCCTACACTCATCCCTA 60.342 52.381 0.00 0.00 0.00 3.53
2053 2114 1.964223 CACGCCTACACTCATCCCTAT 59.036 52.381 0.00 0.00 0.00 2.57
2054 2115 2.029828 CACGCCTACACTCATCCCTATC 60.030 54.545 0.00 0.00 0.00 2.08
2055 2116 2.239400 CGCCTACACTCATCCCTATCA 58.761 52.381 0.00 0.00 0.00 2.15
2056 2117 2.628178 CGCCTACACTCATCCCTATCAA 59.372 50.000 0.00 0.00 0.00 2.57
2057 2118 3.553096 CGCCTACACTCATCCCTATCAAC 60.553 52.174 0.00 0.00 0.00 3.18
2058 2119 3.388024 GCCTACACTCATCCCTATCAACA 59.612 47.826 0.00 0.00 0.00 3.33
2059 2120 4.040952 GCCTACACTCATCCCTATCAACAT 59.959 45.833 0.00 0.00 0.00 2.71
2060 2121 5.246203 GCCTACACTCATCCCTATCAACATA 59.754 44.000 0.00 0.00 0.00 2.29
2061 2122 6.070538 GCCTACACTCATCCCTATCAACATAT 60.071 42.308 0.00 0.00 0.00 1.78
2062 2123 7.124298 GCCTACACTCATCCCTATCAACATATA 59.876 40.741 0.00 0.00 0.00 0.86
2063 2124 8.470805 CCTACACTCATCCCTATCAACATATAC 58.529 40.741 0.00 0.00 0.00 1.47
2064 2125 7.855784 ACACTCATCCCTATCAACATATACA 57.144 36.000 0.00 0.00 0.00 2.29
2065 2126 7.671302 ACACTCATCCCTATCAACATATACAC 58.329 38.462 0.00 0.00 0.00 2.90
2066 2127 7.290014 ACACTCATCCCTATCAACATATACACA 59.710 37.037 0.00 0.00 0.00 3.72
2067 2128 7.600375 CACTCATCCCTATCAACATATACACAC 59.400 40.741 0.00 0.00 0.00 3.82
2068 2129 7.290014 ACTCATCCCTATCAACATATACACACA 59.710 37.037 0.00 0.00 0.00 3.72
2069 2130 7.441836 TCATCCCTATCAACATATACACACAC 58.558 38.462 0.00 0.00 0.00 3.82
2070 2131 6.800072 TCCCTATCAACATATACACACACA 57.200 37.500 0.00 0.00 0.00 3.72
2071 2132 6.578944 TCCCTATCAACATATACACACACAC 58.421 40.000 0.00 0.00 0.00 3.82
2072 2133 5.758296 CCCTATCAACATATACACACACACC 59.242 44.000 0.00 0.00 0.00 4.16
2073 2134 5.758296 CCTATCAACATATACACACACACCC 59.242 44.000 0.00 0.00 0.00 4.61
2074 2135 4.901197 TCAACATATACACACACACCCT 57.099 40.909 0.00 0.00 0.00 4.34
2075 2136 6.553953 ATCAACATATACACACACACCCTA 57.446 37.500 0.00 0.00 0.00 3.53
2076 2137 5.726397 TCAACATATACACACACACCCTAC 58.274 41.667 0.00 0.00 0.00 3.18
2077 2138 4.748277 ACATATACACACACACCCTACC 57.252 45.455 0.00 0.00 0.00 3.18
2078 2139 3.453353 ACATATACACACACACCCTACCC 59.547 47.826 0.00 0.00 0.00 3.69
2079 2140 2.032965 ATACACACACACCCTACCCA 57.967 50.000 0.00 0.00 0.00 4.51
2080 2141 2.032965 TACACACACACCCTACCCAT 57.967 50.000 0.00 0.00 0.00 4.00
2081 2142 0.400213 ACACACACACCCTACCCATG 59.600 55.000 0.00 0.00 0.00 3.66
2082 2143 0.690192 CACACACACCCTACCCATGA 59.310 55.000 0.00 0.00 0.00 3.07
2083 2144 0.984230 ACACACACCCTACCCATGAG 59.016 55.000 0.00 0.00 0.00 2.90
2099 2160 3.118334 CCATGAGAGCACCTTCAAGAGAT 60.118 47.826 0.00 0.00 0.00 2.75
2108 2169 1.661341 CTTCAAGAGATTGAGGCGGG 58.339 55.000 0.00 0.00 31.87 6.13
2127 2188 6.431234 AGGCGGGATATCATTTTGAGATTTAC 59.569 38.462 4.83 0.00 26.96 2.01
2136 2197 7.129109 TCATTTTGAGATTTACGAAGTCACC 57.871 36.000 0.00 0.00 43.93 4.02
2138 2199 6.928979 TTTTGAGATTTACGAAGTCACCAA 57.071 33.333 0.00 0.00 43.93 3.67
2139 2200 7.504924 TTTTGAGATTTACGAAGTCACCAAT 57.495 32.000 0.00 0.00 43.93 3.16
2144 2222 2.754946 TACGAAGTCACCAATGGGAC 57.245 50.000 3.55 8.45 43.93 4.46
2158 2236 2.522271 GGGACATCTCCTCCCACTC 58.478 63.158 0.00 0.00 46.30 3.51
2193 2271 4.873827 CGGAGTTTCTGAAATAAATCCCGA 59.126 41.667 6.06 0.00 36.56 5.14
2202 2280 8.094798 TCTGAAATAAATCCCGAAATAATCCG 57.905 34.615 0.00 0.00 0.00 4.18
2209 2287 1.202651 CCCGAAATAATCCGAGCACCT 60.203 52.381 0.00 0.00 0.00 4.00
2210 2288 2.036733 CCCGAAATAATCCGAGCACCTA 59.963 50.000 0.00 0.00 0.00 3.08
2218 2297 1.919240 TCCGAGCACCTAGACTTGAA 58.081 50.000 0.00 0.00 0.00 2.69
2219 2298 2.457598 TCCGAGCACCTAGACTTGAAT 58.542 47.619 0.00 0.00 0.00 2.57
2221 2300 2.482142 CCGAGCACCTAGACTTGAATCC 60.482 54.545 0.00 0.00 0.00 3.01
2225 2304 2.237392 GCACCTAGACTTGAATCCTGGT 59.763 50.000 0.00 0.00 0.00 4.00
2226 2305 3.866651 CACCTAGACTTGAATCCTGGTG 58.133 50.000 0.00 0.00 36.66 4.17
2235 2314 2.185310 GAATCCTGGTGGTGGCGACT 62.185 60.000 0.00 0.00 34.23 4.18
2264 2343 1.450312 GCAGGCTCAACGGCATAGT 60.450 57.895 0.00 0.00 41.46 2.12
2330 2410 0.884704 TCAAAGCCAGAGTTCACGGC 60.885 55.000 4.85 4.85 46.62 5.68
2352 2432 2.812178 GCCGCGTCACCGTACAAT 60.812 61.111 4.92 0.00 36.15 2.71
2356 2436 3.077705 CGTCACCGTACAATGCCG 58.922 61.111 0.00 0.00 0.00 5.69
2377 2457 0.036388 GGCGGAATCAGTGGACTTCA 60.036 55.000 0.00 0.00 0.00 3.02
2485 2565 3.720193 CCGTCGACTCGTCCACGT 61.720 66.667 14.70 0.00 41.46 4.49
2486 2566 2.382746 CCGTCGACTCGTCCACGTA 61.383 63.158 14.70 0.00 41.46 3.57
2487 2567 1.699656 CCGTCGACTCGTCCACGTAT 61.700 60.000 14.70 0.00 41.46 3.06
2503 2583 1.393539 CGTATGGAGTTTGTCCTTGCG 59.606 52.381 3.69 3.69 46.88 4.85
2525 2605 2.453638 GCGCTCTACGTCAAAGGGC 61.454 63.158 14.83 14.83 46.11 5.19
2527 2607 1.295423 GCTCTACGTCAAAGGGCCA 59.705 57.895 6.18 0.00 34.17 5.36
2582 2692 1.669999 GCCATCCATGACCACAAGCC 61.670 60.000 0.00 0.00 0.00 4.35
2601 2748 1.078426 GGTCAGGCTGCCGTACAAT 60.078 57.895 22.26 0.00 0.00 2.71
2617 2764 0.790207 CAATAACGACGTGCAGCAGT 59.210 50.000 0.00 0.00 0.00 4.40
2703 2850 2.028484 GACAAGGCCGTGTCGACA 59.972 61.111 31.53 15.76 38.68 4.35
2726 2873 1.728971 GGAGTTCATCAAGACGCACAG 59.271 52.381 0.00 0.00 0.00 3.66
2727 2874 1.127582 GAGTTCATCAAGACGCACAGC 59.872 52.381 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 0.667487 CGGTGTCGAATGCAGACTGT 60.667 55.000 3.99 0.00 39.24 3.55
95 96 3.846588 TGCAGAGGAGAACTAAGGGAATT 59.153 43.478 0.00 0.00 0.00 2.17
107 108 2.439507 AGTTCACCTTTTGCAGAGGAGA 59.560 45.455 21.19 16.58 37.72 3.71
185 186 1.511850 CAACACAGTCGGATGCAAGA 58.488 50.000 0.00 0.00 0.00 3.02
220 221 7.493367 AGATTCTATTCTCGTCGAAAAAGGAT 58.507 34.615 0.00 0.00 34.79 3.24
369 370 2.029918 GTGGAGGAAAGTGATGGCAAAC 60.030 50.000 0.00 0.00 0.00 2.93
371 372 1.547675 GGTGGAGGAAAGTGATGGCAA 60.548 52.381 0.00 0.00 0.00 4.52
442 468 1.852965 GGATGGGAATGGAAGGAAGGA 59.147 52.381 0.00 0.00 0.00 3.36
493 550 2.595124 TTTGTCTGAGACGCACTTCA 57.405 45.000 8.23 0.00 34.95 3.02
578 635 0.898326 GTTGGAATTGTCGGGGCCTT 60.898 55.000 0.84 0.00 0.00 4.35
618 675 4.127171 GTCTGCAAAGTCAACTAGTTCCA 58.873 43.478 4.77 0.00 0.00 3.53
634 691 1.668751 GACAGGTTTTGTTCGTCTGCA 59.331 47.619 0.00 0.00 41.05 4.41
685 742 2.612972 CCTAGCAAGGTGTTGTGATCGT 60.613 50.000 0.00 0.00 38.19 3.73
816 877 3.697045 ACAAGATGTTCTCTCCTAGGACG 59.303 47.826 7.62 4.61 36.34 4.79
817 878 5.652891 TGTACAAGATGTTCTCTCCTAGGAC 59.347 44.000 7.62 0.00 33.79 3.85
818 879 5.827756 TGTACAAGATGTTCTCTCCTAGGA 58.172 41.667 11.98 11.98 31.03 2.94
819 880 6.071334 TGTTGTACAAGATGTTCTCTCCTAGG 60.071 42.308 8.98 0.82 31.03 3.02
820 881 6.925211 TGTTGTACAAGATGTTCTCTCCTAG 58.075 40.000 8.98 0.00 31.03 3.02
847 908 1.012486 GCCGTCGTTGAGGATCGTTT 61.012 55.000 0.00 0.00 38.61 3.60
851 912 2.440539 ATATGCCGTCGTTGAGGATC 57.559 50.000 0.00 0.00 0.00 3.36
857 918 3.918591 GGAGTATGTATATGCCGTCGTTG 59.081 47.826 0.00 0.00 0.00 4.10
858 919 3.057033 GGGAGTATGTATATGCCGTCGTT 60.057 47.826 0.00 0.00 0.00 3.85
881 942 3.520691 ATGCTATGTACTCCCTACGGA 57.479 47.619 0.00 0.00 36.45 4.69
882 943 3.128938 GCTATGCTATGTACTCCCTACGG 59.871 52.174 0.00 0.00 0.00 4.02
883 944 3.128938 GGCTATGCTATGTACTCCCTACG 59.871 52.174 0.00 0.00 0.00 3.51
884 945 4.345854 AGGCTATGCTATGTACTCCCTAC 58.654 47.826 0.00 0.00 0.00 3.18
885 946 4.570079 GGAGGCTATGCTATGTACTCCCTA 60.570 50.000 0.00 0.00 37.62 3.53
886 947 3.436243 GAGGCTATGCTATGTACTCCCT 58.564 50.000 0.00 0.00 0.00 4.20
887 948 2.498078 GGAGGCTATGCTATGTACTCCC 59.502 54.545 0.00 0.00 37.62 4.30
888 949 3.436243 AGGAGGCTATGCTATGTACTCC 58.564 50.000 0.00 0.00 42.49 3.85
889 950 3.127895 CGAGGAGGCTATGCTATGTACTC 59.872 52.174 0.00 0.00 0.00 2.59
890 951 3.085533 CGAGGAGGCTATGCTATGTACT 58.914 50.000 0.00 0.00 0.00 2.73
891 952 3.082548 TCGAGGAGGCTATGCTATGTAC 58.917 50.000 0.00 0.00 0.00 2.90
892 953 3.434940 TCGAGGAGGCTATGCTATGTA 57.565 47.619 0.00 0.00 0.00 2.29
893 954 2.294449 TCGAGGAGGCTATGCTATGT 57.706 50.000 0.00 0.00 0.00 2.29
926 987 1.201429 AGGAGGGTGGCAGTACTTGG 61.201 60.000 0.00 0.00 0.00 3.61
941 1002 3.235200 AGATGGTTTAGATCGGGAGGAG 58.765 50.000 0.00 0.00 0.00 3.69
947 1008 5.409826 GGCTTATCAAGATGGTTTAGATCGG 59.590 44.000 0.00 0.00 0.00 4.18
972 1033 0.904865 TGAGGAGGATGGAACGTGCT 60.905 55.000 0.00 0.00 0.00 4.40
990 1051 2.880879 CTGCCCATCGTCGTCGTG 60.881 66.667 1.33 0.35 38.33 4.35
1082 1143 0.951558 GCATTTGGTCACCGTGAACT 59.048 50.000 17.37 0.00 34.53 3.01
1110 1171 3.590824 GTGAATCCGGCACCCTTG 58.409 61.111 0.00 0.00 0.00 3.61
1479 1540 7.120579 TCGGCAATGTCAATGTAGTTATCTTTT 59.879 33.333 0.00 0.00 0.00 2.27
1518 1579 1.254284 ACAGAGAACTCTCCCTGCCG 61.254 60.000 3.04 0.00 43.88 5.69
1573 1634 1.751924 GTCGACTTCCTGGCTGATACT 59.248 52.381 8.70 0.00 0.00 2.12
1575 1636 1.112113 GGTCGACTTCCTGGCTGATA 58.888 55.000 16.46 0.00 0.00 2.15
1586 1647 2.049433 CGAACGCCTGGTCGACTT 60.049 61.111 16.46 0.00 0.00 3.01
1587 1648 3.264866 GACGAACGCCTGGTCGACT 62.265 63.158 16.46 0.00 0.00 4.18
1602 1663 3.991051 ACGGTGAGTGCCAGGACG 61.991 66.667 0.00 0.00 0.00 4.79
1611 1672 1.313812 GGTCGAGGATCACGGTGAGT 61.314 60.000 16.84 3.64 33.17 3.41
1651 1712 2.026641 ACAAGCACAGCAACATGAGTT 58.973 42.857 0.00 0.00 38.88 3.01
1765 1826 5.869344 CGACTCCAAATTGACTAGAATGACA 59.131 40.000 0.00 0.00 0.00 3.58
1824 1885 6.538742 TCAGACTCAAACACAAGAAACCTAAG 59.461 38.462 0.00 0.00 0.00 2.18
1834 1895 5.007034 TCCAGTTTTCAGACTCAAACACAA 58.993 37.500 8.75 0.00 35.66 3.33
1843 1904 3.643792 AGTACAGCTCCAGTTTTCAGACT 59.356 43.478 0.00 0.00 0.00 3.24
1857 1918 1.703438 CGACGCGACCTAGTACAGCT 61.703 60.000 15.93 0.00 0.00 4.24
1859 1920 0.247576 CACGACGCGACCTAGTACAG 60.248 60.000 15.93 0.00 0.00 2.74
1872 1933 1.136085 CAACTAATGCCCAACACGACG 60.136 52.381 0.00 0.00 0.00 5.12
1900 1961 9.383519 GATAAAGAAGATACATGTCAACTCCAA 57.616 33.333 0.00 0.00 0.00 3.53
1951 2012 7.388776 TCTTGACACATCTATTTCTCCAACAAG 59.611 37.037 0.00 0.00 0.00 3.16
2004 2065 5.550232 TGAGCACTTGCATTTGTACTATG 57.450 39.130 3.62 0.00 45.16 2.23
2008 2069 4.358851 TGTTTGAGCACTTGCATTTGTAC 58.641 39.130 3.62 0.00 45.16 2.90
2013 2074 4.549458 GTGTATGTTTGAGCACTTGCATT 58.451 39.130 3.62 0.00 45.16 3.56
2021 2082 2.289133 TGTAGGCGTGTATGTTTGAGCA 60.289 45.455 0.00 0.00 0.00 4.26
2022 2083 2.093783 GTGTAGGCGTGTATGTTTGAGC 59.906 50.000 0.00 0.00 0.00 4.26
2023 2084 3.585862 AGTGTAGGCGTGTATGTTTGAG 58.414 45.455 0.00 0.00 0.00 3.02
2024 2085 3.006003 TGAGTGTAGGCGTGTATGTTTGA 59.994 43.478 0.00 0.00 0.00 2.69
2025 2086 3.322369 TGAGTGTAGGCGTGTATGTTTG 58.678 45.455 0.00 0.00 0.00 2.93
2026 2087 3.671008 TGAGTGTAGGCGTGTATGTTT 57.329 42.857 0.00 0.00 0.00 2.83
2027 2088 3.430374 GGATGAGTGTAGGCGTGTATGTT 60.430 47.826 0.00 0.00 0.00 2.71
2028 2089 2.100916 GGATGAGTGTAGGCGTGTATGT 59.899 50.000 0.00 0.00 0.00 2.29
2029 2090 2.545952 GGGATGAGTGTAGGCGTGTATG 60.546 54.545 0.00 0.00 0.00 2.39
2030 2091 1.687123 GGGATGAGTGTAGGCGTGTAT 59.313 52.381 0.00 0.00 0.00 2.29
2031 2092 1.108776 GGGATGAGTGTAGGCGTGTA 58.891 55.000 0.00 0.00 0.00 2.90
2032 2093 0.614979 AGGGATGAGTGTAGGCGTGT 60.615 55.000 0.00 0.00 0.00 4.49
2033 2094 1.399714 TAGGGATGAGTGTAGGCGTG 58.600 55.000 0.00 0.00 0.00 5.34
2034 2095 2.240279 GATAGGGATGAGTGTAGGCGT 58.760 52.381 0.00 0.00 0.00 5.68
2035 2096 2.239400 TGATAGGGATGAGTGTAGGCG 58.761 52.381 0.00 0.00 0.00 5.52
2036 2097 3.388024 TGTTGATAGGGATGAGTGTAGGC 59.612 47.826 0.00 0.00 0.00 3.93
2037 2098 5.815233 ATGTTGATAGGGATGAGTGTAGG 57.185 43.478 0.00 0.00 0.00 3.18
2038 2099 9.025041 TGTATATGTTGATAGGGATGAGTGTAG 57.975 37.037 0.00 0.00 0.00 2.74
2039 2100 8.803235 GTGTATATGTTGATAGGGATGAGTGTA 58.197 37.037 0.00 0.00 0.00 2.90
2040 2101 7.290014 TGTGTATATGTTGATAGGGATGAGTGT 59.710 37.037 0.00 0.00 0.00 3.55
2041 2102 7.600375 GTGTGTATATGTTGATAGGGATGAGTG 59.400 40.741 0.00 0.00 0.00 3.51
2042 2103 7.290014 TGTGTGTATATGTTGATAGGGATGAGT 59.710 37.037 0.00 0.00 0.00 3.41
2043 2104 7.600375 GTGTGTGTATATGTTGATAGGGATGAG 59.400 40.741 0.00 0.00 0.00 2.90
2044 2105 7.070571 TGTGTGTGTATATGTTGATAGGGATGA 59.929 37.037 0.00 0.00 0.00 2.92
2045 2106 7.171508 GTGTGTGTGTATATGTTGATAGGGATG 59.828 40.741 0.00 0.00 0.00 3.51
2046 2107 7.217200 GTGTGTGTGTATATGTTGATAGGGAT 58.783 38.462 0.00 0.00 0.00 3.85
2047 2108 6.407639 GGTGTGTGTGTATATGTTGATAGGGA 60.408 42.308 0.00 0.00 0.00 4.20
2048 2109 5.758296 GGTGTGTGTGTATATGTTGATAGGG 59.242 44.000 0.00 0.00 0.00 3.53
2049 2110 5.758296 GGGTGTGTGTGTATATGTTGATAGG 59.242 44.000 0.00 0.00 0.00 2.57
2050 2111 6.582636 AGGGTGTGTGTGTATATGTTGATAG 58.417 40.000 0.00 0.00 0.00 2.08
2051 2112 6.553953 AGGGTGTGTGTGTATATGTTGATA 57.446 37.500 0.00 0.00 0.00 2.15
2052 2113 5.435686 AGGGTGTGTGTGTATATGTTGAT 57.564 39.130 0.00 0.00 0.00 2.57
2053 2114 4.901197 AGGGTGTGTGTGTATATGTTGA 57.099 40.909 0.00 0.00 0.00 3.18
2054 2115 4.873827 GGTAGGGTGTGTGTGTATATGTTG 59.126 45.833 0.00 0.00 0.00 3.33
2055 2116 4.080751 GGGTAGGGTGTGTGTGTATATGTT 60.081 45.833 0.00 0.00 0.00 2.71
2056 2117 3.453353 GGGTAGGGTGTGTGTGTATATGT 59.547 47.826 0.00 0.00 0.00 2.29
2057 2118 3.452990 TGGGTAGGGTGTGTGTGTATATG 59.547 47.826 0.00 0.00 0.00 1.78
2058 2119 3.726790 TGGGTAGGGTGTGTGTGTATAT 58.273 45.455 0.00 0.00 0.00 0.86
2059 2120 3.187379 TGGGTAGGGTGTGTGTGTATA 57.813 47.619 0.00 0.00 0.00 1.47
2060 2121 2.032965 TGGGTAGGGTGTGTGTGTAT 57.967 50.000 0.00 0.00 0.00 2.29
2061 2122 1.626321 CATGGGTAGGGTGTGTGTGTA 59.374 52.381 0.00 0.00 0.00 2.90
2062 2123 0.400213 CATGGGTAGGGTGTGTGTGT 59.600 55.000 0.00 0.00 0.00 3.72
2063 2124 0.690192 TCATGGGTAGGGTGTGTGTG 59.310 55.000 0.00 0.00 0.00 3.82
2064 2125 0.984230 CTCATGGGTAGGGTGTGTGT 59.016 55.000 0.00 0.00 0.00 3.72
2065 2126 1.208052 CTCTCATGGGTAGGGTGTGTG 59.792 57.143 0.00 0.00 0.00 3.82
2066 2127 1.573108 CTCTCATGGGTAGGGTGTGT 58.427 55.000 0.00 0.00 0.00 3.72
2067 2128 0.179000 GCTCTCATGGGTAGGGTGTG 59.821 60.000 0.00 0.00 0.00 3.82
2068 2129 0.252696 TGCTCTCATGGGTAGGGTGT 60.253 55.000 0.00 0.00 0.00 4.16
2069 2130 0.179000 GTGCTCTCATGGGTAGGGTG 59.821 60.000 0.00 0.00 0.00 4.61
2070 2131 0.983378 GGTGCTCTCATGGGTAGGGT 60.983 60.000 0.00 0.00 0.00 4.34
2071 2132 0.692419 AGGTGCTCTCATGGGTAGGG 60.692 60.000 0.00 0.00 0.00 3.53
2072 2133 1.139853 GAAGGTGCTCTCATGGGTAGG 59.860 57.143 0.00 0.00 0.00 3.18
2073 2134 1.833630 TGAAGGTGCTCTCATGGGTAG 59.166 52.381 0.00 0.00 0.00 3.18
2074 2135 1.951209 TGAAGGTGCTCTCATGGGTA 58.049 50.000 0.00 0.00 0.00 3.69
2075 2136 1.004044 CTTGAAGGTGCTCTCATGGGT 59.996 52.381 0.00 0.00 0.00 4.51
2076 2137 1.280133 TCTTGAAGGTGCTCTCATGGG 59.720 52.381 0.00 0.00 0.00 4.00
2077 2138 2.235650 TCTCTTGAAGGTGCTCTCATGG 59.764 50.000 0.00 0.00 0.00 3.66
2078 2139 3.606595 TCTCTTGAAGGTGCTCTCATG 57.393 47.619 0.00 0.00 0.00 3.07
2079 2140 4.224594 TCAATCTCTTGAAGGTGCTCTCAT 59.775 41.667 0.00 0.00 38.43 2.90
2080 2141 3.580022 TCAATCTCTTGAAGGTGCTCTCA 59.420 43.478 0.00 0.00 38.43 3.27
2081 2142 4.183101 CTCAATCTCTTGAAGGTGCTCTC 58.817 47.826 0.00 0.00 40.78 3.20
2082 2143 3.055240 CCTCAATCTCTTGAAGGTGCTCT 60.055 47.826 0.00 0.00 40.78 4.09
2083 2144 3.269178 CCTCAATCTCTTGAAGGTGCTC 58.731 50.000 0.00 0.00 40.78 4.26
2099 2160 4.136796 CTCAAAATGATATCCCGCCTCAA 58.863 43.478 0.00 0.00 0.00 3.02
2127 2188 2.009774 GATGTCCCATTGGTGACTTCG 58.990 52.381 18.95 0.00 32.67 3.79
2144 2222 1.741732 CGCTTTGAGTGGGAGGAGATG 60.742 57.143 0.00 0.00 0.00 2.90
2177 2255 7.934665 TCGGATTATTTCGGGATTTATTTCAGA 59.065 33.333 0.00 0.00 0.00 3.27
2178 2256 8.094798 TCGGATTATTTCGGGATTTATTTCAG 57.905 34.615 0.00 0.00 0.00 3.02
2193 2271 5.128827 TCAAGTCTAGGTGCTCGGATTATTT 59.871 40.000 0.00 0.00 0.00 1.40
2202 2280 3.431486 CCAGGATTCAAGTCTAGGTGCTC 60.431 52.174 0.00 0.00 0.00 4.26
2209 2287 2.571653 CCACCACCAGGATTCAAGTCTA 59.428 50.000 0.00 0.00 38.69 2.59
2210 2288 1.352352 CCACCACCAGGATTCAAGTCT 59.648 52.381 0.00 0.00 38.69 3.24
2218 2297 2.607750 AGTCGCCACCACCAGGAT 60.608 61.111 0.00 0.00 38.69 3.24
2219 2298 3.625897 CAGTCGCCACCACCAGGA 61.626 66.667 0.00 0.00 38.69 3.86
2221 2300 2.047844 CTCAGTCGCCACCACCAG 60.048 66.667 0.00 0.00 0.00 4.00
2225 2304 4.056125 CGAGCTCAGTCGCCACCA 62.056 66.667 15.40 0.00 32.22 4.17
2226 2305 3.973267 GACGAGCTCAGTCGCCACC 62.973 68.421 15.40 0.00 44.06 4.61
2264 2343 1.078918 CTGGCGAAGGATGTCTGCA 60.079 57.895 0.00 0.00 0.00 4.41
2271 2350 4.473520 CACCCGCTGGCGAAGGAT 62.474 66.667 16.79 0.00 42.83 3.24
2312 2392 1.576421 GCCGTGAACTCTGGCTTTG 59.424 57.895 6.37 0.00 45.40 2.77
2356 2436 3.195698 GTCCACTGATTCCGCCGC 61.196 66.667 0.00 0.00 0.00 6.53
2367 2447 1.553690 CCCCCGACATGAAGTCCACT 61.554 60.000 0.00 0.00 44.66 4.00
2419 2499 2.742372 GTTGGTCGCGTCTGCCAT 60.742 61.111 5.77 0.00 38.08 4.40
2424 2504 2.108157 TGCTTGTTGGTCGCGTCT 59.892 55.556 5.77 0.00 0.00 4.18
2485 2565 3.410631 TTCGCAAGGACAAACTCCATA 57.589 42.857 0.00 0.00 42.46 2.74
2486 2566 2.270352 TTCGCAAGGACAAACTCCAT 57.730 45.000 0.00 0.00 42.46 3.41
2487 2567 3.790691 TTCGCAAGGACAAACTCCA 57.209 47.368 0.00 0.00 42.46 3.86
2503 2583 0.362512 CTTTGACGTAGAGCGCGTTC 59.637 55.000 15.76 15.76 46.11 3.95
2516 2596 1.586154 CGTGACCATGGCCCTTTGAC 61.586 60.000 13.04 0.00 0.00 3.18
2525 2605 3.124921 GAACGGCCGTGACCATGG 61.125 66.667 34.95 11.19 40.47 3.66
2527 2607 3.687102 TCGAACGGCCGTGACCAT 61.687 61.111 34.95 16.86 0.00 3.55
2588 2698 0.648958 GTCGTTATTGTACGGCAGCC 59.351 55.000 0.00 0.00 44.98 4.85
2601 2748 1.693467 CTTACTGCTGCACGTCGTTA 58.307 50.000 0.00 0.00 0.00 3.18
2617 2764 9.698309 GATAAGCATGTAGTAGAATTCAGCTTA 57.302 33.333 8.44 12.58 43.48 3.09
2629 2776 5.942236 CCGGTAGTAGGATAAGCATGTAGTA 59.058 44.000 0.00 0.00 0.00 1.82
2630 2777 4.765856 CCGGTAGTAGGATAAGCATGTAGT 59.234 45.833 0.00 0.00 0.00 2.73
2631 2778 5.008331 TCCGGTAGTAGGATAAGCATGTAG 58.992 45.833 0.00 0.00 31.86 2.74
2700 2847 2.338500 GTCTTGATGAACTCCCGTGTC 58.662 52.381 0.00 0.00 0.00 3.67
2703 2850 0.389948 GCGTCTTGATGAACTCCCGT 60.390 55.000 0.00 0.00 0.00 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.