>input_sequence_70302
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--------------------ATGGGCAGCGAGTCGATCATGGAGTCGTCGGACCAGACGGCGGCGATAGTTGACGAGAAG
TTCCACGCGCCGACCAAGACGGAGTTCACGGTGACCAAATGCTTCACCTCCAAGGGTGCCGGATTCACCGTCACGGACTC
CGCCGGCGCCGCGGCCGTGATGGAGGTGGAGACCACCGAAGTGGGCGTCCGCAACCTAAGCTGCCTGCTCTGCCGCGACG
CTGCCTCACCCAGCCCGCTGATCACCCTCCAGGAGGCCATGATCAGCAGCATGGGTCAGCGGCAGTGGAAGGCGTTCAGG
GGGCACGGCACCAACGGGAGCGATTTGCTGTTCGTCGCCGTGGACATGACGCGGTTTTTCCAGATGGGGATCACGCTCCA
CGTGTTCCGTGCCGGCAACAGCCCCCGCGACGAGAAACCCGATTTCGTCGTCCGTGGCAGCTACTACCGCGGCGCCATGA
CCGTGTCCCGCCGCAACGAAAAAGATAACTACATTGACATTGCCGACATTGCGGAGATCGGCAGGGAGAGTTCTCTGTGG
TGCGCGATGCTTGGACATAACACGTATACTGTAAGTATCAGCCAGGAAGTCGACCAGGCGTTCGTCCTGGCACTCACCGT
GATCCTCGACCAGACGTATAGCCCTAAGCTCAACTCATGTTGCTGTGCTTGTGACCATTCATCTCCATATGGGAGAGATT
GCCGCCGTAGACATAATCGTTCAATAGATATGTGA---------------------------------------------
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>chr5A_1_TraesCS5A01G471400
TAGGTCTGTGATCCGACTTGCCCATTTTTAAGTTACTCAATCTGCATAATGGGTGCATCTCCATACAGTCTGCATTCGAC
ACCGCTCGGTCGAGCAATTCCCTTAGTTCTCCTCTGCAAAAGGTGAACTTATCACCATGGTAGCCAATATCCTCGAGGGA
ACCATCCATAAGCGCATCCTGAAAATCTTGCATCCGACTGTGTTGCCGAGGGGCTCCTCCATCCTTTTTCGACGAGAATA
GAATCTCATTAAAATCACCAATCACCACCCACGGGAGAGTGGACTGAGCATGGAGATCGCGCAAGAGATGATACGTCCTC
TCCTAATTGTCCCGGTTTGGTTCACCATACACTCCCGTTAACCTCCACAGTTTGCCATCACTTTCCTCCACCGACACATC
AATGCAGCTAAACCAC-------------------------CCTTCTTCCAGACTAATAGCAAACCATCCTTCCT-----
--------------------------TCCATTCCCATCCTCCTCATCAGAGCCTCTGCCTTATCCTCGTTGAAGTGCGTC
TCAGACAAAAAAAAAGCATCTGCATTATTTTGCCTCTGGATGTCCAGAAGCGAGCGAACTGTCGGGGCACCGAGAAGGCC
CCGACAATTCCAACTTACGAGCTTCATTGTTTCCTGGAACTAGTTGACTTTGCAGACGAACAAAACCTGTCGTAATCAGA
ATGATACGGAGGGACAGAAAAACGATCACAACACCTTGCTAGGCAATGGAGTTGCGCCGGGACAGAATACAAATTGTCTC
AG----AAAAAAAAAGATAAACGGTTATGTGTCGTAGCGTAATCTGATTACGCTAGAATTAGACACGAGTCCGTCCCGTC
CTAGGAGAGAACATCTTGTACAACAAGAAACGATCCTCAACGACGGCATATACATACTCCCTCCGTAGGGAGTACATAGC
ATAGCCTCCTCGATCGGCTTCTGTACCCAAGTACTGCCACCCTCCTCCCGATCTAAACCATCTTGATAAGCCAGCACGTT
CCATCCTCCTCACGACGACGATGGGCAGCGAGTCGATCATGGAGTCGTCGGACCAGACGGCGGCGATAGTTGACGAGAAG
TTCCACGCGCCGACCAAGACGGAGTTCACGGTGACCAAATGCTTCACCTCCAAGGGTGCCGGATTCACCGTCACGGACTC
CGCCGGCGCCGCGGCCGTGATGGAGGTGGAGACCACCGAAGTGGGCGTCCGCAACCTAAGCTGCCTGCTCTGCCGCGACG
CTGCCTCACCCAGCCCGCTGATCACCCTCCAGGAGGCCATGATCAGCAGCATGGGTCAGCGGCAGTGGAAGGCGTTCAGG
GGGCACGGCACCAACGGGAGCGATTTGCTGTTCGTCGCCGTGGACATGACGCGGTTTTTCCAGATGGGGATCACGCTCCA
CGTGTTCCGTGCCGGCAACAGCCCCCGCGACGAGAAACCCGATTTCGTCGTCCGTGGCAGCTACTACCGCGGCGCCATGA
CCGTGTCCCGCCGCAACGAAAAAGATAACTACATTGACATTGCCGACATTGCGGAGATCGGCAGGGAGAGTTCTCTGTGG
TGCGCGATGCTTGGACATAACACGTATACTGTAAGTATCAGCCAGGAAGTCGACCAGGCGTTCGTCCTGGCACTCACCGT
GATCCTCGACCAGACGTATAGCCCTAAGCTCAACTCATGTTGCTGTGCTTGTGACCATTCATCTCCATATGGGAGAGATT
GCCGCCGTAGACATAATCGTTCAATAGATATGTGAGCATAGGCTTAGGTTTGTGGTGACTTGCGTTGTCATTCTAGTCAA
TTTGGAGTCGGAGTTGGGAGCATGTGATGACGTAGTCGCAACGCCTTAGGTTTCTTGTGTTTGAGTCTGAAAACTGGAGC
TGTACTAGGTCGCGTCGTGTTGGGCATTAGTTGAGTCGTTTTGGAGTTGACATGTATCTTCTTTATCTATTACTCGCTCG
GTCCGAAAATACTTGTTGGAGAAATAGATGTGTCAAGATAAAATGAAATAAATTGTTTTTTAAACATAGTACAAATGCAA
GTGCTCAAACATACACGCCTACACTCATCCCTATCAACATATACACACACACCCTACCCATGAGAGCACCTTCAAGAGAT
TGAGGCGGGATATCATTTTGAGATTTACGAAGTCACCAATGG-----------------GACATCTCCTCCCACTCAAAG
CGCATCGCGGAGTTTCTGAAATAAATCCCGAAATAATCCGAGCACCTAGA-CTTGAATCCTGGTGGTGGCGACTGAGCTC
GTCGGCAGGCTCAACGGCATAGTGCAGACATCCTTCGCCAGCGG-GTGTGGGTGGACCGGAGGCTGGCGCTCAAAGCCAG
AGTTCACGGCCACCGCCGCGTCACCGTACAATGCCGCGGCGGAATCAGTGGACTTCATGTCGGGGGCCGAGCAGGCGAGG
CAGAGCGTGAACGCCTTCATGGCAGACGCGACCAACAAGCACATCCGCGAAGTCCTCCCTCCTGGCTCCGTCGACTCGTC
CACGTATGGAGTTTGTCCTTGCGAACGCGCTCTACGTCAAAGGGCCATGGTCACGGCCGTTCGACGTCT-----------
-------------------CCACCGTGCGCGTGCCATCCATGACCACAAGCCGGTCAG----------------------
---------------GCTGCCGTACAATAACGACGTGCAGCAGTAAGCTGAATTCTACTACATGCTTATCCTACTACCGG
ACAGGGACACTGTTAGTCTCGCCGATCTGTACGACAAGGCCGTGTCGACACGGGAGTTCATCAAGACGCACAGCCCGACA
G
>chrUn_1
TAGGTCTGTGATCCGACTAGCCCATTTTTAAGTTACTCAAATTGCATAATGGGTGCATCTCCATCCAGTCTGCATTTGAC
ACCGCTCGGTCGAGCCGTTCCCTTAGTCCTCCTCCGAAGAAGGTGAACTTATCACCATGGTAGCCAATATCCTTGAGGGA
ACCATCCATAAGCGCATCCTGAAAAGCTTGCATCCAACTGTATTGCCGACGGGCTCCTTCCTCATTTTCCGACGAGAATA
TAATCTCATTAAAATCACCAATCACCACCCACGGGAGAGTGGACTGAGCATGGAGATCGCGCAAGAGATGATACGTCCTC
TCCTAGTTGTCCTAGTTTGGTTCACCATACACTCCCGTTAACCTCGACATTCTCCCATCACTTTTCTCCACCGACACATC
AATGCAGCTAAAGGTAGTAGTCCGGAAGTAGATCCTCACCTCCTTCTTCTAGACTAATAGCAAACCACCCTTCATGC-AT
CGAGACATGGTGCCACAATCTTGTGATCCATTCCCATCCTCCTCATCAGAGTCTATACCTTATCCTTGTCGAGGTGCGTC
TCAGATAAAAAAAAAGCATCTGCATTATTTTGCCTCTGAATGTCCAAAAGTGAGCGAACTGTCGGGGCACCAAGGAGGCT
CCGACAATTCCAACTTACGAGCTTCATTGTTTCCCGGAACTAGTTGACTTAGCAGATGAACAAAACCTGCCGTAATCAGA
ATGATGCGGAGGGATAGAAAACCGATCACAACACCTTGCGAGGCAACGGAGTTGCACTGGGACAGAATACGAATTGTCTC
AAAGAAAAAAAAAAAGATAAACGGTTATGTGTCGTAGCGTAATCTGATTACGCTAGAATTAGACACGAGTCCGTCC----
-TAGGAGAGAACATCTTGTACAACAAGTAACAATCCTTGACGACGGGATATACATA------------------CATAGC
ATAGCCTCCTCGATCGGCTTCTGTACTCAAGTAGTGCCACCTTCCTCTCGATCTAAACCATCTTGATAAGCCTGCACGTT
CCATCCTCCTTACGACGACGATGGGCAGCGAGTCGATCATGCAGTCGTCGGACCAGACGGCGGCGATAGTTGACGAGAAG
TTCCACGCGCCGACCAAGACGGCGTTCACGGTGACCAAATGCTACACCTCGAAGGGTGCCGGATTCACCGTCACGGACTC
CGCCGGTGCCGCGGCCGTGATGGAGGTGGAGACCACCGAAGTGGGCGTCCGCAACCTAAGCTGCCTGCTCTGCCGCGACG
GTGCCTCACCCAGCCCGCTGATCACCCTCCAGGAGGCCATGATCAGCAGCACGGGTCAACGGCAGTGGAAGGCGTTCAGG
GGGCACGGCACCAACGGGAGCGATTTGCTGTTCGTCGCCGTGGACATGACGCGGTTTTTCCAGATGGGGATCACGGTCCA
CGTGTTCCGTGCCGGCAACACGCCCCGCGACGAGAAACCCGATTTCGTCGTCCGTGGCAGCTACTACCGCGGCGCCATGA
CCGTGTCCCGCCGCAACGAGAAAGATAACTACATTGACATTGCCGACATTGCGGAGATTGGCAGGGAGAGTTCTCTGTGG
TGCGCGATGCTTGGACATAACACGTATACTGTAGGGATCAGCCAGGGCGTCGACCAGGCGTTTGTCCTGGCGCTCACCGT
GATCCTCGACCAGACGTATAGCCCTAAGCTCGACTCATGTTGCTGTGCTTGTGACCATTCATCTCCATATGGGAGAGATT
GCCGCCGAAGACAAAATCGTTCAATAGATATATGAGCATAGGCTTAGGTTTGTGGTGACTTGCGTCGTCATTCTAGTCAA
TTTGGAGTCGGAGTTGGGAGCATGTGATGACGTAGTCGCAACGCGTTAGGTTTCCTGTGTTTGGGTCTGAAAACTGGGGT
TGTACTAGGTCGAGTCGTGTTGGGCATTAGTTGAGTCGTTGTGGAGGTGACATGTATCTTCTTTATCTATTACTCGCTCG
GTCCAAAAATATTTGTTGGAAAAATAGATGTGTCAAGATAAAATGAAATCAATT-TTTTTTAAATATAATACAGATGCAA
GC--------------------------------------------------------------AGCACCTTCAAGAGAC
TGAGGCGGCATATCATTTTGAGATTTATGAAGTCACTATAGGGGCCTCGTCGTTGACGCGATATCTCCTCCCACTGAAAG
CGCATCGCGAAAATCTTGAAATAAATCCCGGAATAATCCAAGCACCATGAGCTTGATCCTTGGCTGTGGCGACCGAGCTC
ATCGG---------------------------------------------------------------------------
----------------CGCGTCACGGTACAACGCCACGGCGGAATCCGCGGACTTCGTGTCAGGGGCCGAGCAGGCAAGG
CAAAGCGTGAACGCCTTCGTGGCGCACGCAACCAACAAGCACATCCGCGAAGTCCTCCCTCCTGGCTCCGTCGACTCGTC
CA----------------------------TCTACTTCAAAGGGGCGTGGTCACGGCCGTTCGTCGTTTCCACCGTGTCA
TTCCACATCCCAGGCGGCACCACCGTGCGCGTGCCATCCATGACCACAAGCAGGTCACAGCACATCGCGGTCTACCCGGG
CTTCAGGGACGTCAAGCTGCCGTATAAGAACGACGTGCAGCAGCAAGCTGAATTC---TACATGCTTATCCTACTACCGG
ACAGGGAAGCTGTTAGTCTCGTCGATCTGTACGGCAAGGCCATGTCAACGCGGGAGTTCAT-AAGACGCACACACCGACA
G
>chr4D_1
TAGGTCTGTGATCCGACTTGCCCATTTTTAAGTTACTCAAACCGCATAATGGGTGCATCTCCATCCAGTCTGCATTCGAC
ACCGCTCGGTCGAGCCGTTCCCTTAGTCCTCCTCTGAAGAAGGTGAACTTATCACCATGGTAACCAATATCCTCGAGGGA
ACAGTCCATGAGCGCGTCCTGAAAAGCTTGCATCCGACTGTGTTGTCAAGGGGCTCCTCCCTCCTTTTCCGACGAGAATA
GAATCTCATTAAAATCACCAACCGCCACCCACGGGAGAGTGAACTGAGCATGGAGATCGCGCAAGAGTTGATACGTCCTC
TCCTTATTGTCCCAGTTTGGTTCACCATACACTCCCGTTAGCCTCCACATTCTGCCATCACTTTCCTCCACCGACACATC
AATGCAGCTAAAGGTAGTAGTCCGGGAGTAGATCCTCACCTCCTTCTTCCAGACTAATAGCAAACCACCCTTCCTGCCAT
CGAGACATGGTGCCACAATCTTGTGATCCATTCCCATCGTCCTCATCAGAGCCTCCGCCTTATCCTCGTCCAGGTGCATC
TCAGACAGAAAAAACACATCTGCATTATTTTGCCTCTGGATATCCAGAAGCGAGCGAACTGTCGGGGCACCGAGGAGACC
CCGGCAATTCCAACTTATGAGCTTCATTGTTTCTGT-AACTATTTGACTTAGCATACGAACAAAACCTGCCGTAATCTGA
ATGACACGGAGGGACAGAAAACCGATCACAACGCCTTGCAAGTCAGCGGAGTTGCGTCGGGAAAGAATAC----------
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>chr3B_1
TAGGTATGTGATCCGACTTACCCATTTTTAAGTTACTCAAACCGCATAATGGGTGCATCTCCATCCAGTCCGCATTCGAC
ACCGCTCGGTCGAGCCATTCCCTTAGTCCTCCTCTGAAGAAGGTGAACTTATCACCATGGTAACCAATATCCTCGAGGGA
ACAGTCCATGAGCGCGTCCTGAAAAGCTCGCATCCGACTGTGTTGCCGAGGGGCTCCTCCCTCCTTTTCCGACGAGAATA
GAATCTCATTAAAATCACCAACCGCCACCCACGGGAGAGTGGACTAAGCATGAAGATCGCGCAAGAGTTGATACGTCCTC
TCCTTGTTGTCCCAGTTTGGTTCACCATACACTCCCGTTAACCTCCACATTCTGCCATCACTTTCCTCCACCGACACATC
AATGCAGCTAAAGGTAGTAGTCCGGGAGTAGATCCTCACCTCCTTCTTCCAGACTAATAGCAAACCACCCTTCCTGCCAT
CGAGACATGGTGCCACAATCTTGTGATCCATTCCCATCCTCCTCATCAGAGCCTCCGCCTTATCCTCGTCCAGGTGCGTC
TCAGACAGAAAAAACGCATCTGCATTATTTTGCCTTTGGATGTCCAGAAGCGAGCGAACTGTCGGGGCACCGAGGAGACC
CTGACAATTCCACCTTACGAGCTTCATTGTTTCCGT-AACTAGTTGACTTAGCAGACTAACAAAACCTGCCGTAATCTGA
ATGATACGGAGGGACAGAAAACCGATCACAACACCTTGCAAGGCAGCGGAGTTGCGTCAGGACAGAA-------------
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>chr2D_1
TAGGTCTGTGATCCGACTTGCCCATTTTTAAGTTACTCAAACCGCATAATGGGTGCATCTCCATCCAGTCTGCATTCGAC
ACCGCTCGGTCGAGCCGTTCCCTTAGTCCTCCTCTGAAGAAGGTGAACTTATCACCATGGTAACCAATATCCTCGAGGGA
ACAGTCCATGAGCGCGTCCTGAAAAGCTTGCATCCGACTGTGTTGCCGAGGGGCTCCTCCCTCCTTTTTCGACGAGAATA
GAATCTCATTAATATCGCCAACCGCCACCCACGGGAGAGTGGACTGAGCATGGAAATCGCGCAAGAATTGATACGTCCTG
TCCTTATTATCGCAGTTTGGTTCACCATACACTCCCGTTAACCTCCACATTCTGCCATCACTTTCCTCCACCGACACATC
AATGCAGCTAAAGGTAGTGGTCCGGGAATAGATCCTCACCTCCTTCTTCGAGACTAATATTAAACCACCCTTCCTGCCAT
CGAGAGATGGTGCCACAATCTTGTGATCCATTCCCATCGTCCTCATTAGAGCCTCCGCCTTATCTTCGTCCAGGTGCGTC
TCAGACAAAAAAAATGCATCTGCATTATTTTACATCTGGATATCCAGAAGCGAGCGAACTGTCGGGGCACCGAGGAGACC
CCGGCAATTCCAACTTATGAGCTTTGTTGTTTCTAT-AACTAGTTGACTTAGCAGACGAACAAAAACTGTCGTAATCTGA
ATGATACGGAGGGACAGAAAACCGATCACCACGCCTTGCAAGGTAGCGGAGTTGCACCGGGACAGAATAC----------
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>chrUn_1604
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---------------------------------------------------------------GTCCTGGCGCTCACCGT
GATCCTCGACCAGACGTATAGCCCTAAGCTCGACTCATGTTGCTGTGCTTGTGACCATTCATCTCCATATGGGAGAGATT
GCCGCCGAAGACAAAATCGTTCAATAGATATATGAGCATAGGCTTAGGTTTGTGGTGACTTGCGTCGTCATTCTAGTCAA
TTTGGAGTCGGAGTTGGGAGCATGTGATGACGTAGTCGCAACGCGTTAGGTTTCCTGTGTTTGGGTCTGAAAACTGGGGT
TGTACTAGGTCGAGTCGTGTTGGGCATTAGTTGAGTCGTTGTGGAGGTGACATGTATCTTCTTTATCTATTACTCGCTCG
GTCCAAAAATATTTGTTGGAAAAATAGATGTGTCAAGATAAAATGAAATCAATT-TTTTTTAAATATAATACAGATGCAA
GC--------------------------------------------------------------AGCACCTTCAAGAGAC
TGAGGCGGCATATCATTTTGAGATTTATGAAGTCACTATAGGGGCCTCGTCGTTGACGCGATATCTCCTCCCACTGAAAG
CGCATCGCGAAAATCTTGAAATAAATCCCGGAATAATCCAAGCACCATGAGCTTGATCCTTGGCTGTGGCGACCGAGCTC
ATCGG---------------------------------------------------------------------------
----------------CGCGTCACGGTACAACGCCACGGCGGAATCCGCGGACTTCGTGTCAGGGGCCGAGCAGGCAAGG
CAAAGCGTGAACGCCTTCGTGGCGCACGCAACCAACAAGCACATCCGCGAAGTCCTCCCTCCTGGCTCCGTCGACTCGTC
CA----------------------------TCTACTTCAAAGGGGCGTGGTCACGGCCGTTCGTCGTTTCCACCGTGTCA
TTCCACATCCCAGGCGGCACCACCGTGCGCGTGCCATCCATGACCACAAGCAGGTCACAGCACATCGCGGTCTACCCGGG
CTTCAGGGACGTCAAGCTGCCGTATAAGAACGACGTGCAGCAGCAAGCTGAATTC---TACATGCTTATCCTACTACCGG
ACAGGGAAGCTGTTAGTCTCGTCGATCTGTACGGCAAGGCCATGTCAACGCGGGAGTTCAT-AAGACGCACACACCGACA
G
>chr5A_2230
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-------------------------------------------------------------------GGCGACCGAGCTC
GTCGGCAGGCTCAACGGCATAGCGCAGACGTCCTTCGCCAGCGGCGTGTGGGTCGACCGGAGGTGGGCGCTAAG-GCCAG
AGTTCACGGGCACCATCGCGTCGTGGTACAACGCCACGGCGGAATCCGTGGACTTCGTGTCGGGGGCCGAGCAGGCGAGG
CAGCGCGTGAACGCCTTCGTGGCGGACGCGACCAACAAGCAAATCCTCGAAGTCCTACCTCCGGGCTCCGTCAACTCCAG
CACGGCAGTC----GTCCTCGCCAACGCGCTCTACTTCAAAGGGGCGTGGACTCAGCCGTTCGATGTCTCTACCGCGCCG
TTCCACATCCCAGGCGGCACCACCGTGCACGTGCCATCCATGACGACAAGCGAGTCACAGCACATCGCGGTCTACCCAGG
CTTCAGGGCCCTCAAGCTGCCGTACAAGAACGGCGTGCAGCAGCACGCTGAATTC---TACATGCTTATCCTACTACCGG
ACAGGGACACTGTCAGTCTTGCCGATCTGTACGACAAGGCCGTGTCTACGCCGGAATTTTTCAAGACGCACACACCAACA
G
>SNPs
----------------------------------------S-----------------------S---------------
---------------S-----------S--------S-S-----------------------------------------
-------------------------S----------------------------------S-------------------
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-------------S-----------------------------------S-S----------------------------
------------SSSS---------------------------------------------------S------------
---------------------------------------------------------------------S--S-------
--------------------------------------------------------------------------S-----
----------------------------------S---------------S-----------------------------
---------------------S-----------------S------S-----------------------S---------
-S--------------------------------------------------------------------------SSSS
S--------------------------S---S-----SS-------S---------SSSSSSSSSSSSSSSSSS------
--------------------------S------S-------S-----S------------------------S-------
----------S------------------------------S--------------------------------------
----------------------S--------------------S------S-----------------------------
------S-------------------------------------------------------------------------
S--------------------------------------------------S------S---------------------
---------------------------------------------------------------------------S----
--------------------SS----------------------------------------------------------
-------------------S--------------------------------------S---------------------
---------------------------------S-S----------SS--------------S--------S--------
-------------------------------S------------------------------------------------
-------S-----S-----------------S---------------------------------S--------------
--------------------------------------------S---------S--------S-------------S-S
------------S---------------------------S-----S---------------------------------
----S------S--------S----------------------------S----S---------S---S----S------
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------S
--------S------------------S--------S-SS---------------------S-------------S----
---------S-SS-SS--------------S--------S------SS--------SS-S---SS--------S------
----------------------S------S-----------------------S---------SS------S-SS-----
---------S----SS--------S------S---S----------S---------S-----------------------
------------------S----S--------------------------------------------------------
----SSS-SSSSSS-----S--S------------S--------S-S---------------------------------
---------------------------------------------------S-----S----------------------
---------------------------S---------------S-----------SSS----------------------
----------------------------------------------S--S----------------------SS------
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>forward_987
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-------CCTCGATCGGCTTCTGTACC-----------------------------------------------------
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>reverse_2128
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-----------------------------------------------CACACCCTACCCATGAGAGC-------------
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